[Bioperl-guts-l] [bioperl/bioperl-live] 4ee526: [bug 3122] catch seek calls on the unseekable (tha...

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Branch: refs/heads/branch-1-6
Home:   http://github.com/bioperl/bioperl-live

Commit: 4ee526b24557ae40c39a0090ef95a5d42d186c48
    http://github.com/bioperl/bioperl-live/commit/4ee526b24557ae40c39a0090ef95a5d42d186c48
Author: Chris Fields <cjfields at bioperl.org>
Date:   2010-07-29 (Thu, 29 Jul 2010)

Changed paths:
  M Bio/Tools/GuessSeqFormat.pm
  M Changes

Log Message:
-----------
[bug 3122] catch seek calls on the unseekable (thanks to Stefan and Roy)


Commit: b31f53500ff6e58c44a51d6e299ed5bef75f5a6a
    http://github.com/bioperl/bioperl-live/commit/b31f53500ff6e58c44a51d6e299ed5bef75f5a6a
Author: Chris Fields <cjfields at bioperl.org>
Date:   2010-07-29 (Thu, 29 Jul 2010)

Changed paths:
  M Bio/DB/Fasta.pm
  M Changes
  M t/LocalDB/DBFasta.t
  M t/data/dbfa/1.fa

Log Message:
-----------
[bug 3126] catch description (patch courtesy Toshihiko Akiba); test added


Commit: b0b52cc1eebeef12f5704cbf10a99e231c3a7856
    http://github.com/bioperl/bioperl-live/commit/b0b52cc1eebeef12f5704cbf10a99e231c3a7856
Author: Robert Buels <rmb32 at cornell.edu>
Date:   2010-07-30 (Fri, 30 Jul 2010)

Changed paths:
  A maintenance/big_split/file_classification.csv
  A maintenance/big_split/rbuels_notes.txt

Log Message:
-----------
dir in maint for working on dynamiting the monolith


Commit: c1abbd13a50eff41f9fc5d3780765e6a89ead83a
    http://github.com/bioperl/bioperl-live/commit/c1abbd13a50eff41f9fc5d3780765e6a89ead83a
Author: Nathan Liles <nml5566 at dev.open-bio.org>
Date:   2010-07-30 (Fri, 30 Jul 2010)

Changed paths:
  M Bio/Tools/GFF.pm
  M Build.PL

Log Message:
-----------
Force ID field for all gb files converted to gff3


Commit: 7f6ac0bcf4da43b157452793cd734eae0858fc39
    http://github.com/bioperl/bioperl-live/commit/7f6ac0bcf4da43b157452793cd734eae0858fc39
Author: Chris Fields <cjfields at bioperl.org>
Date:   2010-07-30 (Fri, 30 Jul 2010)

Changed paths:
  M ide/bioperl-mode/dist/bioperl-mode-xemacs.tar
  M ide/bioperl-mode/dist/bioperl-mode.tar

Log Message:
-----------
sync tars over from master


Commit: 1766d4ede599f6ffcb3bd4c2334674e849414369
    http://github.com/bioperl/bioperl-live/commit/1766d4ede599f6ffcb3bd4c2334674e849414369
Author: Chris Fields <cjfields at bioperl.org>
Date:   2010-07-30 (Fri, 30 Jul 2010)

Changed paths:
  M Bio/DB/Fasta.pm
  M Bio/Tools/GFF.pm
  M Bio/Tools/GuessSeqFormat.pm
  M Build.PL
  M Changes
  A maintenance/big_split/file_classification.csv
  A maintenance/big_split/rbuels_notes.txt
  M t/LocalDB/DBFasta.t
  M t/data/dbfa/1.fa

Log Message:
-----------
Merge branch 'master' into branch-1-6