January 2006 Archives by thread

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Starting: Sun Jan 1 23:13:37 EDT 2006
Ending: Mon Jan 30 11:53:56 EDT 2006
Messages: 126

• [Bioperl-guts-l] bioperl-live/Bio/Graph IO.pm,1.8,1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Graph/IO psi_xml.pm,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Graph ProteinGraph.pm,1.27,1.28   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio SearchIO.pm,1.34,1.35   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio PrimarySeq.pm,1.86,1.87   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Generic.pm,1.94,1.95   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature TypedSeqFeatureI.pm, 1.3, 1.4   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/DNA ESEfinder.pm, 1.7, 1.8   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein Scansite.pm, 1.11, 1.12   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein Domcut.pm, 1.10, 1.11   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein Sopma.pm, 1.8, 1.9   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein Scansite.pm, 1.12, 1.13   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein HNN.pm, 1.8, 1.9   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein ELM.pm, 1.8, 1.9   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis SimpleAnalysisBase.pm, 1.7, 1.8   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools IUPAC.pm,1.24,1.25   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/HMMER Results.pm,1.24,1.25   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools AnalysisResult.pm, 1.14, 1.15   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB GenBank.pm,1.53,1.54   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB NCBIHelper.pm,1.40,1.41   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/DB WebDBSeqI.pm,1.46,1.47   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Annotated.pm, 1.28, 1.29   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature/Gene Promoter.pm, 1.5, 1.6   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature TypedSeqFeatureI.pm, 1.4, 1.5   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools SeqStats.pm,1.25,1.26   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t SeqStats.t,1.12,1.13   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Root HTTPget.pm,1.8,1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t SeqVersion.t, NONE, 1.1 Matrix.t, 1.6, 1.7 entrezgene.t, 1.3, 1.4 protgraph.t, 1.15, 1.16   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Graph/IO psi_xml.pm,1.7,1.8   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqVersion - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqVersion.pm,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio Perl.pm,1.24,1.25   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio PrimarySeq.pm,1.87,1.88   Torsten Seemann
• [Bioperl-guts-l] bioperl-live INSTALL,1.40,1.41   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Molphy ProtML.pm, 1.11, 1.12   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio IdentifiableI.pm,1.7,1.8   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Seg.pm,1.12,1.13   Torsten Seemann
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Mdust.pm,1.6,1.7   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/scripts/utilities mutate.PLS,1.8,1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Coil.pm,1.6,1.7   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gff.pm,1.35,1.36   Scott Cain
• [Bioperl-guts-l] Can BPLite parse HTML formatted BLAST output   Richard Francis
  • [Bioperl-guts-l] Can BPLite parse HTML formatted BLAST output   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis SimpleAnalysisBase.pm, 1.8, 1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein Sopma.pm, 1.9, 1.10   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t protgraph.t,1.16,1.17   Richard Adams
• [Bioperl-guts-l] bioperl-live/Bio/Graph/IO psi_xml.pm,1.8,1.9   Richard Adams
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.32,1.33   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Graph/IO psi_xml.pm,1.9,1.10   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t protgraph.t,1.17,1.18   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB GFF.pm,1.136,1.137   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB GFF.pm,1.132.2.2,1.132.2.3   Jason Stajich
• [Bioperl-guts-l] [Bug 1928] New: incomplete example in Bio::Tools::Run::Phylo::Phylip::DrawTree   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phylip DrawTree.pm, 1.9, 1.10   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live INSTALL, 1.41, 1.42 Makefile.PL, 1.85, 1.86   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/LiveSeq/IO Loader.pm, 1.18, 1.19 README, 1.3, 1.4 SRS.pm, 1.11, NONE   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t alignUtilities.t,NONE,1.1   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live AUTHORS,1.44,1.45   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP GenericHSP.pm, 1.65, 1.66   Jason Stajich
• [Bioperl-guts-l] bioperl-live/scripts/utilities remote_blast.PLS, 1.2, 1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-live/scripts/utilities remote_blast.PLS, 1.3, 1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Location.t,1.28,1.29   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.33,1.34   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.34,1.35   Albert Vilella
• [Bioperl-guts-l] bioperl-live/examples/tools standaloneblast.pl, 1.4, 1.5   Brian Osborne
• [Bioperl-guts-l] bioperl-live/maintenance modules.pl,1.19,1.20   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.35,1.36   Albert Vilella
