[Bioperl-guts-l] [Bug 2764] New: enhance SwissProt retreival by id using IDTracker

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Feb 18 10:24:14 EST 2009


http://bugzilla.open-bio.org/show_bug.cgi?id=2764

           Summary: enhance SwissProt retreival by id using IDTracker
           Product: BioPerl
           Version: main-trunk
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: Core Components
        AssignedTo: bioperl-guts-l at bioperl.org
        ReportedBy: heikki at ebi.ac.uk


Here is a blog entry describing how to use Expacy IDTracker to find a new id
based on old one:

http://nsaunders.wordpress.com/2008/03/07/missing-links-using-swissprot-idtracker-in-your-code/

Would be nice to add this  into BioPerl Bio::DB::SwissProt->get_Seq_by_id().
(Although I still do not understand why anyone would insist on using IDs rather
than accession numbers where this is done automatically.)

This would be a good novice project.


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