October 2006 Archives by subject

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Starting: Sun Oct 1 01:45:06 EDT 2006
Ending: Tue Oct 31 17:26:33 EST 2006
Messages: 595

• [Bioperl-guts-l] [Bioperl-l] Updated Makefile.PL   Erikjan
• [Bioperl-guts-l] [Bug 1392] Make install of cvs main trunk of bioperl-ext doesn't install read.so   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1707] Out of memory crash from Bio::DB::GFF::Adaptor::dbi::pg.pm (Postgres)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1877] Bio::PopGen::IO::hapmap.pm write_population method   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2060] load_ucsc.pl fails on UCSC's hg17 "refFlat.txt.gz" file   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2060] load_ucsc.pl fails on UCSC's hg17 "refFlat.txt.gz" file   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2060] load_ucsc.pl fails on UCSC's hg17 "refFlat.txt.gz" file   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2060] load_ucsc.pl fails on UCSC's hg17 "refFlat.txt.gz" file   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2069] Bio::Tools:pSW stop codon bug   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2069] Bio::Tools:pSW stop codon bug   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2101] Bio::Location mishandling of join(complement(..), complement(..))   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2101] Bio::Location mishandling of join(complement(..), complement(..))   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2101] Bio::Location mishandling of join(complement(..), complement(..))   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2101] Bio::Location mishandling of join(complement(..), complement(..))   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2101] Bio::Location mishandling of join(complement(..), complement(..))   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2104] Bio::DB::WebDBSeqI does not work under mod_perl   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2113] XEMBL-related URLs in Bio::DB::XEMBL and Bio::DB::XEMBLServices no longer work   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2113] XEMBL-related URLs in Bio::DB::XEMBL and Bio::DB::XEMBLServices no longer work   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2113] XEMBL-related URLs in Bio::DB::XEMBL and Bio::DB::XEMBLServices no longer work   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2113] XEMBL-related URLs in Bio::DB::XEMBL and Bio::DB::XEMBLServices no longer work   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2115] entregene tests - pseudo-hash warnings for line 467   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2115] entregene tests - pseudo-hash warnings for line 467   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2115] New: entregene tests - pseudo-hash warnings for line 467   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2116] New: t/RootIO.t tests - filehandle warning Bio/Root/IO.pm line 469   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2116] t/RootIO.t tests - filehandle warning Bio/Root/IO.pm line 469   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2117] Analysis_soap test fails   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2117] Analysis_soap test fails   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2117] Analysis_soap test fails   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2117] Analysis_soap test fails   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2117] Analysis_soap test fails   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2117] Analysis_soap test fails   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2117] Analysis_soap test fails   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2117] New: Analysis_soap test fails   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2118] Bio/DB/SeqFeature/Segment.pm mixing symbolic and numeric strand()   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2118] New: Bio/DB/SeqFeature/Segment.pm mixing symbolic and numeric strand()   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2119] Incomplete tempfile removal using RemoteBlast   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2119] Incomplete tempfile removal using RemoteBlast   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2119] Incomplete tempfile removal using RemoteBlast   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2119] Incomplete tempfile removal using RemoteBlast   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2119] New: Incomplete tempfile removal using RemoteBlast   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2120] Bio::SeqIO (-format => phd) does not read trace indices   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2120] Bio::SeqIO (-format => phd) does not read trace indices   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2120] Bio::SeqIO (-format => phd) does not read trace indices   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2120] Bio::SeqIO (-format => phd) does not read trace indices   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2120] New: Bio::SeqIO (-format => phd) does not read trace indices   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2121] BLAST parsing routine does not correctly handle reports w/o alignments   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2121] BLAST parsing routine does not correctly handle reports w/o alignments   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2121] BLAST parsing routine does not correctly handle reports w/o alignments   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2121] BLAST parsing routine does not correctly handle reports w/o alignments   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2121] BLAST parsing routine does not correctly handle reports w/o alignments   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2121] New: BLAST parsing routine does not correctly handle reports w/o alignments   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2122] AnalysisFactory_soap.t failures   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2122] New: AnalysisFactory_soap.t failures   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2123] New: Add id_parser() method to Bio::Index::Blast   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2124] annotation-dblink version-number repeat   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2124] annotation-dblink version-number repeat   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2124] annotation-dblink version-number repeat   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2124] New: annotation-dblink version-number repeat   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2125] multiple rounds of 'make test' for bioperl-db fail (Mac OS X)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2125] multiple rounds of 'make test' for bioperl-db fail (Mac OS X)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2125] multiple rounds of 'make test' for bioperl-db fail (Mac OS X)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2125] multiple rounds of 'make test' for bioperl-db fail (Mac OS X)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2125] New: multiple rounds of 'make test' for bioperl-db fail (Mac OS X)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2126] New: t/Pise.t warning   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2126] t/Pise.t warning   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2126] t/Pise.t warning   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2126] t/Pise.t warning   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2126] t/Pise.t warning   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2126] t/Pise.t warning   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2127] Add Amap, Kalign and Probcon Quiet option   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2127] New: Add Amap, Kalign and Probcon Quiet option   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2128] Bio::Restriction::EnzymeCollection cutters()   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2128] New: Bio::Restriction::EnzymeCollection cutters()   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2129] Documentation of Bio::Restriction::EnzymeCollection is incorrect   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2129] Documentation of Bio::Restriction::EnzymeCollection is incorrect   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2129] Documentation of Bio::Restriction::EnzymeCollection is incorrect   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2129] New: Documentation of Bio::Restriction::EnzymeCollection is incorrect   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2130] First feature not parsed in EMBL files missing FH lines by SeqIO/embl.pm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2130] First feature not parsed in EMBL files missing FH lines by SeqIO/embl.pm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2130] New: First feature not parsed in EMBL files missing FH lines by SeqIO/embl.pm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-db INSTALL,1.13,1.14   Christopher John Fields
• [Bioperl-guts-l] bioperl-db Makefile.PL,1.4,1.5   Nathan Haigh
• [Bioperl-guts-l] bioperl-db Makefile.PL,1.5,1.6   Nathan Haigh
• [Bioperl-guts-l] bioperl-db Makefile.PL,1.6,1.7   Nathan Haigh
• [Bioperl-guts-l] bioperl-db Makefile.PL,1.7,1.8   Nathan Haigh
• [Bioperl-guts-l] bioperl-db Makefile.PL,1.8,1.9   Nathan Haigh
