October 2007 Archives by author

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Starting: Mon Oct 1 11:18:15 EDT 2007
Ending: Wed Oct 31 05:45:30 EDT 2007
Messages: 125

• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Lagan.pm, 1.22, 1.23   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo PhyloBase.pm, 1.6, 1.7   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Baseml.pm, 1.8, 1.9   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Codeml.pm, 1.46, 1.47   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo Gumby.pm,1.2,1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gff.pm,1.56,1.57   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Annotated.pm, 1.41, 1.42   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t Assembly.t, 1.15, 1.16 SeqFeatAnnotated.t, 1.2, 1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t Gumby.t,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools GFF.pm,1.67,1.68   Scott Cain
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF genbank2gff3.PLS, 1.15, 1.16   Scott Cain
• [Bioperl-guts-l] biosql-schema/scripts phyinit.pl,NONE,1.1   James C. Estill
• [Bioperl-guts-l] biosql-schema/scripts phyimport.pl,NONE,1.1   James C. Estill
• [Bioperl-guts-l] biosql-schema/scripts phyexport.pl,NONE,1.1   James C. Estill
• [Bioperl-guts-l] biosql-schema/scripts phyopt.pl,NONE,1.1   James C. Estill
• [Bioperl-guts-l] biosql-schema/scripts phyreport.pl,NONE,1.1   James C. Estill
• [Bioperl-guts-l] biosql-schema/scripts phymod.pl,NONE,1.1   James C. Estill
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.31, 1.32   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO infernal.pm,1.11,1.12   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio Range.pm,1.29,1.30   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm,1.137,1.138   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools Glimmer.pm,1.10,1.11   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools Glimmer.pm,1.11,1.12   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Genpred.t,1.28,1.29   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Microarray - New directory   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Microarray/Tools - New directory   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Microarray/Tools ReseqChip.pm, NONE, 1.1 MitoChipV2Parser.pm, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB EUtilities.pm, 1.44, 1.45 EUtilParameters.pm, 1.7, 1.8   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data/dbqual - New directory   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t DBQual.t,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB Qual.pm,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data/dbqual 1.qual, NONE, 1.1 3.qual, NONE, 1.1 2.qual, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO qual.pm,1.34,1.35   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Align PairwiseStatistics.pm, 1.12, 1.13   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t AlignStats.t,1.17,1.18   Christopher John Fields
• [Bioperl-guts-l] bioperl-db/Bio/DB/BioSQL OBDA.pm,1.3,1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-db/Bio/DB/DBI base.pm,1.10,1.11   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t exp.t,1.6,1.7   Christopher John Fields
• [Bioperl-guts-l] bioperl-ext/Bio/SeqIO/staden/t - New directory   Christopher John Fields
• [Bioperl-guts-l] bioperl-ext/Bio/SeqIO/staden/t/staden/data - New directory   Christopher John Fields
• [Bioperl-guts-l] bioperl-ext/Bio/SeqIO/staden/t/staden - New directory   Christopher John Fields
• [Bioperl-guts-l] bioperl-ext/Bio/SeqIO/staden/t/staden/data readtest.exp, NONE, 1.1 readtestabi.fa, NONE, 1.1 readtestref.scf, NONE, 1.1 readtest.ctf, NONE, 1.1 readtest.pln, NONE, 1.1 readtest.abi, NONE, 1.1 readtest.ztr, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-ext/Bio/SeqIO/staden/t staden_read.t, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-ext/Bio/SeqIO/staden META.yml, NONE, 1.1 MANIFEST, NONE, 1.1 README, NONE, 1.1 CHANGES, NONE, 1.1 read.xs, NONE, 1.1 read.pm, 1.13, 1.14 Makefile.PL, 1.5, 1.6   Christopher John Fields
• [Bioperl-guts-l] bioperl-ext/Bio/SeqIO/staden test.pl,1.2,NONE   Christopher John Fields
• [Bioperl-guts-l] bioperl-ext/Bio/SeqIO/staden read.pm, 1.14, 1.15 read.xs, 1.1, 1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t PrimarySeq.t,1.26,1.27   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.32, 1.33   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t Genewise.t,1.10,1.11   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO wise.pm,1.8,1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Codeml.pm, 1.47, 1.48   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.54,1.55   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor berkeleydb.pm, 1.29, 1.30 dbi.pm, 1.64, 1.65 memory.pm, 1.49, 1.50   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.33, 1.34   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor/dbi mysql.pm, 1.67, 1.68 oracle.pm, 1.10, 1.11 pg_fts.pm, 1.6, 1.7   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, 1.32, 1.33 FeatureFile.pm, 1.89, 1.90   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store berkeleydb.pm, 1.15, 1.16 memory.pm, 1.11, 1.12   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature Store.pm, 1.31, 1.32   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF Segment.pm,1.32,1.33   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph dna.pm,1.31,1.32   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/graphics render_msa.pl, NONE, 1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-live/scripts/graphics render_msa.pl, 1.1, 1.2   Albert Vilella
