August 2006 Archives by date

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Starting: Tue Aug 1 07:14:08 EDT 2006
Ending: Thu Aug 31 18:20:04 EDT 2006
Messages: 368

• [Bioperl-guts-l] bioperl-live/t/data/taxdump names.dmp, 1.1, 1.2 nodes.dmp, 1.1, 1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search SearchUtils.pm,1.15,1.16   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.93,1.94   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data tricky.wublast,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] Problem in Bio-Perl parser , while running on XML-RPC environment   deep shingan
• [Bioperl-guts-l] [Bug 2056] EMBL Parser needs to work with new release 87 format (Patch is attached)   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.94,1.95   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2056] EMBL Parser needs to work with new release 87 format (Patch is attached)   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Search SearchUtils.pm,1.16,1.17   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2056] EMBL Parser needs to work with new release 87 format (Patch is attached)   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2056] EMBL Parser needs to work with new release 87 format (Patch is attached)   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2056] EMBL Parser needs to work with new release 87 format (Patch is attached)   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.90,1.91   Christopher John Fields
• [Bioperl-guts-l] [Bug 2060] New: load_ucsc.pl fails on UCSC's hg17 "refFlat.txt.gz" file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2056] EMBL Parser needs to work with new release 87 format (Patch is attached)   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2060] load_ucsc.pl fails on UCSC's hg17 "refFlat.txt.gz" file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2060] load_ucsc.pl fails on UCSC's hg17 "refFlat.txt.gz" file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t PAML.t,1.20,1.21   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.44,1.45   Christopher John Fields
• [Bioperl-guts-l] [Bug 2054] Bio::Tools::Phylo::PAML.pm can not obtain omega(w) if model is M0.   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2054] Bio::Tools::Phylo::PAML.pm can not obtain omega(w) if model is M0.   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2055] Bio::Tools::Phylo::PAML.pm cannot parse dN/dS for branch site/clade models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2055] Bio::Tools::Phylo::PAML.pm cannot parse dN/dS for branch site/clade models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2060] load_ucsc.pl fails on UCSC's hg17 "refFlat.txt.gz" file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t/data M0.mlc, NONE, 1.1 branchSite.mlc, NONE, 1.1 singleNSsite.mlc, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] [Bug 2055] Bio::Tools::Phylo::PAML.pm cannot parse dN/dS for branch site/clade models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2061] New: Bio::Species, Bio::Taxonomy::Node overhaul   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2061] Bio::Species, Bio::Taxonomy::Node overhaul   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t PAML.t,1.21,1.22   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.45,1.46   Christopher John Fields
• [Bioperl-guts-l] [Bug 1883] Bio::Tools::Phylo::PAML::PAML _parse_NSsitesBatch for only 1 model in mlc   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2055] Bio::Tools::Phylo::PAML.pm cannot parse dN/dS for branch site/clade models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t PAML.t,1.22,1.23   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.46,1.47   Christopher John Fields
• [Bioperl-guts-l] [Bug 2055] Bio::Tools::Phylo::PAML.pm cannot parse dN/dS for branch site/clade models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2061] Bio::Species, Bio::Taxonomy::Node overhaul   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2062] New: No space in tag values of genbank file when they include a line break   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2061] Bio::Species, Bio::Taxonomy::Node overhaul   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2062] No space in tag values of genbank file when they include a line break   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2061] Bio::Species, Bio::Taxonomy::Node overhaul   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2061] Bio::Species, Bio::Taxonomy::Node overhaul   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2061] Bio::Species, Bio::Taxonomy::Node overhaul   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2061] Bio::Species, Bio::Taxonomy::Node overhaul   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t genbank.t,1.8,1.9   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t rnamotif.t,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools ERPIN.pm, 1.3, 1.4 RNAMotif.pm, 1.8, 1.9   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t rnamotif.t,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools ERPIN.pm, 1.4, 1.5 RNAMotif.pm, 1.9, 1.10   Christopher John Fields