• [Bioperl-guts-l] bioperl-db/Bio/DB/BioSQL OBDA.pm,1.2,1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-db/t 03simpleseq.t,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-db/t/data Titin.fasta,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-db/t/data Titin.fasta.gz,1.1,NONE   Christopher John Fields
• [Bioperl-guts-l] bioperl-live AUTHORS, 1.49.2.1, 1.49.2.2 Changes, 1.49, 1.49.4.1 DEPRECATED, 1.9, 1.9.4.1 INSTALL, 1.47.4.2, 1.47.4.3 INSTALL.WIN, 1.20, 1.20.4.1 Makefile.PL, 1.94.4.2, 1.94.4.3 README, 1.45, 1.45.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live AUTHORS,1.51,1.52   Brian Osborne
• [Bioperl-guts-l] bioperl-live Changes,1.49,1.50   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live DEPRECATED,1.11,1.12   Torsten Seemann
• [Bioperl-guts-l] bioperl-live DEPRECATED,1.12,1.13   Torsten Seemann
• [Bioperl-guts-l] bioperl-live DEPRECATED,1.13,1.14   Christopher John Fields
• [Bioperl-guts-l] bioperl-live INSTALL,1.50,1.51   Christopher John Fields
• [Bioperl-guts-l] bioperl-live INSTALL,1.51,1.52   Christopher John Fields
• [Bioperl-guts-l] bioperl-live INSTALL,1.52,1.53   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live INSTALL.WIN,1.20,1.21   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.102,1.103   Nathan Haigh
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.103,1.104   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.104,1.105   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.105,1.106   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.106,1.107   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.107,1.108   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.108,1.109   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.109,1.110   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.110,1.111   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.111,1.112   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live README,1.45,1.46   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio AlignIO.pm, 1.46.4.3, 1.46.4.4 AnalysisI.pm, 1.10, 1.10.4.1 AnalysisParserI.pm, 1.12, 1.12.4.1 AnalysisResultI.pm, 1.10, 1.10.4.1 AnnotatableI.pm, 1.12, 1.12.4.1 AnnotationCollectionI.pm, 1.17.4.3, 1.17.4.4 AnnotationI.pm, 1.10.4.3, 1.10.4.4 Biblio.pm, 1.16, 1.16.4.1 ClusterI.pm, 1.6, 1.6.4.1 ClusterIO.pm, 1.18, 1.18.4.1 DBLinkContainerI.pm, 1.12, 1.12.4.1 DasI.pm, 1.18.4.3, 1.18.4.4 DescribableI.pm, 1.10, 1.10.4.1 FeatureHolderI.pm, 1.10, 1.10.4.1 FeatureIO.pm, 1.15.4.1, 1.15.4.2 Graphics.pm, 1.17, 1.17.4.1 IdCollectionI.pm, 1.6, 1.6.4.1 IdentifiableI.pm, 1.11.4.3, 1.11.4.4 LocatableSeq.pm, 1.39.4.3, 1.39.4.4 LocationI.pm, 1.25, 1.25.4.1 MapIO.pm, 1.9, 1.9.4.1 OntologyIO.pm, 1.12, 1.12.4.1 Perl.pm, 1.26.4.3, 1.26.4.4 PrimarySeq.pm, 1.95.4.3, 1.95.4.4 PrimarySeqI.pm, 1.65.4.3, 1.65.4.4 PullParserI.pm, 1.1.2.3, 1.1.2.4 Range.pm, 1.27, 1.27.4.1 RangeI.pm, 1.49, 1.49.4.1 SearchDist.pm, 1.20.4.3, 1.20.4.4 SearchIO.pm, 1.39, 1.39.4.1 Seq.pm, 1.91, 1.91.4.1 SeqAnalysisParserI.pm, 1.16, 1.16.4.1 SeqFeatureI.pm, 1.66.4.3! , 1.66.4.4 SeqI.pm, 1.29.4.3, 1.29.4.4 SeqIO.pm, 1.92.4.3, 1.92.4.4 SeqUtils.pm, 1.34, 1.34.2.1 SimpleAlign.pm, 1.108.2.3, 1.108.2.4 SimpleAnalysisI.pm, 1.9, 1.9.4.1 Species.pm, 1.35.4.2, 1.35.4.3 Taxon.pm, 1.1.4.1, 1.1.4.2 Taxonomy.pm, 1.8, 1.8.4.1 TreeIO.pm, 1.20, 1.20.4.1 UpdateableSeqI.pm, 1.7, 1.7.4.1 WebAgent.pm, 1.12, 1.12.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio AnnotatableI.pm, 1.15, 1.16 SearchIO.pm, 1.40, 1.41 ClusterI.pm, 1.7, 1.8   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio Biblio.pm, 1.18, 1.19 WebAgent.pm, 1.14, 1.15 SimpleAnalysisI.pm, 1.10, 1.11 AnalysisI.pm, 1.12, 1.13   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio FeatureIO.pm,1.15.4.2,1.15.4.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio FeatureIO.pm,1.20,1.21   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio Seq.pm,1.92,1.93   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.113,1.114   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.114,1.115   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio Species.pm,1.42,1.43   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio Taxon.pm, 1.5, 1.6 Species.pm, 1.43, 1.44   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio Taxon.pm,1.4,1.5   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio WebAgent.pm,1.12.4.1,1.12.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio WebAgent.pm,1.15,1.16   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio WebAgent.pm,1.16,1.17   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Align AlignI.pm, 1.16, 1.16.4.1 DNAStatistics.pm, 1.32.4.1, 1.32.4.2 PairwiseStatistics.pm, 1.10, 1.10.4.1 ProteinStatistics.pm, 1.7, 1.7.4.1 StatisticsI.pm, 1.7, 1.7.4.1 Utilities.pm, 1.20.4.2, 1.20.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Align AlignI.pm,1.17,1.18   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO bl2seq.pm, 1.23.4.2, 1.23.4.3 clustalw.pm, 1.37.4.2, 1.37.4.3 emboss.pm, 1.17.4.2, 1.17.4.3 fasta.pm, 1.27, 1.27.4.1 largemultifasta.pm, 1.9.4.2, 1.9.4.3 maf.pm, 1.10, 1.10.4.1 mase.pm, 1.11.4.2, 1.11.4.3 mega.pm, 1.11.4.2, 1.11.4.3 meme.pm, 1.10.4.2, 1.10.4.3 metafasta.pm, 1.6, 1.6.4.1 msf.pm, 1.22.4.2, 1.22.4.3 nexus.pm, 1.27, 1.27.4.1 pfam.pm, 1.12.4.2, 1.12.4.3 phylip.pm, 1.36.4.2, 1.36.4.3 po.pm, 1.6.4.1, 1.6.4.2 prodom.pm, 1.10.4.2, 1.10.4.3 psi.pm, 1.11, 1.11.4.1 selex.pm, 1.14.4.2, 1.14.4.3 stockholm.pm, 1.15.4.2, 1.15.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO mega.pm,1.13,1.14   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO metafasta.pm,1.7,1.8   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Annotation AnnotationFactory.pm, 1.6, 1.6.4.1 Collection.pm, 1.23, 1.23.4.1 Comment.pm, 1.12, 1.12.6.1 DBLink.pm, 1.18, 1.18.6.1 OntologyTerm.pm, 1.15.4.2, 1.15.4.3 Reference.pm, 1.24.4.2, 1.24.4.3 SimpleValue.pm, 1.18.4.2, 1.18.4.3 StructuredValue.pm, 1.7.4.2, 1.7.4.3 Target.pm, 1.7.4.2, 1.7.4.3 TypeManager.pm, 1.6.4.2, 1.6.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Annotation DBLink.pm, 1.18.6.1, 1.18.6.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Annotation DBLink.pm,1.20,1.21   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Assembly Contig.pm, 1.11.4.2, 1.11.4.3 ContigAnalysis.pm, 1.6, 1.6.4.1 IO.pm, 1.6.4.2, 1.6.4.3 Scaffold.pm, 1.12, 1.12.4.1 ScaffoldI.pm, 1.6, 1.6.4.1 Singlet.pm, 1.9, 1.9.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Assembly/IO ace.pm, 1.13, 1.13.4.1 phrap.pm, 1.5, 1.5.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Biblio Article.pm, 1.14.4.2, 1.14.4.3 BiblioBase.pm, 1.13, 1.13.4.1 Book.pm, 1.14.4.2, 1.14.4.3 BookArticle.pm, 1.13.4.2, 1.13.4.3 IO.pm, 1.17.4.2, 1.17.4.3 Journal.pm, 1.13.4.2, 1.13.4.3 JournalArticle.pm, 1.14.4.2, 1.14.4.3 MedlineArticle.pm, 1.12, 1.12.4.1 MedlineBook.pm, 1.10.4.2, 1.10.4.3 MedlineBookArticle.pm, 1.10.4.2, 1.10.4.3 MedlineJournal.pm, 1.10, 1.10.4.1 MedlineJournalArticle.pm, 1.10.4.2, 1.10.4.3 Organisation.pm, 1.14, 1.14.4.1 Patent.pm, 1.14, 1.14.4.1 Person.pm, 1.15.4.2, 1.15.4.3 Proceeding.pm, 1.13, 1.13.4.1 Provider.pm, 1.11, 1.11.4.1 PubmedArticle.pm, 1.9.4.2, 1.9.4.3 PubmedBookArticle.pm, 1.9.4.2, 1.9.4.3 PubmedJournalArticle.pm, 1.10.4.2, 1.10.4.3 Ref.pm, 1.12.4.2, 1.12.4.3 Service.pm, 1.13, 1.13.4.1 TechReport.pm, 1.12.4.2, 1.12.4.3 Thesis.pm, 1.12, 1.12.4.1 WebResource.pm, 1.13.4.2, 1.13.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Biblio/IO medline2ref.pm, 1.15, 1.15.4.1 medlinexml.pm, 1.9, 1.9.4.1 pubmed2ref.pm, 1.6, 1.6.4.1 pubmedxml.pm, 1.8, 1.8.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Biblio/IO pubmed2ref.pm, 1.7, 1.8 medline2ref.pm, 1.16, 1.17 pubmedxml.pm, 1.9, 1.10 medlinexml.pm, 1.10, 1.11   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Cluster ClusterFactory.pm, 1.6, 1.6.4.1 FamilyI.pm, 1.6, 1.6.4.1 SequenceFamily.pm, 1.10, 1.10.4.1 UniGene.pm, 1.38, 1.38.4.1 UniGeneI.pm, 1.16, 1.16.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Cluster FamilyI.pm,1.7,1.8   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Cluster SequenceFamily.pm, 1.11, 1.12   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/ClusterIO dbsnp.pm, 1.16, 1.16.4.1 unigene.pm, 1.29, 1.29.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/CodonUsage IO.pm, 1.11, 1.11.4.1 Table.pm, 1.14, 1.14.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Coordinate Chain.pm, 1.7, 1.7.4.1 Collection.pm, 1.24, 1.24.4.1 ExtrapolatingPair.pm, 1.16, 1.16.4.1 GeneMapper.pm, 1.27, 1.27.4.1 Graph.pm, 1.10, 1.10.4.1 MapperI.pm, 1.10, 1.10.4.1 Pair.pm, 1.19, 1.19.4.1 Result.pm, 1.15, 1.15.4.1 ResultI.pm, 1.6, 1.6.4.1 Utils.pm, 1.16, 1.16.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Coordinate ResultI.pm, 1.7, 1.8 MapperI.pm, 1.11, 1.12 Result.pm, 1.16, 1.17 Pair.pm, 1.20, 1.21   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Coordinate/Result Gap.pm, 1.10, 1.11 Match.pm, 1.10, 1.11   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Coordinate/Result Gap.pm, 1.9, 1.9.4.1 Match.pm, 1.9, 1.9.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Das FeatureTypeI.pm, 1.6, 1.6.4.1 SegmentI.pm, 1.11, 1.11.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB Ace.pm, 1.15.4.1, 1.15.4.2 BiblioI.pm, 1.10, 1.10.4.1 BioFetch.pm, 1.29, 1.29.4.1 CUTG.pm, 1.11.4.1, 1.11.4.2 DBFetch.pm, 1.13.4.1, 1.13.4.2 EMBL.pm, 1.21, 1.21.4.1 EUtilities.pm, 1.24.4.1, 1.24.4.2 EntrezGene.pm, 1.8, 1.8.4.1 Expression.pm, 1.4, 1.4.4.1 Failover.pm, 1.10.4.1, 1.10.4.2 Fasta.pm, 1.44.4.2, 1.44.4.3 FileCache.pm, 1.11.4.1, 1.11.4.2 Flat.pm, 1.24, 1.24.4.1 GDB.pm, 1.20.4.1, 1.20.4.2 GFF.pm, 1.139, 1.139.4.1 GenBank.pm, 1.59, 1.59.4.1 GenPept.pm, 1.31, 1.31.4.1 GenericWebDBI.pm, 1.3, 1.3.4.1 InMemoryCache.pm, 1.7.4.1, 1.7.4.2 LocationI.pm, 1.1.2.1, 1.1.2.2 MeSH.pm, 1.8, 1.8.4.1 NCBIHelper.pm, 1.54, 1.54.2.1 QueryI.pm, 1.5, 1.5.4.1 RandomAccessI.pm, 1.14.4.1, 1.14.4.2 RefSeq.pm, 1.13, 1.13.4.1 ReferenceI.pm, 1.1.2.1, 1.1.2.2 Registry.pm, 1.32.4.1, 1.32.4.2 SeqFeature.pm, 1.7.4.1, 1.7.4.2 SeqHound.pm, 1.4, 1.4.4.1 SeqI.pm, 1.10, 1.10.4.1 SeqVersion.pm, 1.5, 1.5.4.1 SwissProt.pm, 1.30, 1.30.4.1 Taxonomy.pm, 1.11.4.1, 1.11.4.2 Universal.pm, 1.5, 1.5.4.1 UpdateableSeqI.pm, 1.8, 1.8.4.1 WebDBSeqI.pm, 1.57, 1.5! 7.2.1 XEMBL.pm, 1.10, 1.10.4.1 XEMBLService.pm, 1.8, 1.8.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB BiblioI.pm,1.11,1.12   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB BioFetch.pm,1.30,1.31   Malcom Cook