• [Bioperl-guts-l] [Bug 1930] New: Bio::Align::Utilities::bootstrap_replicates() does not work   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1931] New: Bio::Annotation::AnnotationFactory acts weird   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Location Fuzzy.pm,1.29,1.30   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Annotation AnnotationFactory.pm, 1.2, 1.3   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t Annotation.t,1.14,1.15   Heikki Lehvaslaiho
• [Bioperl-guts-l] [Bug 1930] Bio::Align::Utilities::bootstrap_replicates() does not work   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Taxonomy Taxon.pm, 1.1, 1.2 Tree.pm, 1.1, 1.2   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t TaxonTree.t,NONE,1.1   Heikki Lehvaslaiho
• [Bioperl-guts-l] [Bug 1932] New: Bulk load GFF and GFF3 problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1932] Bulk load GFF and GFF3 problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1932] Bulk load GFF and GFF3 problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1932] Bulk load GFF and GFF3 problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF bulk_load_gff.PLS, 1.35, 1.36 fast_load_gff.PLS, 1.24, 1.25   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF fast_load_gff.PLS, 1.25, 1.26   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF bulk_load_gff.PLS, 1.36, 1.37 fast_load_gff.PLS, 1.26, 1.27   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Tools Primer3.pm,1.16,1.17   Brian Osborne
• [Bioperl-guts-l] bioperl-db/scripts/biosql load_seqdatabase.pl, 1.23, 1.24   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/scripts/biosql merge-unique-ann.pl, 1.1, 1.2   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/Bio/DB SimpleDBContext.pm,1.5,1.6   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/Bio/DB/BioSQL BaseDriver.pm, 1.27, 1.28 CommentAdaptor.pm, 1.12, 1.13 DBLinkAdaptor.pm, 1.14, 1.15 ReferenceAdaptor.pm, 1.22, 1.23 SimpleValueAdaptor.pm, 1.11, 1.12 TermAdaptor.pm, 1.10, 1.11   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/Bio/Seq BaseSeqProcessor.pm,1.4,1.5   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO chaos.pm,1.9,1.10   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/Bio/Annotation OntologyTerm.pm, 1.10, 1.11   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/t Annotation.t,1.15,1.16   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/scripts/utilities search2gff.PLS, 1.13, 1.14   Hilmar Lapp
• [Bioperl-guts-l] [Bug 1934] New: RemoteBlast.pm and SearchIO problems (changes at NCBI)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1935] New: RemoteBlast.pm doesn't save XML, possible parsing problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1934] RemoteBlast.pm and SearchIO problems (changes at NCBI)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1935] RemoteBlast.pm doesn't save XML, possible parsing problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1934] RemoteBlast.pm and SearchIO problems (changes at NCBI)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1935] RemoteBlast.pm doesn't save XML, possible parsing problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t PhysicalMap.t,NONE,1.1   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.86,1.87   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t Compatible.t,1.1,1.2   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools SeqStats.pm,1.26,1.27   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t PrimarySeq.t,1.22,1.23   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Primer3.pm,1.14,1.15   Jason Stajich
• [Bioperl-guts-l] [Bug 1934] RemoteBlast.pm and SearchIO problems (changes at NCBI)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1934] RemoteBlast.pm and SearchIO problems (changes at NCBI)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1935] RemoteBlast.pm doesn't save XML, possible parsing problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1935] RemoteBlast.pm doesn't save XML, possible parsing problems   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO phd.pm,1.19,1.20   Chad Matsalla
• [Bioperl-guts-l] bioperl-live/t phd.t,1.7,1.8   Chad Matsalla
• [Bioperl-guts-l] testing   Jason Stajich
• [Bioperl-guts-l] new mailing list server   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Root Utilities.pm,1.26,1.27   Steve Chervitz
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm,1.109,1.110   Scott Cain
• [Bioperl-guts-l] bioperl-live/Bio/Seq Meta.pm,1.8,1.9   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.36,1.37   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/PAML Result.pm, 1.18, 1.19   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/PAML ModelResult.pm, 1.3, 1.4   Albert Vilella
• [Bioperl-guts-l] bioperl-pipeline/Bio/Pipeline/Runnable Hmmpfam.pm, 1.8, 1.9   olivier at pub.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio SeqUtils.pm,1.20,1.21   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t SeqUtils.t,1.13,1.14   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t protgraph.t,1.18,1.19   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools Gel.pm,1.7,1.8   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t Gel.t,NONE,1.1   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio SeqUtils.pm,1.21,1.22   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools WebBlat.pm,1.2,1.3   Brian Osborne

Last message date: Mon Jan 30 11:53:56 EDT 2006
Archived on: Mon Jan 30 12:46:24 EDT 2006

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