August 2005 Archives by subject

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Starting: Mon Aug 1 05:51:52 EST 2005
Ending: Wed Aug 31 10:33:14 EST 2005
Messages: 211

• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor berkeleydb.pm, 1.17, 1.18 memory.pm, 1.39, 1.40   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor berkeleydb.pm, 1.18, 1.19   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor/dbi mysql.pm, 1.58, 1.59   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor/dbi mysql.pm, 1.59, 1.60   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/doc/howto/sgml Feature-Annotation.xml, 1.6, NONE Flat_Databases.xml, 1.2, NONE Graphics-HOWTO.xml, 1.2, NONE OBDA_Access.xml, 1.3, NONE PAML.xml, 1.3, NONE PopGen.xml, 1.5, NONE README, 1.4, NONE SearchIO.xml, 1.6, NONE SeqIO.xml, 1.9, NONE SimpleWebAnalysis.xml, 1.1, NONE Trees.xml, 1.3, NONE calstblx.dtd, 1.1, NONE dbcentx.mod, 1.1, NONE dbgenent.mod, 1.1, NONE dbhierx.mod, 1.1, NONE dbnotnx.mod, 1.1, NONE dbpoolx.mod, 1.1, NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/txt Graphics-HOWTO.txt, 1.3, 1.4 SearchIO.txt, 1.5, 1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/html param.ent, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF load_gff.PLS, 1.11, 1.12   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/common af.xml, NONE, 1.1 ar.xml, NONE, 1.1 autoidx-ng.xsl, NONE, 1.1 bg.xml, NONE, 1.1 bn.xml, NONE, 1.1 ca.xml, NONE, 1.1 common.xsl, NONE, 1.1 cs.xml, NONE, 1.1 da.xml, NONE, 1.1 de.xml, NONE, 1.1 el.xml, NONE, 1.1 en.xml, NONE, 1.1 es.xml, NONE, 1.1 et.xml, NONE, 1.1 eu.xml, NONE, 1.1 fi.xml, NONE, 1.1 fr.xml, NONE, 1.1 gentext.xsl, NONE, 1.1 he.xml, NONE, 1.1 hr.xml, NONE, 1.1 hu.xml, NONE, 1.1 id.xml, NONE, 1.1 it.xml, NONE, 1.1 ja.xml, NONE, 1.1 ko.xml, NONE, 1.1 l10n.xml, NONE, 1.1 l10n.xsl, NONE, 1.1 la.xml, NONE, 1.1 labels.xsl, NONE, 1.1 lt.xml, NONE, 1.1 nl.xml, NONE, 1.1 nn.xml, NONE, 1.1 no.xml, NONE, 1.1 olink.xsl, NONE, 1.1 pi.xsl, NONE, 1.1 pl.xml, NONE, 1.1 pt.xml, NONE, 1.1 pt_br.xml, NONE, 1.1 ro.xml, NONE, 1.1 ru.xml, NONE, 1.1 sk.xml, NONE, 1.1 sl.xml, NONE, 1.1 sr.xml, NONE, 1.1 sr_Latn.xml, NONE, 1.1 subtitles.xsl, NONE, 1.1 sv.xml, NONE, 1.1 table.xsl, NONE, 1.1 targets.xsl, NONE, 1.1 th.xml, NONE, 1.1 titles.xsl, NONE, 1.1 tr.xml, NONE, 1.1 uk.xml, NONE, 1.1 vi.xml, NONE, 1.1 xh.xml, NONE, 1.1 zh_cn.xml, NONE, 1.1 zh_t! w.xml,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/html admon.xsl, NONE, 1.1 autoidx-ng.xsl, NONE, 1.1 autoidx.xsl, NONE, 1.1 autotoc.xsl, NONE, 1.1 biblio.xsl, NONE, 1.1 block.xsl, NONE, 1.1 callout.xsl, NONE, 1.1 changebars.xsl, NONE, 1.1 chunk-code.xsl, NONE, 1.1 chunk-common.xsl, NONE, 1.1 chunk.xsl, NONE, 1.1 chunker.xsl, NONE, 1.1 chunkfast.xsl, NONE, 1.1 chunktoc.xsl, NONE, 1.1 component.xsl, NONE, 1.1 division.xsl, NONE, 1.1 docbook.xsl, NONE, 1.1 docbookng.xsl, NONE, 1.1 ebnf.xsl, NONE, 1.1 footnote.xsl, NONE, 1.1 formal.xsl, NONE, 1.1 glossary.xsl, NONE, 1.1 graphics.xsl, NONE, 1.1 html-rtf.xsl, NONE, 1.1 html.xsl, NONE, 1.1 htmltbl.xsl, NONE, 1.1 index.xsl, NONE, 1.1 info.xsl, NONE, 1.1 inline.xsl, NONE, 1.1 keywords.xsl, NONE, 1.1 lists.xsl, NONE, 1.1 maketoc.xsl, NONE, 1.1 manifest.xsl, NONE, 1.1 math.xsl, NONE, 1.1 oldchunker.xsl, NONE, 1.1 onechunk.xsl, NONE, 1.1 param.xml, NONE, 1.1 param.xsl, NONE, 1.1 param.xweb, NONE, 1.1 pi.xsl, NONE, 1.1 profile-chunk-code.xsl, NONE, 1.1 profile-chunk.xsl, NONE, 1.1 profile-docbook.xsl, NONE, 1.1 profile-onechunk.xs! l, NONE, 1.1 qandaset.xsl, NONE, 1.1 refentry.xsl, NONE, 1.1 sections.xsl, NONE, 1.1 synop.xsl, NONE, 1.1 table.xsl, NONE, 1.1 task.xsl, NONE, 1.1 titlepage.templates.xml, NONE, 1.1 titlepage.templates.xsl, NONE, 1.1 titlepage.xsl, NONE, 1.1 toc.xsl, NONE, 1.1 verbatim.xsl, NONE, 1.1 xref.xsl, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] [Bug 1643] Bio::SeqIO::genbank.pm can choke on multi-line SOURCE information   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1694] InterProParser.pm identifier   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1705] Bio::DB::GenBank and Species => parser error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1705] Bio::DB::GenBank and Species => parser error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1730] wrong residue number when loading pdb file (Bio::Structure::IO)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1754] Bio::Location::Fuzzy.pm -> SwissProt FeatureTable locationvalue error (undef values!)