• [Bioperl-guts-l] bioperl-live/Bio/DB EntrezGene.pm, 1.9, 1.10 SeqVersion.pm, 1.8, 1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB EUtilities.pm,1.33,1.34   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB EUtilities.pm,1.34,1.35   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB Flat.pm,1.26,1.27   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB MeSH.pm,1.9,1.10   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB Registry.pm,1.39,1.40   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqFeature.pm,1.10,1.11   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqHound.pm,1.4.4.1,1.4.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqHound.pm,1.6,1.7   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqHound.pm,1.7,1.8   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqVersion.pm, 1.5.4.1, 1.5.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqVersion.pm,1.10,1.11   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqVersion.pm,1.11,1.12   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqVersion.pm,1.12,1.13   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqVersion.pm,1.7,1.8   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqVersion.pm,1.9,1.10   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB/Biblio biofetch.pm, 1.10.4.1, 1.10.4.2 eutils.pm, 1.11, 1.11.4.1 pdf.pm, 1.6, 1.6.4.1 soap.pm, 1.10, 1.10.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Biblio soap.pm, 1.12, 1.13 biofetch.pm, 1.14, 1.15   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities Cookie.pm, 1.3.4.1, 1.3.4.2 ElinkData.pm, 1.12.4.1, 1.12.4.2 efetch.pm, 1.8, 1.8.4.1 egquery.pm, 1.6, 1.6.4.1 einfo.pm, 1.8.4.1, 1.8.4.2 elink.pm, 1.24.4.1, 1.24.4.2 epost.pm, 1.7, 1.7.4.1 esearch.pm, 1.11.4.1, 1.11.4.2 esummary.pm, 1.8, 1.8.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities DocSum.pm, 1.1, 1.2 esummary.pm, 1.14, 1.15   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities DocSum.pm, 1.3, 1.4 esummary.pm, 1.15, 1.16   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities DocSum.pm, 1.4, 1.5 esearch.pm, 1.18, 1.19 esummary.pm, 1.16, 1.17   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities DocSum.pm, NONE, 1.1 esummary.pm, 1.13, 1.14   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities DocSum.pm,1.2,1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities esearch.pm, 1.17, 1.18   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities esearch.pm, 1.19, 1.20   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities esummary.pm, 1.12, 1.13   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities QueryData.pm, NONE, 1.1 DocSum.pm, 1.5, 1.6 ElinkData.pm, 1.20, 1.21 egquery.pm, 1.10, 1.11 esearch.pm, 1.20, 1.21   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/Expression geo.pm, 1.2, 1.2.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Expression geo.pm,1.4,1.5   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB/Flat BDB.pm, 1.17, 1.17.4.1 BinarySearch.pm, 1.23, 1.23.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Flat BinarySearch.pm, 1.27, 1.28   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB/Flat/BDB embl.pm, 1.13, 1.13.4.1 fasta.pm, 1.9, 1.9.4.1 genbank.pm, 1.8, 1.8.4.1 swiss.pm, 1.7, 1.7.4.1 swissprot.pm, 1.7, 1.7.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF Aggregator.pm, 1.30, 1.30.6.1 Featname.pm, 1.9, 1.9.14.1 Feature.pm, 1.75, 1.75.2.1 Homol.pm, 1.5, 1.5.12.1 RelSegment.pm, 1.51, 1.51.4.1 Segment.pm, 1.30, 1.30.4.1 Typename.pm, 1.8, 1.8.8.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor berkeleydb.pm, 1.24, 1.24.4.1 biofetch.pm, 1.17, 1.17.8.1 biofetch_oracle.pm, 1.4, 1.4.8.1 dbi.pm, 1.60, 1.60.4.1 memory.pm, 1.46, 1.46.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor dbi.pm,1.61,1.62   Ben faga
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor/dbi caching_handle.pm, 1.12, 1.12.8.1 mysql.pm, 1.66, 1.66.4.1 mysqlace.pm, 1.2, 1.2.12.1 mysqlcmap.pm, 1.6, 1.6.4.1 mysqlopt.pm, 1.34, 1.34.12.1 oracle.pm, 1.9, 1.9.4.1 oracleace.pm, 1.1, 1.1.12.1 pg.pm, 1.20, 1.20.4.1 pg_fts.pm, 1.2, 1.2.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor/memory feature_serializer.pm, 1.2, 1.2.6.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Aggregator alignment.pm, 1.12, 1.12.6.1 clone.pm, 1.11, 1.11.6.1 coding.pm, 1.2, 1.2.6.1 match.pm, 1.1, 1.1.10.1 none.pm, 1.4, 1.4.8.1 processed_transcript.pm, 1.6, 1.6.6.1 so_transcript.pm, 1.1, 1.1.6.1 transcript.pm, 1.9, 1.9.8.1 ucsc_acembly.pm, 1.3, 1.3.8.1 ucsc_ensgene.pm, 1.3, 1.3.8.1 ucsc_genscan.pm, 1.3, 1.3.8.1 ucsc_refgene.pm, 1.3, 1.3.8.1 ucsc_sanger22.pm, 1.3, 1.3.8.1 ucsc_sanger22pseudo.pm, 1.3, 1.3.8.1 ucsc_softberry.pm, 1.3, 1.3.8.1 ucsc_twinscan.pm, 1.3, 1.3.8.1 ucsc_unigene.pm, 1.3, 1.3.8.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Util Binning.pm, 1.7, 1.7.6.1 Rearrange.pm, 1.3, 1.3.8.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Query GenBank.pm, 1.18, 1.18.2.1 WebQuery.pm, 1.15, 1.15.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.13.4.2, 1.13.4.3 Segment.pm, 1.13, 1.13.4.1 Store.pm, 1.21.4.2, 1.21.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.13.4.3, 1.13.4.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.16, 1.17   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.17, 1.18   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.18, 1.19   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.19, 1.20   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.20, 1.21   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.21, 1.22   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature Store.pm, 1.21.4.3, 1.21.4.4   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature Store.pm, 1.23, 1.24   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature Store.pm, 1.24, 1.25   Malcom Cook
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature Store.pm, 1.25, 1.26   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store berkeleydb.pm, 1.11, 1.12   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store berkeleydb.pm, 1.5.4.3, 1.5.4.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.15.4.2, 1.15.4.3 bdb.pm, 1.3, 1.3.4.1 berkeleydb.pm, 1.5.4.2, 1.5.4.3 memory.pm, 1.5.4.2, 1.5.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.21, 1.22   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.22, 1.23   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.23, 1.24   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI Iterator.pm, 1.1, 1.1.4.1 mysql.pm, 1.20.4.2, 1.20.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqVersion gi.pm, 1.4.4.1, 1.4.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqVersion gi.pm,1.4,1.4.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqVersion gi.pm,1.5,1.6   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqVersion gi.pm,1.6,1.7   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqVersion gi.pm,1.7,1.8   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqVersion gi.pm,1.8,1.9   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy entrez.pm, 1.18, 1.18.4.1 flatfile.pm, 1.15, 1.15.4.1 list.pm, 1.1.4.2, 1.1.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy entrez.pm, 1.18.4.1, 1.18.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy entrez.pm,1.20,1.21   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy list.pm, 1.7, 1.8 entrez.pm, 1.21, 1.22 flatfile.pm, 1.18, 1.19   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Event EventGeneratorI.pm, 1.11, 1.11.4.1 EventHandlerI.pm, 1.9, 1.9.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Event EventGeneratorI.pm, 1.13, 1.14   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Expression Contact.pm, 1.4, 1.4.4.1 DataSet.pm, 1.3, 1.3.4.1 Platform.pm, 1.4, 1.4.4.1 Sample.pm, 1.3, 1.3.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Expression/FeatureGroup FeatureGroupMas50.pm, 1.2, 1.2.8.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Expression/FeatureSet FeatureSetMas50.pm, 1.2, 1.2.6.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Factory AnalysisI.pm, 1.7, 1.7.4.1 ApplicationFactoryI.pm, 1.10, 1.10.4.1 DriverFactory.pm, 1.15, 1.15.4.1 FTLocationFactory.pm, 1.21.4.1, 1.21.4.2 HitFactoryI.pm, 1.11, 1.11.4.1 LocationFactoryI.pm, 1.7, 1.7.4.1 MapFactoryI.pm, 1.8, 1.8.4.1 ObjectBuilderI.pm, 1.5, 1.5.4.1 ObjectFactory.pm, 1.5, 1.5.4.1 ObjectFactoryI.pm, 1.6, 1.6.4.1 ResultFactoryI.pm, 1.10, 1.10.4.1 SeqAnalysisParserFactory.pm, 1.15, 1.15.4.1 SeqAnalysisParserFactoryI.pm, 1.12, 1.12.4.1 SequenceFactoryI.pm, 1.10, 1.10.4.1 SequenceProcessorI.pm, 1.4, 1.4.4.1 SequenceStreamI.pm, 1.6, 1.6.4.1 TreeFactoryI.pm, 1.10, 1.10.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Factory AnalysisI.pm,1.8,1.9   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Factory DriverFactory.pm, 1.16, 1.17   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gff.pm, 1.43.4.2, 1.43.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gff.pm,1.47,1.48   Scott Cain