• [Bioperl-guts-l] [Bug 2063] New: Bio::DB::Fasta fails to index files over 4GB   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2063] Bio::DB::Fasta fails to index files over 4GB   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2064] New: Bio::Assembly::Contig::strand() method misbehaves   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2064] Bio::Assembly::Contig::strand() method misbehaves   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2064] Bio::Assembly::Contig::strand() method misbehaves   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Assembly Contig.pm,1.10,1.11   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Assembly.t,1.5,1.6   Christopher John Fields
• [Bioperl-guts-l] [Bug 2064] Bio::Assembly::Contig::strand() method misbehaves   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2065] New: Exception while parsing big blast result files   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities efetch.pm, 1.7, 1.8 einfo.pm, 1.7, 1.8 elink.pm, 1.21, 1.22 esearch.pm, 1.10, 1.11 esummary.pm, 1.7, 1.8   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB EUtilities.pm,1.21,1.22   Christopher John Fields
• [Bioperl-guts-l] [Bug 2065] Exception while parsing big blast result files   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/DB EUtilities.pm,1.22,1.23   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities ElinkData.pm, 1.11, 1.12 elink.pm, 1.22, 1.23   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB EUtilities.pm,1.23,1.24   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB/EUtilities elink.pm, 1.23, 1.24   Christopher John Fields
• [Bioperl-guts-l] [Bug 2069] New: Bio::Tools:pSW stop codon bug   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2070] New: mumsa wrapper   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO FastHitEventBuilder.pm, 1.12, 1.13   Christopher John Fields
• [Bioperl-guts-l] [Bug 2071] New: Bio::FeatureIO::gff does not correctly write gff3 Target strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2071] Bio::FeatureIO::gff does not correctly write gff3 Target strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2073] New: sreformat.pl requires the -i flag to run   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2073] sreformat.pl requires the -i flag to run   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/scripts/utilities bp_sreformat.PLS, 1.12, 1.13   Brian Osborne
• [Bioperl-guts-l] [Bug 2073] sreformat.pl requires the -i flag to run   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2061] Bio::Species, Bio::Taxonomy::Node overhaul   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t Tree.t,1.12,1.13   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB Taxonomy.pm,1.10,1.11   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Taxonomy Tree.pm, 1.2, 1.3 Taxon.pm, 1.4, 1.5 Node.pm, 1.16, 1.17 FactoryI.pm, 1.3, 1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.47,1.48   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tree TreeI.pm, 1.16, 1.17 TreeFunctionsI.pm, 1.26, 1.27 Tree.pm, 1.20, 1.21 Node.pm, 1.48, 1.49   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t genbank.t, 1.9, 1.10 Taxonomy.t, 1.10, 1.11 TaxonTree.t, 1.4, 1.5 Species.t, 1.10, 1.11 SearchIO.t, 1.95, 1.96 Node.t, 1.6, 1.7 Index.t, 1.42, 1.43 BioFetch_DB.t, 1.12, 1.13   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm, 1.138, 1.139 embl.pm, 1.91, 1.92 bsml_sax.pm, 1.3, 1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio Taxon.pm, NONE, 1.1 Taxonomy.pm, 1.7, 1.8 Species.pm, 1.34, 1.35   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/scripts/taxa taxonomy2tree.PLS, 1.3, 1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy list.pm, NONE, 1.1 flatfile.pm, 1.14, 1.15 entrez.pm, 1.17, 1.18   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live DEPRECATED,1.8,1.9   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2061] Bio::Species, Bio::Taxonomy::Node overhaul   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2073] sreformat.pl requires the -i flag to run   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2073] sreformat.pl requires the -i flag to run   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] New: bioperl-ext: make test fails   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2073] sreformat.pl requires the -i flag to run   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result GenericResult.pm, 1.22, 1.22.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature SimilarityPair.pm, 1.30, 1.30.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit GenericHit.pm, 1.37, 1.37.