[Bioperl-l] Correct SearchIO usage

[Jason Stajich]

yes:

% perldoc Bio::SearchIO
% perdoc Bio::Search::Result::GenericResult
% perdoc Bio::Search::Hit::GenericHit
% perdoc Bio::Search::HSP::GenericHSP


And the HowTo at
http://bio.perl.org/HOWTOs/

On Thu, 19 Dec 2002, Brian Carlson wrote:

> I'm looking to use Bioperl::SearchIO to read a blast alignment file.
> Then search all the alignments for a dna sequence in one species, and
> return the matching base pairs from the second species.  Is SearchIO the
> module to use to do this?  If so, which method(s) would I use to find
> the sequence and return the matching sequence.
>
> Thanks,
> Brian
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu