May 2010 Archives by subject

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Starting: Sun May 2 06:09:51 EDT 2010
Ending: Sun May 30 19:33:39 EDT 2010
Messages: 201

• [Bioperl-guts-l] [16959] bioperl-live/trunk/Bio/Assembly/Contig.pm: typo   Florent E Angly
• [Bioperl-guts-l] [16960] bioperl-live/trunk/Bio/Assembly/Singlet.pm: Protect singlet against the effect of gaps on their LocatableSeq end   Florent E Angly
• [Bioperl-guts-l] [16961] bioperl-live/trunk: The content of the assembly ( the contigs and singlets) is now updated when a dissolved or cross-contig spectrum is determined   Florent E Angly
• [Bioperl-guts-l] [16962] bioperl-live/trunk/t/Assembly/ContigSpectrum.t: small cleaning   Florent E Angly
• [Bioperl-guts-l] [16963] bioperl-live/trunk/Bio/Tools/Phylo/PAML.pm: prevent PAML parser from prematurely processing seqs.   Dave Messina
• [Bioperl-guts-l] [16964] bioperl-live/trunk: Main change:   Florent E Angly
• [Bioperl-guts-l] [16965] bioperl-live/trunk/Bio/Assembly/Tools/ContigSpectrum.pm: Some cleaning of Bio::Assembly::ContigSpectrum   Florent E Angly
• [Bioperl-guts-l] [16966] bioperl-live/trunk: Added BioPerl recommended dependency: Sort:: Naturally   Florent E Angly
• [Bioperl-guts-l] [16967] bioperl-live/trunk/Bio/Assembly/Tools/ContigSpectrum.pm: Bio:: Assembly::Tools::ContigSpectrum cleaning, POD update and checking that the module Graph::Undirected is installed   Florent E Angly
• [Bioperl-guts-l] [16968] bioperl-live/trunk: Added serious tests of Bio::Assembly::Singlet, changes in Bio::Assembly::Singlet and Contig   Florent E Angly
• [Bioperl-guts-l] [16969] bioperl-live/trunk/Bio/Assembly: Bio::Assembly::IO:: ace addendum to write quality scores for contigs that don't have any   Florent E Angly
• [Bioperl-guts-l] [16970] bioperl-live/trunk/Bio/SearchIO/blast.pm: Razi' s patch for parsing out the algorithm reference, gets tests working again   Christopher John Fields
• [Bioperl-guts-l] [16971] bioperl-live/trunk/t/data/bug2869.tree: missing test file   Christopher John Fields
• [Bioperl-guts-l] [16972] bioperl-live/trunk/t/Tools/Run/RemoteBlast_rpsblast.t: make test less prone to volatile changes   Christopher John Fields
• [Bioperl-guts-l] [16973] bioperl-live/trunk/Bio/Search/Hit/ModelHit.pm: use settable n, fall back to num_hsps (more consistent with recent changes)   Christopher John Fields
• [Bioperl-guts-l] [16974] bioperl-live/trunk/t/SearchIO: HSP n defaults to 1 ( must have at least one HSP used for score/e-val/p-val)   Christopher John Fields
• [Bioperl-guts-l] [16975] bioperl-live/trunk/t: remote database update, local dump file needed to be updated to match remote database change   Christopher John Fields
• [Bioperl-guts-l] [16976] bioperl-live/trunk/t/LocalDB/SeqFeature.t: load Bio::DB::Fasta ( this fails with SQLite tests)   Christopher John Fields
• [Bioperl-guts-l] [16977] bioperl-live/trunk/t/Map/Map.t: remote change in ensembl, make a little less prone to future changes   Christopher John Fields
• [Bioperl-guts-l] [16978] bioperl-live/trunk/t/SearchIO/Tiling.t: 1170 -> 1770 (matches data)   Christopher John Fields
• [Bioperl-guts-l] [16979] bioperl-live/trunk/Bio/DB/TFBS/transfac_pro.pm: commenting out a section of code fixes test crashes from improperly munged data .   Christopher John Fields
• [Bioperl-guts-l] [16980] bioperl-live/trunk/t/Assembly/Assembly.t: rework assembly tests to be more modular, should make it easier to add more as needed, turn others off, etc   Christopher John Fields
• [Bioperl-guts-l] [16981] bioperl-live/trunk/Bio/SeqIO/genbank.pm: [bug 3073]   Christopher John Fields
• [Bioperl-guts-l] [16982] bioperl-live/trunk/Bio/SearchIO/fasta.pm: [bug 3058]   Christopher John Fields
• [Bioperl-guts-l] [16983] bioperl-live/trunk: [bug 3076]   Christopher John Fields
• [Bioperl-guts-l] [16984] bioperl-hmmer3/: Amended alignment extraction code in hmmer3 SearchIO parser to correctly extract query and hit strings from a hsp .   Thomas J. Sharpton
• [Bioperl-guts-l] [Bioperl-l] Ohloh update   Chris Fields
• [Bioperl-guts-l] [bioperl/Bio-FeatureIO] a5c1a1: add test files from branch back to master   noreply at github.com
• [Bioperl-guts-l] [bioperl/Bio-FeatureIO] a95133: add default .shipit file   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-db-test] dc08a6: test commit hook from bioperl-db   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-hmmer3] 013e20: cleaning up repo by removing hmmer.pm (v2) and tmp...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-hmmer3] 41a916: SearchIO::hmmer3 Start basic unit test for hmmscan...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-hmmer3] 5abee3: SearchIO::hmmer3 Save the full sequence score, add...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 0064e2: Bio::SeqIO::embl Add test case for bug #3086   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 00793f: change default perms to remove +x for a module   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 02657e: test forking and pull requests   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 0398e8: [bug 3058]   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 09aa1b: non-matching VERSION removed   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 0f84f7: [bug 3076]   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 0f84f7: [bug 3076]   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 0f972a: remove debugging   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 10fff6: docpatch to examples/longorf.pl   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 13af40: fix coordinate logic error, patch courtesy Ha X. D...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 13af40: fix coordinate logic error, patch courtesy Ha X. D...