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Iteration GenericIteration.pm, 1.6, 1.6.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP GenericHSP.pm, 1.68, 1.68.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO SearchResultEventBuilder.pm, 1.41, 1.41.2.1 IteratedSearchResultEventBuilder.pm, 1.10, 1.10.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF Feature.pm,1.74,1.75   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph generic.pm, 1.39, 1.40 segments.pm, 1.43, 1.44   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio SeqUtils.pm,1.33,1.34   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools CodonTable.pm,1.36,1.37   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools tRNAscanSE.pm,1.4,1.5   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t SeqUtils.t,1.19,1.20   Christopher John Fields
• [Bioperl-guts-l] bioperl-live AUTHORS,1.48,1.49   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-live/t Index.t,1.43,1.44   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t Assembly.t,1.6,1.7   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools IUPAC.pm,1.28,1.29   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t CodonTable.t,1.19,1.20   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t AlignIO.t,1.62,1.63   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Symbol ProteinAlphabet.pm, 1.6, 1.7   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Alphabet.t,1.3,1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t DB.t,1.64,1.65   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Graph/IO psi_xml.pm,1.12,1.13   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t protgraph.t,1.21,1.22   Christopher John Fields
• [Bioperl-guts-l] bioperl-pipeline/Bio/Pipeline/SQL AnalysisAdaptor.pm, 1.32, 1.33   olivier at dev.open-bio.org
• [Bioperl-guts-l] [Bug 2077] New: bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2078] New: informative codons method for kaks -- Bio/Align/DNAStatistics.pm   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2073] sreformat.pl requires the -i flag to run   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2078] informative codons method for kaks -- Bio/Align/DNAStatistics.pm   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/scripts/utilities bp_sreformat.PLS, 1.13, 1.14   Christopher John Fields
• [Bioperl-guts-l] [Bug 2073] sreformat.pl requires the -i flag to run   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2080] New: Bio::Tools::Phylo::PAML fails to parse omega when no space between two estimates   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2080] Bio::Tools::Phylo::PAML fails to parse omega when no space between two estimates   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2080] Bio::Tools::Phylo::PAML fails to parse omega when no space between two estimates   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2080] Bio::Tools::Phylo::PAML fails to parse omega when no space between two estimates   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.48,1.49   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t PAML.t,1.23,1.24   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data branchSite.mlc,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] [Bug 2080] Bio::Tools::Phylo::PAML fails to parse omega when no space between two estimates   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2048] Bio::Assembly::Scaffold::get_contig_ids doesn't work in scalar context   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2049] using Bio::Index::Fasta, fetching a nonexistent seq causes a crash   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2081] New: Error in length_aln method when parsing BLAST report with Bio::SearchIO   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run GenericParameters.pm, 1.5, 1.6   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result GenericResult.pm, 1.22, 1.23   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search GenericStatistics.pm, 1.5, 1.6   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data roa1_v2.dat,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t embl.t,1.4,1.5   Christopher John Fields
• [Bioperl-guts-l] [Bug 2056] EMBL Parser needs to work with new release 87 format (Patch is attached)   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2081] Error in length_aln method when parsing BLAST report with Bio::SearchIO   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2081] Error in length_aln method when parsing BLAST report with Bio::SearchIO   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2081] Error in length_aln method when parsing BLAST report with Bio::SearchIO   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2081] Error in length_aln method when parsing BLAST report with Bio::SearchIO   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1975] request to add "-validate" option to Bio::Species->new()   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t SimpleAlign.t,1.42,1.43   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.107,1.108   Christopher John Fields
