[Bioperl-l] 1.0.1 preparing to release, 1.1 plans

[Heikki Lehvaslaiho]

For my part, I will commit in Bio::Tools::Run::EMBOSSACD.pm which is 
optionally called from Bio::Tools::Run::EMBOSSApplication to run a few crude 
tests on qualifiers before building the command line. This might come useful 
as a debugging tool while writing scripts. I finally know how to call for 
all the options any EMBOSS application can have.

	-Heikki

Jason Stajich wrote:
> As for 1.1 developer release, I am planning to try and cleanup any
> tests that are failing and release that before the end of the week.
> Anyone wanting to help, I'm happy to have you.
> 
> For some simple things I would like us to do a better job cross
> referencing return types with L<XXX> in the module documentation.
> Additional mundane things include insuring that the skip() in tests
> reports why they are skipped - so use
>     skip('MESSAGE HERE', 1);
>   instead of
>     skip(1, 'MESSAGE HERE');
> 
> Insuring that POD is checked and that all modules have a runnable SYNOPSIS
> is also a great service.
> 
> As for modules - if people have things in progress - a report would be in
> order.  For me I have
> 
> * Bio::SeqFeature::Collection - bins features into Bins just like
>   Bio::DB::GFF only with a pure DB_File implementation instead of in
>   mysql. Use it to quickly find features that overlap/are containin in a range.
> 
> * Some new Bio::Graphics glyphs for splice site donators and acceptors.
> 
> I know that Andrew is going to fix UniGene parser to handle changes from
> NCBI regarding the format.


-- 
______ _/      _/_____________________________________________________
       _/      _/                      http://www.ebi.ac.uk/mutations/
      _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
     _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
    _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
   _/  _/  _/  Cambs. CB10 1SD, United Kingdom
      _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
___ _/_/_/_/_/________________________________________________________