<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="font-family: Verdana, Arial, Helvetica, sans-serif; color: rgb(102, 102, 102); font-size: 11px; "><p><h2 style="font-family: Verdana, Arial, Helvetica, sans-serif; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 14px; font-weight: bold; "><span class="Apple-style-span" style="font-size: 11px; font-weight: normal; ">[For those who may not have seen it, I'm copying this official announcement from the OBF News blog. Here's the link: <a href="http://news.open-bio.org/news/2010/05/bioperl-has-moved-to-github/">http://news.open-bio.org/news/2010/05/bioperl-has-moved-to-github/</a> - Dave]</span></h2><div><br></div><h2 style="font-family: Verdana, Arial, Helvetica, sans-serif; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 14px; font-weight: bold; "><br></h2><h2 style="font-family: Verdana, Arial, Helvetica, sans-serif; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 14px; font-weight: bold; "><a href="http://news.open-bio.org/news/2010/05/bioperl-has-moved-to-github/" rel="bookmark" title="Permanent Link: BioPerl has moved to GitHub" style="text-decoration: underline; color: rgb(65, 146, 229); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-width: initial; border-color: initial; ">BioPerl has moved to GitHub</a></h2><div><br></div></p><p><abbr title="2010-05-14T00:18:33+0000">May 14, 2010 – 12:18 am</abbr> by Chris Fields</p><p>BioPerl has migrated to <a href="http://git-scm.com/" style="text-decoration: none; color: rgb(0, 102, 153); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; ">git</a> and <a href="http://github.com/bioperl" style="text-decoration: none; color: rgb(0, 102, 153); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; ">GitHub</a>! We have also set up a mirror set of several key repositories at the great public git hosting site<a href="http://repo.or.cz/w" style="text-decoration: none; color: rgb(0, 102, 153); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; "> repo.or.cz</a>.</p><p>If you are a current BioPerl developer (had a previous account for direct access to our prior Subversion repository), please sign up for a GitHub account and let us know your user ID. Also, add the extra email <a href="http://news.open-bio.org/news/wp-content/uploads/2010/05/generic.jpg" style="text-decoration: none; color: rgb(0, 102, 153); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; "><img class="alignnone size-full wp-image-703" alt="" width="137" height="15" id="6a387a67-92c2-42be-aaa8-03cd12a7b330" apple-width="yes" apple-height="yes" src="cid:211FF7A0-B317-413A-ADEA-F14324006837@lan"></a> (where ‘DEVNAME’ is your <strong>original Subversion account ID</strong>). This should map any previous commits from the older Subversion and CVS repository to your new GitHub account.</p><p>The following are ways everyone can download the latest code.</p><h2 style="font-family: Verdana, Arial, Helvetica, sans-serif; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 14px; font-weight: bold; ">Using git</h2><p>Note you can replace ‘bioperl-live.git’ with any of the repository names (bioperl-db, bioperl-run, etc). For BioPerl developers (GitHub collaborators) you have a choice of SSH or HTTP:</p><pre><span style="font-family: Consolas, Monaco, 'Courier New', Courier, monospace; line-height: 18px; font-size: 12px; "> git clone git@github.com:bioperl/bioperl-live.git</span></pre><pre><span style="font-family: Consolas, Monaco, 'Courier New', Courier, monospace; line-height: 18px; font-size: 12px; "> git clone <a href="https://bioperl@github.com/bioperl/bioperl-live.git">https://bioperl@github.com/bioperl/bioperl-live.git</a></span></pre><p>The open read-only link (for everyone):</p><pre> git clone <a href="git://github.com/bioperl/bioperl-live.git">git://github.com/bioperl/bioperl-live.git</a></pre><p>or using the mirror site:</p><pre><code> git clone <a href="git://repo.or.cz/bioperl-live.git">git://repo.or.cz/bioperl-live.git</a></code></pre><h2 style="font-family: Verdana, Arial, Helvetica, sans-serif; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 14px; font-weight: bold; ">Using SVN (read-only)</h2><p>We will also support read-only access to GitHub with Subversion. We may allow write support at some later point. To use svn:</p><pre> svn checkout <a href="http://svn.github.com/schacon/simplegit.git">http://svn.github.com/schacon/simplegit.git</a></pre><h2 style="font-family: Verdana, Arial, Helvetica, sans-serif; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 14px; font-weight: bold; ">Direct downloads</h2><p>Tagged releases can be found here:</p><p><a href="http://github.com/bioperl/bioperl-live/downloads" style="text-decoration: none; color: rgb(0, 102, 153); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; ">http://github.com/bioperl/bioperl-live/downloads</a></p><p>The latest source code here:</p><p><a href="http://github.com/bioperl/bioperl-live/archives/master" style="text-decoration: none; color: rgb(0, 102, 153); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; ">http://github.com/bioperl/bioperl-live/archives/master</a></p><h2 style="font-family: Verdana, Arial, Helvetica, sans-serif; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 14px; font-weight: bold; "><strong>Forking BioPerl and Pull Requests</strong></h2><p>We intend on using git and GitHub to their fullest. With that in mind, we encourage users to <a href="http://help.github.com/forking/" style="text-decoration: none; color: rgb(0, 102, 153); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; ">fork</a>BioPerl code, make changes, commit them to your forked repository, and submit <a href="http://github.com/guides/pull-requests" style="text-decoration: none; color: rgb(0, 102, 153); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; ">pull requests</a>.</p><h2 style="font-family: Verdana, Arial, Helvetica, sans-serif; padding-top: 0px; padding-right: 0px; padding-bottom: 0px; padding-left: 0px; margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 14px; font-weight: bold; ">Documentation</h2><p>We’re also in the process of updating our local developer documents for help with those who haven’t used git before. In particular, we have a <a href="http://www.bioperl.org/wiki/Using_Git" style="text-decoration: none; color: rgb(0, 102, 153); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; ">Using Git</a> page, and have added <a href="http://www.bioperl.org/wiki/Tracking_Git_commits" style="text-decoration: none; color: rgb(0, 102, 153); border-top-style: none; border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; ">RSS feeds</a> for our repository commits.</p><p>Enjoy!</p><p>chris</p></span></body></html>