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1828] make test failure   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1828] make test failure   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1831] Problem running Bio::Perl::blast_sequence   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1831] Problem running Bio::Perl::blast_sequence   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1832] EMBL display_id not working correctly   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1833] New: Bio::Tools::Primer3 next_primer method reuses same sequence object for subsequent iterations   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1834] New: Patch for Bio::Tools::Lucy quality value parsing error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1834] Patch for Bio::Tools::Lucy quality value parsing error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1834] Patch for Bio::Tools::Lucy quality value parsing error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1834] Patch for Bio::Tools::Lucy quality value parsing error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1834] Patch for Bio::Tools::Lucy quality value parsing error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1834] Patch for Bio::Tools::Lucy quality value parsing error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1834] Patch for Bio::Tools::Lucy quality value parsing error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1836] New: Patch for Bio::Tools::Lucy to fix stderr file parsing bug   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1836] Patch for Bio::Tools::Lucy to fix stderr file parsing bug   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1836] Patch for Bio::Tools::Lucy to fix stderr file parsing bug   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1837] New: Bio::Ext::Align   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1840] New: "Too many open files" Error in Bio::DB::Flat::BinarySearch.pm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1842] New: PrimarySeq::length returns wrong length for translated sequence, by counting stop codon   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1842] PrimarySeq::length returns wrong length for translated sequence, by counting stop codon   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1843] New: AlignIO::psi output is wrong   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1844] New: Tree::Node and Tree:NodeI - wrong output of "height" method   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] Bioinformatics Software Development Survey   HASE
• [Bioperl-guts-l] bioperl-db/Bio/DB BioDB.pm, 1.10, 1.11 DBContextI.pm, 1.2, 1.3 SimpleDBContext.pm, 1.4, 1.5   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/Bio/DB/BioSQL OntologyAdaptor.pm, 1.3, 1.4 PathAdaptor.pm, 1.2, 1.3   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/Bio/DB/BioSQL/mysql PathAdaptorDriver.pm, 1.2, 1.3   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/Bio/DB/BioSQL/Oracle PathAdaptorDriver.pm, 1.1, 1.2   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/Bio/DB/BioSQL/Oracle PathAdaptorDriver.pm, 1.2, 1.3   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/Bio/DB/BioSQL/Pg PathAdaptorDriver.pm, 1.2, 1.3   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/Bio/DB/DBI Oracle.pm, 1.5, 1.6 Pg.pm, 1.1, 1.2 base.pm, 1.7, 1.8   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/scripts/biosql load_ontology.pl, 1.8, 1.9 load_seqdatabase.pl, 1.21, 1.22   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/t 01dbadaptor.t,1.2,1.3   Hilmar Lapp
