[Bioperl-guts-l] [Bug 2764] New: enhance SwissProt retreival by id using IDTracker
bugzilla-daemon at portal.open-bio.org
bugzilla-daemon at portal.open-bio.org
Wed Feb 18 10:24:14 EST 2009
http://bugzilla.open-bio.org/show_bug.cgi?id=2764
Summary: enhance SwissProt retreival by id using IDTracker
Product: BioPerl
Version: main-trunk
Platform: PC
OS/Version: Linux
Status: NEW
Severity: enhancement
Priority: P2
Component: Core Components
AssignedTo: bioperl-guts-l at bioperl.org
ReportedBy: heikki at ebi.ac.uk
Here is a blog entry describing how to use Expacy IDTracker to find a new id
based on old one:
http://nsaunders.wordpress.com/2008/03/07/missing-links-using-swissprot-idtracker-in-your-code/
Would be nice to add this into BioPerl Bio::DB::SwissProt->get_Seq_by_id().
(Although I still do not understand why anyone would insist on using IDs rather
than accession numbers where this is done automatically.)
This would be a good novice project.
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