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 144bdf: revert last commit   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 147a8d: bioperl after 0.04   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 166d6b: version increase for minor patch   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 21caaf: test bioperl-live post-commit hook to bioperl-guts   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 22756e: [2515] Trying to get the ball rolling, but already...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 259320: This commit was manufactured by cvs2svn to create ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 2618d3: initial list of file types we do not want in the r...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 277039: commit some simple fixes to EUtilities print outpu...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 277039: commit some simple fixes to EUtilities print outpu...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 2c877f: [bug_2515] Got 14 tests passing.   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 3198b2: Simplifying further since there was no response to...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 319a6e: Added frame to the column map.   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 321669: *** empty log message ***   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 38dbd4: minor tweak to tests   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 3a2458: mysql adaptor now builds summary (coverage) statis...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 3e1518: s/Subversion/Git/ and testing git   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 46f426: add no_index meta for PrimarySeqI example (should ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 48d978: Padding the consensus sequence for 454 ACE variant   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 4b74f5: fix brittle test based (possibly changing) file si...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 4e610b: add updated tree nexml files, old files for compar...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 54fa3f: retest hooks   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 55556b: Examples for using Bio::SearchIO::psiblast and Bio...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 56f956: We're now working toward 1.6.1_1 as far as I know.   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 5ac75f: phase and frame are interchangeable for now   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 5f3341: Fixed VERSION number in the pod.   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 5f45de: Revert "return unless a taxid is given"   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 5fcfaa: make assembly tests a little easier re: number of ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 675713: fixed ensembl specific 07 branch   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 6a3d9f: Revert "Return features as the same type of object...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 6a3d9f: Revert "Return features as the same type of object...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 6a3d9f: Revert "Return features as the same type of object...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 6f3756: Remove unused Bio/   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 73b33e: [2515] Adding verbatim from ticket, so I can expli...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 7470ac: berkeleydb adaptor generating summary statistics m...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 859408: Update pod and make get_trace_data() return the cu...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 87c530: Implemented the 454 Newbler ACE assembly variant   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 8a91c2: more Changes, ellipses indicate more needs to be a...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 8ac5f4: fixed wrong interpretation of locations in bed fil...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 8c8682: fix odd use of isa, popping up with latest Bio::Ph...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 8f024d: experimental ontology caching   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 95025c: return unless taxid is given   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 96523f: updated expected test data for updated nexml file   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 970958: var must be defined when using in a string or with...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 974abf: gene coverage stats seem to be working, , , basically   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 974abf: gene coverage stats seem to be working, , , basically   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 99f57c: can't lookup an undefined value as an executable   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] 9d8da8: merge HEAD changes in PSL parsing   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] a32ef7: not sure why these aren't in trunk, but add defaul...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] a37319: General SearchIO speed-up   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] a47a4a: Replaced call to phased out each_synonym by get_sy...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] a60b74: refactored ORF finding in Bio::PrimarySeqI, in ord...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] a850b2: return unless a taxid is given   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] a91480: [Freaky-dev] Minor bugfix to the lod track fuzzine...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] acb58b: if Bio::DB::Taxonomy::entrez cannot load XML::Twig...