• [Bioperl-guts-l] bioperl-db/t 12ontology.t,1.1,1.2   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live AUTHORS,1.42,1.43   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live bioscripts.pod,1.52,1.53   Brian Osborne
• [Bioperl-guts-l] bioperl-live bioscripts.pod,1.53,1.54   Jason Stajich
• [Bioperl-guts-l] bioperl-live bioscripts.pod,1.54,1.55   Brian Osborne
• [Bioperl-guts-l] bioperl-live bioscripts.pod,1.55,1.56   Jason Stajich
• [Bioperl-guts-l] bioperl-live bioscripts.pod,1.56,1.57   Jason Stajich
• [Bioperl-guts-l] bioperl-live bptutorial.pl,1.152,1.153   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio Perl.pm,1.21,1.22   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio Perl.pm,1.22,1.23   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio SearchIO.pm,1.31,1.32   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio SearchIO.pm,1.32,1.33   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio SeqIO.pm,1.81,1.82   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.87,1.88   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Align AlignI.pm,1.9,1.10   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Align DNAStatistics.pm,1.22,1.23   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Align PairwiseStatistics.pm, 1.7, 1.8   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO psi.pm,1.7,1.8   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/ClusterIO unigene.pm,1.22,1.23   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/Bio/Coordinate Result.pm,1.8,1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB Fasta.pm,1.37,1.38   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB GFF.pm,1.131,1.132   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor memory.pm, 1.40, 1.41   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor/memory feature_serializer.pm, 1.1, 1.2   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy entrez.pm,1.10,1.11   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy entrez.pm,1.7,1.8   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy entrez.pm,1.8,1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy entrez.pm,1.9,1.10   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/FeatureIO interpro.pm,1.5,1.6   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.69, 1.70 Panel.pm, 1.101, 1.102   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm, 1.85, 1.86 Panel.pm, 1.102, 1.103   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.86,1.87   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.87,1.88   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph dna.pm,1.19,1.20   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph generic.pm, 1.28, 1.29 segments.pm, 1.39, 1.40 transcript.pm, 1.18, 1.19   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph track.pm,1.8,1.9   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Index Fasta.pm,1.27,1.28   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Location Split.pm,1.37,1.38   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP BlastHSP.pm, 1.24, 1.25 FastaHSP.pm, 1.7, 1.8 GenericHSP.pm, 1.63, 1.64 HMMERHSP.pm, 1.3, 1.4 HSPFactory.pm, 1.5, 1.6 HSPI.pm, 1.32, 1.33 PSLHSP.pm, 1.1, 1.2 PsiBlastHSP.pm, 1.3, 1.4 WABAHSP.pm, 1.6, 1.7   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Search/HSP GenericHSP.pm, 1.64, 1.65   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Seq Meta.pm, 1.5, 1.6 MetaI.pm, 1.4, 1.5 Quality.pm, 1.3, 1.4   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Seq PrimedSeq.pm,1.14,1.15   Nathan Spencer Haigh
