[Bioperl-guts-l] [bioperl/bioperl-live] 0a9f05: Root::IO: Make the readbuffer a stack, not a FIFO

noreply at github.com noreply at github.com
Fri Aug 5 18:32:19 EDT 2011


  Branch: refs/heads/master
  Home:   https://github.com/bioperl/bioperl-live

  Commit: 0a9f05b0f2ec68ebbed9bc3af94c59bae72fbe2d
      https://github.com/bioperl/bioperl-live/commit/0a9f05b0f2ec68ebbed9bc3af94c59bae72fbe2d
  Author: Kai Blin <kai.blin at biotech.uni-tuebingen.de>
  Date:   2011-08-05 (Fri, 05 Aug 2011)

  Changed paths:
    M Bio/Root/IO.pm
  M t/Root/RootIO.t

  Log Message:
  -----------
  Root::IO: Make the readbuffer a stack, not a FIFO

Signed-off-by: Kai Blin <kai.blin at biotech.uni-tuebingen.de>


  Commit: 3d32a7245ecfb3f6a2eed65e0c4267992531f62f
      https://github.com/bioperl/bioperl-live/commit/3d32a7245ecfb3f6a2eed65e0c4267992531f62f
  Author: Kai Blin <kai.blin at biotech.uni-tuebingen.de>
  Date:   2011-08-05 (Fri, 05 Aug 2011)

  Changed paths:
    M Bio/SearchIO/hmmer.pm
  M Bio/SearchIO/hmmer2.pm
  M Bio/SearchIO/hmmer3.pm
  M t/SearchIO/hmmer.t

  Log Message:
  -----------
  SearchIO::hmmer: correctly handle format determination on non-seekable filehandles

This fixes bug #3264.

Signed-off-by: Kai Blin <kai.blin at biotech.uni-tuebingen.de>


Compare: https://github.com/bioperl/bioperl-live/compare/3823b70...3d32a72


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