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO ptt.pm, NONE, 1.4.2.1 bed.pm, 1.4.4.1, 1.4.4.2 gff.pm, 1.43.4.1, 1.43.4.2 gtf.pm, 1.4, 1.4.4.1 interpro.pm, 1.9, 1.9.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO ptt.pm,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graph Edge.pm, 1.11, 1.11.4.1 IO.pm, 1.17, 1.17.4.1 ProteinGraph.pm, 1.35, 1.35.4.1 SimpleGraph.pm, 1.12, 1.12.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graph/IO dip.pm, 1.14, 1.14.4.1 psi_xml.pm, 1.13, 1.13.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graph/SimpleGraph Traversal.pm, 1.16, 1.16.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graphics ConfiguratorI.pm, 1.8, 1.8.4.1 FeatureBase.pm, 1.12, 1.12.4.1 FeatureFile.pm, 1.78.4.2, 1.78.4.3 Glyph.pm, 1.113.4.2, 1.113.4.3 Panel.pm, 1.119.4.1, 1.119.4.2 Pictogram.pm, 1.14, 1.14.4.1 RendererI.pm, 1.6, 1.6.4.1 Util.pm, 1.4, 1.4.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, 1.12.4.1, 1.12.4.2   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, 1.14, 1.15   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, 1.15, 1.16   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, 1.16, 1.17   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, 1.17, 1.18   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.78.4.3, 1.78.4.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.79, 1.80   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.80, 1.81   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.81, 1.82   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm, 1.113.4.3, 1.113.4.4   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.125,1.126   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph dna.pm, 1.27, 1.28 segments.pm, 1.50, 1.51   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph Factory.pm, 1.26, 1.26.4.1 alignment.pm, 1.4, 1.4.8.1 anchored_arrow.pm, 1.10, 1.10.4.1 arrow.pm, 1.29, 1.29.4.1 box.pm, 1.6, 1.6.8.1 broken_line.pm, 1.2, 1.2.6.1 cds.pm, 1.35, 1.35.4.1 christmas_arrow.pm, 1.2, 1.2.6.1 crossbox.pm, 1.6, 1.6.8.1 dashed_line.pm, 1.3, 1.3.6.1 diamond.pm, 1.13, 1.13.6.1 dna.pm, 1.25, 1.25.4.1 dot.pm, 1.7, 1.7.6.1 dumbbell.pm, 1.4, 1.4.6.1 ellipse.pm, 1.5, 1.5.8.1 ex.pm, 1.5, 1.5.8.1 extending_arrow.pm, 1.3, 1.3.8.1 flag.pm, 1.2, 1.2.6.1 generic.pm, 1.40.2.1, 1.40.2.2 graded_segments.pm, 1.18, 1.18.6.1 group.pm, 1.10, 1.10.4.1 heterogeneous_segments.pm, 1.9, 1.9.4.1 image.pm, 1.3, 1.3.4.1 lightning.pm, 1.2, 1.2.4.1 line.pm, 1.6, 1.6.4.1 merge_parts.pm, 1.2, 1.2.6.1 merged_alignment.pm, 1.4, 1.4.6.1 minmax.pm, 1.2, 1.2.6.1 oval.pm, 1.4, 1.4.8.1 pentagram.pm, 1.2, 1.2.6.1 pinsertion.pm, 1.7, 1.7.8.1 primers.pm, 1.7.4.2, 1.7.4.3 processed_transcript.pm, 1.12, 1.12.4.1 protein.pm, 1.2, 1.2.4.1 ragged_ends.pm, 1.1, 1.1.6.1 redgreen_box.pm, 1.5, 1.5.8.1 redgreen_segment.pm, 1.3, 1.3.1! 0.1 repeating_shape.pm, 1.2, 1.2.6.1 ruler_arrow.pm, 1.5, 1.5.12.1 saw_teeth.pm, 1.3, 1.3.6.1 segmented_keyglyph.pm, 1.6, 1.6.6.1 segments.pm, 1.44.2.1, 1.44.2.2 so_transcript.pm, 1.2, 1.2.6.1 span.pm, 1.6, 1.6.8.1 splice_site.pm, 1.3, 1.3.10.1 text_in_box.pm, 1.2, 1.2.6.1 three_letters.pm, 1.2, 1.2.6.1 tic_tac_toe.pm, 1.2, 1.2.6.1 toomany.pm, 1.5, 1.5.8.1 track.pm, 1.10, 1.10.6.1 transcript.pm, 1.23, 1.23.4.1 transcript2.pm, 1.28, 1.28.4.1 translation.pm, 1.36.4.1, 1.36.4.2 triangle.pm, 1.11, 1.11.6.1 two_bolts.pm, 1.2, 1.2.6.1 wave.pm, 1.2, 1.2.6.1 weighted_arrow.pm, 1.2, 1.2.6.1 whiskerplot.pm, 1.2, 1.2.6.1 xyplot.pm, 1.26, 1.26.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph segments.pm, 1.44.2.2, 1.44.2.3   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph segments.pm, 1.44.2.3, 1.44.2.4   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph segments.pm, 1.51, 1.52   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph segments.pm, 1.52, 1.53   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph segments.pm, 1.53, 1.54   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Index Abstract.pm, 1.49, 1.49.4.1 AbstractSeq.pm, 1.24, 1.24.4.1 Blast.pm, 1.21, 1.21.4.1 EMBL.pm, 1.32, 1.32.4.1 Fasta.pm, 1.35, 1.35.4.1 Fastq.pm, 1.12, 1.12.4.1 GenBank.pm, 1.23, 1.23.4.1 Hmmer.pm, 1.10, 1.10.4.1 Qual.pm, 1.9, 1.9.4.1 SwissPfam.pm, 1.24, 1.24.4.1 Swissprot.pm, 1.26, 1.26.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Index Abstract.pm,1.52,1.53   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Index Abstract.pm,1.53,1.54   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Index Abstract.pm,1.54,1.55   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Index AbstractSeq.pm,1.26,1.27   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Index Blast.pm, 1.21.4.1, 1.21.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Index Blast.pm,1.24,1.25   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Index Blast.pm,1.25,1.26   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Index Blast.pm,1.26,1.27   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Index Swissprot.pm,1.28,1.29   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/LiveSeq AARange.pm, 1.12, 1.12.4.1 DNA.pm, 1.11, 1.11.4.1 Exon.pm, 1.10, 1.10.4.1 Gene.pm, 1.15, 1.15.4.1 Intron.pm, 1.9, 1.9.4.1 Mutation.pm, 1.13, 1.13.4.1 Mutator.pm, 1.33.4.2, 1.33.4.3 Prim_Transcript.pm, 1.9, 1.9.4.1 Range.pm, 1.9, 1.9.4.1 Repeat_Region.pm, 1.9, 1.9.4.1 Repeat_Unit.pm, 1.9, 1.9.4.1 SeqI.pm, 1.31, 1.31.4.1 Transcript.pm, 1.21, 1.21.4.1 Translation.pm, 1.15, 1.15.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/LiveSeq/IO BioPerl.pm, 1.20, 1.20.4.1 Loader.pm, 1.19, 1.19.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Location Atomic.pm, 1.16, 1.16.4.1 AvWithinCoordPolicy.pm, 1.8, 1.8.4.1 CoordinatePolicyI.pm, 1.8, 1.8.4.1 Fuzzy.pm, 1.33.4.1, 1.33.4.2 FuzzyLocationI.pm, 1.21, 1.21.4.1 NarrowestCoordPolicy.pm, 1.11, 1.11.4.1 Simple.pm, 1.41, 1.41.4.1 Split.pm, 1.46, 1.46.4.1 SplitLocationI.pm, 1.18, 1.18.4.1 WidestCoordPolicy.pm, 1.10, 1.10.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Location Split.pm, 1.46.4.1, 1.46.4.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Location Split.pm, 1.46.4.2, 1.46.4.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Location Split.pm,1.49,1.50   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Location Split.pm,1.50,1.51   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Location Split.pm,1.51,1.52   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Map Clone.pm, 1.6, 1.6.4.1 Contig.pm, 1.6, 1.6.4.1 CytoMap.pm, 1.10, 1.10.4.1 CytoMarker.pm, 1.12, 1.12.4.1 CytoPosition.pm, 1.16, 1.16.4.1 EntityI.pm, 1.3, 1.3.4.1 FPCMarker.pm, 1.7.4.2, 1.7.4.3 LinkageMap.pm, 1.17, 1.17.4.1 LinkagePosition.pm, 1.15, 1.15.4.1 MapI.pm, 1.15.4.1, 1.15.4.2 Mappable.pm, 1.6.4.1, 1.6.4.2 MappableI.pm, 1.17.4.1, 1.17.4.2 Marker.pm, 1.22.4.1, 1.22.4.2 MarkerI.pm, 1.16.4.1, 1.16.4.2 Microsatellite.pm, 1.13, 1.13.4.1 OrderedPosition.pm, 1.12, 1.12.4.1 OrderedPositionWithDistance.pm, 1.10, 1.10.4.1 Physical.pm, 1.8.4.2, 1.8.4.3 Position.pm, 1.18, 1.18.4.1 PositionHandler.pm, 1.3, 1.3.4.1 PositionHandlerI.pm, 1.2, 1.2.4.1 PositionI.pm, 1.17, 1.17.4.1 Relative.pm, 1.1.4.1, 1.1.4.2 RelativeI.pm, 1.1.4.1, 1.1.4.2 SimpleMap.pm, 1.17.4.1, 1.17.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Map MapI.pm, 1.15.4.2, 1.15.4.3 Mappable.pm, 1.6.4.2, 1.6.4.3 Position.pm, 1.18.4.1, 1.18.4.2 PositionI.pm, 1.17.4.1, 1.17.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Map MapI.pm, 1.15.4.3, 1.15.4.4 Mappable.pm, 1.6.4.3, 1.6.4.4 Position.pm, 1.18.4.2, 1.18.4.3 PositionI.pm, 1.17.4.2, 1.17.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Map MapI.pm, 1.19, 1.20 Mappable.pm, 1.10, 1.11 Position.pm, 1.21, 1.22 PositionI.pm, 1.21, 1.22   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/MapIO fpc.pm, 1.6.4.1, 1.6.4.2 mapmaker.pm, 1.10, 1.10.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Matrix Generic.pm, 1.14, 1.14.4.1 IO.pm, 1.5, 1.5.4.1 MatrixI.pm, 1.4, 1.4.4.1 PhylipDist.pm, 1.16, 1.16.4.1 Scoring.pm, 1.4, 1.4.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/IO phylip.pm, 1.3, 1.3.4.1 scoring.pm, 1.4, 1.4.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM IO.pm, 1.15, 1.15.4.1 InstanceSite.pm, 1.14.4.1, 1.14.4.2 InstanceSiteI.pm, 1.10, 1.10.4.1 ProtMatrix.pm, 1.16, 1.16.4.1 ProtPsm.pm, 1.8, 1.8.4.1 Psm.pm, 1.14, 1.14.4.1 PsmHeader.pm, 1.11, 1.11.4.1 PsmHeaderI.pm, 1.10, 1.10.4.1 PsmI.pm, 1.8, 1.8.4.1 SiteMatrix.pm, 1.31.4.2, 1.31.4.3 SiteMatrixI.pm, 1.16, 1.16.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM/IO mast.pm, 1.21.4.1, 1.21.4.2 masta.pm, 1.10.4.2, 1.10.4.3 meme.pm, 1.20, 1.20.4.1 psiblast.pm, 1.11, 1.11.4.1 transfac.pm, 1.14.4.2, 1.14.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Ontology DocumentRegistry.pm, 1.11, 1.11.4.1 GOterm.pm, 1.22, 1.22.4.1 InterProTerm.pm, 1.10, 1.10.4.1 OBOEngine.pm, 1.6.4.2, 1.6.4.3 OBOterm.pm, 1.5, 1.5.4.1 Ontology.pm, 1.18.4.2, 1.18.4.3 OntologyEngineI.pm, 1.15, 1.15.4.1 OntologyI.pm, 1.9, 1.9.4.1 OntologyStore.pm, 1.13, 1.13.4.1 Path.pm, 1.7, 1.7.4.1 PathI.pm, 1.6, 1.6.4.1 Relationship.pm, 1.14, 1.14.4.1 RelationshipFactory.pm, 1.5, 1.5.4.1 RelationshipI.pm, 1.9, 1.9.4.1 RelationshipType.pm, 1.17, 1.17.4.1 SimpleGOEngine.pm, 1.36, 1.36.4.1 SimpleOntologyEngine.pm, 1.17.4.2, 1.17.4.3 Term.pm, 1.31, 1.31.4.1 TermFactory.pm, 1.7, 1.7.4.1 TermI.pm, 1.17, 1.17.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Ontology Ontology.pm, 1.22, 1.23 InterProTerm.pm, 1.12, 1.13 PathI.pm, 1.8, 1.9 OntologyI.pm, 1.10, 1.11   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Ontology/SimpleGOEngine GraphAdaptor.pm, 1.6, 1.6.4.1 GraphAdaptor02.pm, 1.6, 1.6.