September 2007 Archives by date

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Starting: Sun Sep 2 18:46:08 EDT 2007
Ending: Fri Sep 28 14:00:48 EDT 2007
Messages: 126

• [Bioperl-guts-l] bioperl-db/t 12ontology.t,1.2,1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-db/Bio/DB/BioSQL TermAdaptor.pm, 1.12, 1.13   Christopher John Fields
• [Bioperl-guts-l] bioperl-db/t 12ontology.t,1.3,1.4   Christopher John Fields
• [Bioperl-guts-l] [Bug 2355] New: recursion issues in bioperl-db tests   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2355] recursion issues in bioperl-db tests   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2355] recursion issues in bioperl-db tests   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Index Blast.pm,1.31,1.32   Christopher John Fields
• [Bioperl-guts-l] [Bug 2123] Add id_parser() method to Bio::Index::Blast   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2165] Bio::SeqIO does not write correct taxonomy data in SwissProt format   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2184] segmentation error during BioPerl 1.5.2 installation   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2281] unable to copy a sequence from one namespace to another one   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-db/Bio/DB/BioSQL/mysql SpeciesAdaptorDriver.pm, 1.9, 1.10   Christopher John Fields
• [Bioperl-guts-l] [Bug 2287] performance problem with MySQL (SpeciesAdaptorDriver::get_classification)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2213] crashes on downloading NCBI records   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2213] crashes on downloading NCBI records   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2213] crashes on downloading NCBI records   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2213] crashes on downloading NCBI records   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t RNA_SearchIO.t,1.6,1.7   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO infernal.pm,1.9,1.10   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data purine_v081.infernal, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO infernal.pm,1.10,1.11   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t RNA_SearchIO.t,1.7,1.8   Christopher John Fields
• [Bioperl-guts-l] [Bug 2356] New: Bio::TreeIO::pag outputs   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live Build.PL,1.23,1.24   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run Build.PL,1.4,1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-db Build.PL,1.5,1.6   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network Build.PL,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live LICENSE,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run LICENSE,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-db LICENSE,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network LICENSE,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph generic.pm, 1.49, 1.50 segmented_keyglyph.pm, 1.7, 1.8   Christopher John Fields
• [Bioperl-guts-l] [Bug 2357] New: RemoteBlast.pm module limits the number of hits returned   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2357] RemoteBlast.pm module limits the number of hits returned   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2357] RemoteBlast.pm module limits the number of hits returned   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2357] RemoteBlast.pm module limits the number of hits returned   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run RemoteBlast.pm, 1.46, 1.47   Christopher John Fields
• [Bioperl-guts-l] [Bug 2357] RemoteBlast.pm module limits the number of hits returned   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio AnnotatableI.pm,1.17,1.18   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, 1.31, 1.32 FeatureFile.pm, 1.88, 1.89   Lincoln Stein
• [Bioperl-guts-l] [Bug 2358] New: New assembly parser/reader - Bio::Assembly::IO::tigr   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2358] New assembly parser/reader - Bio::Assembly::IO::tigr   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2358] New assembly parser/reader - Bio::Assembly::IO::tigr   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2358] New assembly parser/reader - Bio::Assembly::IO::tigr   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2358] New assembly parser/reader - Bio::Assembly::IO::tigr   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t Assembly.t,1.13,1.14   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Assembly/IO tigr.pm,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] [Bug 2358] New assembly parser/reader - Bio::Assembly::IO::tigr   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2358] New assembly parser/reader - Bio::Assembly::IO::tigr   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2354] Bio::SeqIO::phd enhancement   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2354] Bio::SeqIO::phd enhancement   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2354] Bio::SeqIO::phd enhancement   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2354] Bio::SeqIO::phd enhancement   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t Assembly.t,1.14,1.15   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Assembly/IO tigr.pm,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] [Bug 2358] New assembly parser/reader - Bio::Assembly::IO::tigr   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t phd.t,1.14,1.15   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO phd.pm,1.26,1.27   Christopher John Fields
• [Bioperl-guts-l] [Bug 2354] Bio::SeqIO::phd enhancement   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Assembly Scaffold.pm,1.15,1.16   Christopher John Fields
• [Bioperl-guts-l] [Bug 2350] Bio::Assembly::Scaffold->add_singlet has a bug   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2275] GO Upload with bp_load_ontology.pl throws errors   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2358] New assembly parser/reader - Bio::Assembly::IO::tigr   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Assembly/IO tigr.pm,1.2,1.3   Christopher John Fields
