[Bioperl-guts-l] [Bug 2197] Bio::Species throws if species name is synonym of lineage

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon Jan 29 14:06:18 EST 2007


http://bugzilla.open-bio.org/show_bug.cgi?id=2197





------- Comment #4 from cjfields at uiuc.edu  2007-01-29 14:06 -------
I'll look at it as well (at least confirm it).  The examples shown primarily
seem to be subspecies names, which are probably tagged in taxonomy not to be
shown in the classification array due to their length.

In the meantime, I'll modify the warn() to denote that the classification array
for the record is incomplete and cannot be used for any rational taxonomic work
w/o performing an entrez or local taxonomy db lookup using the taxid.


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