July 2007 Archives by subject

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Starting: Sun Jul 1 17:32:30 EDT 2007
Ending: Tue Jul 31 11:32:45 EDT 2007
Messages: 233

• [Bioperl-guts-l] [bioperl 14140] bioperl-live/trunk/FOO:   George Hartzell
• [Bioperl-guts-l] [bioperl 14141] bioperl-live/trunk/t/FOO:   George Hartzell
• [Bioperl-guts-l] [bioperl 14142] bioperl-live/trunk/t/FOO:   George Hartzell
• [Bioperl-guts-l] [bioperl 14143] bioperl-live/trunk/doc/Deobfuscator/FOO:   George Hartzell
• [Bioperl-guts-l] [bioperl 14144] bioperl-live/trunk/doc/Deobfuscator/FOO:   George Hartzell
• [Bioperl-guts-l] [bioperl svn][14135]   George Hartzell
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2178] Bio::Enzyme's cutter() is wrong for V, H, D, B amibuities   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2179] bug in Bio::Restriction::IO::withrefm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2202] EMBOSSApplication.pm error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2202] EMBOSSApplication.pm error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2202] EMBOSSApplication.pm error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2203] Signalp extension or new module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2238] Half of tests for t/Index.t do not run   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2238] Half of tests for t/Index.t do not run   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2238] Half of tests for t/Index.t do not run   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2238] Half of tests for t/Index.t do not run   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2243] error when attempting to create new Bio::Assembly::IO object   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2243] error when attempting to create new Bio::Assembly::IO object   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2254] strange behaviour when parsing blast output: last result comes first   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2262] Bio::Seq object loses sequence data when blessed as Bio::Seq::Meta::Array   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2279] WebDBSeqI.pm doesn't run under mod_perl2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2279] WebDBSeqI.pm doesn't run under mod_perl2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2282] GFF negative ##sequence-region values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2283] genbank.pm: improper handling of ORGANISM & KEYWORDS fileds   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2283] genbank.pm: improper handling of ORGANISM & KEYWORDS fileds   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2283] genbank.pm: improper handling of ORGANISM & KEYWORDS fileds   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2283] genbank.pm: improper handling of ORGANISM & KEYWORDS fileds   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2286] spliced_seq throws exception on Bio::DB::GFF::Feature object   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2286] spliced_seq throws exception on Bio::DB::GFF::Feature object   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2288] Bio::SeqIO::swiss throws when classification includes internal period   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2295] Using Bio::SeqIO causes a warning message   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2299] Bio::Tools::Glimmer needs workaround to deal with Glimmer 2.X/3.X producing plus strand predictions with start > end   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2299] Bio::Tools::Glimmer needs workaround to deal with Glimmer 2.X/3.X producing plus strand predictions with start > end   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2299] Bio::Tools::Glimmer needs workaround to deal with Glimmer 2.X/3.X producing plus strand predictions with start > end   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2299] Bio::Tools::Glimmer needs workaround to deal with Glimmer 2.X/3.X producing plus strand predictions with start > end   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2299] Bio::Tools::Glimmer needs workaround to deal with Glimmer 2.X/3.X producing plus strand predictions with start > end   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2299] Bio::Tools::Glimmer needs workaround to deal with Glimmer 2.X/3.X producing plus strand predictions with start > end   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2299] Bio::Tools::Glimmer needs workaround to deal with Glimmer 2.X/3.X producing plus strand predictions with start > end   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2299] Bio::Tools::Glimmer needs workaround to deal with Glimmer 2.X/3.X producing plus strand predictions with start > end   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2299] Bio::Tools::Glimmer needs workaround to deal with Glimmer 2.X/3.X producing plus strand predictions with start > end   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2302] GFF3 attribute values unescaped prematurely in Bio::DB::SeqFeature::Store::GFF3Loader   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2305] Use of uninitialized value in pattern match (m//) at /usr/lib/perl5/site_perl/5.8.8/Bio/SeqIO/genbank.pm line 352, <STDIN> line 4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2305] Use of uninitialized value in pattern match (m//) at /usr/lib/perl5/site_perl/5.8.8/Bio/SeqIO/genbank.pm line 352, <STDIN> line 4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2305] Use of uninitialized value in pattern match (m//) at /usr/lib/perl5/site_perl/5.8.8/Bio/SeqIO/genbank.pm line 352, <STDIN> line 4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2305] Use of uninitialized value in pattern match (m//) at /usr/lib/perl5/site_perl/5.8.8/Bio/SeqIO/genbank.pm line 352, <STDIN> line 4   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2310] nonstandard method docs in Bio::Search::Result::BlastResult   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2310] nonstandard method docs in Bio::Search::Result::BlastResult   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2313] './Build test' stalls from current cvs bioperl-run   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2313] './Build test' stalls from current cvs bioperl-run   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2314] Bio:Graphics should handle more gracefully broken GenBank/EMBL formatted files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2317] Changing parameter MATRIX_NAME in RemoteBlast generates an error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2320] problem with high_quality_discrepancies in ContigAnalysis: Can't call method "start" on an undefined value at /home/jayoung/traskdata/perl/lib/Bio/Assembly/ContigAnalysis.pm line 177.   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2320] problem with high_quality_discrepancies in ContigAnalysis: Can't call method "start" on an undefined value at /home/jayoung/traskdata/perl/lib/Bio/Assembly/ContigAnalysis.pm line 177.   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2320] problem with high_quality_discrepancies in ContigAnalysis: Can't call method "start" on an undefined value at /home/jayoung/traskdata/perl/lib/Bio/Assembly/ContigAnalysis.pm line 177.   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2320] problem with high_quality_discrepancies in ContigAnalysis: Can't call method "start" on an undefined value at /home/jayoung/traskdata/perl/lib/Bio/Assembly/ContigAnalysis.pm line 177.   