September 2005 Archives by subject

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Starting: Thu Sep 1 14:51:07 EST 2005
Ending: Fri Sep 30 23:01:15 EST 2005
Messages: 325

• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor/dbi mysql.pm, 1.60, 1.61   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Factory FTLocationFactory.pm, 1.17, 1.18   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph graded_segments.pm, 1.17, 1.18 merged_alignment.pm, 1.2, 1.3   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph merge_parts.pm, 1.1, 1.2   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph whiskerplot.pm, 1.1, 1.2 xyplot.pm, 1.19, 1.20   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein ELM.pm, 1.6, 1.7   Richard Adams
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/Molphy Result.pm, 1.5, 1.6   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Primer/Assessor Base.pm, 1.1, 1.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/examples/align align_on_codons.pl, 1.1, 1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/scripts/seq make_mrna_protein.PLS, 1.2, 1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t DBCUTG.t, 1.16, 1.17 Domcut.t, 1.11, 1.12 ELM.t, 1.4, 1.5 ESEfinder.t, 1.12, 1.13   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t readtest.abi, 1.1, NONE readtest.ctf, 1.1, NONE readtest.exp, 1.1, NONE readtest.pln, 1.1, NONE readtest.ztr, 1.1, NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t readtest.abi, NONE, 1.1 readtest.ctf, NONE, 1.1 readtest.exp, NONE, 1.1 readtest.pln, NONE, 1.1 readtest.ztr, NONE, 1.1 LocationFactory.t, 1.9, 1.10   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phylip Base.pm, 1.6, 1.7 PhylipConf.pm, 1.7, 1.8 ProtDist.pm, 1.24, 1.25   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phylip Consense.pm, 1.6, 1.7 PhylipConf.pm, 1.6, 1.7 ProtPars.pm, 1.17, 1.18 SeqBoot.pm, 1.6, 1.7   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phylip Consense.pm, 1.7, 1.8 DrawGram.pm, 1.7, 1.8 DrawTree.pm, 1.6, 1.7 SeqBoot.pm, 1.7, 1.8   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phylip Consense.pm, 1.8, 1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phylip ProtDist.pm, 1.23, 1.24   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phylip ProtPars.pm, 1.18, 1.19   Jason Stajich
• [Bioperl-guts-l] [Bug 1479] remove_Descedent overzealously removing ancestor in Bio::Tree::Node   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1521] GenBank location isn't displayed correctly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1681] Can't retrieve taxonomy of species in NCBI Taxonomy db   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1720] Bug in Bio::SeqFeature::Generic.pm DESTROY causes object corruption.. fix included!   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1730] wrong residue number when loading pdb file (Bio::Structure::IO)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1730] wrong residue number when loading pdb file (Bio::Structure::IO)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1730] wrong residue number when loading pdb file (Bio::Structure::IO)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1754] Bio::Location::Fuzzy.pm -> SwissProt FeatureTable locationvalue error (undef values!)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1802] blastn gives a strange report : Query: 0 - Sbjct: 96 a 96 on   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1821] Bio::Align::DNAStatistics cannot calculate correct the number of synonymouse site of sequece in alignment   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1822] nhx.pm does not print bootstrap values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1823] TreeIO::nhx doesn't write internal node labels to nhx file   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1825] bug in parsing gene names for swissprot entry in module Bio::SeqIO:swiss   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1825] bug in parsing gene names for swissprot entry in module Bio::SeqIO:swiss   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1825] bug in parsing gene names for swissprot entry in module Bio::SeqIO:swiss   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1829] -ve xyplot.pm - gff data must be in order   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1830] strange dashes on the negative axis when using xyplot   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1842] PrimarySeq::length returns wrong length for translated sequence, by counting stop codon   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1844] Tree::Node and Tree:NodeI - wrong output of "height" method   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1849] New patch to Bio::Tools::Lucy   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1849] New patch to Bio::Tools::Lucy   