January 2006 Archives by thread
Starting: Sun Jan 1 23:13:37 EDT 2006
Ending: Mon Jan 30 11:53:56 EDT 2006
Messages: 126
- [Bioperl-guts-l] bioperl-live/Bio/Graph IO.pm,1.8,1.9
Brian Osborne
- [Bioperl-guts-l] bioperl-live/Bio/Graph/IO psi_xml.pm,1.6,1.7
Brian Osborne
- [Bioperl-guts-l] bioperl-live/Bio/Graph ProteinGraph.pm,1.27,1.28
Brian Osborne
- [Bioperl-guts-l] bioperl-live/Bio SearchIO.pm,1.34,1.35
Brian Osborne
- [Bioperl-guts-l] bioperl-live/Bio PrimarySeq.pm,1.86,1.87
Jason Stajich
- [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Generic.pm,1.94,1.95
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/SeqFeature TypedSeqFeatureI.pm,
1.3, 1.4
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/DNA ESEfinder.pm,
1.7, 1.8
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein
Scansite.pm, 1.11, 1.12
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein Domcut.pm,
1.10, 1.11
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein Sopma.pm,
1.8, 1.9
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein
Scansite.pm, 1.12, 1.13
Torsten Seemann
- [Bioperl-guts-l]
bioperl-live/Bio/Tools/Analysis/Protein HNN.pm, 1.8, 1.9
Torsten Seemann
- [Bioperl-guts-l]
bioperl-live/Bio/Tools/Analysis/Protein ELM.pm, 1.8, 1.9
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis
SimpleAnalysisBase.pm, 1.7, 1.8
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/Tools IUPAC.pm,1.24,1.25
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/Tools/HMMER Results.pm,1.24,1.25
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/Tools AnalysisResult.pm, 1.14,
1.15
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/DB GenBank.pm,1.53,1.54
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/DB NCBIHelper.pm,1.40,1.41
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/DB WebDBSeqI.pm,1.46,1.47
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Annotated.pm, 1.28,
1.29
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/SeqFeature/Gene Promoter.pm, 1.5,
1.6
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/SeqFeature TypedSeqFeatureI.pm,
1.4, 1.5
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/Tools SeqStats.pm,1.25,1.26
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/t SeqStats.t,1.12,1.13
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/Root HTTPget.pm,1.8,1.9
Brian Osborne
- [Bioperl-guts-l] bioperl-live/t SeqVersion.t, NONE, 1.1 Matrix.t,
1.6, 1.7 entrezgene.t, 1.3, 1.4 protgraph.t, 1.15, 1.16
Brian Osborne
- [Bioperl-guts-l] bioperl-live/Bio/Graph/IO psi_xml.pm,1.7,1.8
Brian Osborne
- [Bioperl-guts-l] bioperl-live/Bio/DB/SeqVersion - New directory
Brian Osborne
- [Bioperl-guts-l] bioperl-live/Bio/DB SeqVersion.pm,NONE,1.1
Brian Osborne
- [Bioperl-guts-l] bioperl-live/Bio Perl.pm,1.24,1.25
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio PrimarySeq.pm,1.87,1.88
Torsten Seemann
- [Bioperl-guts-l] bioperl-live INSTALL,1.40,1.41
Brian Osborne
- [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Molphy ProtML.pm,
1.11, 1.12
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio IdentifiableI.pm,1.7,1.8
Brian Osborne
- [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Seg.pm,1.12,1.13
Torsten Seemann
- [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Mdust.pm,1.6,1.7
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/scripts/utilities mutate.PLS,1.8,1.9
Brian Osborne
- [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Coil.pm,1.6,1.7
Torsten Seemann
- [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gff.pm,1.35,1.36
Scott Cain
- [Bioperl-guts-l] Can BPLite parse HTML formatted BLAST output
Richard Francis
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis
SimpleAnalysisBase.pm, 1.8, 1.9
Brian Osborne
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein Sopma.pm,