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] afe3ed: fix gff3_flag full variable name   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] b1c30f: can't use uc/lc with possibly undefined variables ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] b1ff67: Declaring $buffer in taste_file() to prevent unini...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] b7af73: This commit was manufactured by cvs2svn to create ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] b7af73: This commit was manufactured by cvs2svn to create ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] b7af73: This commit was manufactured by cvs2svn to create ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] b7af73: This commit was manufactured by cvs2svn to create ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] b7af73: This commit was manufactured by cvs2svn to create ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] b8ae20: can now handle phylip files with leading blank lin...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] b8ae20: can now handle phylip files with leading blank lin...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] b991c2: bug in FeatureIO, TODO demonstrates the problem   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] c0c0f6: uc/lc must have defined var (perl 5.12)   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] c86c04: add some file cleanup from samtools testing   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] cbae79: strand() is a set of fixed types, throw if invalid...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] cbed98: small doc fix, more to come   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] cbed98: small doc fix, more to come   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] cd7b82: don't add :bins to summary feature type; it confus...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] cf8909: update files, expected test data for nexml (AlignI...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] d4a0f3: add basic shipit file   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] e02a99: This commit was manufactured by cvs2svn to create ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] e2bae6: Fixed nasty RangeI bug in branch as well   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] e71c10: Change in Bio::Assembly::IO::ace logic to remove w...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] e71c10: Change in Bio::Assembly::IO::ace logic to remove w...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] e7e42c: The Berkeleydb adaptor is now building summary sta...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] f3777e: Updated ./Changes regarding the 454 Newbler ACE va...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] f82271: a few more ignored files/directories   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] fa478b: fixes for ensembl dumps   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] fcd90e: Return features as the same type of object as the ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] fcd90e: Return features as the same type of object as the ...   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-live] fd5ef0: undoing an accidental commit--sorry about that   noreply at github.com
• [Bioperl-guts-l] [bioperl/bioperl-test] 270267: test commit hook from bioperl-db   noreply at github.com
• [Bioperl-guts-l] [Bug 2429] Bio::FeatureIO gff3 fails to parse canonical GFF3 file from GFF3 spec   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2513] creating a Bio::SeqFeature::Annotation object downloads the entire so.obo   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2515] GenBank XML parser   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2515] GenBank XML parser   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2700] [TODO] Refactor Build.PL   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2700] [TODO] Refactor Build.PL   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2700] [TODO] Refactor Build.PL   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2700] [TODO] Refactor Build.PL   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2702] [TODO] scripts recopied upon each call to './Build test'   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2702] [TODO] scripts recopied upon each call to './Build test'   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2763] [TODO] Refactor Bio::FeatureIO   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2912] Some of the scripts linked here are not found   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2912] Some of the scripts linked here are not found   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2912] Some of the scripts linked here are not found   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2912] Some of the scripts linked here are not found   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2912] Some of the scripts linked here are not found   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2912] Some of the scripts linked here are not found   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2912] Some of the scripts linked here are not found   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2912] Some of the scripts linked here are not found   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2922] [TODO] open() directive causing installation to fail   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3053] incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3053] incorrect formatting of LOCUS line in genbank output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3058] Bio::SearchIO is unable to parse fasta35 