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1849] New: New patch to   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1850] Matrix::Generic 'Synopsis' needs update   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1850] Matrix::Generic 'Synopsis' needs update   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1850] New: Matrix::Generic 'Synopsis' needs update   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1852] New: Node.pm v1.40 doesn't read branch lengths properly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1852] Node.pm v1.40 doesn't read branch lengths properly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1852] Node.pm v1.40 doesn't read branch lengths properly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1852] Node.pm v1.40 doesn't read branch lengths properly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1853] 'bp_split_seq.pl' enhancement due to an exception   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1853] 'bp_split_seq.pl' enhancement due to an exception   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1853] 'bp_split_seq.pl' enhancement due to an exception   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1853] 'bp_split_seq.pl' enhancement due to an exception   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1853] New: 'bp_split_seq.pl' enhancement due to an exception   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1854] New: TreeIO cannot parse some Nexus tree files, causing next_tree to fail silently   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1854] TreeIO cannot parse some Nexus tree files, causing next_tree to fail silently   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1855] New: Nexus tree file parser fails for many Nexus tree files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1855] Nexus tree file parser fails for many Nexus tree files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1855] Nexus tree file parser fails for many Nexus tree files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1855] Nexus tree file parser fails for many Nexus tree files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1855] Nexus tree file parser fails for many Nexus tree files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1855] Nexus tree file parser fails for many Nexus tree files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1855] Nexus tree file parser fails for many Nexus tree files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1855] Nexus tree file parser fails for many Nexus tree files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1855] Nexus tree file parser fails for many Nexus tree files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1855] Nexus tree file parser fails for many Nexus tree files   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1856] New: TreeIO's Nexus tree file parser requires tree and not TREE or Tree   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1856] TreeIO's Nexus tree file parser requires tree and not TREE or Tree   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1856] TreeIO's Nexus tree file parser requires tree and not TREE or Tree   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1858] New: wrong documentation for delete_edge method in TreeFunctionsI   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1858] wrong documentation for delete_edge method in TreeFunctionsI   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1858] wrong documentation for delete_edge method in TreeFunctionsI   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1864] New: unsuitable regular expression of blast.pm and unsuitable condition of RemoteBlast.pm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1864] unsuitable regular expression of blast.pm and unsuitable condition of RemoteBlast.pm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1864] unsuitable regular expression of blast.pm and unsuitable condition of RemoteBlast.pm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1865] New: unsuitable regular expression of blast.pm and unsuitable condition of RemoteBlast.pm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1865] unsuitable regular expression of blast.pm and unsuitable condition of RemoteBlast.pm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1867] New: Bio::SimpleAlign gap_line and all_gap_line methods ignore $gapchar   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1868] Bio::SimpleAlign remove_gaps method does not pass $gapchar variable to gap_line / all_gap_line   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1868] New: Bio::SimpleAlign remove_gaps method does not pass $gapchar variable to gap_line / all_gap_line   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1869] Bio::Tools::GFF truncates attribute list at first whitespace in attribute