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2075] rpsblast problems   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2082] New: TreeFunctionsI::contract_linear_paths causes exception if nothing to remove   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2082] TreeFunctionsI::contract_linear_paths causes exception if nothing to remove   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tree TreeFunctionsI.pm, 1.27, 1.28   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2082] TreeFunctionsI::contract_linear_paths causes exception if nothing to remove   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2075] rpsblast parse problem w/r frame and strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t DB.t,1.65,1.66   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t DB.t,1.66,1.67   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB WebDBSeqI.pm,1.56,1.57   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t genbank.t,1.10,1.11   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.139,1.140   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB NCBIHelper.pm,1.53,1.54   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Query GenBank.pm,1.17,1.18   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment DBA.pm, 1.14, 1.15   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio SeqFeatureI.pm,1.66,1.67   Christopher John Fields
• [Bioperl-guts-l] [Bug 1780] spliced_seq   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1821] Bio::Align::DNAStatistics cannot calculate correct the number of synonymouse site of sequece in alignment   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1829] -ve xyplot.pm - gff data must be in order   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tools RNAMotif.pm,1.10,1.11   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data testaln2.fasta,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.94,1.95   Mauricio Herrera Cuadra
• [Bioperl-guts-l] [Bug 992] Fuzzy location object problem (double location)   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.95,1.96   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-live AUTHORS,1.49,1.50   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-live AUTHORS,1.50,1.51   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-live/Bio AlignIO.pm, 1.46, 1.47 AnnotationCollectionI.pm, 1.17, 1.18 AnnotationI.pm, 1.10, 1.11 DasI.pm, 1.18, 1.19 IdentifiableI.pm, 1.11, 1.12 LocatableSeq.pm, 1.39, 1.40 Perl.pm, 1.26, 1.27 PrimarySeq.pm, 1.95, 1.96 PrimarySeqI.pm, 1.65, 1.66 SearchDist.pm, 1.20, 1.21 SeqFeatureI.pm, 1.67, 1.68 SeqI.pm, 1.29, 1.30 SeqIO.pm, 1.92, 1.93 SimpleAlign.pm, 1.108, 1.109   Mauricio Herrera Cuadra
• [Bioperl-guts-l] [Bug 2075] rpsblast parse problem w/r frame and strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Root RootI.pm,1.69,1.70   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/OntologyIO obo.pm,1.8,1.9   Christopher John Fields
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.96,1.97   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result GenericResult.pm, 1.23, 1.24   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data hmmpfam_fake.out,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t hmmer_pull.t,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit HmmpfamHit.pm, NONE, 1.1 PullHitI.pm, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO hmmer_pull.pm,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result HmmpfamResult.pm, NONE, 1.1 PullResultI.pm, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP HmmpfamHSP.pm, NONE, 1.1 PullHSPI.pm, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio PullParserI.pm,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live AUTHORS,1.49,1.49.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Root RootI.pm,1.69,1.69.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/OntologyIO obo.pm,1.8,1.8.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio PullParserI.pm, NONE, 1.1.2.1 AlignIO.pm, 1.46, 1.46.4.1 AnnotationCollectionI.pm, 1.17, 1.17.4.1 AnnotationI.pm, 1.10, 1.10.4.1 DasI.pm, 1.18, 1.18.4.1 IdentifiableI.pm, 1.11, 1.11.4.1 LocatableSeq.pm, 1.39, 1.39.4.1 Perl.pm, 1.26, 1.26.4.1 PrimarySeq.pm, 1.95, 1.95.4.1 PrimarySeqI.pm, 1.65, 1.65.4.1 SearchDist.pm, 1.20, 1.20.4.1 SeqFeatureI.pm, 1.66, 1.66.4.1 SeqI.pm, 1.29, 1.29.4.1 SeqIO.pm, 1.92, 1.92.4.1 SimpleAlign.pm, 1.108, 1.108.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Expression ProbeI.pm, NONE, 1.8.6.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data hmmpfam_fake.out, NONE, 1.1.2.1 testaln2.fasta, 1.1, 1.1.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools RNAMotif.pm,1.10,1.10.4.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO hmmer_pull.pm, NONE, 1.1.