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2320] problem with high_quality_discrepancies in ContigAnalysis: Can't call method "start" on an undefined value at /home/jayoung/traskdata/perl/lib/Bio/Assembly/ContigAnalysis.pm line 177.   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2321] AlignIO::next_aln does not return multiple alignments for bl2seq   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2321] AlignIO::next_aln does not return multiple alignments for bl2seq   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2325] Bio::SimpleAlign->remove_columns() fails with all_gaps_columns   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2329] New: Enhancement to Bio::SeqIO::abi - abi_with_trace   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2331] Bio::Tools::Genewise transcript alignment score incorrect   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2331] Bio::Tools::Genewise transcript alignment score incorrect   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2331] New: Bio::Tools::Genewise transcript alignment score incorrect   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] New: Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2332] Software for analysis of redundant fragments of affys human mitochip v2   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2333] New: Add iterations to blastxml   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2334] Bio::Tools::Phylo::Phylip::ProtDist next_matrix method   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2334] Bio::Tools::Phylo::Phylip::ProtDist next_matrix method   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2334] New: Bio::Tools::Phylo::Phylip::ProtDist next_matrix method   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2335] Bio::SeqIO::fastq error in parsing next sequence entry   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2335] Bio::SeqIO::fastq error in parsing next sequence entry   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2335] Bio::SeqIO::fastq error in parsing next sequence entry   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2335] Bio::SeqIO::fastq error in parsing next sequence entry   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2335] Bio::SeqIO::fastq error in parsing next sequence entry   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2335] Bio::SeqIO::fastq error in parsing next sequence entry   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2335] Bio::SeqIO::fastq error in parsing next sequence entry   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2335] Bio::SeqIO::fastq error in parsing next sequence entry   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2335] Bio::SeqIO::fastq error in parsing next sequence entry   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2335] Bio::SeqIO::fastq error in parsing next sequence entry   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2335] New: Bio::SeqIO::fastq error in parsing next sequence entry   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2336] bp_bioflat_index.pl and Bio::DB::Flat::BDB::fasta creates incorrect index   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2336] bp_bioflat_index.pl and Bio::DB::Flat::BDB::fasta creates incorrect index   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2336] bp_bioflat_index.pl and Bio::DB::Flat::BDB::fasta creates incorrect index   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2336] bp_bioflat_index.pl and Bio::DB::Flat::BDB::fasta creates incorrect index   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2336] bp_bioflat_index.pl and Bio::DB::Flat::BDB::fasta creates incorrect index   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2336] bp_bioflat_index.pl and Bio::DB::Flat::BDB::fasta creates incorrect index   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2336] New: bp_bioflat_index.pl and Bio::DB::Flat::BDB::fasta creates incorrect index   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2337] New: BDB flatfile index should store global configuration data in BDB   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2338] New: The first 4 bytes of flatfile index is wrong (--indextype flat)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2338] The first 4 bytes of flatfile index is wrong (--indextype flat)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2338] The first 4 bytes of flatfile index is wrong (--indextype flat)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2338] The first 4 bytes of flatfile index is wrong (--indextype flat)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2338] The first 4 bytes of flatfile index is wrong (--indextype flat)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2339] In a flat file index, the size of the final entry of a fasta file is wrong   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2339] In a flat file index, the size of the final entry of a fasta file is wrong   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2339] In a flat file index, the size of the final entry of a fasta file is wrong   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2339] New: In a flat file index, the size of the final entry of a fasta file is wrong   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio ParameterBaseI.pm,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio PrimarySeq.pm,1.101,1.102   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio PullParserI.pm,1.13,1.14   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio SeqFeatureI.pm,1.71,1.72   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio SeqIO.pm,1.97,1.98   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.136,1.137   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO bl2seq.pm,1.28,1.29   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO fasta.pm,1.30,1.31   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Assembly ContigAnalysis.pm, 1.8, 1.9   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Assembly ContigAnalysis.pm, 1.9, 1.10   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Assembly IO.pm,1.8,1.9   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Assembly Singlet.pm,1.12,1.13   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Assembly/IO ace.pm,1.17,1.18   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB EUtilities.pm,1.40,1.41   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB EUtilParameters.pm, 1.3, 1.4 EUtilities.pm, 1.41, 1.42 GenericWebAgent.pm, 1.1, 1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB EUtilParameters.pm, 1.4, 1.5 EUtilities.pm, 1.42, 1.43   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB EUtilParameters.pm,1.5,1.6   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB GenericWebAgent.pm, NONE, 1.1 EUtilities.pm, 1.39, 1.40   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB GenericWebDBI.pm,1.10,NONE   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB GFF.pm,1.151,1.152   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.27, 1.28   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.25, 1.26   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.26, 1.27   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Factory SeqAnalysisParserFactory.pm, 1.16, 1.17   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Factory SequenceProcessorI.pm, 1.6, 