values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1869] Bio::Tools::GFF truncates attribute list at first whitespace in attribute values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1869] Bio::Tools::GFF truncates attribute list at first whitespace in attribute values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1869] Bio::Tools::GFF truncates attribute list at first whitespace in attribute values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1869] Bio::Tools::GFF truncates attribute list at first whitespace in attribute values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1869] Bio::Tools::GFF truncates attribute list at first whitespace in attribute values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1869] Bio::Tools::GFF truncates attribute list at first whitespace in attribute values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1869] New: Bio::Tools::GFF truncates attribute list at first whitespace in attribute values   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1870] New: remove_Node leaves parenthesis after deleting internal leaf   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1870] remove_Node leaves parenthesis after deleting internal leaf   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1870] remove_Node leaves parenthesis after deleting internal leaf   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1870] remove_Node leaves parenthesis after deleting internal leaf   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1871] New: SeqIO can't parse GenBank correctly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1871] SeqIO can't parse GenBank correctly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1871] SeqIO can't parse GenBank correctly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1871] SeqIO can't parse GenBank correctly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1871] SeqIO can't parse GenBank correctly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] BioPerl 1.5 fasta.pm->next_seq() fails on sequence   John Damask
• [Bioperl-guts-l] BioPerl 1.5 fasta.pm->next_seq() fails on sequence   John Damask
• [Bioperl-guts-l] bioperl-db/Bio/DB BioDB.pm,1.11,1.12   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/scripts/biosql load_ontology.pl, 1.10, 1.11   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/scripts/biosql load_ontology.pl, 1.9, 1.10 load_seqdatabase.pl, 1.22, 1.23   Hilmar Lapp
• [Bioperl-guts-l] bioperl-ext README,1.6,1.7 Makefile.PL,1.5,1.6   Jason Stajich
• [Bioperl-guts-l] bioperl-ext/Bio/Ext Makefile.PL,1.2,NONE   Jason Stajich
• [Bioperl-guts-l] bioperl-ext/Bio/Ext/Align Align.xs,1.4,1.5   Yee Man Chan
• [Bioperl-guts-l] bioperl-ext/Bio/Ext/Align Makefile.PL,1.4,1.5   Jason Stajich
• [Bioperl-guts-l] bioperl-ext/Bio/Ext/Align/libs dpalign.h, 1.4, 1.5 linspc.c, 1.3, 1.4   Yee Man Chan
• [Bioperl-guts-l] bioperl-ext/Bio/SeqIO/staden read.pm,1.6,1.7   Jason Stajich
• [Bioperl-guts-l] bioperl-live bptutorial.pl,1.153,1.154   Brian Osborne
• [Bioperl-guts-l] bioperl-live bptutorial.pl,1.154,1.155   Brian Osborne
• [Bioperl-guts-l] bioperl-live bptutorial.pl,1.155,1.156   Brian Osborne
• [Bioperl-guts-l] bioperl-live bptutorial.pl,1.156,1.157   Brian Osborne
• [Bioperl-guts-l] bioperl-live bptutorial.pl,1.157,1.158   Brian Osborne
• [Bioperl-guts-l] bioperl-live INSTALL,1.38,1.39   Brian Osborne
• [Bioperl-guts-l] bioperl-live INSTALL,1.39,1.40   Brian Osborne
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.81,1.82   Scott Cain
• [Bioperl-guts-l] bioperl-live/Bio LocationI.pm,1.19,1.20   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio LocationI.pm,1.20,1.21   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio LocationI.pm,1.21,1.22   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio PrimarySeq.pm,1.84,1.85   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio PrimarySeqI.pm,1.55,1.56   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio PrimarySeqI.pm,1.56,1.57   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio PrimarySeqI.pm,1.57,1.58   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio SearchIO.pm,1.33,1.34   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.88,1.89   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Align DNAStatistics.pm,1.23,1.24   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO largemultifasta.pm, 1.4, 1.5   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO phylip.pm,1.31,1.32   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/DB CUTG.pm,1.5,1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB/Biblio eutils.pm,1.7,1.8   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO gff.pm,1.34,1.35   Scott Cain