• [Bioperl-guts-l] bioperl-live/Bio/Seq SeqBuilder.pm,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Seq/Meta Array.pm,1.7,1.8   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature TypedSeqFeatureI.pm, 1.1, 1.2   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature TypedSeqFeatureI.pm, NONE, 1.1   Ewan Birney
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature/Tools Unflattener.pm, 1.31, 1.32   Chris Mungall
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO chaos.pm,1.5,1.6   Chris Mungall
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO embl.pm,1.85,1.86   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.119,1.120   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO metafasta.pm,1.2,1.3   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Taxonomy Node.pm,1.8,1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools GuessSeqFormat.pm,1.7,1.8   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Tools GuessSeqFormat.pm,1.8,1.9   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Tools ipcress.pm, 1.2, 1.3 isPcr.pm, 1.3, 1.4   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools ipcress.pm, NONE, 1.1 isPcr.pm, 1.2, 1.3   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Tools ipcress.pm,1.1,1.2   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Tools isPcr.pm,1.1,1.2   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Tools isPcr.pm,NONE,1.1   Sheldon Mckay
• [Bioperl-guts-l] bioperl-live/Bio/Tools Lucy.pm,1.7,1.8   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools Lucy.pm,1.8,1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools Lucy.pm,1.9,1.10   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools Primer3.pm,1.11,1.12   Nathan Spencer Haigh
• [Bioperl-guts-l] bioperl-live/Bio/Tools tRNAscanSE.pm,1.2,1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.30,1.31   Jason Stajich
• [Bioperl-guts-l] bioperl-live/doc/howto/html Beginners.html, 1.1, 1.2 Feature-Annotation.html, 1.6, 1.7 Flat_Databases.html, 1.3, 1.4 OBDA_Access.html, 1.6, 1.7 PAML.html, 1.4, 1.5 PopGen.html, 1.1, 1.2 README, 1.2, 1.3 SearchIO.html, 1.10, 1.11 SeqIO.html, 1.9, 1.10 SimpleWebAnalysis.html, 1.3, 1.4 Trees.html, 1.3, 1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/html Beginners.html, 1.2, 1.3 Feature-Annotation.html, 1.7, 1.8 Flat_Databases.html, 1.4, 1.5 Graphics-HOWTO.html, 1.11, 1.12 OBDA_Access.html, 1.7, 1.8 PopGen.html, 1.2, 1.3 SeqIO.html, 1.10, 1.11   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/html Graphics-HOWTO.html, 1.10, 1.11   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/html PopGen.html,1.3,1.4   Jason Stajich
• [Bioperl-guts-l] bioperl-live/doc/howto/html SearchIO.html, 1.11, 1.12   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/pdf Feature-Annotation.pdf, 1.3, 1.4 Flat_Databases.pdf, 1.2, 1.3 Graphics-HOWTO.pdf, 1.4, 1.5 OBDA_Access.pdf, 1.2, 1.3 PAML.pdf, 1.2, 1.3 PopGen.pdf, 1.2, 1.3 SearchIO.pdf, 1.5, 1.6 SeqIO.pdf, 1.5, 1.6 SimpleWebAnalysis.pdf, 1.2, 1.3 Trees.pdf, 1.3, 1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/pdf Feature-Annotation.pdf, 1.4, 1.5 Flat_Databases.pdf, 1.3, 1.4 Graphics-HOWTO.pdf, 1.5, 1.6 OBDA_Access.pdf, 1.3, 1.4 PAML.pdf, 1.3, 1.4 PopGen.pdf, 1.3, 1.4 SearchIO.pdf, 1.6, 1.7 SeqIO.pdf, 1.6, 1.7 SimpleWebAnalysis.pdf, 1.3, 1.4 Trees.pdf, 1.4, 1.5   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/pdf Feature-Annotation.pdf, 1.5, 1.6 Flat_Databases.pdf, 1.4, 1.5 Graphics-HOWTO.pdf, 1.6, 1.7 OBDA_Access.pdf, 1.4, 1.5 PAML.pdf, 1.4, 1.5 PopGen.pdf, 1.4, 1.5 SearchIO.pdf, 1.7, 1.8 SeqIO.pdf, 1.7, 1.8 SimpleWebAnalysis.pdf, 1.4, 1.5 Trees.pdf, 1.5, 1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/pdf PopGen.pdf,1.5,1.6   Jason Stajich
• [Bioperl-guts-l] bioperl-live/doc/howto/pdf README,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/sgml Beginners.xml, 1.37, 1.38   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/sgml Beginners.xml, 1.38, 1.39   Jason Stajich
