[Bioperl-l] Parse Blast -m=1

Jason Stajich jason@cgt.mc.duke.edu
Tue, 26 Feb 2002 15:19:36 -0500 (EST)


nope - happy to have someone who needs it, write it... We do parse blast
xml (-m 7).

-j
On Tue, 26 Feb 2002, Wiepert, Mathieu wrote:

> Hi,
>
> Can SearchIO handle different formats of blast output, or does it need the
> default?  I tried a blast with 'm' => '1', the blast output was good, the
> parser didn't work.  Got
>
> [blastall] ERROR: ncbiapi [000.000]  NM_000754: SeqPortNew: gi|14171611
> stop(870) >= len(840)
>
> -Mat
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-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu