May 2007 Archives by date

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Starting: Tue May 1 13:43:38 EDT 2007
Ending: Thu May 31 20:48:04 EDT 2007
Messages: 89

• [Bioperl-guts-l] bioperl-live/Bio/SearchIO infernal.pm,1.5,1.6   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO erpin.pm, 1.4, 1.5 rnamotif.pm, 1.5, 1.6   Christopher John Fields
• [Bioperl-guts-l] [Bug 2286] New: spliced_seq throws exception on Bio::DB::GFF::Feature object   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2286] spliced_seq throws exception on Bio::DB::GFF::Feature object   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/scripts/Bio-SeqFeature-Store bp_seqfeature_gff3.PLS, NONE, 1.1   Malcom Cook
• [Bioperl-guts-l] bioperl-live/scripts/Bio-SeqFeature-Store bp_seqfeature_gff3.PLS, 1.1, 1.2   Malcom Cook
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, 1.29, 1.30   Malcom Cook
• [Bioperl-guts-l] [Bug 2287] New: performance problem with MySQL (SpeciesAdaptorDriver::get_classification)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2287] performance problem with MySQL (SpeciesAdaptorDriver::get_classification)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2288] New: Bio::SeqIO::swiss throws when classification includes internal period   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2288] Bio::SeqIO::swiss throws when classification includes internal period   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio ParameterBaseI.pm,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO IteratedSearchResultEventBuilder.pm, 1.12, 1.13   Christopher John Fields
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO cross_match.pm, NONE, 1.1   Dave Messina
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result CrossMatchResult.pm, NONE, 1.1   Dave Messina
• [Bioperl-guts-l] bioperl-live/Bio/DB EUtilParameters.pm,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tree TreeFunctionsI.pm, 1.35, 1.36   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t/data bootstrap.tre,NONE,1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t Tree.t,1.13,1.14   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO newick.pm,1.40,1.41   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio TreeIO.pm,1.21,1.22   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Root RootI.pm,1.75,1.76   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run AbstractRunner.pm, 1.3, NONE JavaRunner.pm, 1.2, NONE   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Forester SDI.pm, 1.2, NONE   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio PullParserI.pm,1.10,1.11   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit BlastPullHit.pm, NONE, 1.1 PullHitI.pm, 1.2, 1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast_pull.pm,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data frac_problems.blast, 1.1, 1.2 frac_problems3.blast, 1.1, 1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP BlastPullHSP.pm, NONE, 1.1 PullHSPI.pm, 1.3, 1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result BlastPullResult.pm, NONE, 1.1 PullResultI.pm, 1.4, 1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t blast_pull.t,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit GenericHit.pm, 1.42, 1.43   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio PullParserI.pm,1.11,1.12   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit PullHitI.pm,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t hmmer_pull.t,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2293] New: Bio::Search::HSP::GenericHSP::_query_seq_feature infinity loop   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2293] Bio::Search::HSP::GenericHSP::_query_seq_feature infinity loop   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit BlastPullHit.pm, 1.1, 1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result BlastPullResult.pm, 1.1, 1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast_pull.pm,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t blast_pull.t,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data blast_no_hit_desc.txt, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP GenericHSP.pm, 1.75, 1.76   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2293] Bio::Search::HSP::GenericHSP::_query_seq_feature infinity loop   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP BlastPullHSP.pm, 1.1, 1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result BlastPullResult.pm, 1.2, 1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result BlastPullResult.pm, 1.3, 1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result BlastPullResult.pm, 1.4, 1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO SearchResultEventBuilder.pm, 1.44, 1.45   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run WrapperBase.pm, 1.34, 1.35   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run StandAloneNCBIBlast.pm, NONE, 1.1 StandAloneWUBlast.pm, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run StandAloneBlast.pm, 1.68, 1.69   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t StandAloneBlast.t,1.29,1.30   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2295] New: Using Bio::SeqIO causes a warning message   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2295] Using Bio::SeqIO causes a warning message   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2296] New: Guide me in overoming these errors for proper installation of Bioperl   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.136,1.137   Lincoln Stein
• [Bioperl-guts-l] [Bug 2296] Guide me in overoming these errors for proper installation of Bioperl   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2299] New: Bio::Tools::Glimmer needs workaround to deal with Glimmer 2.X/3.X producing plus strand predictions with start > end   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2299] Bio::Tools::Glimmer needs workaround to deal with Glimmer 2.X/3.X producing plus strand predictions with start > end   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2299] Bio::Tools::Glimmer needs workaround to deal with Glimmer 2.X/3.X producing plus strand predictions with start > end   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/DB/Biblio pdf.pm,1.7,NONE   Christopher John Fields
• [Bioperl-guts-l] [Bug 2300] New: two lines in incorrect order in SearchIO::   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2300] two lines in incorrect order in SearchIO::   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/Writer TextResultWriter.pm, 1.19, 1.20   Dave Messina
• [Bioperl-guts-l] [Bug 2300] two lines in incorrect order in Bio::SearchIO::Writer::TextResultWriter   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm,1.134,1.135   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph xyplot.pm, 1.32, 1.33   Lincoln Stein
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Root RootI.pm,1.76,1.77   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO SearchResultEventBuilder.pm, 1.45, 1.46   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo Gumby.pm,1.2,1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB Fasta.pm,1.47,1.48   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB Fasta.pm,1.48,1.49   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.133,1.134   Jason Stajich
• [Bioperl-guts-l] [Bug 2302] New: GFF3 attribute values unescaped prematurely in Bio::DB::SeqFeature::Store::GFF3Loader   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2303] New: SearchIO HSP object documentation talks about gaps meaning gap characters   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2303] SearchIO HSP object documentation talks about gaps meaning gap characters   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP BlastHSP.pm, 1.33, 1.34 BlastPullHSP.pm, 1.2, 1.3 GenericHSP.pm, 1.76, 1.77 HSPI.pm, 1.40, 1.41 PsiBlastHSP.pm, 1.12, 1.13 PullHSPI.pm, 1.4, 1.5   Dave Messina
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO megablast.pm,1.10,1.11   Dave Messina
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/Writer HSPTableWriter.pm, 1.18, 1.19 HitTableWriter.pm, 1.21, 1.22   Dave Messina
• [Bioperl-guts-l] [Bug 2303] SearchIO HSP object documentation talks about gaps meaning gap characters   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tools GFF.pm,1.64,1.65   Malcom Cook
• [Bioperl-guts-l] bioperl-live/Bio PrimarySeq.pm,1.100,1.101   Malcom Cook
• [Bioperl-guts-l] bioperl-live/Bio/Location Split.pm,1.52,1.53   Malcom Cook
• [Bioperl-guts-l] [Bug 2304] New: Two more methods in Bio/SimpleAlign.pm   bugzilla-daemon at portal.open-bio.org

Last message date: Thu May 31 20:48:04 EDT 2007
Archived on: Thu May 31 20:48:07 EDT 2007

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