[Bioperl-l] Fasta Qual files

[Ewan Birney]

On Thu, 14 Sep 2000, Hilmar Lapp wrote:

> "Brian A. Desany, Ph.D." wrote:
> > 
> > This works great. My question is, does bioperl have the capability of
> > treating fasta.qual files like this? I tried it on a fasta.qual file and it
> > definitely did not work! Error message about unrecognized alphabet. It
> 
> I have code for reading Phred-produced seq/qual pairs of FASTA-formatted
> files into Bio::QualSeq objects, which are merely Bio::Seq objects with
> quality values (being truncated and reversed, too, when you
> truncate/reverse the seq). The code can also write qual-files.
> 
> If you think this is useful for you I'll try to put it to the repository.

Sounds very useful. Check it in!


> 
> 	Hilmar
> 
> -- 
> -----------------------------------------------------------------
> Hilmar Lapp                                email: hlapp@gmx.net
> NFI Vienna, IFD/Bioinformatics             phone: +43 1 86634 631
> A-1235 Vienna                                fax: +43 1 86634 727
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Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
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