output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3058] Bio::SearchIO is unable to parse fasta35 output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3065] Bio::FeatureIO::gff _handle_feature (BioPerl 1.6.1) doesn't cope with ; <space> delimited attributes   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3072] New: Bio::Tools::Run::Genewise doesn't accept parameters as described in its documentation   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3073] New: problem during parsing GenBank file obtained from RDP   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3073] problem during parsing GenBank file obtained from RDP   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3075] New: Bio::Tools::Run::Alignment::MAFFT: not able to specify alignment run parameters   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3076] New: Wrong strand information read (Bio::AlignIO/xmfa.pm)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3076] Wrong strand information read (Bio::AlignIO/xmfa.pm)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3077] Bio::SimpleAlign->slice computes wrong start/end for minus strand sliced sequence   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3077] Bio::SimpleAlign->slice computes wrong start/end for minus strand sliced sequence   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3077] Bio::SimpleAlign->slice computes wrong start/end for minus strand sliced sequence   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3077] Bio::SimpleAlign->slice computes wrong start/end for minus strand sliced sequence   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3077] Bio::SimpleAlign->slice computes wrong start/end for minus strand sliced sequence   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3077] New: Bio::SimpleAlign->slice computes wrong start/end for minus strand sliced sequence   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3078] Bio::Tools::Run::StandAloneBlastPlus -> remote blast not working   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3078] New: Bio::Tools::Run::StandAloneBlastPlus -> remote blast not working   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3084] HSPI, frac_identical gives wrong results   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3084] HSPI, frac_identical gives wrong results   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3084] New: HSPI, frac_identical gives wrong results   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3085] New: CommandExts and passing an arrays of files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3086] Bio::SeqIO EMBL mis-parses long tags, and subsequently writes wong EMBL files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3086] Bio::SeqIO EMBL mis-parses long tags, and subsequently writes wong EMBL files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3086] Bio::SeqIO EMBL mis-parses long tags, and subsequently writes wong EMBL files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3086] Bio::SeqIO EMBL mis-parses long tags, and subsequently writes wong EMBL files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3086] Bio::SeqIO EMBL mis-parses long tags, and subsequently writes wong EMBL files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3086] Bio::SeqIO EMBL mis-parses long tags, and subsequently writes wong EMBL files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3086] Bio::SeqIO EMBL mis-parses long tags, and subsequently writes wong EMBL files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 3086] New: Bio::SeqIO EMBL mis-parses long tags, and subsequently writes wong EMBL files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [GitHub] cjfields commented on a commit [bioperl/bioperl-live 02657e0]   GitHub
• [Bioperl-guts-l] [GitHub] cjfields commented on a commit [bioperl/bioperl-live c86c048]   GitHub
• [Bioperl-guts-l] [GitHub] cjfields commented on a commit [bioperl/bioperl-live c86c048]   GitHub
• [Bioperl-guts-l] [GitHub] cjfields commented on a commit [bioperl/bioperl-live fcd90e0]   GitHub
• [Bioperl-guts-l] [GitHub] cjfields commented on a commit [bioperl/bioperl-live fcd90e0]   Dave Messina
• [Bioperl-guts-l] [GitHub] cjfields commented on a commit [bioperl/bioperl-live fcd90e0]   GitHub
• [Bioperl-guts-l] [GitHub] cjfields commented on a commit [bioperl/bioperl-live fcd90e0]   GitHub
• [Bioperl-guts-l] [GitHub] cjfields sent you a pull request from cjfields/bioperl-live   GitHub
• [Bioperl-guts-l] [GitHub] DaveMessina commented on a commit [bioperl/bioperl-live fcd90e0]   GitHub
• [Bioperl-guts-l] [GitHub] hyphaltip sent you a pull request from bioperl/bioperl-live   GitHub
• [Bioperl-guts-l] [GitHub] hyphaltip sent you a pull request from hyphaltip/bioperl-live   GitHub
• [Bioperl-guts-l] [GitHub] hyphaltip sent you a pull request from hyphaltip/bioperl-live   GitHub
• [Bioperl-guts-l] [GitHub] jhannah commented on a commit [bioperl/bioperl-live 8ac5f4d]   GitHub
• [Bioperl-guts-l] [GitHub] rbuels commented on a commit [bioperl/bioperl-live fcd90e0]   GitHub
• [Bioperl-guts-l] [GitHub] rbuels commented on a commit [bioperl/bioperl-live fcd90e0]   GitHub
• [Bioperl-guts-l] [GitHub] rbuels commented on a commit [bioperl/bioperl-live fcd90e0]   GitHub
• [Bioperl-guts-l] [GitHub] vinanna sent you a pull request from vinanna/bioperl-live   GitHub
• [Bioperl-guts-l] [Gravatar] Verify email addition   Gravatar
• [Bioperl-guts-l] [Gravatar] Verify email addition   Robert Buels
• [Bioperl-guts-l] Collaborators getting pull requests by default [Repo issues]   tekkub
• [Bioperl-guts-l] nightly builds   Chris Fields

Last message date: Sun May 30 19:33:39 EDT 2010
Archived on: Sun May 30 19:33:43 EDT 2010

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