• [Bioperl-guts-l] [Bug 2086] EMBL parser should not look for FT, DE and other line prefixes when it is ID line   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2376] New: ID of match features in bp_search2gff.pl   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2377] New: Target tag format in bp_search2gff.pl   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2378] New: Getting strand of query/hit features in Bio::Search::HSP::GenericHSP   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2378] Getting strand of query/hit features in Bio::Search::HSP::GenericHSP   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2378] Getting strand of query/hit features in Bio::Search::HSP::GenericHSP   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2378] Getting strand of query/hit features in Bio::Search::HSP::GenericHSP   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2378] Getting strand of query/hit features in Bio::Search::HSP::GenericHSP   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2383] New: missing XML::DOM::Document error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2383] missing XML::DOM::Document error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2384] New: Segmentation Fault in Bio::Tools::dpAlign::pairwise_alignment_score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2384] Segmentation Fault in Bio::Tools::dpAlign::pairwise_alignment_score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2384] Segmentation Fault in Bio::Tools::dpAlign::pairwise_alignment_score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2384] Segmentation Fault in Bio::Tools::dpAlign::pairwise_alignment_score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2385] New: Bio::Align::PairwiseStatistics::score_nuc method   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2385] Bio::Align::PairwiseStatistics::score_nuc method   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2385] Bio::Align::PairwiseStatistics::score_nuc method   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2387] New: connect not allowed with PostgreSQL ident-based authentication   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2387] connect not allowed with PostgreSQL ident-based authentication   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2387] connect not allowed with PostgreSQL ident-based authentication   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2387] connect not allowed with PostgreSQL ident-based authentication   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2387] connect emits 'uninitialied value' messages with PostgreSQL ident-based authentication   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2219] Bio::Tree - Trees generated from subtrees contain extraneous branchlength information   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2367] Bio::DB::Qual   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2368] Flag to write quality scores on one line in Bio::SeqIO::qual   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2376] ID of match features in bp_search2gff.pl   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2377] Target tag format in bp_search2gff.pl   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2377] Target tag format in bp_search2gff.pl   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2376] ID of match features in bp_search2gff.pl   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2384] Segmentation Fault in Bio::Tools::dpAlign::pairwise_alignment_score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2385] Bio::Align::PairwiseStatistics::score_nuc method   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2387] connect emits 'uninitialied value' messages with PostgreSQL ident-based authentication   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2384] Segmentation Fault in Bio::Tools::dpAlign::pairwise_alignment_score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1508] SeqIO allows fasta to masquerade as genbank or gcg or ace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1508] SeqIO allows fasta to masquerade as genbank or gcg or ace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2385] Bio::Align::PairwiseStatistics::score_nuc method   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2384] Segmentation Fault in Bio::Tools::dpAlign::pairwise_alignment_score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2384] Segmentation Fault in Bio::Tools::dpAlign::pairwise_alignment_score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2384] Segmentation Fault in Bio::Tools::dpAlign::pairwise_alignment_score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2384] Segmentation Fault in Bio::Tools::dpAlign::pairwise_alignment_score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2388] New: Incorrect parsing of wu-blast report when echofilter option (of wu-blast) is used   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2388] Incorrect parsing of wu-blast report when echofilter option (of wu-blast) is used   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2388] Incorrect parsing of wu-blast report when echofilter option (of wu-blast) is used   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2389] New: load_seqdatabase.pl crashes on varchar(n)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2389] load_seqdatabase.pl crashes on varchar(n)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2391] New: query method does not return entire description in GenericHit   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2391] query method does not return entire description in GenericHit   bugzilla-daemon at portal.open-bio.org

Last message date: Wed Oct 31 05:45:30 EDT 2007
Archived on: Wed Oct 31 05:45:34 EDT 2007

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