• [Bioperl-guts-l] bioperl-live/doc/howto/sgml Beginners.xml, 1.39, 1.40   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/sgml Beginners.xml, 1.40, 1.41 SearchIO.xml, 1.5, 1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/sgml Beginners.xml, 1.41, 1.42   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/sgml Beginners.xml, 1.42, NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/sgml docbookx.dtd, 1.1, NONE entities.xml, 1.2, NONE global.xml, 1.2, NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/sgml SearchIO.xml, 1.4, 1.5 SeqIO.xml, 1.8, 1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/sgml/ent iso-amsa.ent, 1.1, NONE iso-amsb.ent, 1.1, NONE iso-amsc.ent, 1.1, NONE iso-amsn.ent, 1.1, NONE iso-amso.ent, 1.1, NONE iso-amsr.ent, 1.1, NONE iso-box.ent, 1.1, NONE iso-cyr1.ent, 1.1, NONE iso-cyr2.ent, 1.1, NONE iso-dia.ent, 1.1, NONE iso-grk1.ent, 1.1, NONE iso-grk2.ent, 1.1, NONE iso-grk3.ent, 1.1, NONE iso-grk4.ent, 1.1, NONE iso-lat1.ent, 1.1, NONE iso-lat2.ent, 1.1, NONE iso-num.ent, 1.1, NONE iso-pub.ent, 1.1, NONE iso-tech.ent, 1.1, NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/sgml/stylesheet e-novative.xsl, 1.2, NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/txt Beginners.txt, 1.1, 1.2 Feature-Annotation.txt, 1.4, 1.5 Flat_Databases.txt, 1.2, 1.3 Graphics-HOWTO.txt, 1.2, 1.3 OBDA_Access.txt, 1.2, 1.3 PAML.txt, 1.2, 1.3 SearchIO.txt, 1.4, 1.5 SeqIO.txt, 1.3, 1.4 SimpleWebAnalysis.txt, 1.2, 1.3 Trees.txt, 1.3, 1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/txt Beginners.txt, 1.2, 1.3 Feature-Annotation.txt, 1.5, 1.6 Flat_Databases.txt, 1.3, 1.4 Graphics-HOWTO.txt, 1.4, 1.5 OBDA_Access.txt, 1.3, 1.4 SeqIO.txt, 1.4, 1.5   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/txt PopGen.txt,1.1,1.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/doc/howto/txt PopGen.txt,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml Beginners.xml, 1.1, 1.2 Feature-Annotation.xml, 1.1, 1.2 Flat_Databases.xml, 1.1, 1.2 Graphics-HOWTO.xml, 1.1, 1.2 OBDA_Access.xml, 1.1, 1.2 PopGen.xml, 1.1, 1.2 SeqIO.xml, 1.1, 1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml Beginners.xml, 1.2, 1.3 Feature-Annotation.xml, 1.2, 1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml Beginners.xml, NONE, 1.1 Feature-Annotation.xml, NONE, 1.1 Flat_Databases.xml, NONE, 1.1 Graphics-HOWTO.xml, NONE, 1.1 OBDA_Access.xml, NONE, 1.1 PAML.xml, NONE, 1.1 PopGen.xml, NONE, 1.1 README, NONE, 1.1 SearchIO.xml, NONE, 1.1 SeqIO.xml, NONE, 1.1 SimpleWebAnalysis.xml, NONE, 1.1 Trees.xml, NONE, 1.1 calstblx.dtd, NONE, 1.1 dbcentx.mod, NONE, 1.1 dbgenent.mod, NONE, 1.1 dbhierx.mod, NONE, 1.1 dbnotnx.mod, NONE, 1.1 dbpoolx.mod, NONE, 1.1 docbook-tx.sh, NONE, 1.1 docbookx.dtd, NONE, 1.1 entities.xml, NONE, 1.1 global.xml, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml Beginners.xml,1.3,1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml docbook-tx.sh,1.1,NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml PopGen.xml,1.2,1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/doc/howto/xml README,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml README,1.2,1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml README,1.3,1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml SearchIO.xml,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml SearchIO.xml,1.2,1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/ent - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/ent iso-amsa.ent, NONE, 1.1 iso-amsb.ent, NONE, 1.1 iso-amsc.ent, NONE, 1.1 iso-amsn.ent, NONE, 1.1 iso-amso.ent, NONE, 1.1 iso-amsr.ent, NONE, 1.1 iso-box.ent, NONE, 1.1 iso-cyr1.ent, NONE, 1.1 iso-cyr2.ent, NONE, 1.1 iso-dia.ent, NONE, 1.1 iso-grk1.ent, NONE, 1.1 iso-grk2.ent, NONE, 1.1 iso-grk3.ent, NONE, 1.1 iso-grk4.ent, NONE, 1.1 iso-lat1.ent, NONE, 1.1 iso-lat2.ent, NONE, 1.1 iso-num.ent, NONE, 1.1 iso-pub.ent, NONE, 1.1 iso-tech.ent, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/stylesheet e-novative.xsl~, 1.1, NONE e-novative_article.xsl~, 