[Bioperl-l] bug parsing Expect(2) in BPLite

David Martin dmartin@bioinformatics.msiwtb.dundee.ac.uk
Wed, 5 Dec 2001 18:01:41 +0000 (GMT)


I have run into a problem where the Expectancy value in a tblastx search
is reported as Expect(2) rather than Expect. This is not picked up by the
parser and I am not quite sure where to find the parser. It is probably a
very quick fix (adding (?:\(2))? to the regular expression used to parse
the report).

Any hints on where to find this parser so I can fix it?

thanks

..d


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David Martin PhD
Bioinformatics Scientific Officer
Wellcome Trust Biocentre, Dundee
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