Bioperl: Genbank location qualifiers.

Ian Davies cardotyn@hotmail.com
Tue, 16 May 2000 15:11:24 GMT


Hi there,
I have been playing around  with Bioperl,
and have read a Genbank annotated sequence record,
and written it out again as follows:

$in  = Bio::AnnSeqIO->new(-file => "$home/data/chopped_gb_file" , -format => 
'GenBank');
$out = Bio::AnnSeqIO->new(-fh=>*STDOUT,-format => 'GenBank');

while ($seq = $in->next_annseq() ) {
        $out->write_annseq($seq);
}

I then diffed the input and output, and noticed
that the location qualifiers < . >
for fuzzy locations had been lost.

Are these not handled?

regards,
Carl Dobson.
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