1.1, NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/stylesheet - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/stylesheet custom.xsl, NONE, 1.1 custom_article_chunk.xsl, NONE, 1.1 custom_article_fo.xsl, NONE, 1.1 custom_article_html.xsl, NONE, 1.1 custom_article_htmlhelp.xsl, NONE, 1.1 custom_book_chunk.xsl, NONE, 1.1 custom_book_fo.xsl, NONE, 1.1 custom_book_html.xsl, NONE, 1.1 custom_book_htmlhelp.xsl, NONE, 1.1 e-novative.xsl, NONE, 1.1 e-novative.xsl~, NONE, 1.1 e-novative_article.css, NONE, 1.1 e-novative_article.xsl, NONE, 1.1 e-novative_article.xsl~, NONE, 1.1 e-novative_article_chunk.xsl, NONE, 1.1 e-novative_article_fo.xsl, NONE, 1.1 e-novative_article_html.xsl, NONE, 1.1 e-novative_article_htmlhelp.xsl, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl VERSION,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/common - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/common l10n.dtd, NONE, 1.1 targetdatabase.dtd, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/fo - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/fo admon.xsl, NONE, 1.1 autoidx-ng.xsl, NONE, 1.1 autoidx.xsl, NONE, 1.1 autotoc.xsl, NONE, 1.1 axf.xsl, NONE, 1.1 biblio.xsl, NONE, 1.1 block.xsl, NONE, 1.1 callout.xsl, NONE, 1.1 component.xsl, NONE, 1.1 division.xsl, NONE, 1.1 docbook.xsl, NONE, 1.1 docbookng.xsl, NONE, 1.1 ebnf.xsl, NONE, 1.1 fo-rtf.xsl, NONE, 1.1 fo.xsl, NONE, 1.1 footnote.xsl, NONE, 1.1 fop.xsl, NONE, 1.1 formal.xsl, NONE, 1.1 glossary.xsl, NONE, 1.1 graphics.xsl, NONE, 1.1 htmltbl.xsl, NONE, 1.1 index.xsl, NONE, 1.1 info.xsl, NONE, 1.1 inline.xsl, NONE, 1.1 keywords.xsl, NONE, 1.1 lists.xsl, NONE, 1.1 math.xsl, NONE, 1.1 pagesetup.xsl, NONE, 1.1 param.ent, NONE, 1.1 param.xsl, NONE, 1.1 param.xweb, NONE, 1.1 passivetex.xsl, NONE, 1.1 pi.xsl, NONE, 1.1 profile-docbook.xsl, NONE, 1.1 qandaset.xsl, NONE, 1.1 refentry.xsl, NONE, 1.1 sections.xsl, NONE, 1.1 synop.xsl, NONE, 1.1 table.xsl, NONE, 1.1 task.xsl, NONE, 1.1 titlepage.templates.xsl, NONE, 1.1 titlepage.xsl, NONE, 1.1 toc.xsl, NONE, 1.1 verbatim.xsl, NONE, 1.1 xep.xsl, NONE, 1.1 xref.xsl, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/fo pdf2index, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/html - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/lib - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/lib lib.xml, NONE, 1.1 lib.xsl, NONE, 1.1 lib.xweb, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/profiling profile-mode.xsl, NONE, 1.1 profile.xsl, NONE, 1.1 strip-attributes.xsl, NONE, 1.1 xsl2profile.xsl, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/profiling - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/xhtml - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/xhtml admon.xsl, NONE, 1.1 autoidx-ng.xsl, NONE, 1.1 autoidx.xsl, NONE, 1.1 autotoc.xsl, NONE, 1.1 biblio.xsl, NONE, 1.1 block.xsl, NONE, 1.1 callout.xsl, NONE, 1.1 changebars.xsl, NONE, 1.1 chunk-code.xsl, NONE, 1.1 chunk-common.xsl, NONE, 1.1 chunk.xsl, NONE, 1.1 chunker.xsl, NONE, 1.1 chunkfast.xsl, NONE, 1.1 chunktoc.xsl, NONE, 1.1 component.xsl, NONE, 1.1 division.xsl, NONE, 1.1 docbook.xsl, NONE, 1.1 docbookng.xsl, NONE, 1.1 ebnf.xsl, NONE, 1.1 footnote.xsl, NONE, 1.1 formal.xsl, NONE, 1.1 glossary.xsl, NONE, 1.1 graphics.xsl, NONE, 1.1 html-rtf.xsl, NONE, 1.1 html.xsl, NONE, 1.1 html2xhtml.xsl, NONE, 1.1 htmltbl.xsl, NONE, 1.1 index.xsl, NONE, 1.1 info.xsl, NONE, 1.1 inline.xsl, NONE, 1.1 keywords.xsl, NONE, 1.1 lists.xsl, NONE, 1.1 maketoc.xsl, NONE, 1.1 manifest.xsl, NONE, 1.1 math.xsl, NONE, 1.1 oldchunker.xsl, NONE, 1.1 onechunk.xsl, NONE, 1.1 param.xsl, NONE, 1.1 pi.xsl, NONE, 1.1 profile-chunk-code.xsl, NONE, 1.1 profile-chunk.xsl, NONE, 1.1 profile-docbook.xsl, NONE, 1.1 profile-onechunk.xsl, NONE, 1.1 qan! daset.xsl, NONE, 1.1 refentry.xsl, NONE, 1.1 sections.xsl, NONE, 1.1 synop.xsl, NONE, 1.1 table.xsl, NONE, 1.1 task.xsl, NONE, 1.1 titlepage.templates.xsl, NONE, 1.1 titlepage.xsl, NONE, 1.1 toc.xsl, NONE, 1.1 verbatim.xsl, NONE, 1.1 xref.xsl, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/xsl/xhtml graphics.xsl, 1.1, 1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF bulk_load_gff.PLS, 1.30, 1.31   Scott Cain