• [Bioperl-guts-l] bioperl-live/Bio/Graph ProteinGraph.pm,1.23,1.24   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Graph SimpleGraph.pm,1.8,1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Feature.pm, 1.40, 1.41 FeatureFile.pm, 1.70, 1.71 Glyph.pm, 1.89, 1.90 Panel.pm, 1.104, 1.105   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm, 1.88, 1.89 Panel.pm, 1.103, 1.104   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.90,1.91   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm,1.105,1.106   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph merged_alignment.pm, 1.1, 1.2   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph merged_alignment.pm, NONE, 1.1   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph segmented_keyglyph.pm, 1.5, 1.6   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph generic.pm, 1.29, 1.30   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph merge_parts.pm, NONE, 1.1 minmax.pm, 1.1, 1.2   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph track.pm, 1.9, 1.10 xyplot.pm, 1.17, 1.18   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph translation.pm, 1.20, 1.21   Aaron J Mackey
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph translation.pm, 1.21, 1.22   Aaron J Mackey
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph whiskerplot.pm, NONE, 1.1 xyplot.pm, 1.18, 1.19   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph xyplot.pm, 1.20, 1.21   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Location Atomic.pm,1.12,1.13   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Location Split.pm,1.38,1.39   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Matrix Generic.pm,1.5,1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Search/Hit Fasta.pm,1.6,1.7   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.88,1.89   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blasttable.pm,1.2,1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO EventHandlerI.pm, 1.9, 1.10 FastHitEventBuilder.pm, 1.7, 1.8 SearchResultEventBuilder.pm, 1.36, 1.37 SearchWriterI.pm, 1.8, 1.9 axt.pm, 1.3, 1.4 blast.pm, 1.89, 1.90 blastxml.pm, 1.27, 1.28 exonerate.pm, 1.9, 1.10 fasta.pm, 1.44, 1.45 megablast.pm, 1.2, 1.3 psl.pm, 1.7, 1.8 sim4.pm, 1.7, 1.8 waba.pm, 1.11, 1.12   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO exonerate.pm,1.8,1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO psl.pm,1.6,1.7   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Seq LargeLocatableSeq.pm,1.2,1.3   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Seq LargeSeqI.pm,1.2,1.3   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Generic.pm,1.91,1.92   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO entrezgene.pm,1.14,1.15   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO FTHelper.pm, 1.58, 1.59 MultiFile.pm, 1.8, 1.9 abi.pm, 1.9, 1.10 ace.pm, 1.15, 1.16 agave.pm, 1.9, 1.10 alf.pm, 1.7, 1.8 asciitree.pm, 1.2, 1.3 bsml.pm, 1.20, 1.21 chadoxml.pm, 1.15, 1.16 chaos.pm, 1.6, 1.7 chaosxml.pm, 1.2, 1.3 ctf.pm, 1.9, 1.10 exp.pm, 1.9, 1.10 fastq.pm, 1.9, 1.10 game.pm, 1.33, 1.34 gcg.pm, 1.23, 1.24 kegg.pm, 1.10, 1.11 largefasta.pm, 1.18, 1.19 locuslink.pm, 1.9, 1.10 phd.pm, 1.18, 1.19 pir.pm, 1.20, 1.21 pln.pm, 1.7, 1.8 qual.pm, 1.28, 1.29 raw.pm, 1.17, 1.18 scf.pm, 1.33, 1.34 swiss.pm, 1.87, 1.88 tab.pm, 1.3, 1.4 tigr.pm, 1.7, 1.8 tigrxml.pm, 1.5, 1.6 tinyseq.pm, 1.4, 1.5 ztr.pm, 1.9, 1.10   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.120,1.121   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO metafasta.pm,1.3,1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO tab.pm,1.2,1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO tigr.pm,1.6,1.7   Aaron J Mackey
• [Bioperl-guts-l] bioperl-live/Bio/Tools AnalysisResult.pm, 1.13, 1.14 BPbl2seq.pm, 1.24, 1.25 BPpsilite.pm, 1.22, 1.23 Blast.pm, 1.31, 1.32 CodonTable.pm, 1.29, 1.30 Coil.pm, 1.1, 1.2 ECnumber.pm, 1.7, 1.8 ESTScan.pm, 1.10, 1.11 Eponine.pm, 1.8, 1.9 Fgenesh.pm, 1.3, 1.4 GFF.pm, 1.48, 1.49 Geneid.pm, 1.1, 1.2 Genemark.pm, 1.12, 1.13 Genomewise.pm, 1.2, 1.3 Genscan.pm, 1.24, 1.25 Grail.pm, 1.6, 1.7 HMM.pm, 1.3, 1.4 MZEF.pm, 1.9, 1.10 RestrictionEnzyme.pm, 1.27, 1.28 SeqAnal.pm, 1.13, 1.14 SeqPattern.pm, 1.16, 1.17 Sigcleave.pm, 1.19, 1.20 Signalp.pm, 1.4, 1.5 WWW.pm, 1.14, 1.15 dpAlign.pm, 1.10, 1.11 pSW.pm, 1.22, 1.23   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools Blat.pm, 1.3, 1.4 EPCR.pm, 1.11, 1.12 Est2Genome.pm, 1.13, 1.14 FootPrinter.pm, 1.5, 1.6 Gel.pm, 1.6, 1.7 Hmmpfam.pm, 1.4, 1.5 IUPAC.pm, 1.23, 1.24 OddCodes.pm, 1.13, 1.14 Prints.pm, 1.8, 1.9 Profile.pm, 1.4, 1.5 Promoterwise.pm, 1.3, 1.4 RandomDistFunctions.pm, 1.3, 1.4 Seg.pm, 1.6, 1.7 Tmhmm.pm, 1.6, 1.7 ipcress.pm, 1.3, 1.4 isPcr.pm, 1.4, 1.5   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools CodonTable.pm,1.30,1.31   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools dpAlign.pm,1.9,1.10   Yee Man Chan
