From markjschreiber at gmail.com Sat Nov 1 00:11:19 2008 From: markjschreiber at gmail.com (Mark Schreiber) Date: Sat, 1 Nov 2008 12:11:19 +0800 Subject: [Biojava-l] How to get full query description from blast result In-Reply-To: References: <93b45ca50810310100w5e922161iaf79469050afbc3c@mail.gmail.com> Message-ID: <93b45ca50810312111hb861857qa121962498ef82c6@mail.gmail.com> Hi - You could make a request for improvement in the bugzilla system (that way we can track if it ever gets done). Alternatively if you post to the list some alternative code for the method that would be great. - Mark On Fri, Oct 31, 2008 at 8:07 PM, David Toomey wrote: > Hi Mark > > I tried that and it appears that it is not being parsed. Only the portion of the line up to the first space is returned as queryId. The rest of the line is not returned. > Could this be added to the blast parser? > > Cheers > > Dave > > > -----Original Message----- > From: Mark Schreiber [mailto:markjschreiber at gmail.com] > Sent: 31 October 2008 08:01 > To: holland at eaglegenomics.com > Cc: David Toomey; biojava-l at biojava.org > Subject: Re: [Biojava-l] How to get full query description from blast result > > Hi - > > If you use the BlastEcho program on the cookbook pages you can find > out if and how the information is being parsed and where it goes. > > It is possible it is not parsed. In this case you could add a feature request. > > - Mark > > On Thu, Oct 30, 2008 at 10:10 PM, Richard Holland > wrote: >> >> Good question! >> >> Can someone who knows a lot about the blast parser internals provide >> David with an answer to his question? >> >> cheers, >> Richard >> >> 2008/10/29 David Toomey : >> > Hi >> > >> > I am parsing blast results and I need to get the complete query description line but I can only work out how to get the first part of the line. So for example in the blast result query >> > >> > Query= sp|Q8I5D2|ABRA_PLAF7 101 kDa malaria antigen OS=Plasmodium >> > falciparum (isolate 3D7) GN=ABRA >> > >> > I need to get all of the description above but I can only seem to retrieve the first part 'sp|Q8I5D2|ABRA_PLAF7' which I get from the queryId property of the annotation >> > >> > Can anyone point me in the right direction for retrieving the complete query description? >> > >> > Thanks >> > >> > Dave >> > >> > >> > _______________________________________________ >> > Biojava-l mailing list - Biojava-l at lists.open-bio.org >> > http://lists.open-bio.org/mailman/listinfo/biojava-l >> > >> >> >> >> -- >> Richard Holland, BSc MBCS >> Finance Director, Eagle Genomics Ltd >> M: +44 7500 438846 | E: holland at eaglegenomics.com >> http://www.eaglegenomics.com/ >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l > From gabrielle_doan at gmx.net Mon Nov 3 09:48:45 2008 From: gabrielle_doan at gmx.net (Gabrielle Doan) Date: Mon, 03 Nov 2008 15:48:45 +0100 Subject: [Biojava-l] differences between read in sequence and stored sequence in database] In-Reply-To: References: <49072127.7010304@gmx.net> Message-ID: <490F0F4D.3090100@gmx.net> Hi all, I've changed the regular expression in org.biojavax.bio.seq.io.GenbankFormat from protected static final Pattern sectp = Pattern.compile("^(\\s{0,8}(\\S+)\\s{1,7}(.*)|\\s{21}(/\\S+?)=(.*)|\\s{21}(/\\S+))$"); <\code> to protected static final Pattern sectp = Pattern.compile("^(\\s{0,8}([A-Za-z]+)\\s{1,7}(.*)|\\s{21}(/\\S+?)=(.*)|\\s{21}(/\\S+))$"); <\code> like in BioRuby (http://cvs.biojava.org/cgi-bin/viewcvs/viewcvs.cgi/bioruby/lib/bio/db.rb.diff?r1=0.24&r2=0.25&cvsroot=bioruby). But than features like D-loop can't be detected. So this is not the solution for my problem. The reason for the truncation is readSection(BufferedReader br) in org.biojavax.bio.seq.io.GenbankFormat. if (line==null || line.length()==0 || (!line.startsWith(" ") && linecount++>0)) { // dump out last part of section section.add(new String[]{currKey,currVal.toString()}); br.reset(); done = true; <\snip> The condition in the if-clause will ignore lines which don't begin with a