[Bioperl-l] XBLAST replacement?

Jonathan Epstein Jonathan_Epstein@nih.gov
Wed, 13 Dec 2000 12:21:29 -0500


Does anyone have a BioPerl-friendly replacement for XBLAST?
   http://analysis.molbiol.ox.ac.uk/pise_html/xblast.html
   http://bioweb.pasteur.fr/docs/man/man/xblast.1.html

The idea is to mask out one domain in a set of selected sequences so that 
one can then perform a more sensitive search on a second domain.

It doesn't look too hard to implement, but thought I would ask before 
reinventing the wheel.

TIA,

-Jonathan



Jonathan Epstein                                Jonathan_Epstein@nih.gov
Head, Unit on Biologic Computation              (301)402-4563
Office of the Scientific Director               Bldg 31, Room 2A47
Nat. Inst. of Child Health & Human Development  31 Center Drive
National Institutes of Health                   Bethesda, MD 20892