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/OntologyIO InterProParser.pm, 1.11, 1.11.4.1 dagflat.pm, 1.29, 1.29.4.1 goflat.pm, 1.7, 1.7.4.1 obo.pm, 1.8.4.3, 1.8.4.4 simplehierarchy.pm, 1.17, 1.17.4.1 soflat.pm, 1.7, 1.7.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/OntologyIO InterProParser.pm, 1.13, 1.14   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/OntologyIO/Handlers BaseSAXHandler.pm, 1.4, 1.4.6.1 InterProHandler.pm, 1.15, 1.15.4.1 InterPro_BioSQL_Handler.pm, 1.7, 1.7.6.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/OntologyIO/Handlers InterProHandler.pm, 1.17, 1.18   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Phenotype Correlate.pm, 1.9, 1.9.4.1 Measure.pm, 1.9, 1.9.4.1 Phenotype.pm, 1.12, 1.12.4.1 PhenotypeI.pm, 1.11, 1.11.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Phenotype/MeSH Term.pm, 1.7, 1.7.4.1 Twig.pm, 1.7, 1.7.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Phenotype/OMIM MiniMIMentry.pm, 1.9, 1.9.4.1 OMIMentry.pm, 1.16, 1.16.4.1 OMIMentryAllelicVariant.pm, 1.9, 1.9.4.1 OMIMparser.pm, 1.20, 1.20.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/PopGen Genotype.pm, 1.10, 1.10.4.1 GenotypeI.pm, 1.3, 1.3.4.1 HtSNP.pm, 1.6, 1.6.4.1 IO.pm, 1.6, 1.6.4.1 Individual.pm, 1.15, 1.15.4.1 IndividualI.pm, 1.7, 1.7.4.1 Marker.pm, 1.7, 1.7.4.1 MarkerI.pm, 1.6, 1.6.4.1 PopStats.pm, 1.10, 1.10.4.1 Population.pm, 1.19, 1.19.4.1 PopulationI.pm, 1.9, 1.9.4.1 Statistics.pm, 1.34, 1.34.4.1 TagHaplotype.pm, 1.5, 1.5.4.1 Utilities.pm, 1.7, 1.7.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/PopGen Marker.pm,1.8,1.9   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/PopGen Statistics.pm,1.35,1.36   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/PopGen/IO csv.pm, 1.8, 1.8.4.1 hapmap.pm, 1.8, 1.8.4.1 phase.pm, 1.7, 1.7.4.1 prettybase.pm, 1.8, 1.8.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/PopGen/Simulation Coalescent.pm, 1.11, 1.11.4.1 GeneticDrift.pm, 1.5, 1.5.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/PopGen/Simulation GeneticDrift.pm, 1.6, 1.7 Coalescent.pm, 1.12, 1.13   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Restriction Analysis.pm, 1.19, 1.19.4.1 Enzyme.pm, 1.16, 1.16.4.1 EnzymeCollection.pm, 1.10, 1.10.4.1 EnzymeI.pm, 1.6, 1.6.4.1 IO.pm, 1.12, 1.12.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Restriction EnzymeCollection.pm, 1.12, 1.13   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Restriction/Enzyme MultiCut.pm, 1.7, 1.7.4.1 MultiSite.pm, 1.7, 1.7.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Restriction/IO bairoch.pm, 1.8, 1.8.4.1 base.pm, 1.11, 1.11.4.1 itype2.pm, 1.6, 1.6.4.1 withrefm.pm, 1.8, 1.8.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Restriction/IO bairoch.pm, 1.9, 1.10   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Root Err.pm, 1.24, NONE Global.pm, 1.10, NONE IOManager.pm, 1.23, NONE Object.pm, 1.37, NONE Utilities.pm, 1.37, NONE Vector.pm, 1.20, NONE Xref.pm, 1.17, NONE   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Root Exception.pm, 1.15, 1.15.8.1 HTTPget.pm, 1.14, 1.14.4.1 IO.pm, 1.61, 1.61.4.1 Root.pm, 1.35, 1.35.6.1 RootI.pm, 1.69.4.3, 1.69.4.4 Storable.pm, 1.7, 1.7.4.1 Version.pm, 1.9, 1.9.4.1 Err.pm, 1.21, NONE Global.pm, 1.9, NONE IOManager.pm, 1.19, NONE Object.pm, 1.31, NONE Utilities.pm, 1.31, NONE Vector.pm, 1.17, NONE Xref.pm, 1.15, NONE   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Root HTTPget.pm,1.16,1.17   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Root IO.pm,1.64,1.65   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Root Root.pm, 1.39, 1.40 Object.pm, 1.36, 1.37 RootI.pm, 1.73, 1.74   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Root Root.pm,1.40,1.41   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Root Root.pm,1.41,1.42   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Root Storable.pm,1.9,1.10   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Root Version.pm,1.10,1.11   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Root Version.pm,1.11,1.12   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search BlastStatistics.pm, 1.5, 1.5.4.1 BlastUtils.pm, 1.10, 1.10.8.1 DatabaseI.pm, 1.10, 1.10.4.1 GenericDatabase.pm, 1.9, 1.9.4.1 GenericStatistics.pm, 1.6, 1.6.2.1 Processor.pm, 1.12, 1.12.4.1 SearchUtils.pm, 1.17.4.2, 1.17.4.3 StatisticsI.pm, 1.5, 1.5.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit BlastHit.pm, 1.17, 1.17.4.1 Fasta.pm, 1.10, 1.10.4.1 GenericHit.pm, 1.37.4.1, 1.37.4.2 HMMERHit.pm, 1.6, 1.6.4.1 HitFactory.pm, 1.6, 1.6.4.1 HitI.pm, 1.24, 1.24.4.1 HmmpfamHit.pm, 1.1.2.1, 1.1.2.2 PsiBlastHit.pm, 1.6, 1.6.4.1 PullHitI.pm, 1.1.2.1, 1.1.2.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit GenericHit.pm, 1.39, 1.40 BlastHit.pm, 1.19, 1.20 PsiBlastHit.pm, 1.10, 1.11   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit HmmpfamHit.pm, 1.4, 1.5 BlastHit.pm, 1.18, 1.19   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit PsiBlastHit.pm, 1.11, 1.12   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP BlastHSP.pm, 1.28, 1.28.4.1 FastaHSP.pm, 1.10, 1.10.4.1 GenericHSP.pm, 1.68.4.4, 1.68.4.5 HMMERHSP.pm, 1.8, 1.8.4.1 HSPFactory.pm, 1.8, 1.8.4.1 HSPI.pm, 1.36.4.1, 1.36.4.2 HmmpfamHSP.pm, 1.1.2.1, 1.1.2.2 PSLHSP.pm, 1.4, 1.4.4.1 PsiBlastHSP.pm, 1.7, 1.7.4.1 PullHSPI.pm, 1.1.2.1, 1.1.2.2 WABAHSP.pm, 1.9, 1.9.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP GenericHSP.pm, 1.74, 1.75   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP HmmpfamHSP.pm, 1.4, 1.5   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP PsiBlastHSP.pm, 1.11, 1.12 BlastHSP.pm, 1.32, 1.33   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Search/Iteration GenericIteration.pm, 1.6.4.1, 1.6.4.2 IterationI.pm, 1.8, 1.8.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Iteration GenericIteration.pm, 1.9, 1.10   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result BlastResult.pm, 1.22.4.2, 1.22.4.3 GenericResult.pm, 1.23.2.4, 1.23.2.5 HMMERResult.pm, 1.6, 1.6.4.1 HmmpfamResult.pm, 1.1.2.3, 1.1.2.4 PullResultI.pm, 1.1.2.1, 1.1.2.2 ResultFactory.pm, 1.6, 1.6.4.1 ResultI.pm, 1.23, 1.23.4.1 WABAResult.pm, 1.5, 1.5.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result BlastResult.pm, 1.25, 1.26 HmmpfamResult.pm, 1.4, 1.5   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result GenericResult.pm, 1.23.2.5, 1.23.2.6   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result GenericResult.pm, 1.23.2.6, 1.23.2.7   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result GenericResult.pm, 1.26, 1.27   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm, 1.107, 1.108 hmmer.pm, 1.36, 1.37   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm, 1.99.4.3, 1.99.4.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.108,1.109   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO EventHandlerI.pm, 1.13, 1.13.4.1 FastHitEventBuilder.pm, 1.13, 1.13.4.1 IteratedSearchResultEventBuilder.pm, 1.10.4.1, 1.10.4.2 SearchResultEventBuilder.pm, 1.41.4.1, 1.41.4.2 SearchWriterI.pm, 1.10, 1.10.4.1 axt.pm, 1.8.4.1, 1.8.4.2 blast.pm, 1.99.4.2, 1.99.4.3 blasttable.pm, 1.7, 1.7.4.1 blastxml.pm, 1.36.4.2, 1.36.4.3 exonerate.pm, 1.17, 1.17.4.1 fasta.pm, 1.50, 1.50.4.1 hmmer.pm, 1.34, 1.34.4.1 hmmer_pull.pm, 1.1.2.3, 1.1.2.4 megablast.pm, 1.7, 1.7.4.1 psl.pm, 1.13, 1.13.4.1 sim4.pm, 1.13, 1.13.4.1 waba.pm, 1.16, 1.16.4.1 wise.pm, 1.6, 1.6.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO hmmer_pull.pm,1.5,1.6   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO megablast.pm,1.9,1.10   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/Writer BSMLResultWriter.pm, 1.4, 1.4.4.1 GbrowseGFF.pm, 1.15, 1.15.4.1 HSPTableWriter.pm, 1.17, 1.17.4.1 HTMLResultWriter.pm, 1.38, 1.38.4.1 HitTableWriter.pm, 1.20, 1.20.4.1 ResultTableWriter.pm, 1.19, 1.19.4.1 TextResultWriter.pm, 1.18, 1.18.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/Writer HTMLResultWriter.pm, 1.39, 1.40   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/Writer HTMLResultWriter.pm, 1.40, 1.41   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Seq BaseSeqProcessor.pm, 1.7, 1.7.4.1 EncodedSeq.pm, 1.11, 1.11.4.1 LargeLocatableSeq.pm, 1.5, 1.5.4.1 LargePrimarySeq.pm, 1.32, 1.32.4.1 LargeSeq.pm, 1.15, 1.15.4.1 LargeSeqI.pm, 1.6, 1.6.4.1 Meta.pm, 1.12, 1.12.4.1 MetaI.pm, 1.10, 1.10.4.1 PrimaryQual.pm, 1.24, 1.24.4.1 PrimedSeq.pm, 1.23, 1.23.4.1 QualI.pm, 1.11, 1.11.4.1 Quality.pm, 1.10, 1.10.4.1 RichSeq.pm, 1.19, 1.19.4.1 RichSeqI.pm, 1.14, 1.14.4.1 SeqBuilder.pm, 1.9, 1.9.4.1 SeqFactory.pm, 1.11, 1.11.4.1 SeqFastaSpeedFactory.pm, 1.7, 1.7.4.1 SeqWithQuality.pm, 1.27, 1.27.4.1 SequenceTrace.pm, 1.14, 1.14.4.1 TraceI.pm, 1.9, 1.9.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Seq SeqBuilder.pm,1.10,1.11   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Seq/Meta Array.pm,1.13,1.13.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Annotated.pm, 1.34, 1.34.4.1 AnnotationAdaptor.pm, 1.10, 1.10.4.1 Collection.pm, 1.18, 1.18.4.1 CollectionI.pm, 1.5, 1.5.4.1 Computation.pm, 1.16, 1.16.4.1 FeaturePair.pm, 1.22, 1.22.4.1 Generic.pm, 1.103, 1.103.4.1 PositionProxy.pm, 1.9, 1.9.4.1 Primer.pm, 1.21, 1.21.4.1 Similarity.pm, 1.16, 1.16.4.1 SimilarityPair.pm, 1.30, 1.30.4.1 TypedSeqFeatureI.pm, 1.7, 1.7.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Annotated.pm, 1.34.4.1, 1.34.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Annotated.pm, 1.34.4.2, 1.34.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Annotated.pm, 1.35, 1.36   Scott Cain
