December 2005 Archives by author

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Starting: Thu Dec 1 10:52:27 EST 2005
Ending: Sat Dec 31 18:59:32 EST 2005
Messages: 139

• [Bioperl-guts-l] bioperl-ext/Bio/Ext/HMM hmmlib.c,1.2,1.3   Yee Man Chan
• [Bioperl-guts-l] bioperl-live/Bio/DB/Expression - New directory   Allen Day
• [Bioperl-guts-l] bioperl-live/Bio/DB/Expression geo.pm,NONE,1.1   Allen Day
• [Bioperl-guts-l] bioperl-live/Bio/DB Expression.pm,NONE,1.1   Allen Day
• [Bioperl-guts-l] bioperl-live/Bio/Expression Contact.pm, NONE, 1.1 DataSet.pm, NONE, 1.1 Platform.pm, NONE, 1.1 Sample.pm, NONE, 1.1   Allen Day
• [Bioperl-guts-l] bioperl-live/Bio/Expression Contact.pm, 1.1, 1.2 Platform.pm, 1.1, 1.2   Allen Day
• [Bioperl-guts-l] bioperl-live/Bio/DB/Expression geo.pm,1.1,1.2   Allen Day
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO entrezgene.pm,1.15,1.16   Stefan Kirov
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO kegg.pm,1.15,1.16   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio PrimarySeqI.pm, 1.61, 1.62 SeqFeatureI.pm, 1.61, 1.62 SimpleAlign.pm, 1.97, 1.98   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Ontology DocumentRegistry.pm, 1.7, 1.8   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/DB GDB.pm,1.14,1.15   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor berkeleydb.pm, 1.20, 1.21   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor/dbi mysql.pm, 1.62, 1.63 oracle.pm, 1.6, 1.7 pg.pm, 1.15, 1.16   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Index Blast.pm, 1.18, 1.19 Hmmer.pm, 1.6, 1.7   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM ProtMatrix.pm, 1.11, 1.12 SiteMatrix.pm, 1.26, 1.27   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/PopGen/Simulation Coalescent.pm, 1.8, 1.9   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Root Storable.pm,1.5,1.6   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Generic.pm,1.93,1.94   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO agave.pm, 1.10, 1.11 bsml.pm, 1.21, 1.22 chadoxml.pm, 1.17, 1.18 chaos.pm, 1.8, 1.9   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools OddCodes.pm,1.15,1.16   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Alignment Consed.pm, 1.36, 1.37   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run RemoteBlast.pm, 1.27, 1.28   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Spidey Results.pm,1.6,1.7   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/maintenance modules.pl,1.17,1.18   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/maintenance modules.pl,1.18,1.19   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph protein.pm, NONE, 1.1   Aaron J Mackey
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph protein.pm, 1.1, 1.2   Aaron J Mackey
• [Bioperl-guts-l] bioperl-live/doc/howto/html Beginners.html, 1.7, 1.8 Feature-Annotation.html, 1.17, 1.18   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/pdf Feature-Annotation.pdf, 1.17, 1.18   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/txt Beginners.txt, 1.7, 1.8 Feature-Annotation.txt, 1.15, 1.16   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml Beginners.xml, 1.10, 1.11 Feature-Annotation.xml, 1.13, 1.14   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/html table.xsl, 1.1, 1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.86,1.87   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio SeqIO.pm,1.84,1.85   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools GuessSeqFormat.pm, 1.11, 1.12   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools pICalculator.pm,1.4,1.5   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools SeqStats.pm,1.24,1.25   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools QRNA.pm,1.2,1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools RandomDistFunctions.pm, 1.4, 1.5   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB/Flat BinarySearch.pm, 1.18, 1.19   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Primer3.pm,1.10,1.11   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Primer3.pm,1.11,1.12   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Seq PrimedSeq.pm,1.17,1.18   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Primer3.pm,1.12,1.13   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Seq PrimedSeq.pm,1.18,1.19   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools Primer3.pm,1.14,1.15   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Primer3.pm,1.13,1.14   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools Primer3.pm,1.15,1.16   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Seq PrimedSeq.pm,1.19,1.20   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB GenBank.pm,1.51,1.52   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio WebAgent.pm,1.7,1.8   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t DB.t,1.52,1.53   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t DB.t,1.53,1.54   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB GenBank.pm, 1.52, 1.53 NCBIHelper.pm, 1.39, 1.40 WebDBSeqI.pm, 1.45, 1.46   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.122,1.123   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Index Swissprot.pm,1.20,1.21   Brian Osborne
• [Bioperl-guts-l] bioperl-live/scripts/utilities mutate.PLS,1.7,1.8   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB SwissProt.pm,1.24,1.25   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO game.pm,1.34,1.35   Brian Osborne
• [Bioperl-guts-l] bioperl-ext/Bio/SeqIO/staden read.pm,1.8,1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t/data tblastn.out,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.90,1.91   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Graph/IO dip.pm,1.11,1.12   Brian Osborne
