March 2007 Archives by thread

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Starting: Thu Mar 1 02:49:54 EST 2007
Ending: Fri Mar 30 17:17:45 EDT 2007
Messages: 268

• [Bioperl-guts-l] bioperl-live/Bio/Tools CodonTable.pm,1.39,1.40   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Njtree Best.pm, 1.4, 1.5   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO chadoxml.pm,1.31,1.32   Scott Cain
• [Bioperl-guts-l] [Bug 2220] New: SeqIO::phd update   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2220] SeqIO::phd update   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO phd.pm,1.24,1.25   Jason Stajich
• [Bioperl-guts-l] [Bug 2221] New: TreeIO::nexus.pm parsing error   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2221] TreeIO::nexus.pm parsing error   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2221] TreeIO::nexus.pm parsing error   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2221] TreeIO::nexus.pm parsing error   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2221] TreeIO::nexus.pm parsing error   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2221] TreeIO::nexus.pm parsing error   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2221] TreeIO::nexus.pm parsing error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2222] New: can't install Bio-Tools-HMM   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2222] can't install Bio-Tools-HMM   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2222] can't install Bio-Tools-HMM   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2222] can't install Bio-Tools-HMM   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t/data M12730.gb,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t splicedseq.t,1.6,1.7   Christopher John Fields
• [Bioperl-guts-l] [Bug 2149] Bio::Species/Bio::Tree slow, memory leak   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Search SearchUtils.pm,1.22,1.23   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.111,1.112   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data frac_problems2.blast, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2193] "Undefined sub-sequence" exception parsing NCBI blastp report   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2224] New: Bio::SeqIO::swiss : Weak references are not implemented   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2224] Bio::SeqIO::swiss : Weak references are not implemented   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2224] Bio::SeqIO::swiss : Weak references are not implemented   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2224] Bio::SeqIO::swiss : Weak references are not implemented   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2224] Bio::SeqIO::swiss : Weak references are not implemented   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2224] Bio::SeqIO::swiss : Weak references are not implemented   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2224] Bio::SeqIO::swiss : Weak references are not implemented   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] rpsblast results unsupported by Bio::SearchIO::Writer   Emeric Sevin
• [Bioperl-guts-l] bioperl-live/t/data commas.nex,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t TreeIO.t,1.34,1.35   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO nexus.pm,1.15,1.16   Christopher John Fields
• [Bioperl-guts-l] [Bug 2205] SignalP parsing   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t/data spaces.nex,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO nexus.pm,1.16,1.17   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t TreeIO.t,1.35,1.36   Christopher John Fields
• [Bioperl-guts-l] [Bug 2211] TreeIO::nexus parsing problem for taxa with spaces   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t TreeIO.t,1.36,1.37   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO nexus.pm,1.17,1.18   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit GenericHit.pm, 1.41, 1.42   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search SearchUtils.pm,1.23,1.24   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data frac_problems3.blast, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.112,1.113   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2193] "Undefined sub-sequence" exception parsing NCBI blastp report   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t/data spaces.nex,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t TreeIO.t,1.37,1.38   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data commas.nex,1.1,NONE   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO nexus.pm,1.18,1.19   Christopher John Fields
• [Bioperl-guts-l] bioperl-live Build.PL,1.20,1.21   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2173] Bio::Graphics::Glyph::stackedplot always generates homogenous histogram   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2191] Bio::Tree::Node is missing delete_edge function   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2153] Bundle::BioPerl doesn't install all dependencies on the first pass   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2153] Bundle::BioPerl doesn't install all dependencies on the first pass   Dave Messina
    • [Bioperl-guts-l] [Bug 2153] Bundle::BioPerl doesn't install all dependencies on the first pass   Sendu Bala
• [Bioperl-guts-l] [Bug 2202] EMBOSSApplication.pm error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2213] crashes on downloading NCBI records   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t DB.t,1.74,1.75   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Query WebQuery.pm,1.16,1.17   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2133] -ids does not overrule term   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1572] no docs and possible typo in Bio::Location::Simple/Atomic::trunc   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2219] Bio::Tree - Trees generated from subtrees contain extraneous branchlength information   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2173] Bio::Graphics::Glyph::stackedplot always generates homogenous histogram   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2173] Bio::Graphics::Glyph::stackedplot always generates homogenous histogram   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2018] Bio::ClusterIO::dbsnp breaks with new XML