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF bulk_load_gff.PLS, 1.31, 1.32 fast_load_gff.PLS, 1.21, 1.22   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/biographics bp_glyphs1-demo.PLS, NONE, 1.1   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/index bp_seqret.PLS, NONE, 1.1 TAG, 1.1, 1.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/scripts/index bp_seqret.PLS,1.1,1.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/scripts/index bp_seqret.PLS,1.2,1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-live/scripts/seq seqconvert.PLS,1.4,1.5   Chris Mungall
• [Bioperl-guts-l] bioperl-live/scripts/taxa classify_hits_kingdom.PLS, 1.1, 1.2   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/scripts/taxa classify_hits_kingdom.PLS, NONE, 1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/scripts/taxa query_entrez_taxa.PLS, NONE, 1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t BioDBGFF.t,1.38,1.39   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/t bsml_sax.t,1.1,1.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t DB.t,1.49,1.50   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Index.t,1.38,1.39   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t interpro.t,1.1,1.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t MetaSeq.t,1.4,1.5   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t MultiFile.t, NONE, 1.1 ace.t, NONE, 1.1 bsml_sax.t, NONE, 1.1 embl.t, NONE, 1.1 gcg.t, NONE, 1.1 genbank.t, NONE, 1.1 interpro.t, NONE, 1.1 kegg.t, NONE, 1.1 pir.t, NONE, 1.1 SeqIO.t, 1.97, 1.98 Swiss.t, 1.4, 1.5   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t primer3.t,1.7,1.8   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.88,1.89   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t SeqFeatCollection.t,1.10,1.11   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t SeqIO.t,1.92,1.93   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t SeqIO.t,1.93,1.94   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t SeqIO.t,1.94,1.95   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t SeqIO.t,1.95,1.96   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t SeqIO.t,1.96,1.97   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t SeqIO.t,1.98,1.99   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Species.t,1.7,1.8   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t Swiss.t,1.5,NONE   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t swiss.t,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Taxonomy.t,1.5,1.6   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t TreeIO.t,1.30,1.31   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t UniGene.t,1.15,1.16   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/t Variation_IO.t,1.16,1.17   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t/data BEL16-LTR_AG.embl,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t/data cysprot1b.newick,1.1,1.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t/data DQ018368.gb,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t/data NC_006346.gb,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t/data U71225.gb,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t/data unigene.data,1.7,1.8   Hilmar Lapp
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/PiseApplication seqgen.pm, 1.3, 1.4   Catherine Letondal
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/PiseApplication seqgen.pm, 1.4, 1.5   Catherine Letondal
• [Bioperl-guts-l] BLAST description line parsing   Rafi Ahmad

Last message date: Wed Aug 31 10:33:14 EST 2005
Archived on: Wed Aug 31 11:21:48 EST 2005

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