[Bioperl-l] Re: Sorry - 5.004 really complaining again...

[Jason Stajich]

I'm going to guess that you do indeed have File::Temp installed but in
fact it is an old version that does not support the method, tempdir....
We can fix this by by testing for presence of tempdir...  Wow I had no
idea that was even a possibility.

On Wed, 28 Feb 2001, Ewan Birney wrote:

> 
> Ok. We have a File::Temp::tempfile issue on 5.0004 - This is I guess
> something new about everything just going through this tempfile
> business...
> 
> 
> t/largepseq.........Undefined subroutine &File::Temp::tempdir called at
> blib/lib/Bio/Root/IO.pm line 448.
> Use of uninitialized value at blib/lib/Bio/Seq/LargePrimarySeq.pm line
> 233.
> 
> 
> This is causing all the tempfile stuff to fail there. 
> 
> 
> I thought we had a "hand-rolled" tempfile system for 5.0004
> compatibility. Not the case? Where should I be looking?
> 
> 
> Index.t is now failing with a Segmentation fault (!). Could be a local
> Perl set up problem <<sigh>>
> 
> 
> 
> I will investigate from home. 
> 
> 
> 
> 
> 
> 
> -----------------------------------------------------------------
> Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
> <birney@ebi.ac.uk>. 
> -----------------------------------------------------------------
> 
> 

Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center 
http://www.chg.duke.edu/