[Bioperl-l] Problems compiling bioperlHi

Jason Stajich jason@chg.mc.duke.edu
Fri, 3 Aug 2001 20:21:01 -0400


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Don't worry about it.

You need HTML::Parser and good luck on your side to get this test to =
work all the time.  I wouldn't worry about it unless you are going to =
use Bio::DB::GDB as it appears that the rest of bioperl is working just =
fine for you.

-Jason
  ----- Original Message -----=20
  From: Pedro A Reche Gallardo=20
  To: bioperl-l@bioperl.org=20
  Sent: Friday, August 03, 2001 11:52 AM
  Subject: [Bioperl-l] Problems compiling bioperlHi


  Hi all,  have anyone installed the bioperl-0.7.1 modules in an SGI? I =
have a SGI indigo2R1000 and when I installed the last release of bioperl =
(bioperl-0.7.1) the comant make test failed.  However, I could and I can =
install the previous version (bioperl-0.6.2) and everything goes fine.=20
  Tis is the error report of the make test:=20
   =20

  Failed Test  Status Wstat Total Fail  Failed  List of failed=20
  =
-------------------------------------------------------------------------=
------=20
  t/GDB.t           2   512    11    0   0.00%  ??=20
  106 subtests skipped.=20
  Failed 1/60 test scripts, 98.33% okay. 0/1011 subtests failed, 100.00% =
okay.=20
  *** Error code 2 (bu21)=20

  Is there any way I can solve this problem?. Please help!.=20
  Cheers=20

  =
*************************************************************************=
**
  PEDRO a. RECHE gallardo, pHD            TL: 617 632 3824               =
                                 =20
  Scientist, Mol.Immnunol.Foundation,     FX: 617 632 3351
  Dana-Farber Cancer Institute,           EM: =
reche@research.dfci.harvard.edu
  Harvard Medical School,                 EM: reche@mifoundation.org     =
        =20
  44 Binney Street, D610C,                URL: http://www.reche.org      =
        =20
  Boston, MA 02115                               =20
  =
*************************************************************************=
**=20
   =20


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<DIV><FONT face=3DArial size=3D2>Don't worry about it.</FONT></DIV>
<DIV>&nbsp;</DIV>
<DIV><FONT face=3DArial size=3D2>You need HTML::Parser and good luck on =
your side to=20
get this test to work all the time.&nbsp; I wouldn't worry about it =
unless you=20
are going to use Bio::DB::GDB as it appears that the rest of bioperl is =
working=20
just fine for you.</FONT></DIV>
<DIV><FONT face=3DArial size=3D2></FONT>&nbsp;</DIV>
<DIV><FONT face=3DArial size=3D2>-Jason</FONT></DIV>
<BLOCKQUOTE dir=3Dltr=20
style=3D"PADDING-RIGHT: 0px; PADDING-LEFT: 5px; MARGIN-LEFT: 5px; =
BORDER-LEFT: #000000 2px solid; MARGIN-RIGHT: 0px">
  <DIV style=3D"FONT: 10pt arial">----- Original Message ----- </DIV>
  <DIV=20
  style=3D"BACKGROUND: #e4e4e4; FONT: 10pt arial; font-color: =
black"><B>From:</B>=20
  <A title=3Dreche@research.dfci.harvard.edu=20
  href=3D"mailto:reche@research.dfci.harvard.edu">Pedro A Reche =
Gallardo</A>=20
</DIV>
  <DIV style=3D"FONT: 10pt arial"><B>To:</B> <A =
title=3Dbioperl-l@bioperl.org=20
  href=3D"mailto:bioperl-l@bioperl.org">bioperl-l@bioperl.org</A> </DIV>
  <DIV style=3D"FONT: 10pt arial"><B>Sent:</B> Friday, August 03, 2001 =
11:52=20
  AM</DIV>
  <DIV style=3D"FONT: 10pt arial"><B>Subject:</B> [Bioperl-l] Problems =
compiling=20
  bioperlHi</DIV>
  <DIV><BR></DIV><TT>Hi all,&nbsp; have anyone installed the =
bioperl-0.7.1=20
  modules in an SGI? I have a SGI indigo2R1000 and when I installed the =
last=20
  release of bioperl (bioperl-0.7.1) the comant make test failed.&nbsp; =
However,=20
  I could and I can install the previous version (bioperl-0.6.2) and =
everything=20
  goes fine.</TT><TT></TT>=20
  <P><TT>Tis is the error report of the make test:</TT>=20
  <BR><TT></TT>&nbsp;<TT></TT>=20
  <P><TT>Failed Test&nbsp; Status Wstat Total Fail&nbsp; Failed&nbsp; =
List of=20
  failed</TT>=20
  =
<BR><TT>-----------------------------------------------------------------=
--------------</TT>=20
  =
<BR><TT>t/GDB.t&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbs=
p;=20
  2&nbsp;&nbsp; 512&nbsp;&nbsp;&nbsp; 11&nbsp;&nbsp;&nbsp; 0&nbsp;&nbsp; =

  0.00%&nbsp; ??</TT> <BR><TT>106 subtests skipped.</TT> <BR><TT>Failed =
1/60=20
  test scripts, 98.33% okay. 0/1011 subtests failed, 100.00% okay.</TT>=20
  <BR><TT>*** Error code 2 (bu21)</TT>=20
  <P>Is there any way I can solve this problem?. Please help!. =
<BR>Cheers=20
  =
<BR><BR><TT>*************************************************************=
**************<BR>PEDRO=20
  a. RECHE gallardo,=20
  pHD&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; =
TL: 617=20
  632=20
  =
3824&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nb=
sp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbs=
p;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp=
;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;=
&nbsp;<BR>Scientist,=20
  Mol.Immnunol.Foundation,&nbsp;&nbsp;&nbsp;&nbsp; FX: 617 632=20
  3351<BR>Dana-Farber Cancer=20
  Institute,&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; =
EM:=20
  reche@research.dfci.harvard.edu<BR>Harvard Medical=20
  =
School,&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;=
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;=20
  EM:=20
  =
reche@mifoundation.org&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nb=
sp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<BR>44=20
  Binney Street,=20
  =
D610C,&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&=
nbsp;&nbsp;&nbsp;&nbsp;=20
  URL: <A=20
  =
href=3D"http://www.reche.org">http://www.reche.org</A>&nbsp;&nbsp;&nbsp;&=
nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B=
R>Boston,=20
  MA=20
  =
02115&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&n=
bsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nb=
sp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<BR>******************=
*********************************************************</TT>=20
  <BR><TT></TT>&nbsp; </P></BLOCKQUOTE></BODY></HTML>

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