[Bioperl-l] somethin' strange about RootI?

Mark Wilkinson mwilkinson@gene.pbi.nrc.ca
Fri, 01 Dec 2000 16:40:00 -0600


Hi Group,

Is there something about the RootI that has changed to prevent these
lines from
working properly? (This routine was working until I cvs-updated my
bioperl "live" folder this afternoon...)

my $SelectedSeq = Bio::PrimarySeq->new(-seq => (join '',@SelectedSeqs),
-moltype => 'dna');
my $SelectedTrans = $SelectedSeq->translate()->seq;

I get the following error (in both Windows and Linux):


-------------------- EXCEPTION --------------------
MSG:
CONTEXT: Error in uNKNOWN CONTEXT
SCRIPT: Workbench2.pl
STACK:
Bio::Root::RootI::new(82)
Bio::PrimarySeqI::translate(602)
QueryScreen::_checkFrame(286)
QueryScreen::__ANON__(242)
Tk::MainLoop(329)
QueryScreen::new(581)
main::Workbench2.pl(18)
---------------------------------------------------