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Collection.pm, 1.19, 1.20   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature/Gene Exon.pm, 1.15, 1.15.4.1 ExonI.pm, 1.11, 1.11.4.1 GeneStructure.pm, 1.21, 1.21.4.1 GeneStructureI.pm, 1.12, 1.12.4.1 Intron.pm, 1.10, 1.10.4.1 NC_Feature.pm, 1.11, 1.11.4.1 Poly_A_site.pm, 1.7, 1.7.4.1 Promoter.pm, 1.8, 1.8.4.1 Transcript.pm, 1.38, 1.38.4.1 TranscriptI.pm, 1.13, 1.13.4.1 UTR.pm, 1.10, 1.10.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature/SiRNA Oligo.pm, 1.6, 1.6.4.1 Pair.pm, 1.6, 1.6.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature/SiRNA Pair.pm, 1.7, 1.8 Oligo.pm, 1.7, 1.8   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature/Tools FeatureNamer.pm, 1.6, 1.6.4.1 IDHandler.pm, 1.10, 1.10.4.1 TypeMapper.pm, 1.14, 1.14.4.1 Unflattener.pm, 1.37.4.1, 1.37.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.108,1.109   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.109,1.110   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.92.4.3,1.92.4.4   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.92.4.4,1.92.4.5   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO FTHelper.pm, 1.61, 1.61.4.1 MultiFile.pm, 1.12, 1.12.4.1 abi.pm, 1.14, 1.14.4.1 ace.pm, 1.17, 1.17.4.1 agave.pm, 1.15, 1.15.4.1 alf.pm, 1.12, 1.12.4.1 asciitree.pm, 1.4, 1.4.4.1 bsml.pm, 1.24, 1.24.4.1 bsml_sax.pm, 1.4, 1.4.4.1 chadoxml.pm, 1.19, 1.19.4.1 chaos.pm, 1.10, 1.10.4.1 chaosxml.pm, 1.3, 1.3.6.1 ctf.pm, 1.15, 1.15.4.1 embl.pm, 1.92.4.2, 1.92.4.3 entrezgene.pm, 1.22.4.1, 1.22.4.2 excel.pm, 1.4, 1.4.4.1 exp.pm, 1.15, 1.15.4.1 fasta.pm, 1.58, 1.58.4.1 fastq.pm, 1.15, 1.15.4.1 game.pm, 1.38, 1.38.4.1 gcg.pm, 1.26, 1.26.4.1 genbank.pm, 1.140.2.2, 1.140.2.3 interpro.pm, 1.9, 1.9.4.1 kegg.pm, 1.18, 1.18.4.1 largefasta.pm, 1.24, 1.24.4.1 lasergene.pm, 1.5, 1.5.4.1 locuslink.pm, 1.12, 1.12.4.1 metafasta.pm, 1.9, 1.9.4.1 phd.pm, 1.21, 1.21.4.1 pir.pm, 1.23, 1.23.4.1 pln.pm, 1.12, 1.12.4.1 qual.pm, 1.30, 1.30.4.1 raw.pm, 1.21, 1.21.4.1 scf.pm, 1.36, 1.36.4.1 strider.pm, 1.6.4.1, 1.6.4.2 swiss.pm, 1.92.4.1, 1.92.4.2 tab.pm, 1.6, 1.6.4.1 table.pm, 1.4, 1.4.4.1 tigr.pm, 1.12, 1.12.4.1 tigrxml.pm, 1.8, 1.8.4.1 tinyseq.pm, 1.7, 1! .7.4.1 ztr.pm, 1.14, 1.14.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm, 1.140.2.3, 1.140.2.4   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.151,1.152   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.153,1.154   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.154,1.155   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO interpro.pm, 1.9.4.1, 1.9.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO interpro.pm,1.11,1.12   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO interpro.pm,1.12,1.13   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO phd.pm,1.21.4.1,1.21.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO phd.pm,1.23,1.24   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO swiss.pm, 1.92.4.2, 1.92.4.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO swiss.pm, 1.99, 1.100 genbank.pm, 1.152, 1.153   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO swiss.pm,1.100,1.101   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO tinyseq.pm,1.9,1.10   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO/game featHandler.pm, 1.15, 1.15.4.1 gameHandler.pm, 1.8, 1.8.4.1 gameSubs.pm, 1.9, 1.9.4.1 gameWriter.pm, 1.13, 1.13.4.1 seqHandler.pm, 1.27, 1.27.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO/tinyseq tinyseqHandler.pm, 1.5, 1.5.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO/tinyseq tinyseqHandler.pm, 1.7, 1.8   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Structure Atom.pm, 1.12, 1.12.4.1 Chain.pm, 1.11, 1.11.4.1 Entry.pm, 1.27, 1.27.4.1 IO.pm, 1.12, 1.12.4.1 Model.pm, 1.10, 1.10.4.1 Residue.pm, 1.11, 1.11.4.1 StructureI.pm, 1.7, 1.7.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Structure/IO pdb.pm, 1.17, 1.17.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Structure/SecStr/DSSP Res.pm, 1.10.4.2, 1.10.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Structure/SecStr/STRIDE Res.pm, 1.9, 1.9.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Symbol Alphabet.pm, 1.10, 1.10.4.1 AlphabetI.pm, 1.8, 1.8.4.1 DNAAlphabet.pm, 1.6, 1.6.4.1 ProteinAlphabet.pm, 1.7, 1.7.2.1 Symbol.pm, 1.9, 1.9.4.1 SymbolI.pm, 1.9, 1.9.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Symbol SymbolI.pm,1.10,1.11   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Taxonomy FactoryI.pm, 1.4, 1.4.4.1 Node.pm, 1.17, 1.17.4.1 Taxon.pm, 1.5, 1.5.4.1 Tree.pm, 1.3, 1.3.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools AlignFactory.pm, 1.8, 1.8.14.1 AnalysisResult.pm, 1.17, 1.17.4.1 BPbl2seq.pm, 1.29, 1.29.4.1 BPlite.pm, 1.42, 1.42.4.1 BPpsilite.pm, 1.26, 1.26.4.1 Blat.pm, 1.7, 1.7.4.1 CodonTable.pm, 1.37, 1.37.2.1 Coil.pm, 1.6, 1.6.4.1 ECnumber.pm, 1.11, 1.11.4.1 EPCR.pm, 1.18, 1.18.4.1 ERPIN.pm, 1.5, 1.5.4.1 ESTScan.pm, 1.14, 1.14.4.1 Eponine.pm, 1.13, 1.13.4.1 Est2Genome.pm, 1.17, 1.17.4.1 Fgenesh.pm, 1.10.4.1, 1.10.4.2 FootPrinter.pm, 1.8, 1.8.4.1 GFF.pm, 1.58, 1.58.4.1 Gel.pm, 1.11, 1.11.4.1 Geneid.pm, 1.5, 1.5.4.1 Genemark.pm, 1.17, 1.17.4.1 Genewise.pm, 1.25, 1.25.4.1 Genomewise.pm, 1.6, 1.6.4.1 Genscan.pm, 1.29, 1.29.4.1 Glimmer.pm, 1.4, 1.4.4.1 Grail.pm, 1.11, 1.11.4.1 GuessSeqFormat.pm, 1.15, 1.15.4.1 HMM.pm, 1.8, 1.8.4.1 Hmmpfam.pm, 1.8, 1.8.4.1 IUPAC.pm, 1.29, 1.29.2.1 Lucy.pm, 1.15, 1.15.4.1 MZEF.pm, 1.14, 1.14.4.1 OddCodes.pm, 1.19, 1.19.4.1 Primer3.pm, 1.20, 1.20.4.1 Prints.pm, 1.13, 1.13.4.1 Profile.pm, 1.8, 1.8.4.1 Promoterwise.pm, 1.8, 1.8.4.1 PrositeScan.pm, 1.2, 1.2.8.1 Pseudowise.pm, 1.10, 1.10.4.1 QRNA.pm, 1.5, 1! .5.4.1 RNAMotif.pm, 1.10.4.3, 1.10.4.4 RandomDistFunctions.pm, 1.7, 1.7.4.1 RepeatMasker.pm, 1.10, 1.10.4.1 RestrictionEnzyme.pm, 1.35, 1.35.4.1 Seg.pm, 1.10, 1.10.4.1 SeqPattern.pm, 1.21, 1.21.4.1 SeqStats.pm, 1.30, 1.30.4.1 SeqWords.pm, 1.17, 1.17.4.1 SiRNA.pm, 1.13, 1.13.4.1 Sigcleave.pm, 1.22, 1.22.4.1 Signalp.pm, 1.8, 1.8.4.1 Tmhmm.pm, 1.10, 1.10.4.1 dpAlign.pm, 1.18, 1.18.4.1 ipcress.pm, 1.8, 1.8.4.1 isPcr.pm, 1.9, 1.9.4.1 pICalculator.pm, 1.9, 1.9.4.1 pSW.pm, 1.27, 1.27.4.1 tRNAscanSE.pm, 1.5, 1.5.2.1 Blast.pm, 1.37, NONE SeqAnal.pm, 1.18, NONE WWW.pm, 1.16, NONE   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools BPbl2seq.pm, 1.30, 1.31 BPpsilite.pm, 1.29, 1.30   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools BPbl2seq.pm, 1.31, 1.32 BPlite.pm, 1.44, 1.45 BPpsilite.pm, 1.30, 1.31 RestrictionEnzyme.pm, 1.40, 1.41   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools BPlite.pm, 1.43, 1.44 RestrictionEnzyme.pm, 1.39, 1.40   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools BPlite.pm,1.45,1.46   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools BPpsilite.pm,1.31,1.32   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools BPpsilite.pm,1.32,1.33   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools Fgenesh.pm,1.15,1.16   Malcom Cook
• [Bioperl-guts-l] bioperl-live/Bio/Tools Genomewise.pm, 1.8, 1.9 Genewise.pm, 1.26, 1.27 Geneid.pm, 1.6, 1.7   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools GuessSeqFormat.pm, 1.18, 1.19   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Tools Primer3.pm,1.22,1.23   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools RestrictionEnzyme.pm, 1.37, 1.38   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools RestrictionEnzyme.pm, 1.38, 1.39   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools Signalp.pm, 1.11, 1.12 Tmhmm.pm, 1.11, 1.12   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools SiRNA.pm, 1.14, 1.15 QRNA.pm, 1.6, 1.7 RepeatMasker.pm, 1.12, 1.13 Est2Genome.pm, 1.18, 1.19   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools Tmhmm.pm, 1.10.4.1, 1.10.4.2 Signalp.pm, 1.8.4.1, 1.8.4.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Alignment Consed.pm, 1.41, 1.41.4.1 Trim.pm, 1.21, 1.21.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Alignment Consed.pm, 1.46, 1.47   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis SimpleAnalysisBase.pm, 1.12, 1.12.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/DNA ESEfinder.pm, 1.12.4.1, 1.12.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/DNA ESEfinder.pm, 1.16, 1.17   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein Domcut.pm, 1.14, 1.14.4.1 ELM.pm, 1.12, 1.12.4.1 GOR4.pm, 1.12, 1.12.4.1 HNN.pm, 1.12, 1.12.4.1 Mitoprot.pm, 1.8, 1.8.4.1 NetPhos.pm, 1.13, 1.13.4.1 Scansite.pm, 1.16, 1.16.4.1 Sopma.pm, 1.13, 1.13.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Blast CHANGES, 1.7, NONE HSP.pm, 1.23, NONE HTML.pm, 1.19, NONE README, 1.7, NONE Sbjct.pm, 1.25, NONE   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/BPlite HSP.pm, 1.31, 1.31.4.1 Iteration.pm, 1.18, 1.18.4.1 Sbjct.pm, 1.33, 1.33.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/BPlite Iteration.pm, 1.20, 1.21   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/EMBOSS Palindrome.pm, 1.4, 1.4.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/HMMER Domain.pm, 1.12, 1.12.8.1 Results.pm, 1.28, 1.28.4.1 Set.pm, 1.15, 1.15.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo Molphy.pm, 1.9, 1.9.4.1 PAML.pm, 1.49, 1.49.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.50,1.51   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.51,1.52   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/Molphy Result.pm, 1.11, 1.12   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/Molphy Result.pm, 1.9, 1.9.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/PAML ModelResult.pm, 1.7, 1.7.4.1 Result.pm, 1.22, 1.22.