From pjotr.public14 at thebird.nl Tue Jan 19 09:39:02 2010 From: pjotr.public14 at thebird.nl (Pjotr Prins) Date: Tue, 19 Jan 2010 15:39:02 +0100 Subject: [BioLib-dev] EMBOSS mapping in Biolib Message-ID: <20100119143902.GA2830@thebird.nl> Hi All, I finally have an OSX machine for testing! Already did some fixing for R on OSX. Hope to move forward in the coming weeks. Pj. From pjotr.public14 at thebird.nl Mon Jan 25 12:46:49 2010 From: pjotr.public14 at thebird.nl (Pjotr Prins) Date: Mon, 25 Jan 2010 18:46:49 +0100 Subject: [BioLib-dev] Towards a release Message-ID: <20100125174649.GA30614@thebird.nl> I have a Mac Mini now - which really helps with the OSX builds :). I have updated Staden io_lib to the latest release. EMBOSS is recent. Build for Perl: git clone http://github.com/pjotrp/biolib.git cd biolib ./configure make make test Should be OK on Linux and OSX. You can install make install and uninstall sh scripts/uninstall.sh I am fixing the Cygwin version, and will upgrade Affyio. Next is generating some documentation and we should announce biolib-perl-1.0. Other modules follow after that. Please test. Pj. From cjfields at illinois.edu Tue Jan 26 13:14:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 26 Jan 2010 12:14:48 -0600 Subject: [BioLib-dev] Towards a release In-Reply-To: <20100125174649.GA30614@thebird.nl> References: <20100125174649.GA30614@thebird.nl> Message-ID: <1264529688.16206.4.camel@cjfields.igb.uiuc.edu> Pjotr, I'll start testing on Ubuntu and Mac OS X 10.6. Will let you know how it progresses. chris On Mon, 2010-01-25 at 18:46 +0100, Pjotr Prins wrote: > I have a Mac Mini now - which really helps with the OSX builds :). > > I have updated Staden io_lib to the latest release. EMBOSS is recent. > > Build for Perl: > > git clone http://github.com/pjotrp/biolib.git > cd biolib > ./configure > make > make test > > Should be OK on Linux and OSX. You can install > > make install > > and uninstall > > sh scripts/uninstall.sh > > I am fixing the Cygwin version, and will upgrade Affyio. Next is > generating some documentation and we should announce biolib-perl-1.0. > > Other modules follow after that. > > Please test. > > Pj. > > _______________________________________________ > BioLib-dev mailing list > BioLib-dev at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biolib-dev From pjotr.public14 at thebird.nl Wed Jan 27 11:12:30 2010 From: pjotr.public14 at thebird.nl (Pjotr Prins) Date: Wed, 27 Jan 2010 17:12:30 +0100 Subject: [BioLib-dev] Towards a release In-Reply-To: <1264529688.16206.4.camel@cjfields.igb.uiuc.edu> References: <20100125174649.GA30614@thebird.nl> <1264529688.16206.4.camel@cjfields.igb.uiuc.edu> Message-ID: <20100127161230.GA30242@thebird.nl> Please test. It is critical we have some wider testing. All Unices should work for Perl. I have just updated the Affyio module. I am looking into generating the documentation and Steffen Moeller has started on a Debian package where we will link against external BOOST and EMBOSS packages. Pj. On Tue, Jan 26, 2010 at 12:14:48PM -0600, Chris Fields wrote: > Pjotr, > > I'll start testing on Ubuntu and Mac OS X 10.6. Will let you know how > it progresses. > > chris > > On Mon, 2010-01-25 at 18:46 +0100, Pjotr Prins wrote: > > I have a Mac Mini now - which really helps with the OSX builds :). > > > > I have updated Staden io_lib to the latest release. EMBOSS is recent. > > > > Build for Perl: > > > > git clone http://github.com/pjotrp/biolib.git > > cd biolib > > ./configure > > make > > make test > > > > Should be OK on Linux and OSX. You can install > > > > make install > > > > and uninstall > > > > sh scripts/uninstall.sh > > > > I am fixing the Cygwin version, and will upgrade Affyio. Next is > > generating some documentation and we should announce biolib-perl-1.0. > > > > Other modules follow after that. > > > > Please test. > > > > Pj. > > > > _______________________________________________ > > BioLib-dev mailing list > > BioLib-dev at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/biolib-dev > > From pjotr.public14 at thebird.nl Tue Jan 19 14:39:02 2010 From: pjotr.public14 at thebird.nl (Pjotr Prins) Date: Tue, 19 Jan 2010 15:39:02 +0100 Subject: [BioLib-dev] EMBOSS mapping in Biolib Message-ID: <20100119143902.GA2830@thebird.nl> Hi All, I finally have an OSX machine for testing! Already did some fixing for R on OSX. Hope to move forward in the coming weeks. Pj. From pjotr.public14 at thebird.nl Mon Jan 25 17:46:49 2010 From: pjotr.public14 at thebird.nl (Pjotr Prins) Date: Mon, 25 Jan 2010 18:46:49 +0100 Subject: [BioLib-dev] Towards a release Message-ID: <20100125174649.GA30614@thebird.nl> I have a Mac Mini now - which really helps with the OSX builds :). I have updated Staden io_lib to the latest release. EMBOSS is recent. Build for Perl: git clone http://github.com/pjotrp/biolib.git cd biolib ./configure make make test Should be OK on Linux and OSX. You can install make install and uninstall sh scripts/uninstall.sh I am fixing the Cygwin version, and will upgrade Affyio. Next is generating some documentation and we should announce biolib-perl-1.0. Other modules follow after that. Please test. Pj. From cjfields at illinois.edu Tue Jan 26 18:14:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 26 Jan 2010 12:14:48 -0600 Subject: [BioLib-dev] Towards a release In-Reply-To: <20100125174649.GA30614@thebird.nl> References: <20100125174649.GA30614@thebird.nl> Message-ID: <1264529688.16206.4.camel@cjfields.igb.uiuc.edu> Pjotr, I'll start testing on Ubuntu and Mac OS X 10.6. Will let you know how it progresses. chris On Mon, 2010-01-25 at 18:46 +0100, Pjotr Prins wrote: > I have a Mac Mini now - which really helps with the OSX builds :). > > I have updated Staden io_lib to the latest release. EMBOSS is recent. > > Build for Perl: > > git clone http://github.com/pjotrp/biolib.git > cd biolib > ./configure > make > make test > > Should be OK on Linux and OSX. You can install > > make install > > and uninstall > > sh scripts/uninstall.sh > > I am fixing the Cygwin version, and will upgrade Affyio. Next is > generating some documentation and we should announce biolib-perl-1.0. > > Other modules follow after that. > > Please test. > > Pj. > > _______________________________________________ > BioLib-dev mailing list > BioLib-dev at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biolib-dev From pjotr.public14 at thebird.nl Wed Jan 27 16:12:30 2010 From: pjotr.public14 at thebird.nl (Pjotr Prins) Date: Wed, 27 Jan 2010 17:12:30 +0100 Subject: [BioLib-dev] Towards a release In-Reply-To: <1264529688.16206.4.camel@cjfields.igb.uiuc.edu> References: <20100125174649.GA30614@thebird.nl> <1264529688.16206.4.camel@cjfields.igb.uiuc.edu> Message-ID: <20100127161230.GA30242@thebird.nl> Please test. It is critical we have some wider testing. All Unices should work for Perl. I have just updated the Affyio module. I am looking into generating the documentation and Steffen Moeller has started on a Debian package where we will link against external BOOST and EMBOSS packages. Pj. On Tue, Jan 26, 2010 at 12:14:48PM -0600, Chris Fields wrote: > Pjotr, > > I'll start testing on Ubuntu and Mac OS X 10.6. Will let you know how > it progresses. > > chris > > On Mon, 2010-01-25 at 18:46 +0100, Pjotr Prins wrote: > > I have a Mac Mini now - which really helps with the OSX builds :). > > > > I have updated Staden io_lib to the latest release. EMBOSS is recent. > > > > Build for Perl: > > > > git clone http://github.com/pjotrp/biolib.git > > cd biolib > > ./configure > > make > > make test > > > > Should be OK on Linux and OSX. You can install > > > > make install > > > > and uninstall > > > > sh scripts/uninstall.sh > > > > I am fixing the Cygwin version, and will upgrade Affyio. Next is > > generating some documentation and we should announce biolib-perl-1.0. > > > > Other modules follow after that. > > > > Please test. > > > > Pj. > > > > _______________________________________________ > > BioLib-dev mailing list > > BioLib-dev at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/biolib-dev > >