May 2011 Archives by author

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Starting: Tue May 3 07:09:29 EDT 2011
Ending: Thu May 26 11:46:33 EDT 2011
Messages: 59

• [Bioperl-guts-l] [bioperl/bioperl-run] abb50c: MSAProbs BioPerl-Run wrapper with test script   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] bbb9b6: bump version   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] e094c7: update Changes   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 997d70: Use of qw(...) as parentheses is deprecated with p...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 1c9b04: XML::Parser::PerlSAX required for these tests   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 474812: more deprecated code removal; squash test failing ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 07aa85: more Changes   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] b19ceb: add skips and a warning re: NeXML v0.9 support   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] f5b5e2: added suggested change by John Anderson (genehack)...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 9d2b09: only allow defined data, otherwise nastiness may e...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] bb079a: see if we can make PAUSE skip indexing these modul...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] af91f5: deal with small change in # of contigs returned wi...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-run] 3ca75c: updating Changes   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 53b05a: strip out -w flag (see perllexwarn as to why setti...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 14850c: fix spelling errors, fixes #3228   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 0e54c5: more updates to handle FASTA 3.6 multi-HSP hits   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] e14b72: oops, didn't mean to change the new bug website   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 60401c: uncomment versioning code, which sets the version ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 1d6bcc: perl 5.14.0 not pending anymore   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 022b7e: - now actually checking if executable was found (a...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 2e7974: run this in an eval block; tests are still failing...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-run] 44559f: updating version numbers. Any way to have this aut...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-run] 407187: Bio::DB::Sam missing from required modules list wa...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-run] 59e7fb: don't call executable()   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 67d124: With little effort, our hero valiantly slays THE D...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-run] 4a685f: this module requires Config::Any; skip these tests...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-run] 8e4f7f: this module requires Config::Any; skip these tests...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] e2a22d: Add some tests for Bio::Root::IO->new taking Path:...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] d6f4ef: Perltidy t/SearchIO/blast.t, no functional changes   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] f43bb4: Add more tests for Bio::SearchIO + Path::Class obj...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 0f1362: cmdline example should have format for -sf option   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] bd5ba8: fix broken types() method   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] d9b3c4: fix broken types() method in SeqFeature::Store mem...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] bd2329: Merge branch 'topic/leto_path_class'   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 6e67ae: warn about the particular ID that doesn't exist   noreply at github.com
• [Bioperl-guts-l] [BioPerl - Bug #3206] Use of uninitialized value in length at Bio/DB/SeqFeature/Store/DBI/mysql.pm line 1064.   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3206] Use of uninitialized value in length at Bio/DB/SeqFeature/Store/DBI/mysql.pm line 1064.   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3215] CPAN build of Bioperl 1.6.900 in Win7 x64, Strawberry Perl 5.12.2 x64   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl-Run - Bug #3226] Bio::Tools::Run::Phylo::Phyml Lacks LG model of AA sequence evolution   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl-Run - Bug #3210] Bio::Tools::Run::BWA failing tests   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3205] (Closed) Bio::Perl blast_sequence function documentation is not correct   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3215] CPAN build of Bioperl 1.6.900 in Win7 x64, Strawberry Perl 5.12.2 x64   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3215] CPAN build of Bioperl 1.6.900 in Win7 x64, Strawberry Perl 5.12.2 x64   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3131] (Resolved) Manual builld on Perl 5.12 and Windows using CPAN   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3215] CPAN build of Bioperl 1.6.900 in Win7 x64, Strawberry Perl 5.12.2 x64   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #2391] query method does not return entire description in GenericHit   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3200] Bio::DB::GenBank keeping child process ID's   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Support #3231] (New) Author tracking across repository migrations   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3233] (New) Error in FASTA sequence retrival using Bio::DB::FASTA->subseq()   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3233] Error in FASTA sequence retrival using Bio::DB::FASTA->subseq()   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3233] Error in FASTA sequence retrival using Bio::DB::FASTA->subseq()   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3235] (New) Blast.pm adding \x01 character inconsistently when parsing of some Hit Identifiers   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3237] (New) Bio::DB::Fasta - Sub-sequence retrival off by a few base pairs   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3237] Bio::DB::Fasta - Sub-sequence retrival off by a few base pairs   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3237] Bio::DB::Fasta - Sub-sequence retrival off by a few base pairs   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3238] (New) access data: namespace support did not work properly for Bio::DB::Seqfeature::Store::DBI::Pg   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3239] (New) AlignIO stockholm   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3240] (New) AlignIO stockholm   redmine at redmine.open-bio.org
• [Bioperl-guts-l] [BioPerl - Bug #3239] (Rejected) AlignIO stockholm   redmine at redmine.open-bio.org

Last message date: Thu May 26 11:46:33 EDT 2011
Archived on: Thu May 26 11:46:37 EDT 2011

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