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit HmmpfamHit.pm, NONE, 1.1.2.1 PullHitI.pm, NONE, 1.1.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result HmmpfamResult.pm, NONE, 1.1.2.1 PullResultI.pm, NONE, 1.1.2.1 GenericResult.pm, 1.23, 1.23.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t hmmer_pull.t,NONE,1.1.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP HmmpfamHSP.pm, NONE, 1.1.2.1 PullHSPI.pm, NONE, 1.1.2.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO hmmer_pull.pm,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio PullParserI.pm,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO hmmer_pull.pm,1.2,1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Ontology Ontology.pm,1.18,1.19   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Ontology OBOEngine.pm,1.6,1.7   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Ontology OBOEngine.pm, 1.7, 1.8 Ontology.pm, 1.19, 1.20 SimpleOntologyEngine.pm, 1.17, 1.18   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.97,1.98   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.97,1.98   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-live INSTALL,1.47,1.48   Christopher John Fields
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.97,1.98   Sendu Bala
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.98,1.99   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result HmmpfamResult.pm, 1.1, 1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.97,1.98   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-live/Bio/Annotation Reference.pm, 1.24, 1.25   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM/IO transfac.pm, 1.14, 1.15   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t Probcons.t,1.2,1.3   Albert Vilella
• [Bioperl-guts-l] [Bug 1419] Bio::Search::Result::ResultFactory isnota Bio::Factory::ResultFactoryI   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t/data ssp160.embl.1,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/LiveSeq Mutator.pm,1.33,1.34   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Mutator.t,1.9,1.10   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Mutator.t,1.10,1.11   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Mutator.t,1.11,1.12   Christopher John Fields
• [Bioperl-guts-l] [Bug 1701] Bio::Variation::SeqDiff does not report trivname   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1953] Inconsistency between Bio::Factory::FTLocationFactory->from_string and Bio::Location::Split->to_FTstring   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1957] Add some tests for fpc.pm to t/MapIO.t   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1957] Add some tests for fpc.pm to t/MapIO.t   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t/data ctgdemo.fpc,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t MapIO.t,1.4,1.5   Christopher John Fields
• [Bioperl-guts-l] [Bug 1957] Add some tests for fpc.pm to t/MapIO.t   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1953] Inconsistency between Bio::Factory::FTLocationFactory->from_string and Bio::Location::Split->to_FTstring   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1953] Inconsistency between Bio::Factory::FTLocationFactory->from_string and Bio::Location::Split->to_FTstring   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2081] Error in length_aln method when parsing BLAST report with Bio::SearchIO   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2075] rpsblast parse problem w/r frame and strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.92,1.93   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2075] rpsblast parse problem w/r frame and strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2075] rpsblast parse problem w/r frame and strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2075] rpsblast parse problem w/r frame and strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2075] rpsblast parse problem w/r frame and strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2075] rpsblast parse problem w/r frame and strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2075] rpsblast parse problem w/r frame and strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.99,1.100   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM SiteMatrix.pm, 1.31, 1.32   Stefan Kirov
• [Bioperl-guts-l] [Bug 2075] rpsblast parse problem w/r frame and strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result BlastResult.pm, 1.22, 1.23   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.100,1.101   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP GenericHSP.pm, 1.68, 1.69   Christopher John Fields