output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2018] Bio::ClusterIO::dbsnp breaks with new XML output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2018] Bio::ClusterIO::dbsnp breaks with new XML output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2018] Bio::ClusterIO::dbsnp breaks with new XML output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t ClusterIO.t,1.5,1.6   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t BiblioReferences.t, 1.9, 1.10 Biblio_biofetch.t, 1.13, 1.14 Biblio_eutils.t, 1.2, 1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Biblio.t, 1.10, 1.11 BioGraphics.t, 1.19, 1.20 BlastIndex.t, 1.6, 1.7 Chain.t, 1.7, 1.8   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Coalescent.t, 1.5, 1.6 CodonTable.t, 1.20, 1.21 Compatible.t, 1.4, 1.5 chaosxml.t, 1.5, 1.6 cigarstring.t, 1.3, 1.4 consed.t, 1.5, 1.6   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t alignUtilities.t,1.4,1.5   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Assembly Contig.pm,1.15,1.16   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/PAML Result.pm, 1.25, 1.26   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/t CoordinateGraph.t, 1.1, 1.2 CoordinateMapper.t, 1.13, 1.14 Correlate.t, 1.1, 1.2 CytoMap.t, 1.5, 1.6 ctf.t, 1.3, 1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Alignment Consed.pm, 1.47, 1.48   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/Align AlignI.pm,1.18,1.19   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/Phenotype Phenotype.pm, 1.14, 1.15   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/Phenotype PhenotypeI.pm, 1.13, 1.14   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result GenericResult.pm, 1.27, 1.28   Nathan Haigh
• [Bioperl-guts-l] [Bug 2018] Bio::ClusterIO::dbsnp breaks with new XML output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2018] Bio::ClusterIO::dbsnp breaks with new XML output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2018] Bio::ClusterIO::dbsnp breaks with new XML output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t DBFasta.t, 1.8, 1.9 Domcut.t, 1.13, 1.14 dblink.t, 1.1, 1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/PAML ModelResult.pm, 1.12, 1.13   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM ProtMatrix.pm, 1.17, 1.18   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature Store.pm, 1.27, 1.28   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/Map Clone.pm,1.8,1.9   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO rnamotif.pm,1.2,1.3   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/Restriction Enzyme.pm,1.18,1.19   Nathan Haigh
• [Bioperl-guts-l] [Bug 2018] Bio::ClusterIO::dbsnp breaks with new XML output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Location Atomic.pm,1.18,1.19   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/Cluster SequenceFamily.pm, 1.13, 1.14   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/t SimpleAlign.t,1.50,1.51   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.129,1.130   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio PrimarySeqI.pm,1.69,1.70   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF RelSegment.pm,1.53,1.54   Nathan Haigh
• [Bioperl-guts-l] bioperl-live/Bio/ClusterIO dbsnp.pm,1.17,1.18   Christopher John Fields
• [Bioperl-guts-l] [Bug 2226] New: wrong retrieval order from seqfeature table   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2018] Bio::ClusterIO::dbsnp breaks with new XML output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF genbank2gff3.PLS, 1.9, 1.10   Brian Osborne
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF genbank2gff.PLS, NONE, 1.1 bp_genbank2gff.PLS, 1.14, NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF README, 1.3, 1.4 TAG, 1.1, NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live DEPRECATED,1.16,1.17   Brian Osborne
• [Bioperl-guts-l] [Bug 2018] Bio::ClusterIO::dbsnp breaks with new XML output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run PiseJob.pm,1.17,1.18   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Simprot.pm,1.3,1.4   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Eponine.pm,1.16,1.17   Nathan Haigh
• [Bioperl-guts-l] [Bug 2232] New: Bio::Tools::Run wrappers for Genemark.hmm and Glimmer/GlimmerM/GlimmerHMM   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2232] Bio::Tools::Run wrappers for Genemark.hmm and Glimmer/GlimmerM/GlimmerHMM   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2232] Bio::Tools::Run wrappers for Genemark.hmm and Glimmer/GlimmerM/GlimmerHMM   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2232] Bio::Tools::Run wrappers for Genemark.hmm and Glimmer/GlimmerM/GlimmerHMM   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2232] Bio::Tools::Run wrappers for Genemark.hmm and Glimmer/GlimmerM/GlimmerHMM   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2232] Bio::Tools::Run wrappers for Genemark.hmm and Glimmer/GlimmerM/GlimmerHMM   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2232] Bio::Tools::Run wrappers for Genemark.hmm and Glimmer/GlimmerM/GlimmerHMM   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2233] New: Request to include Bio::Tools::TandemRepeatsFinder   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2233] Request to include Bio::Tools::TandemRepeatsFinder   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2233] Request to include Bio::Tools::TandemRepeatsFinder   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2233] Request to include Bio::Tools::TandemRepeatsFinder   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2233] Request to include Bio::Tools::TandemRepeatsFinder   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2233] Request to include Bio::Tools::TandemRepeatsFinder   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Genemark.pm, NONE, 1.1 Glimmer.pm, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/t/data H_pylori_J99.fasta, NONE, 1.1 H_pylori_J99.glimmer2.icm, NONE, 1.1 H_pylori_J99.glimmer3.icm, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/t Genemark.hmm.prokaryotic.t, NONE, 1.1 Glimmer2.t, NONE, 1.1 Glimmer3.t, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-run Build.PL,1.3,1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools TandemRepeatsFinder.pm, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data tandem_repeats_finder.dat, NONE, 1.1 tandem_repeats_finder.noresults, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t TandemRepeatsFinder.t,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO nexus.pm,1.19,1.20   Christopher John Fields
