[Bioperl-guts-l] [bioperl/bioperl-live] 0ea2d4: commit some parts of the development - this has so...

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Branch: refs/heads/master
Home:   https://github.com/bioperl/bioperl-live

Commit: 0ea2d449038c6d8dd4b64983e6ba69589424b461
    https://github.com/bioperl/bioperl-live/commit/0ea2d449038c6d8dd4b64983e6ba69589424b461
Author: Jason Stajich <jason at bioperl.org>
Date:   2010-11-09 (Tue, 09 Nov 2010)

Changed paths:
  A Bio/DB/Tree/Store/DBI/SQLite.pm

Log Message:
-----------
commit some parts of the development - this has some basic SQL schema


Commit: ac189bb9c69d4c08ada2d56531f09241b1bc4d2a
    https://github.com/bioperl/bioperl-live/commit/ac189bb9c69d4c08ada2d56531f09241b1bc4d2a
Author: Jason Stajich <jason at bioperl.org>
Date:   2010-11-09 (Tue, 09 Nov 2010)

Changed paths:
  M Bio/DB/Tree/Node.pm

Log Message:
-----------
some stubs filled in


Commit: 86c901a9987f3cd2e89ffc573b05ce3c646d5610
    https://github.com/bioperl/bioperl-live/commit/86c901a9987f3cd2e89ffc573b05ce3c646d5610
Author: Jason Stajich <jason at bioperl.org>
Date:   2010-11-09 (Tue, 09 Nov 2010)

Changed paths:
  M Bio/DB/Tree/Store/DBI/SQLite.pm

Log Message:
-----------
some helper methods implemented and the schema tweaked


Commit: 1e21af8368686de3ecf5f392032d495514dccb54
    https://github.com/bioperl/bioperl-live/commit/1e21af8368686de3ecf5f392032d495514dccb54
Author: Jason Stajich <jason at bioperl.org>
Date:   2010-11-09 (Tue, 09 Nov 2010)

Changed paths:
  M Bio/Tree/NodeNHX.pm
  M Bio/Tree/Tree.pm
  M Bio/Tree/TreeFunctionsI.pm
  M Bio/TreeIO.pm
  A Bio/TreeIO/NewickParser.pm
  M Bio/TreeIO/TreeEventBuilder.pm
  M Bio/TreeIO/newick.pm
  M Bio/TreeIO/nhx.pm
  M t/Tree/Node.t
  M t/Tree/TreeIO.t
  M t/Tree/TreeIO/newick.t
  M t/Tree/TreeIO/nhx.t
  A t/data/biorecipe.nhx
  A t/data/ex1.nucl.nhx
  A t/data/nhx-bacteria.nhx
  A t/data/tol-2010-02-18.nhx
  A t/data/wellcome_tol.nhx

Log Message:
-----------
Merge remote branch 'upstream/master' into topic/tree_dbsqlite_memoryfix


Commit: 6a7d3d2a24ea987dafc90eb6d63c7fcd0f656dbb
    https://github.com/bioperl/bioperl-live/commit/6a7d3d2a24ea987dafc90eb6d63c7fcd0f656dbb
Author: Jason Stajich <jason at bioperl.org>
Date:   2010-11-09 (Tue, 09 Nov 2010)

Changed paths:
  M Bio/DB/Tree/Store/DBI/SQLite.pm

Log Message:
-----------
change order for columns


Commit: 579a85cbc2bf5ae301eef0e27aab77b7823c09dd
    https://github.com/bioperl/bioperl-live/commit/579a85cbc2bf5ae301eef0e27aab77b7823c09dd
Author: Jason Stajich <jason at bioperl.org>
Date:   2010-11-09 (Tue, 09 Nov 2010)

Changed paths:
  M Bio/Tree/NodeNHX.pm
  M Bio/Tree/Tree.pm
  M Bio/Tree/TreeFunctionsI.pm
  M Bio/TreeIO.pm
  A Bio/TreeIO/NewickParser.pm
  M Bio/TreeIO/TreeEventBuilder.pm
  M Bio/TreeIO/newick.pm
  M Bio/TreeIO/nhx.pm
  M t/Annotation/Annotation.t
  M t/Tree/Node.t
  M t/Tree/TreeIO.t
  M t/Tree/TreeIO/newick.t
  M t/Tree/TreeIO/nhx.t
  A t/data/biorecipe.nhx
  A t/data/ex1.nucl.nhx
  A t/data/nhx-bacteria.nhx
  A t/data/tol-2010-02-18.nhx
  A t/data/wellcome_tol.nhx

Log Message:
-----------
Merge remote branch 'upstream/master'


Commit: e56f436d16cddcc1660c046e4d67d05122ecce9f
    https://github.com/bioperl/bioperl-live/commit/e56f436d16cddcc1660c046e4d67d05122ecce9f
Author: Jason Stajich <jason at bioperl.org>
Date:   2010-11-09 (Tue, 09 Nov 2010)

Changed paths:
  A Bio/DB/Tree/Node.pm
  A Bio/DB/Tree/Store/DBI/SQLite.pm

Log Message:
-----------
Merge branch 'topic/tree_dbsqlite_memoryfix' of github.com:bioperl/bioperl-live