• [Bioperl-guts-l] please help urgent   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Graph/IO psi_xml.pm,1.5,1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t/data 05510.xml,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio Species.pm,1.31,1.32   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t/data sv40_small.xml, NONE, 1.1 05510.xml, 1.1, 1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t/data 05510.xml,1.2,NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.84,1.85   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Graph ProteinGraph.pm,1.25,1.26   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Graph ProteinGraph.pm,1.26,1.27   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO fasta.pm,1.21,1.22   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run StandAloneBlast.pm, 1.52, 1.53   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools OddCodes.pm,1.14,1.15   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/maintenance check_URLs.pl,NONE,1.1   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/maintenance check_URLs.pl,1.1,1.2   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools RestrictionEnzyme.pm, 1.29, 1.30   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Alignment Consed.pm, 1.37, 1.38   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein Scansite.pm, 1.10, 1.11   Torsten Seemann
• [Bioperl-guts-l] bioperl-live AUTHORS,1.43,1.44   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools pICalculator.pm,1.5,1.6   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools OddCodes.pm,1.16,1.17   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Blast Sbjct.pm,1.21,1.22   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools CodonTable.pm,1.32,1.33   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t CodonTable.t,1.18,1.19   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/maintenance check_URLs.pl,1.2,1.3   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Root Utilities.pm,1.23,1.24   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Root Utilities.pm,1.24,1.25   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Root Utilities.pm,1.25,1.26   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/t Root-Utilities.t,NONE,1.1   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run StandAloneBlast.pm, 1.53, 1.54   Torsten Seemann
• [Bioperl-guts-l] bioperl-live/Bio/Annotation Collection.pm, 1.18, 1.19   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB Taxonomy.pm,1.4,1.5   Jason Stajich
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF bulk_load_gff.PLS, 1.34, 1.35 fast_load_gff.PLS, 1.23, 1.24   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Tree Compatible.pm,1.1,1.2   Gabriel Valiente
• [Bioperl-guts-l] bioperl-live/t Compatible.t,NONE,1.1   Gabriel Valiente
• [Bioperl-guts-l] please help urgent   vijaya brahma
• [Bioperl-guts-l] [Bug 1911] New: Deep recursion when reading newick tree   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1911] Deep recursion when reading newick tree   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1911] Deep recursion when reading newick tree   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1911] Deep recursion when reading newick tree   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1911] Deep recursion when reading newick tree   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1912] New: Enable named parameters with dashes in StandAloneBlast   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1915] New: Tranditional bootstrap in newick format tree not accesible   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1915] Tranditional bootstrap in newick format tree not accesible   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1915] Tranditional bootstrap in newick format tree not accesible   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1916] New: script bp_pairwise_kaks.pl error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1916] script bp_pairwise_kaks.pl error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1916] script bp_pairwise_kaks.pl error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1917] New: Incorrect record size in Bio::DB::Flat::BinarySearch index creation   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1917] Incorrect record size in Bio::DB::Flat::BinarySearch index creation   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1916] script bp_pairwise_kaks.pl error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1916] script bp_pairwise_kaks.pl error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1918] New: Missing parameters in Bio::Tools::Run::Primer3   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1918] Missing parameters in Bio::Tools::Run::Primer3   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1918] Missing parameters in Bio::Tools::Run::Primer3   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1918] Missing parameters in Bio::Tools::Run::Primer3   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1918] Missing parameters in Bio::Tools::Run::Primer3   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1918] Missing parameters in Bio::Tools::Run::Primer3   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1916] script bp_pairwise_kaks.pl error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1916] script bp_pairwise_kaks.pl error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1911] Deep recursion when reading newick tree   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1911] Deep recursion when reading newick tree   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1911] Deep recursion when reading newick tree   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1833] Bio::Tools::Primer3 next_primer method reuses same sequence object for subsequent iterations   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1837] Bio::Ext::Align   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1405] Enhancement to Bio::DB::GenBank to allow subsequence retrieval   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1922] New: Annotation:_typemap remembers removed types   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1923] New: typo in Bio::Annotation::Collection   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1923] typo in Bio::Annotation::Collection   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1924] New: scansite   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1925] New: NC_006511.gbk, species name/classification not parsed correctly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1926] New: Missing sections in Pdoc HTML   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1927] New: mistyped ASN1   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1927] mistyped ASN1   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1927] mistyped ASN1   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1927] mistyped ASN1   bugzilla-daemon at portal.open-bio.org

Last message date: Sat Dec 31 18:59:32 EST 2005
Archived on: Sat Dec 31 18:50:58 EST 2005

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