• [Bioperl-guts-l] bioperl-live/Bio/Tools GuessSeqFormat.pm,1.9,1.10   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools Lucy.pm,1.10,1.11   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools Lucy.pm,1.11,1.12   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools Promoterwise.pm,1.4,1.5   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools Pseudowise.pm,1.6,1.7   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools RepeatMasker.pm,1.3,1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools RestrictionEnzyme.pm, 1.28, 1.29   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools SeqStats.pm,1.21,1.22   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools SeqStats.pm,1.22,1.23   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools SeqStats.pm,1.23,1.24   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Alignment Consed.pm, 1.35, 1.36 Trim.pm, 1.17, 1.18   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis SimpleAnalysisBase.pm, 1.5, 1.6   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/DNA ESEfinder.pm, 1.5, 1.6   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein Domcut.pm, 1.9, 1.10 ELM.pm, 1.7, 1.8 GOR4.pm, 1.8, 1.9 HNN.pm, 1.7, 1.8 Mitoprot.pm, 1.4, 1.5 NetPhos.pm, 1.8, 1.9 Scansite.pm, 1.9, 1.10 Sopma.pm, 1.7, 1.8   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Blast HSP.pm, 1.19, 1.20 HTML.pm, 1.15, 1.16 Sbjct.pm, 1.20, 1.21   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/BPlite HSP.pm, 1.27, 1.28 Sbjct.pm, 1.28, 1.29   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/HMMER Results.pm,1.23,1.24   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/HMMER Set.pm,1.13,1.14   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo Molphy.pm,1.5,1.6   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.31,1.32   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/PAML Result.pm, 1.17, 1.18   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/Phylip ProtDist.pm, 1.6, 1.7   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Prediction Exon.pm, 1.12, 1.13 Gene.pm, 1.11, 1.12   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Primer AssessorI.pm, 1.2, 1.3 Feature.pm, 1.1, 1.2 Pair.pm, 1.1, 1.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run GenericParameters.pm, 1.2, 1.3 ParametersI.pm, 1.2, 1.3 RemoteBlast.pm, 1.26, 1.27 WrapperBase.pm, 1.17, 1.18   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run RemoteBlast.pm, 1.22, 1.23   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run RemoteBlast.pm, 1.23, 1.24   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run RemoteBlast.pm, 1.24, 1.25   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run RemoteBlast.pm, 1.25, 1.26   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run WrapperBase.pm, 1.15, 1.16   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run WrapperBase.pm, 1.16, 1.17   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Sim4 Exon.pm, 1.12, 1.13 Results.pm, 1.21, 1.22   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Spidey Exon.pm, 1.2, 1.3 Results.pm, 1.5, 1.6   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tree Node.pm, 1.40, 1.41 TreeFunctionsI.pm, 1.21, 1.22   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tree Node.pm,1.38,1.39   Gabriel Valiente
• [Bioperl-guts-l] bioperl-live/Bio/Tree Node.pm,1.39,1.40   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tree NodeI.pm,1.30,1.31   Gabriel Valiente
• [Bioperl-guts-l] bioperl-live/Bio/Tree/Draw Cladogram.pm,1.5,1.6   Gabriel Valiente
• [Bioperl-guts-l] bioperl-live/Bio/Tree/Draw Cladogram.pm,1.6,1.7   Gabriel Valiente
• [Bioperl-guts-l] bioperl-live/Bio/Tree/Draw Cladogram.pm,1.7,1.8   Gabriel Valiente
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO nexus.pm,1.9,1.10   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO nhx.pm,1.12,1.13   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO TreeEventBuilder.pm, 1.19, 1.20   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Variation AAChange.pm, 1.14, 1.15 AAReverseMutate.pm, 1.7, 1.8 Allele.pm, 1.10, 1.11 DNAMutation.pm, 1.12, 1.13 IO.pm, 1.16, 1.17 RNAChange.pm, 1.11, 1.12 SNP.pm, 1.12, 1.13 SeqDiff.pm, 1.17, 1.18 VariantI.pm, 1.14, 1.15   Jason Stajich
• [Bioperl-guts-l] bioperl-live/doc/howto/html Beginners.html, 1.3, 1.4 Feature-Annotation.html, 1.8, 1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/pdf Beginners.pdf,NONE,1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/doc/howto/pdf Feature-Annotation.pdf, 1.6, 1.7 Flat_Databases.pdf, 1.5, 1.6 Graphics-HOWTO.pdf, 1.7, 1.8 OBDA_Access.pdf, 1.5, 1.6 PAML.pdf, 1.5, 1.6 PopGen.pdf, 1.6, 1.7 SearchIO.pdf, 1.8, 1.9 SeqIO.pdf, 1.8, 1.9 SimpleWebAnalysis.pdf, 1.5, 1.6 Trees.pdf, 1.6, 1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/txt Beginners.txt, 1.3, 1.4 Feature-Annotation.txt, 1.6, 1.7 PopGen.txt, 1.2, 1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml Beginners.xml,1.4,1.5   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml PopGen.xml,1.3,1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/examples/align clustalw.pl,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/examples/biblio biblio-eutils-example.pl, NONE, 1.1 biblio-soap-example.pl, NONE, 1.1 biblio_examples.pl, 1.8, NONE   Allen Day
