From hdilley at sutrobio.com Wed Jan 2 13:49:32 2013 From: hdilley at sutrobio.com (Hara Dilley) Date: Wed, 2 Jan 2013 18:49:32 +0000 Subject: [Biojava-l] inserting a sequence into a .gb template and creating a new .gb file. Message-ID: Hi I am interested in creating .gb files by providing a vector template, and a fasta file with a list of "insert" sequences. For each sequence in this file I would like to create a new GenBank file by inserting the sequence in the template. Is this something I can do with BioJava? Any examples? Thanks Hara ________________________________ This email and any attachments thereto may contain private, confidential, and privileged material for the sole use of the intended recipient. Any review, copying, or distribution of this email (or any attachments thereto) by others is strictly prohibited. If you are not the intended recipient, please contact the sender immediately and permanently delete the original and any copies of this email and any attachments thereto. From andreas at sdsc.edu Tue Jan 8 18:52:21 2013 From: andreas at sdsc.edu (Andreas Prlic) Date: Tue, 8 Jan 2013 15:52:21 -0800 Subject: [Biojava-l] download biojava3-aa-prop3.0.5-sources.jar : 404 In-Reply-To: References: Message-ID: Hi, sorry for the slow response, just back from a two week vacation... Thanks for spotting this. There was a typo in the URL, should be fixed now. Andreas On Tue, Dec 25, 2012 at 1:52 PM, INTERLICHTSPIELHAUS < interlichtspielhaus at gmail.com> wrote: > hi > > the sources jar biojava3-aa-prop3.0.5-sources.jar doesn't seem to be in the > right spot: > http://biojava.org/wiki/BioJava:Download > > The requested URL > > /download/maven/org/biojava/biojava3-aa-prop/3.0.5/biojava3-aa-prop3.0.5-sources.jar > was not found on this server. > > regards > inS > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > From hdilley at sutrobio.com Wed Jan 2 18:49:32 2013 From: hdilley at sutrobio.com (Hara Dilley) Date: Wed, 2 Jan 2013 18:49:32 +0000 Subject: [Biojava-l] inserting a sequence into a .gb template and creating a new .gb file. Message-ID: Hi I am interested in creating .gb files by providing a vector template, and a fasta file with a list of "insert" sequences. For each sequence in this file I would like to create a new GenBank file by inserting the sequence in the template. Is this something I can do with BioJava? Any examples? Thanks Hara ________________________________ This email and any attachments thereto may contain private, confidential, and privileged material for the sole use of the intended recipient. Any review, copying, or distribution of this email (or any attachments thereto) by others is strictly prohibited. If you are not the intended recipient, please contact the sender immediately and permanently delete the original and any copies of this email and any attachments thereto. From andreas at sdsc.edu Tue Jan 8 23:52:21 2013 From: andreas at sdsc.edu (Andreas Prlic) Date: Tue, 8 Jan 2013 15:52:21 -0800 Subject: [Biojava-l] download biojava3-aa-prop3.0.5-sources.jar : 404 In-Reply-To: References: Message-ID: Hi, sorry for the slow response, just back from a two week vacation... Thanks for spotting this. There was a typo in the URL, should be fixed now. Andreas On Tue, Dec 25, 2012 at 1:52 PM, INTERLICHTSPIELHAUS < interlichtspielhaus at gmail.com> wrote: > hi > > the sources jar biojava3-aa-prop3.0.5-sources.jar doesn't seem to be in the > right spot: > http://biojava.org/wiki/BioJava:Download > > The requested URL > > /download/maven/org/biojava/biojava3-aa-prop/3.0.5/biojava3-aa-prop3.0.5-sources.jar > was not found on this server. > > regards > inS > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l >