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2219] Bio::Tree - Trees generated from subtrees contain extraneous branchlength information   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run/t Glimmer2.t, 1.1, 1.2 Glimmer3.t, 1.1, 1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Genemark.pm,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run RemoteBlast.pm, 1.42, 1.43   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t RemoteBlast.t,1.17,1.18   Christopher John Fields
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t Signalp2.t, NONE, 1.1 Signalp.t, 1.1, 1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data exsignalp.out,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Signalp - New directory   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Signalp ExtendedSignalp.pm, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] [Bug 2236] New: TargetP parser module   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2236] TargetP parser module   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2236] TargetP parser module   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2236] TargetP parser module   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2236] TargetP parser module   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2236] TargetP parser module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t Genpred.t,1.18,1.19   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t ECnumber.t, 1.2, 1.3 ELM.t, 1.5, 1.6 EMBL_DB.t, 1.16, 1.17 EMBOSS_Tools.t, 1.2, 1.3 EncodedSeq.t, 1.4, 1.5 Exonerate.t, 1.5, 1.6 ePCR.t, 1.2, 1.3 est2genome.t, 1.3, 1.4 exp.t, 1.3, 1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t FeatureIO.t, 1.7, 1.8 FootPrinter.t, 1.4, 1.5 fasta.t, 1.1, 1.2 flat.t, 1.11, 1.12   Christopher John Fields
• [Bioperl-guts-l] [Bug 2237] New: Bio::Index::Fasta truncates ID in Windows (with patch)   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2237] Bio::Index::Fasta truncates ID in Windows (with patch)   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2237] Bio::Index::Fasta truncates ID in Windows (with patch)   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2237] Bio::Index::Fasta truncates ID in Windows (with patch)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2238] New: Half of tests for t/Index.t do not run   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2239] New: CVS tarballs useless   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2239] CVS tarballs useless   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Njtree Best.pm, 1.5, 1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO/Handler - New directory   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio HandlerBaseI.pm,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embldriver.pm, NONE, 1.1 gbdriver.pm, NONE, 1.1 swissdriver.pm, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO/Handler GenericRichSeqHandler.pm, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Handler.t,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Annotation Comment.pm,1.14,1.15   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.86, 1.87   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature Store.pm, 1.28, 1.29   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.87, 1.88   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF genbank2gff3.PLS, 1.10, 1.11   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Signalp ExtendedSignalp.pm, 1.1, 1.2   Jason Stajich
• [Bioperl-guts-l] [Bug 2240] New: Bio::Tools::Genemark does not provide a way to set the seq_id for gene/exon features   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2240] Bio::Tools::Genemark does not provide a way to set the seq_id for gene/exon features   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2240] Bio::Tools::Genemark does not provide a way to set the seq_id for gene/exon features   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2241] New: Bio::Tools::Run::Genemark should pass -seqname arg to Bio::Tools::Genemark constructor   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2241] Bio::Tools::Run::Genemark should pass -seqname arg to Bio::Tools::Genemark constructor   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2241] Bio::Tools::Run::Genemark should pass -seqname arg to Bio::Tools::Genemark constructor   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tools Genemark.pm,1.18,1.19   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/t Genemark.hmm.prokaryotic.t,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Genemark.pm,1.2,1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools TargetP.pm,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data targetp.out,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t targetp.t,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] [Bug 2018] Bio::ClusterIO::dbsnp breaks with new XML output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2018] Bio::ClusterIO::dbsnp breaks with new XML output   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO stockholm.pm,1.28,1.29   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Infernal.pm,1.2,1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB GFF.pm,1.145,1.146   Brian Osborne
• [Bioperl-guts-l] [Bug 2242] New: Bio::Tools::Genemark does not correctly handle inexact coordinates / gene fragments   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2242] Bio::Tools::Genemark does not correctly handle inexact coordinates / gene fragments   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2242] Bio::Tools::Genemark does not correctly handle inexact coordinates / gene fragments   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2242] Bio::Tools::Genemark does not correctly handle inexact coordinates / gene fragments   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2242] Bio::Tools::Genemark does not correctly handle inexact coordinates / gene fragments   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2242] Bio::Tools::Genemark does not correctly handle inexact coordinates / gene fragments   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2242] Bio::Tools::Genemark does not correctly handle inexact coordinates / gene fragments   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tools Signalp.pm,1.12,1.13   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Signalp.t,1.2,1.3   Christopher John Fields