• [Bioperl-guts-l] [Bug 2083] New: Biblio_biofetch.t tests pass, but they really don't!   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2083] Biblio_biofetch.t tests pass, but they really don't!   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2083] Biblio_biofetch.t tests pass, but they really don't!   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2083] Biblio_biofetch.t tests pass, but they really don't!   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm, 1.101, 1.102 blastxml.pm, 1.36, 1.37   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP GenericHSP.pm, 1.69, 1.70   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Search/Result BlastResult.pm, 1.23, 1.24   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.93,1.94   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.140,1.141   Christopher John Fields
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t genbank.t,1.11,1.12   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.141,1.142   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm,1.119,1.120   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.78, 1.79 Panel.pm, 1.120, 1.121   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm, 1.94, 1.95 genbank.pm, 1.142, 1.143   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t Index.t, 1.44, 1.45 genbank.t, 1.12, 1.13   Christopher John Fields
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.95,1.96   Christopher John Fields
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gff.pm,1.43,1.44   Christopher John Fields
• [Bioperl-guts-l] [Bug 2071] Bio::FeatureIO::gff does not correctly write gff3 Target strand   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO bl2seq.pm, 1.23, 1.24 clustalw.pm, 1.37, 1.38 emboss.pm, 1.17, 1.18 largemultifasta.pm, 1.9, 1.10 mase.pm, 1.11, 1.12 mega.pm, 1.11, 1.12 meme.pm, 1.10, 1.11 msf.pm, 1.22, 1.23 pfam.pm, 1.12, 1.13 phylip.pm, 1.36, 1.37 po.pm, 1.6, 1.7 prodom.pm, 1.10, 1.11 selex.pm, 1.14, 1.15 stockholm.pm, 1.15, 1.16   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-live/Bio/Tree/Draw Cladogram.pm, 1.12, 1.13   Gabriel Valiente
• [Bioperl-guts-l] bioperl-live/Bio/Tree/Draw Cladogram.pm, 1.13, 1.14   Gabriel Valiente
• [Bioperl-guts-l] [Bug 2084] New: Bio::Matrix::PSM::IO::mast.pm shows wrong positions   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.113,1.114   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/t Index.t,1.45,1.46   Christopher John Fields
• [Bioperl-guts-l] [Bug 2065] Exception while parsing big blast result files   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t Index.t,1.46,1.47   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gff.pm,1.44,1.45   Scott Cain
• [Bioperl-guts-l] bioperl-live/Bio/Tree Compatible.pm,1.5,1.6   Gabriel Valiente
• [Bioperl-guts-l] bioperl-live/t PhysicalMap.t,1.2,1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Map FPCMarker.pm, 1.7, 1.8 Physical.pm, 1.8, 1.9   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/MapIO fpc.pm,1.6,1.7   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data biofpc.fpc, NONE, 1.1 biofpc.cor, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data/seqfeaturedb - New directory   Lincoln Stein
• [Bioperl-guts-l] [Bug 2065] Exception while parsing big blast result files   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2065] Exception while parsing big blast result files   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-ext README,1.7,1.8   Christopher John Fields
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2065] Exception while parsing big blast result files   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Search SearchUtils.pm,1.17,1.18   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.143,1.144   Christopher John Fields
• [Bioperl-guts-l] [Bug 2062] No space in tag values of genbank file when they include a line break   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Structure/SecStr/DSSP Res.pm, 1.10, 1.11   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Structure/SecStr/DSSP Res.pm, 1.11, 1.12   Christopher John Fields
• [Bioperl-guts-l] [Bug 1966] problem about Bio::Structure::SecStr::DSSP::Res   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.99,1.100   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.13, 1.14 Store.pm, 1.21, 1.22   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/t BioDBSeqFeature.t,NONE,1.1   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.20, 1.21   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.15, 1.16 berkeleydb.pm, 1.5, 1.6 memory.pm, 1.5, 1.6   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/t/data/seqfeaturedb test.gff3, NONE, 1.1   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Annotation OntologyTerm.pm, 1.15, 1.16 Reference.pm, 1.25, 1.26 SimpleValue.pm, 1.18, 1.19 StructuredValue.pm, 1.7, 1.8 Target.pm, 1.7, 1.8 TypeManager.pm, 1.6, 1.7   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-live/Bio PrimarySeqI.pm,1.66,1.67   Christopher John Fields