• [Bioperl-guts-l] [Bug 2358] New assembly parser/reader - Bio::Assembly::IO::tigr   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO entrezgene.pm,1.31,1.32   Stefan Kirov
• [Bioperl-guts-l] bioperl-live/Bio/Align PairwiseStatistics.pm, 1.11, 1.12   Stefan Kirov
• [Bioperl-guts-l] [Bug 2358] New assembly parser/reader - Bio::Assembly::IO::tigr   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2352] distance method bug in Bio::Tree::TreeFunctionsI   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2352] distance method bug in Bio::Tree::TreeFunctionsI   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2358] New assembly parser/reader - Bio::Assembly::IO::tigr   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2352] distance method bug in Bio::Tree::TreeFunctionsI   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tree TreeFunctionsI.pm, 1.37, 1.38   Christopher John Fields
• [Bioperl-guts-l] [Bug 2352] distance method bug in Bio::Tree::TreeFunctionsI   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/examples/db getGenBank.pl,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools tRNAscanSE.pm,1.7,1.8   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Annotation Reference.pm, 1.31, 1.32 Comment.pm, 1.18, 1.19 Target.pm, 1.13, 1.14 Collection.pm, 1.26, 1.27 Tree.pm, 1.4, 1.5 DBLink.pm, 1.24, 1.25 StructuredValue.pm, 1.13, 1.14 OntologyTerm.pm, 1.20, 1.21 SimpleValue.pm, 1.24, 1.25   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph diamond.pm, 1.14, 1.15   Lincoln Stein
• [Bioperl-guts-l] [Bug 2367] New: Bio::DB::Qual   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2367] Bio::DB::Qual   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2367] Bio::DB::Qual   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2367] Bio::DB::Qual   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2367] Bio::DB::Qual   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2367] Bio::DB::Qual   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm,1.136,1.137   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gtf.pm,1.5,1.6   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gff.pm,1.54,1.55   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph image.pm,1.5,1.6   Lincoln Stein
• [Bioperl-guts-l] [Bug 2368] New: Flag to write quality scores on one line in Bio::SeqIO::qual   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2368] Flag to write quality scores on one line in Bio::SeqIO::qual   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.139,1.140   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO bed.pm,1.11,1.12   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2369] New: Bio::SeqIO::interpro depends on XML::DOM::XPath   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2370] New: Bio::Assembly::Scaffold Source   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2369] Bio::SeqIO::interpro depends on XML::DOM::XPath   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP BlastHSP.pm, 1.35, 1.36   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gff.pm,1.55,1.56   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2370] Bio::Assembly::Scaffold Source   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2370] Bio::Assembly::Scaffold Source   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2370] Bio::Assembly::Scaffold Source   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2184] segmentation error during BioPerl 1.5.2 installation   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1528] Removing sequences from mysql using bioentry-id   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2086] EMBL parser should not look for FT, DE and other line prefixes when it is ID line   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2086] EMBL parser should not look for FT, DE and other line prefixes when it is ID line   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2373] New: Handling of multiple species or hybrid species in EMBL records   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2373] Handling of multiple species or hybrid species in EMBL records   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2173] Bio::Graphics::Glyph::stackedplot always generates homogenous histogram   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2191] Bio::Tree::Node is missing delete_edge function   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2219] Bio::Tree - Trees generated from subtrees contain extraneous branchlength information   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tree TreeFunctionsI.pm, 1.38, 1.39   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tree TreeFunctionsI.pm, 1.39, 1.40   Christopher John Fields
• [Bioperl-guts-l] [Bug 2219] Bio::Tree - Trees generated from subtrees contain extraneous branchlength information   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2313] './Build test' stalls from current cvs bioperl-run   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2342] blastall crash & StandAloneBlast (originally described by Matthew Laird)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2219] Bio::Tree - Trees generated from subtrees contain extraneous branchlength information   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/PopGen IO.pm,1.9,1.10   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Annotated.pm, 1.40, 1.41   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Ontology DocumentRegistry.pm, 1.13, 1.14   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Ontology DocumentRegistry.pm, 1.14, 1.15   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Align Utilities.pm,1.27,1.28   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP ModelHSP.pm,1.3,1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO stockholm.pm,1.30,1.31   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.140,1.141   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO stockholm.pm,1.31,1.32   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature TypedSeqFeatureI.pm, 1.9, 1.10   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.141,1.142   Jason Stajich

Last message date: Fri Sep 28 14:00:48 EDT 2007
Archived on: Fri Sep 28 14:00:51 EDT 2007

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