1.7   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO bed.pm,1.10,1.11   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graphics DrawTransmembrane.pm, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph dna.pm,1.30,1.31   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/MolEvol - New directory   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/MolEvol CodonModel.pm,NONE,1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/PopGen Genotype.pm,1.12,1.13   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/PopGen Population.pm,1.21,1.22   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/PopGen Population.pm,1.22,1.23   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/PopGen Statistics.pm, 1.37, 1.38 Utilities.pm, 1.10, 1.11   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/PopGen Statistics.pm,1.38,1.39   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Restriction Enzyme.pm,1.21,1.22   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Root IO.pm,1.65,1.66   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Root Root.pm,1.42,1.43   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Root RootI.pm,1.78,1.79   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result BlastResult.pm, 1.27, 1.28 GenericResult.pm, 1.29, 1.30   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO IteratedSearchResultEventBuilder.pm, 1.14, 1.15 blast.pm, 1.116, 1.117   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.115,1.116   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.117,1.118   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.118,1.119   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO fasta.pm,1.55,1.56   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO fasta.pm,1.56,1.57   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO fasta.pm,1.57,1.58   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/Writer GbrowseGFF.pm, 1.17, 1.18   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Seq Meta.pm,1.15,1.16   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Seq/Meta Array.pm,1.14,1.15   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Collection.pm, 1.21, 1.22   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO fastq.pm,1.18,1.19   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO interpro.pm,1.14,1.15   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO swiss.pm,1.107,1.108   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools EUtilities.pm,1.4,1.5   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools EUtilities.pm,1.5,1.6   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools EUtilities.pm,1.6,1.7   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools Genewise.pm,1.28,1.29   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools GFF.pm,1.66,1.67   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools Glimmer.pm,1.9,1.10   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/EUtilities Cookie.pm, 1.1, 1.2 HistoryI.pm, 1.4, 1.5 Link.pm, 1.4, 1.5 Query.pm, 1.3, 1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/EUtilities Cookie.pm, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/EUtilities History.pm, 1.3, 1.4 HistoryI.pm, 1.2, 1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/EUtilities HistoryI.pm, 1.3, 1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/EUtilities/Link UrlLink.pm, 1.2, 1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/EUtilities/Summary DocSum.pm, 1.2, 1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/Phylip ProtDist.pm, 1.12, 1.13   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run RemoteBlast.pm, 1.44, 1.45   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run StandAloneNCBIBlast.pm, 1.1, 1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run WrapperBase.pm, 1.36, 1.37   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t AAChange.t,1.9,1.10   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t Genpred.t,1.25,1.26   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Handler.t,1.3,1.4 swiss.t,1.8,1.9   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t MK.t,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t MK.t,1.2,1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t MK.t,NONE,1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t PopGen.t,1.30,1.31   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t qual.t,1.11,1.12   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Root-Utilities.t,1.6,1.7   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t SearchDist.t,1.16,1.17   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.116,1.117   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.117,1.118   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.118,1.119   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t seq_quality.t,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t seq_quality.t,1.4,1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data bug1986.blast2,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data bug1986.blastp,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data bug2335.fastq,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data CG11099.fasaln, NONE, 1.1 CG2865.fasaln, NONE, 1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t/data glimmer3-fragment.detail, NONE, 1.1 glimmer3-fragment.predict, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data Q8GBD3.swiss,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/lib BioperlTest.pm,1.11,1.12   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib BioperlTest.pm,1.12,1.13   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Array - New directory   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Array Compare.pm,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Sub - New directory   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Sub Uplevel.pm,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Test Exception.pm, NONE, 1.1 Harness.pm, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Test Warn.pm,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Test/Harness - New directory   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Test/Harness Assert.pm, NONE, 1.1 Iterator.pm, NONE, 1.1 Point.pm, NONE, 1.1 Results.pm, NONE, 1.1 Straps.pm, NONE, 1.1 TAP.pod, NONE, 1.1 Util.pm, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Test/Warn - New directory   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Test/Warn Bioperl.pm,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Test/Warn Bioperl.pm,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Tree - New directory   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Tree DAG_Node.pm,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Factory EMBOSS.pm,1.10,1.11   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Glimmer.pm,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Glimmer.pm,1.2,1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Hmmer.pm,1.10,1.11   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Hmmer.pm,1.9,1.10   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t Glimmer2.t, 1.3, 1.4 Glimmer3.t, 1.3, 1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/t Hmmer.t,1.4,1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t/lib BioperlTest.pm,NONE,1.1   Senduran Balasubramaniam

Last message date: Tue Jul 31 11:32:45 EDT 2007
Archived on: Tue Jul 31 11:32:50 EDT 2007

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