1.9, 1.10
Brian Osborne
- [Bioperl-guts-l] bioperl-live/t protgraph.t,1.16,1.17
Richard Adams
- [Bioperl-guts-l] bioperl-live/Bio/Graph/IO psi_xml.pm,1.8,1.9
Richard Adams
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.32,1.33
Albert Vilella
- [Bioperl-guts-l] bioperl-live/Bio/Graph/IO psi_xml.pm,1.9,1.10
Brian Osborne
- [Bioperl-guts-l] bioperl-live/t protgraph.t,1.17,1.18
Brian Osborne
- [Bioperl-guts-l] bioperl-live/Bio/DB GFF.pm,1.136,1.137
Jason Stajich
- [Bioperl-guts-l] bioperl-live/Bio/DB GFF.pm,1.132.2.2,1.132.2.3
Jason Stajich
- [Bioperl-guts-l] [Bug 1928] New: incomplete example in
Bio::Tools::Run::Phylo::Phylip::DrawTree
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l]
bioperl-run/Bio/Tools/Run/Phylo/Phylip DrawTree.pm, 1.9, 1.10
Heikki Lehvaslaiho
- [Bioperl-guts-l]
bioperl-live INSTALL, 1.41, 1.42 Makefile.PL, 1.85, 1.86
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/Bio/LiveSeq/IO Loader.pm, 1.18,
1.19 README, 1.3, 1.4 SRS.pm, 1.11, NONE
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/t alignUtilities.t,NONE,1.1
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live AUTHORS,1.44,1.45
Brian Osborne
- [Bioperl-guts-l] bioperl-live/Bio/Search/HSP GenericHSP.pm, 1.65,
1.66
Jason Stajich
- [Bioperl-guts-l] bioperl-live/scripts/utilities remote_blast.PLS,
1.2, 1.3
Brian Osborne
- [Bioperl-guts-l] bioperl-live/scripts/utilities remote_blast.PLS,
1.3, 1.4
Brian Osborne
- [Bioperl-guts-l] bioperl-live/t Location.t,1.28,1.29
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.33,1.34
Albert Vilella
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.34,1.35
Albert Vilella
- [Bioperl-guts-l]
bioperl-live/examples/tools standaloneblast.pl, 1.4, 1.5
Brian Osborne
- [Bioperl-guts-l] bioperl-live/maintenance modules.pl,1.19,1.20
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.35,1.36
Albert Vilella
- [Bioperl-guts-l] [Bug 1930] New:
Bio::Align::Utilities::bootstrap_replicates() does not work
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] [Bug 1931] New: Bio::Annotation::AnnotationFactory
acts weird
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] bioperl-live/Bio/Location Fuzzy.pm,1.29,1.30
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/Bio/Annotation AnnotationFactory.pm,
1.2, 1.3
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/t Annotation.t,1.14,1.15
Heikki Lehvaslaiho
- [Bioperl-guts-l] [Bug 1930]
Bio::Align::Utilities::bootstrap_replicates() does not work
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] bioperl-live/Bio/Taxonomy Taxon.pm, 1.1,
1.2 Tree.pm, 1.1, 1.2
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/t TaxonTree.t,NONE,1.1
Heikki Lehvaslaiho
- [Bioperl-guts-l] [Bug 1932] New: Bulk load GFF and GFF3 problems
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] [Bug 1932] Bulk load GFF and GFF3 problems
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] [Bug 1932] Bulk load GFF and GFF3 problems
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] [Bug 1932] Bulk load GFF and GFF3 problems
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF bulk_load_gff.PLS,
1.35, 1.36 fast_load_gff.PLS, 1.24, 1.25
Lincoln Stein
- [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF fast_load_gff.PLS,
1.25, 1.26
Lincoln Stein
- [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF bulk_load_gff.PLS,
1.36, 1.37 fast_load_gff.PLS, 1.26, 1.27
Lincoln Stein
- [Bioperl-guts-l] bioperl-live/Bio/Tools Primer3.pm,1.16,1.17
Brian Osborne
- [Bioperl-guts-l]
bioperl-db/scripts/biosql load_seqdatabase.pl, 1.23, 1.24
Hilmar Lapp
- [Bioperl-guts-l]
bioperl-db/scripts/biosql merge-unique-ann.pl, 1.1, 1.2
Hilmar Lapp
- [Bioperl-guts-l] bioperl-db/Bio/DB SimpleDBContext.pm,1.5,1.6
Hilmar Lapp
- [Bioperl-guts-l] bioperl-db/Bio/DB/BioSQL BaseDriver.pm, 1.27,