• [Bioperl-guts-l] [Bug 1953] Inconsistency between Bio::Factory::FTLocationFactory->from_string and Bio::Location::Split->to_FTstring   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1953] Inconsistency between Bio::Factory::FTLocationFactory->from_string and Bio::Location::Split->to_FTstring   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1953] Inconsistency between Bio::Factory::FTLocationFactory->from_string and Bio::Location::Split->to_FTstring   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1954] SeqIO::game does not write or read <computational_analysis> elements   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/DB Fasta.pm,1.44,1.45   Lincoln Stein
• [Bioperl-guts-l] [Bug 2063] Bio::DB::Fasta fails to index files over 4GB   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.114,1.115   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm, 1.115, 1.116 Panel.pm, 1.121, 1.122   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.116,1.117   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.117,1.118   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph translation.pm, 1.36, 1.37   Lincoln Stein
• [Bioperl-guts-l] [Bug 1966] problem about Bio::Structure::SecStr::DSSP::Res   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1966] problem about Bio::Structure::SecStr::DSSP::Res   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Assembly Contig.pm, 1.11, 1.12 IO.pm, 1.6, 1.7   Mauricio Herrera Cuadra
• [Bioperl-guts-l] bioperl-live/Bio/Biblio Article.pm, 1.14, 1.15 Book.pm, 1.14, 1.15 BookArticle.pm, 1.13, 1.14 IO.pm, 1.17, 1.18 Journal.pm, 1.13, 1.14 JournalArticle.pm, 1.14, 1.15 MedlineBook.pm, 1.10, 1.11 MedlineBookArticle.pm, 1.10, 1.11 MedlineJournalArticle.pm, 1.10, 1.11 Person.pm, 1.15, 1.16 PubmedArticle.pm, 1.9, 1.10 PubmedBookArticle.pm, 1.9, 1.10 PubmedJournalArticle.pm, 1.10, 1.11 Ref.pm, 1.12, 1.13 TechReport.pm, 1.12, 1.13 WebResource.pm, 1.13, 1.14   Mauricio Herrera Cuadra
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2074] bioperl-ext: make test fails using io_lib v. 1.9 or higher   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-ext README,1.8,1.9   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM SiteMatrix.pm, 1.32, 1.33   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t psm.t, 1.12, 1.13 masta.t, 1.3, 1.4 SiteMatrix.t, 1.4, 1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM/IO masta.pm, 1.10, 1.11   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph primers.pm, 1.7, 1.8   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Align Utilities.pm,1.20,1.21   Jason Stajich
• [Bioperl-guts-l] [Bug 2085] New: The same lineage was described in different depths? Can't cope!   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2085] The same lineage was described in different depths? Can't cope!   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.96,1.97   Christopher John Fields
• [Bioperl-guts-l] [Bug 2085] The same lineage was described in different depths? Can't cope!   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2085] The same lineage was described in different depths? Can't cope!   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2085] The same lineage was described in different depths? Can't cope!   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy list.pm,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy list.pm,1.2,1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2086] New: EMBL parser should not look for FT, DE and other line prefixes when it is ID line   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.97,1.98   Christopher John Fields
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio Species.pm,1.35,1.36   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy list.pm,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2087] New: EMBL parser silently leaks through when input is not in EMBL format   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2087] EMBL parser silently leaks through when input is not in EMBL format   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2087] EMBL parser silently leaks through when input is not in EMBL format   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Amap.pm, NONE, 1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.98,1.99   Christopher John Fields
• [Bioperl-guts-l] [Bug 2087] EMBL parser silently leaks through when input is not in EMBL format   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Amap.pm, 1.1, 1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Amap.pm, 1.2, 1.3   Albert Vilella
• [Bioperl-guts-l] bioperl-run/t Amap.t,NONE,1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Amap.pm, 1.3, 1.4   Albert Vilella
• [Bioperl-guts-l] [Bug 2077] bp_sreformat.pl creates broken GenBank formatted file from EMBL input   bugzilla-daemon at newportal.open-bio.org

Last message date: Thu Aug 31 18:20:04 EDT 2006
Archived on: Thu Aug 31 18:20:06 EDT 2006

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