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2243] New: error when attempting to create new Bio::Assembly::IO object   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2243] error when attempting to create new Bio::Assembly::IO object   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t/data genemark-fragment.out, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools Genemark.pm,1.19,1.20   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Genpred.t,1.19,1.20   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/Flat/BDB swissprot.pm, 1.8, NONE   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data alleles.fas,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Genpred.t,1.20,1.21   Christopher John Fields
• [Bioperl-guts-l] [Bug 2245] New: Bio::Index::Abstract improvement   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2245] Bio::Index::Abstract improvement   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2245] Bio::Index::Abstract improvement   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2245] Bio::Index::Abstract improvement   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2246] New: data on description line gets into raw score   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2246] data on description line gets into raw score   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2246] data on description line gets into raw score   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2246] data on description line gets into raw score   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2247] New: Have Bio::SearchIO::blast methods available for other BLAST parsers   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Index Abstract.pm,1.55,1.56   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.113,1.114   Christopher John Fields
• [Bioperl-guts-l] [Bug 2219] Bio::Tree - Trees generated from subtrees contain extraneous branchlength information   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gff.pm,1.49,1.50   Scott Cain
• [Bioperl-guts-l] [Bug 2219] Bio::Tree - Trees generated from subtrees contain extraneous branchlength information   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO erpin.pm, 1.2, 1.3 infernal.pm, 1.2, 1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO rnamotif.pm,1.3,1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit ModelHit.pm,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP ModelHSP.pm,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t RNA_SearchIO.t,1.3,1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO erpin.pm, 1.3, 1.4 infernal.pm, 1.3, 1.4 rnamotif.pm, 1.4, 1.5   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio HandlerBaseI.pm,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools TargetP.pm,1.1,1.2   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/examples/searchio custom_writer.pl, 1.3, 1.4   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Signalp ExtendedSignalp.pm, 1.2, 1.3   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live bioperl.lisp,1.30,1.31   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO gbdriver.pm,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF load_gff.PLS, 1.14, 1.15   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Annotation Comment.pm,1.15,1.16   Scott Cain
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gff.pm,1.50,1.51   Scott Cain
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF genbank2gff3.PLS, 1.11, 1.12   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Annotation.t,1.21,1.22   Christopher John Fields
• [Bioperl-guts-l] [Bug 2252] New: Implement Bio::Tools::Run::tRNAscanSE   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2252] Implement Bio::Tools::Run::tRNAscanSE   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2252] Implement Bio::Tools::Run::tRNAscanSE   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature/Tools TypeMapper.pm, 1.15, 1.16 Unflattener.pm, 1.39, 1.40   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy entrez.pm,1.22,1.23   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t TandemRepeatsFinder.t, 1.1, 1.2 RangeI.t, 1.7, 1.8   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools Genemark.pm,1.20,1.21   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO swiss.pm,1.104,1.105   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO swiss.pm,1.105,1.106   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.110,1.111   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB Taxonomy.pm,1.16,1.17   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2254] New: strange behaviour when parsing blast output: last result comes first   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2254] strange behaviour when parsing blast output: last result comes first   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2254] strange behaviour when parsing blast output: last result comes first   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2254] strange behaviour when parsing blast output: last result comes first   bugzilla-daemon at portal.open-bio.org
  • [Bioperl-guts-l] [Bug 2254] strange behaviour when parsing blast output: last result comes first   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run ERPIN.pm, 1.1, 1.2 Genemark.pm, 1.3, 1.4 Infernal.pm, 1.3, 1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.130,1.131   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/SeqEvolution - New directory   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/SeqEvolution DNAPoint.pm, NONE, 1.1 EvolutionI.pm, NONE, 1.1 Factory.pm, NONE, 1.1   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t SeqEvolution.t,NONE,1.1   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live Build.PL,1.21,1.22   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO infernal.pm,1.4,1.5   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run RNAMotif.pm,1.4,1.5   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t RemoteBlast.t,1.18,1.19   Dave Messina

Last message date: Fri Mar 30 17:17:45 EDT 2007
Archived on: Fri Mar 30 17:17:47 EDT 2007

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