• [Bioperl-guts-l] bioperl-live/examples/biblio biblio-eutils-example.pl, NONE, 1.1 biblio-soap-example.pl, NONE, 1.1 biblio_examples.pl, 1.8, NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live/examples/root/lib/Bio PrimarySeqI.pm, 1.1, 1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/maintenance modules.pl,1.14,1.15   Albert Vilella
• [Bioperl-guts-l] bioperl-live/maintenance symlink_scripts.PLS, 1.5, 1.6   Scott Cain
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF bulk_load_gff.PLS, 1.32, 1.33   Jason Stajich
• [Bioperl-guts-l] bioperl-live/scripts/seq split_seq.PLS,1.3,1.4   Jason Stajich
• [Bioperl-guts-l] bioperl-live/scripts/tree tree2pag.PLS,1.2,1.3   Albert Vilella
• [Bioperl-guts-l] bioperl-live/t abi.t, 1.2, 1.3 ctf.t, 1.1, 1.2 embl.t, 1.1, 1.2 exp.t, 1.1, 1.2 pln.t, 1.1, 1.2 ztr.t, 1.1, 1.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t abi.t, NONE, 1.1 ctf.t, NONE, 1.1 exp.t, NONE, 1.1 pln.t, NONE, 1.1 ztr.t, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t abi.t,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t asciitree.t,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Assembly.t, 1.2, 1.3 Biblio_biofetch.t, 1.10, 1.11 DBFasta.t, 1.7, 1.8 Domcut.t, 1.10, 1.11 EMBL_DB.t, 1.14, 1.15 ESEfinder.t, 1.11, 1.12 FeatureIO.t, 1.4, 1.5 FootPrinter.t, 1.3, 1.4 GOR4.t, 1.10, 1.11 GOterm.t, 1.9, 1.10 MeSH.t, 1.3, 1.4 Molphy.t, 1.1, 1.2 NetPhos.t, 1.6, 1.7 OntologyEngine.t, 1.7, 1.8 PAML.t, 1.18, 1.19 Perl.t, 1.7, 1.8 Pictogram.t, 1.5, 1.6 RefSeq.t, 1.11, 1.12 Registry.t, 1.9, 1.10 Relationship.t, 1.3, 1.4 RelationshipType.t, 1.4, 1.5 RepeatMasker.t, 1.4, 1.5 RestrictionIO.t, 1.7, 1.8 Scansite.t, 1.3, 1.4 SearchIO.t, 1.89, 1.90 SeqFeature.t, 1.35, 1.36 SeqHound_DB.t, 1.2, 1.3 Sopma.t, 1.6, 1.7 Taxonomy.t, 1.6, 1.7 Term.t, 1.10, 1.11 Variation_IO.t, 1.19, 1.20 XEMBL_DB.t, 1.4, 1.5 abi.t, 1.3, 1.4 ctf.t, 1.2, 1.3 entrezgene.t, 1.2, 1.3 exp.t, 1.2, 1.3 pln.t, 1.2, 1.3 seqread_fail.t, 1.4, 1.5 singlet.t, 1.4, 1.5 ztr.t, 1.2, 1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t BioGraphics.t,1.15,1.16   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t cigarstring.t,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t DBCUTG.t,1.15,1.16   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t ELM.t,1.2,1.3   Richard Adams
• [Bioperl-guts-l] bioperl-live/t ELM.t,1.3,1.4   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t ESEfinder.t,1.10,1.11   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t fasta.t,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Genewise.t,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Genomewise.t,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t HNN.t,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Index.t,1.39,1.40   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t Index.t,1.40,1.41   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t LinkageMap.t,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Location.t,1.27,1.28   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t LocationFactory.t,1.8,1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t LocusLink.t,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Map.t,1.3,1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t masta.t,1.2,1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t Matrix.t,1.5,1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t metafasta.t,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t MicrosatelliteMarker.t,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t MitoProt.t,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t PrimarySeq.t,1.19,1.20   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t PrimarySeq.t,1.20,1.21   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t protgraph.t,1.14,1.15   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t Pseudowise.t,1.2,1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t raw.t,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t RemoteBlast.t,1.13,1.14   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t RemoteBlast.t,1.14,1.15   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t SeqFeature.t,1.36,1.37   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t SeqFeature.t,1.37,1.38   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t SeqHound_DB.t,1.1,1.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t tab.t,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t tinyseq.t,1.2,1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t TreeIO.t,1.31,1.32   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t Variation_IO.t,1.17,1.18   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t Variation_IO.t,1.18,1.19   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t/data knownGene.gff3,1.3,1.4   Scott Cain
