[Bioperl-l] Bio::SearchIO parsing of WuBLASTX reports

Mike Croning mdr@sanger.ac.uk
Fri, 19 Apr 2002 11:35:16 +0100 (BST)


On Thu, 18 Apr 2002, Jason Stajich wrote:

> mike - can I see the report?

Hi Jason, following up I just ran the same nucleotide query sequence with
NCBI blastx (BLASTX 2.0.6 [Sept-16-1998]) and the result file is parsed
correctly with Bio::SearchIO.

Mike Croning
'Grunt Programmer'
Vertebrate Sequence Analysis
The Wellcome Trust Sanger Institute
Wellcome Trust Genome Campus
Hinxton, Cambridge, CB10 1SA, UK
Tel: +44 (0)1223 834244
Fax: +44 (0)1223 494919