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/PAML Result.pm, 1.24, 1.25 ModelResult.pm, 1.10, 1.11   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/Phylip ProtDist.pm, 1.9, 1.9.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Prediction Exon.pm, 1.16, 1.16.4.1 Gene.pm, 1.15, 1.15.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Primer AssessorI.pm, 1.5, 1.5.4.1 Feature.pm, 1.5, 1.5.4.1 Pair.pm, 1.4, 1.4.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Primer/Assessor Base.pm, 1.4, 1.4.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run GenericParameters.pm, 1.6, 1.6.2.1 ParametersI.pm, 1.5, 1.5.4.1 RemoteBlast.pm, 1.38, 1.38.4.1 StandAloneBlast.pm, 1.63, 1.63.4.1 WrapperBase.pm, 1.21, 1.21.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run RemoteBlast.pm, 1.38.4.1, 1.38.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run RemoteBlast.pm, 1.41, 1.42   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run StandAloneBlast.pm, 1.66, 1.67 WrapperBase.pm, 1.23, 1.24   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run WrapperBase.pm, 1.21.4.1, 1.21.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run WrapperBase.pm, 1.24, 1.25   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Sim4 Exon.pm, 1.16, 1.16.4.1 Results.pm, 1.25, 1.25.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/SiRNA/Ruleset saigo.pm, 1.4, 1.4.4.1 tuschl.pm, 1.4, 1.4.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/SiRNA/Ruleset saigo.pm, 1.5, 1.6   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/SiRNA/Ruleset tuschl.pm, 1.6, 1.7   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Spidey Exon.pm, 1.6, 1.6.4.1 Results.pm, 1.10, 1.10.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tree AlleleNode.pm, 1.13, 1.13.4.1 Compatible.pm, 1.5.4.2, 1.5.4.3 DistanceFactory.pm, 1.8, 1.8.4.1 Node.pm, 1.49.4.1, 1.49.4.2 NodeI.pm, 1.35, 1.35.4.1 NodeNHX.pm, 1.10, 1.10.4.1 RandomFactory.pm, 1.18, 1.18.4.1 Statistics.pm, 1.12, 1.12.4.1 Tree.pm, 1.21, 1.21.4.1 TreeFunctionsI.pm, 1.28, 1.28.2.1 TreeI.pm, 1.17, 1.17.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tree AlleleNode.pm, 1.14, 1.15 DistanceFactory.pm, 1.9, 1.10   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tree/Draw Cladogram.pm, 1.12.4.1, 1.12.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO cluster.pm,1.6,1.7   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO TreeEventBuilder.pm, 1.23, 1.23.4.1 cluster.pm, 1.4, 1.4.4.1 lintree.pm, 1.8, 1.8.4.1 newick.pm, 1.36.4.1, 1.36.4.2 nexus.pm, 1.13, 1.13.4.1 nhx.pm, 1.18, 1.18.4.1 pag.pm, 1.9, 1.9.4.1 svggraph.pm, 1.5, 1.5.4.1 tabtree.pm, 1.10, 1.10.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO TreeEventBuilder.pm, 1.24, 1.25   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Variation AAChange.pm, 1.20, 1.20.4.1 AAReverseMutate.pm, 1.12, 1.12.4.1 Allele.pm, 1.15, 1.15.4.1 DNAMutation.pm, 1.18, 1.18.4.1 IO.pm, 1.22, 1.22.4.1 RNAChange.pm, 1.17, 1.17.4.1 SNP.pm, 1.16, 1.16.4.1 SeqDiff.pm, 1.23, 1.23.4.1 VariantI.pm, 1.20, 1.20.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Variation/IO flat.pm, 1.19, 1.19.4.1 xml.pm, 1.19, 1.19.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/doc/Deobfuscator Changes,1.2,1.3   Dave Messina
• [Bioperl-guts-l] bioperl-live/doc/Deobfuscator excluded_modules.txt, NONE, 1.1 Changes, 1.1, 1.2 MANIFEST, 1.1, 1.2 META.yml, 1.1, 1.2 README, 1.1, 1.2   Dave Messina
• [Bioperl-guts-l] bioperl-live/doc/Deobfuscator README,1.2,1.3   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-live/doc/Deobfuscator/bin deob_index.pl, 1.3, 1.4   Dave Messina
• [Bioperl-guts-l] bioperl-live/doc/Deobfuscator/bin deob_index.pl, 1.4, 1.5   Dave Messina
• [Bioperl-guts-l] bioperl-live/doc/Deobfuscator/bin deob_index.pl, 1.5, 1.6   Dave Messina
• [Bioperl-guts-l] bioperl-live/doc/Deobfuscator/bin deob_index.pl, 1.6, 1.7   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-live/doc/Deobfuscator/cgi-bin deob_detail.cgi, 1.3, 1.4 deob_help.html, 1.2, 1.3 deob_interface.cgi, 1.3, 1.4   Dave Messina
• [Bioperl-guts-l] bioperl-live/doc/Deobfuscator/cgi-bin deob_interface.cgi, 1.4, 1.5   Dave Messina
• [Bioperl-guts-l] bioperl-live/doc/Deobfuscator/lib Deobfuscator.pm, 1.3, 1.4   Dave Messina
• [Bioperl-guts-l] bioperl-live/examples/Bio-DB-GFF load_ucsc.pl, 1.2, 1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/examples/root/lib TestInterface.pm, 1.1, 1.1.8.1 TestObject.pm, 1.1, 1.1.8.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/examples/root/lib/Bio PrimarySeq.pm, 1.6, 1.6.4.1 PrimarySeqI.pm, 1.6, 1.6.4.1 Seq.pm, 1.6, 1.6.4.1 SeqI.pm, 1.5, 1.5.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/examples/tools run_primer3.pl, 1.3, 1.3.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/examples/tools run_primer3.pl, 1.3, 1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/maintenance check_NAME.pl, NONE, 1.2.2.1 README, 1.1, 1.1.8.1 symlink_scripts.PLS, 1.9, 1.9.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF fast_load_gff.PLS, 1.30, 1.31   Scott Cain
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF process_sgd.PLS, 1.2, 1.2.8.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/scripts/taxa local_taxonomydb_query.PLS, 1.2, 1.2.6.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/scripts/utilities mutate.PLS, 1.11, 1.11.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/scripts/utilities mutate.PLS, 1.11, 1.12   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t BioDBGFF.t, 1.41, 1.42 BioGraphics.t, 1.17, 1.18 OMIMparser.t, 1.5, 1.6 Perl.t, 1.8, 1.9 Registry.t, 1.10, 1.11 RestrictionIO.t, 1.9, 1.10 SearchIO.t, 1.97, 1.98 TreeIO.t, 1.33, 1.34 asciitree.t, 1.1, 1.2 chaosxml.t, 1.3, 1.4 cigarstring.t, 1.2, 1.3 primedseq.t, 1.4, 1.5 primer3.t, 1.11, 1.12 singlet.t, 1.5, 1.6 sirna.t, 1.4, 1.5 tinyseq.t, 1.3, 1.4   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t BioDBSeqFeature.t,1.1.2.3,1.1.2.4   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/t BioDBSeqFeature.t,1.2,1.3   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/t BioDBSeqFeature.t,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t BioDBSeqFeature.t,1.4,1.5   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/t BPbl2seq.t, 1.22, NONE BPlite.t, 1.22, NONE BPpsilite.t, 1.11, NONE RestrictionEnzyme.t, 1.7, NONE   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t BPlite.t, 1.22, NONE BPpsilite.t, 1.11, NONE BPbl2seq.t, 1.22, NONE RestrictionEnzyme.t, 1.7, NONE   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t chaosxml.t,1.4,1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t DB.t,1.69,1.70   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t DBCUTG.t,1.22,1.23   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t DBCUTG.t,1.23,1.24   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t embl.t,1.5,1.5.2.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t embl.t,1.5,1.6   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t ESEfinder.t, 1.13.6.3, 1.13.6.4 DBCUTG.t, 1.20.4.2, 1.20.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t ESEfinder.t,1.13.6.2,1.13.6.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t ESEfinder.t,1.14,1.15   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t ESEfinder.t,1.15,1.16   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t ESEfinder.t,1.16,1.17   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t ESEfinder.t,1.17,1.18   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t EUtilities.t, 1.15, 1.16 ESEfinder.t, 1.18, 1.19 Taxonomy.t, 1.14, 1.15 Species.t, 1.14, 1.15 LocationFactory.t, 1.14, 1.15 DBCUTG.t, 1.24, 1.25 DB.t, 1.70, 1.71 phd.t, 1.10, 1.11 NetPhos.t, 1.12, 1.13 Tempfile.t, 1.4, 1.5 RootIO.t, 1.10, 1.11 SeqVersion.t, 1.3, 1.4 Location.t, 1.31, 1.32 SearchIO.t, 1.99, 1.100 RootStorable.t, 1.5, 1.6   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t EUtilities.t,1.12,1.13   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t EUtilities.t,1.13,1.14   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t EUtilities.t,1.14,1.15   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t EUtilities.t,1.16,1.17   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t genbank.t,1.14,1.15   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t LocationFactory.t, 1.12.4.2, 1.12.4.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t LocationFactory.t,1.13,1.14   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Map.t,1.8,1.8.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t Map.t,1.8,1.9   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t NetPhos.t,1.11,1.12   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t OntologyStore.t,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t OntologyStore.t,1.2,1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t phd.t,1.8,1.8.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t phd.t,1.8,1.9   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t phd.t,1.9,1.10   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t RemoteBlast.t,1.15,1.16   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t RestrictionAnalysis.t,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Root-Utilities.t,1.1,NONE   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t RootIO.t, 1.9, 1.10 Tempfile.t, 1.3, 1.4   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t RootIO.t,1.7,1.8   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t RootIO.t,1.8,1.9   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t RootStorable.t, 1.3, 1.3.6.1 RemoteBlast.t, 1.15, 1.15.6.1 BioDBGFF.t, 1.41, 1.41.4.1 BioGraphics.t, 1.17, 1.17.4.1 OMIMparser.t, 1.5, 1.5.8.1 Perl.t, 1.8, 1.8.6.1 Registry.t, 1.10, 1.10.6.1 RestrictionIO.t, 1.9, 1.9.4.1 SearchIO.t, 1.96.4.2, 1.96.4.3 TreeIO.t, 1.32.6.2, 1.32.6.3 asciitree.t, 1.1, 1.1.6.1 chaosxml.t, 1.3, 1.3.4.1 cigarstring.t, 1.2, 1.2.6.1 primedseq.t, 1.4, 1.4.8.1 primer3.t, 1.11, 1.11.4.1 singlet.t, 1.5, 1.5.6.1 sirna.t, 1.4, 1.4.6.1 tinyseq.t, 1.3, 1.3.6.