1.28 CommentAdaptor.pm, 1.12, 1.13 DBLinkAdaptor.pm, 1.14,
1.15 ReferenceAdaptor.pm, 1.22, 1.23 SimpleValueAdaptor.pm,
1.11, 1.12 TermAdaptor.pm, 1.10, 1.11
Hilmar Lapp
- [Bioperl-guts-l] bioperl-live/Bio/Seq BaseSeqProcessor.pm,1.4,1.5
Hilmar Lapp
- [Bioperl-guts-l] bioperl-live/Bio/SeqIO chaos.pm,1.9,1.10
Hilmar Lapp
- [Bioperl-guts-l] bioperl-live/Bio/Annotation OntologyTerm.pm, 1.10,
1.11
Hilmar Lapp
- [Bioperl-guts-l] bioperl-live/t Annotation.t,1.15,1.16
Hilmar Lapp
- [Bioperl-guts-l]
bioperl-live/scripts/utilities search2gff.PLS, 1.13, 1.14
Hilmar Lapp
- [Bioperl-guts-l] [Bug 1934] New: RemoteBlast.pm and SearchIO
problems (changes at NCBI)
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] [Bug 1935] New: RemoteBlast.pm doesn't save XML,
possible parsing problems
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] [Bug 1934] RemoteBlast.pm and SearchIO problems
(changes at NCBI)
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] [Bug 1935] RemoteBlast.pm doesn't save XML,
possible parsing problems
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] [Bug 1934] RemoteBlast.pm and SearchIO problems
(changes at NCBI)
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] [Bug 1935] RemoteBlast.pm doesn't save XML,
possible parsing problems
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] bioperl-live/t PhysicalMap.t,NONE,1.1
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live Makefile.PL,1.86,1.87
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/t Compatible.t,1.1,1.2
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/Bio/Tools SeqStats.pm,1.26,1.27
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/t PrimarySeq.t,1.22,1.23
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Primer3.pm,1.14,1.15
Jason Stajich
- [Bioperl-guts-l] [Bug 1934] RemoteBlast.pm and SearchIO problems
(changes at NCBI)
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] [Bug 1934] RemoteBlast.pm and SearchIO problems
(changes at NCBI)
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] [Bug 1935] RemoteBlast.pm doesn't save XML,
possible parsing problems
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] [Bug 1935] RemoteBlast.pm doesn't save XML,
possible parsing problems
bugzilla-daemon at portal.open-bio.org
- [Bioperl-guts-l] bioperl-live/Bio/SeqIO phd.pm,1.19,1.20
Chad Matsalla
- [Bioperl-guts-l] bioperl-live/t phd.t,1.7,1.8
Chad Matsalla
- [Bioperl-guts-l] testing
Jason Stajich
- [Bioperl-guts-l] new mailing list server
Jason Stajich
- [Bioperl-guts-l] bioperl-live/Bio/Root Utilities.pm,1.26,1.27
Steve Chervitz
- [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm,1.109,1.110
Scott Cain
- [Bioperl-guts-l] bioperl-live/Bio/Seq Meta.pm,1.8,1.9
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.36,1.37
Albert Vilella
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/PAML Result.pm, 1.18, 1.19
Albert Vilella
- [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/PAML ModelResult.pm, 1.3, 1.4
Albert Vilella
- [Bioperl-guts-l] bioperl-pipeline/Bio/Pipeline/Runnable Hmmpfam.pm, 1.8, 1.9
olivier at pub.open-bio.org
- [Bioperl-guts-l] bioperl-live/Bio SeqUtils.pm,1.20,1.21
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/t SeqUtils.t,1.13,1.14
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/t protgraph.t,1.18,1.19
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/Bio/Tools Gel.pm,1.7,1.8
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/t Gel.t,NONE,1.1
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/Bio SeqUtils.pm,1.21,1.22
Heikki Lehvaslaiho
- [Bioperl-guts-l] bioperl-live/Bio/Tools WebBlat.pm,1.2,1.3
Brian Osborne
Last message date:
Mon Jan 30 11:53:56 EDT 2006
Archived on: Mon Jan 30 12:46:24 EDT 2006
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