• [Bioperl-guts-l] bioperl-live/t/data knownGene.gff3,1.3,1.4   Allen Day
• [Bioperl-guts-l] bioperl-live/t/data knownGene.gff3,1.3,1.4   Chervitz, Steve
• [Bioperl-guts-l] bioperl-live/t/data pseudowise.out,NONE,1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t/data Rab1.chaos-xml,NONE,1.1   Chris Mungall
• [Bioperl-guts-l] bioperl-live/t/data readtest.abi, NONE, 1.1 readtest.ctf, NONE, 1.1 readtest.exp, NONE, 1.1 readtest.pln, NONE, 1.1 readtest.ztr, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t/data tree_nonewline.nexus,NONE,1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Installer EMBOSS.pm,1.4,1.5   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Installer Generic.pm,1.1,1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Installer PAML.pm,1.3,1.4   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Installer Probcons.pm,1.1,1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Installer TCoffee.pm,1.1,1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run EMBOSSacd.pm,1.3,1.4   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Genewise.pm,1.20,1.21   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Genewise.pm,1.21,1.22   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run JavaRunner.pm,1.1,1.2   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run PiseJob.pm,1.10,1.11   Catherine Letondal
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Primer3.pm,1.9,1.10   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Pseudowise.pm,1.13,1.14   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Tmhmm.pm,1.8,1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run TribeMCL.pm,1.16,1.17   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Clustalw.pm, 1.41, 1.42 TCoffee.pm, 1.39, 1.40   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Exonerate.pm, 1.2, 1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment MAFFT.pm, 1.3, 1.4   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment TCoffee.pm, 1.38, 1.39   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Codeml.pm, 1.35, 1.36   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phylip PhylipConf.pm, 1.8, 1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-run/scripts bioperl_application_installer.PLS, 1.1, 1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/t Blat.t,1.10,1.11   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t EMBOSS.t,1.10,1.11   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t EMBOSS.t,1.11,1.12   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Eponine.t,1.7,1.8   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Exonerate.t,1.2,1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Exonerate.t,1.3,1.4   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Genewise.t,1.10,1.11   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Genewise.t,1.11,1.12   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Genewise.t,1.12,1.13   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Genewise.t,1.8,1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Genewise.t,1.9,1.10   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t MAFFT.t,1.1,1.2   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Muscle.t, 1.4, 1.5 TCoffee.t, 1.24, 1.25   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Muscle.t,1.3,1.4   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Primer3.t,1.2,1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Probcons.t,1.1,1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/t ProtDist.t,1.14,1.15   George Hartzell
• [Bioperl-guts-l] bioperl-run/t ProtPars.t,1.7,1.8   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Pseudowise.t,1.3,1.4   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t Pseudowise.t,1.4,1.5   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t RepeatMasker.t,1.7,1.8   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t RepeatMasker.t,1.8,1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t RepeatMasker.t,1.9,1.10   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t TCoffee.t,1.22,1.23   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t TCoffee.t,1.23,1.24   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t/data exonerate_cdna_rev.fa, NONE, 1.1 exonerate_genomic_rev.fa, NONE, 1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-run/t/data human.genomic, NONE, 1.1 road.pep, NONE, 1.1   Jason Stajich
• [Bioperl-guts-l] Problem in installing BioPerl   Sujatha Balaji

Last message date: Fri Sep 30 23:01:15 EST 2005
Archived on: Fri Sep 30 23:29:29 EST 2005

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