[Bioperl-l] Coordinate mapping

[Ewan Birney]

On Thu, 20 Jun 2002, Heikki Lehvaslaiho wrote:

> 
> I am going to commit a first version of the  Bio::Coordinate::Mapper.pm 
> module today. I'll start writing it so that it converts integer value form 
> one coodinate system to an other and then later take into account 
> (subclassing or overwriting) Bio::Location start/end pairwise locations.
> The coordinate systems can have values like peptide, propeptide, cds, 
> transcript, gene, clone, ...


Heikki - before you start - why not import the Bio::EnsEMBL::Mapper::*
wholesale into Bioperl (though it wont do 1 ---> 3 mappings, ie DNA --->
protein). 

Hmmmm.


> 
> I will be committing quite often. This is the second time I am starting to 
> write this module. I lost the first version when my laptop crashed :-(
> 
> 	-Heikki
> 
> -- 
> ______ _/      _/_____________________________________________________
>        _/      _/                      http://www.ebi.ac.uk/mutations/
>       _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
>      _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
>     _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
>    _/  _/  _/  Cambs. CB10 1SD, United Kingdom
>       _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
> ___ _/_/_/_/_/________________________________________________________
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l
> 

-----------------------------------------------------------------
Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
<birney@ebi.ac.uk>. 
-----------------------------------------------------------------