[Bioperl-guts-l] [Bug 2357] RemoteBlast.pm module limits the number of hits returned

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2357





------- Comment #3 from cjfields at uiuc.edu  2007-09-05 16:10 EST -------
Acc. to the URLAPI for NCBI's QBlast:

http://www.ncbi.nlm.nih.gov/staff/tao/URLAPI/new/node13.html

descriptions and alignments must be set via PUT and GET (submission and
request), as one can potentially retrieve BLAST reports in multiple formats
using the same RID.  

Adding these lines works for me:

$Bio::Tools::Run::RemoteBlast::HEADER{'DESCRIPTIONS'} = 500;
$Bio::Tools::Run::RemoteBlast::HEADER{'ALIGNMENTS'} = 500;
$Bio::Tools::Run::RemoteBlast::RETRIEVALHEADER{'DESCRIPTIONS'} = 500;
$Bio::Tools::Run::RemoteBlast::RETRIEVALHEADER{'ALIGNMENTS'} = 500;

I'm a bit reluctant to change much with RemoteBlast at the moment as we're
planning a complete revamp of the various BLAST utilities.  Roger Hall might
comment on this further so I'll leave it up for now.


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