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t RootStorable.t,1.3,1.4   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t RootStorable.t,1.4,1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.100,1.101   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.96.4.3,1.96.4.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.98,1.99   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Seg.t, NONE, 1.1.2.1 Signalp.t, NONE, 1.1.2.1 Tmhmm.t, NONE, 1.1.2.1 Assembly.t, 1.7, 1.7.2.1 Biblio_biofetch.t, 1.11.6.1, 1.11.6.2 BioDBSeqFeature.t, 1.1.2.2, 1.1.2.3 DB.t, 1.67.2.2, 1.67.2.3 DBCUTG.t, 1.20.4.1, 1.20.4.2 ESEfinder.t, 1.13.6.1, 1.13.6.2 EUtilities.t, 1.10.2.1, 1.10.2.2 FeatureIO.t, 1.6, 1.6.4.1 Genpred.t, 1.15, 1.15.8.1 Index.t, 1.44.2.2, 1.44.2.3 Location.t, 1.29.4.1, 1.29.4.2 LocationFactory.t, 1.12.4.1, 1.12.4.2 MapIO.t, 1.4.4.2, 1.4.4.3 Mutator.t, 1.9.14.2, 1.9.14.3 NetPhos.t, 1.8.4.2, 1.8.4.3 OntologyStore.t, 1.1, 1.1.6.1 PhysicalMap.t, 1.2.4.2, 1.2.4.3 RootIO.t, 1.7, 1.7.6.1 SearchIO.t, 1.96.4.1, 1.96.4.2 SeqFeature.t, 1.41.4.2, 1.41.4.3 SeqHound_DB.t, 1.4, 1.4.4.1 SimpleAlign.t, 1.43, 1.43.2.1 SiteMatrix.t, 1.4.6.2, 1.4.6.3 Species.t, 1.11.4.1, 1.11.4.2 StructIO.t, 1.8.4.1, 1.8.4.2 Taxonomy.t, 1.11.4.1, 1.11.4.2 Test.pm, 1.2, 1.2.14.1 TreeIO.t, 1.32.6.1, 1.32.6.2 Unflattener.t, 1.8.4.1, 1.8.4.2 XEMBL_DB.t, 1.5, 1.5.6.1 genbank.t, 1.11.2.2, 1.11.2.3 obo_parser.t, 1.1, 1.1.4.1 rnamotif.t, 1.2, 1.2.4.! 1 swiss.t, 1.3.4.1, 1.3.4.2 Root-Utilities.t, 1.1, NONE tutorial.t, 1.2, NONE   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t SeqHound_DB.t,1.4,1.5   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t SeqVersion.t,1.1,1.1.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t SeqVersion.t,1.1,1.2   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t SeqVersion.t,1.1.4.1,1.1.4.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t SeqVersion.t,1.2,1.3   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t Species.t,1.13,1.14   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t swiss.t,1.3.4.2,1.3.4.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t swiss.t,1.4,1.5   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t Taxonomy.t,1.11.4.2,1.11.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t Taxonomy.t,1.13,1.14   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t XEMBL_DB.t,1.5,1.6   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data bug2120.phd,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data Glimmer2.out, NONE, 1.1.2.1 Glimmer3.detail, NONE, 1.1.2.1 Glimmer3.predict, NONE, 1.1.2.1 GlimmerHMM.out, NONE, 1.1.2.1 GlimmerM.out, NONE, 1.1.2.1 prints.out, NONE, 1.1.2.1 seg.out, NONE, 1.1.2.1 signalp.negative.out, NONE, 1.1.2.1 signalp.positive.out, NONE, 1.1.2.1 test.ptt, NONE, 1.1.2.1 testfile.erpin, NONE, 1.1.2.1 tmhmm.out, NONE, 1.1.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data no_FH.embl,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data no_FH.embl,NONE,1.1.2.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data/seqfeaturedb test.gff3, 1.1.2.2, 1.1.2.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data/seqfeaturedb test.gff3, 1.3, 1.4   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/t/lib/Test Simple.pm, 1.1.2.1, 1.1.2.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/lib/Test/Builder Module.pm, 1.1.2.1, 1.1.2.2 Tester.pm, 1.1.2.1, 1.1.2.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network AUTHORS,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-network Makefile.PL,1.3,1.4   Nathan Haigh
• [Bioperl-guts-l] bioperl-network Makefile.PL,1.4,1.5   Nathan Haigh
• [Bioperl-guts-l] bioperl-network Makefile.PL,1.5,1.6   Nathan Haigh
• [Bioperl-guts-l] bioperl-network Makefile.PL,1.6,1.7   Nathan Haigh
• [Bioperl-guts-l] bioperl-network README,1.2,1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network Edge.pm, 1.5, 1.6 IO.pm, 1.7, 1.8 Interaction.pm, 1.5, 1.6 Node.pm, 1.4, 1.5 ProteinNet.pm, 1.11, 1.12   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network/IO dip_tab.pm, 1.5, 1.6 psi.pm, 1.10, 1.11   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network/IO psi.pm,1.11,1.12   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network/IO psi.pm,1.12,1.13   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network/Bio/Network/IO psi.pm,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network/IO psi.pm,1.7,1.8   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network/IO psi.pm,1.8,1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network/IO psi.pm,1.9,1.10   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network/IO/psi intact.pm, 1.5, 1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-network/t Edge.t,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-network/t Interaction.t,1.2,1.3   Nathan Haigh
• [Bioperl-guts-l] bioperl-network/t Interaction.t,1.3,1.4   Nathan Haigh
• [Bioperl-guts-l] bioperl-run AUTHORS,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-run AUTHORS,1.7,1.8   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-run INSTALL.PROGRAMS,1.4,1.5   Nathan Haigh
• [Bioperl-guts-l] bioperl-run INSTALL.PROGRAMS,1.5,1.6   Nathan Haigh
• [Bioperl-guts-l] bioperl-run Makefile.PL,1.11,1.12   Nathan Haigh
• [Bioperl-guts-l] bioperl-run Makefile.PL,1.12,1.13   Nathan Haigh
• [Bioperl-guts-l] bioperl-run Makefile.PL,1.13,1.14   Nathan Haigh
• [Bioperl-guts-l] bioperl-run Makefile.PL,1.14,1.15   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/Bio/Factory EMBOSS.pm,1.8,1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Installer PAML.pm,1.6,1.7   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Installer TCoffee.pm,1.4,1.5   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Coil.pm,1.12,1.13   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run EMBOSSApplication.pm, 1.25, 1.26   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run EMBOSSApplication.pm, 1.26, 1.27   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run EMBOSSApplication.pm, 1.27, 1.28   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Eponine.pm,1.15,1.16   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Genscan.pm,1.15,1.16   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run PiseJob.pm,1.14,1.15   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run PiseJob.pm,1.15,1.16   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Tmhmm.pm,1.13,1.14   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Tmhmm.pm,1.14,1.15   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Tmhmm.pm,1.15,1.16   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run TribeMCL.pm,1.21,1.22   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Amap.pm, 1.4, 1.5   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Amap.pm, 1.5, 1.6   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Lagan.pm, 1.12, 1.13   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Lagan.pm, 1.13, 1.14   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Lagan.pm, 1.14, 1.15   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Muscle.pm, 1.10, 1.11   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Muscle.pm, 1.9, 1.10   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Codeml.pm, 1.43, 1.44   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Evolver.pm, 1.11, 1.12   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Evolver.pm, 1.12, 1.13   Albert Vilella
• [Bioperl-guts-l] bioperl-run/t Amap.t, 1.1, 1.2 AnalysisFactory_soap.t, 1.1, 1.2 Analysis_soap.t, 1.5, 1.6 Clustalw.t, 1.31, 1.32   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/t Amap.t,1.2,1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t Amap.t,1.3,1.4   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/t Amap.t,1.4,1.5   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/t Analysis_soap.t,1.3,1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/t Analysis_soap.t,1.4,1.5   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/t Clustalw.t,1.32,1.33   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t Consense.t,1.4,1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t EMBOSS.t,1.13,1.14   Brian Osborne
• [Bioperl-guts-l] bioperl-run/t EMBOSS.t,1.14,1.15   Brian Osborne
• [Bioperl-guts-l] bioperl-run/t EMBOSS.t,1.15,1.16   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t Genewise.t,1.13,1.14   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t Genscan.t,1.6,1.7   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/t Muscle.t,1.5,1.6   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t Pise.t,1.7,1.8   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/t Tmhmm.t,1.4,1.5   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/t/lib - New directory   Nathan Haigh
• [Bioperl-guts-l] bioperl-run/t/lib/Test - New directory   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/t/lib/Test Builder.pm, NONE, 1.1 More.pm, NONE, 1.1 Simple.pm, NONE, 1.1 Tutorial.pod, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/t/lib/Test/Builder - New directory   Christopher John Fields
• [Bioperl-guts-l] bioperl-run/t/lib/Test/Builder Module.pm, NONE, 1.1 Tester.pm, NONE, 1.1   Christopher John Fields

Last message date: Tue Oct 31 17:26:33 EST 2006
Archived on: Tue Oct 31 17:26:41 EST 2006

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