whitespace, so this line will be read 99999961 cccgcccaca cccctcggcc ctgccctctg gccatacagg ttctcggtgg tgttgaagag <\snip> and this line won't be read: 100000021 gtcctcgggc tccggcttgg tgctcacgca cacaggaaag tcagcttctc ctgggagggc <\snip> If you change the if-statement to this: String firstSecKey = section.size() == 0 ? "" : ((String[])section.get(0))[0]; if (line==null || line.length()==0 || (!line.startsWith(" ") && linecount++>0 && ( !firstSecKey.equals(START_SEQUENCE_TAG) || line.startsWith(END_SEQUENCE_TAG)))) <\snip> You can add the whole sequence without truncation to the database. I have attached GenbankFormat.java in this mail. Can anybody check the method for me and commit it? Since I'm not a BioJava specialist. Cheers, Gabrielle Richard Holland schrieb: > Hello. > > Sorry for the delayed reply - I've been away on business all week. > > The similar Ruby issue (and solution) is discussed here: > > http://portal.open-bio.org/pipermail/bioruby/2004-March.txt > > How did you parse the files in the first place? Did you use the new > GenBank parsers (BJX), or the older ones? This will help indicate > where the problem lies - the data will have been truncated at the > point it was parsed from file, so the data in your database will > reflect this and you'll have to reload it once the appropriate parser > has been fixed. > > If it was the newer BJX parser, then the problem most probably lies in > this regex from org.biojavax.bio.seq.io.GenbankFormat, which can > probably be fixed in a similar manner to the Ruby equivalent dicussed > in the posting above: > > protected static final Pattern sectp = > Pattern.compile("^(\\s{0,8}(\\S+)\\s{1,7}(.*)|\\s{21}(/\\S+?)=(.*)|\\s{21}(/\\S+))$"); > > Could someone volunteer to develop and test a fix? If you come up with > something, please commit it to the SVN trunk. > > cheers, > Richard > > > 2008/10/28 Gabrielle Doan : >> Hi all, >> concering the problem as described below I have found out that this problem >> also occured in BioRuby and was fixed in 2004. >> See: >> http://cvs.biojava.org/cgi-bin/viewcvs/viewcvs.cgi/bioruby/lib/bio/db.rb?cvsroot=bioruby >> Unfortunately I'm clueless about BioRuby. Does anybody recognize this >> problem or understand how it was solved in BioRuby? >> >> I am grateful for any hints. >> >> Cheers, >> >> Gabrielle >> >> >> -------- Original-Nachricht -------- >> Betreff: [Biojava-l] differences between read in sequence and stored >> sequence in database >> Datum: Mon, 27 Oct 2008 13:57:03 +0100 >> Von: Gabrielle Doan >> An: biojava-l at biojava.org >> >> Hi all, >> >> I have a BioSQL database which contains all human chromsomes. For my >> recent project I have to query for a part of a sequence. >> As far as I know I can get the whole sequence from the entry >> Biosequence.Seq in the BioSQL schema. So I've made this query: >> >> SELECT SUBSTRING(bs.seq, 131615042, 131626262) FROM biosequence bs; >> >> But this query hasn't yield the desired string, because the length of >> this biosequence is only 100,000,020 bp. I am very confused why I get >> such a discrepancy. I have added all chromosomes with the build in >> method in BioJava addRichSequence(RichSequence seq) to the database. >> From my raw data I know that this sequence should have a length of >> 140,279,252 bp. So where is the remaining part of my sequence? I have >> observed these discrepancies on all chromsomes which are longer than >> 100,000,020 bp. >> >> Here is an abstract of my database: >> bioentry_id description length >> 2 Homo sapiens mitochondrion, complete genome. 16571 >> 3 Homo sapiens chromosome Y, reference assembly, complete sequence. >> 57772954 >> 4 Homo sapiens chromosome X, reference assembly, complete sequence. >> 100000020 >> 5 Homo sapiens chromosome 22, reference assembly, complete sequence. >> 49691432 >> 6 Homo sapiens chromosome 21, reference assembly, complete sequence. >> 46944323 >> 7 Homo sapiens chromosome 20, reference assembly, complete sequence. >> 25960004 >> 8 Homo sapiens chromosome 9, reference assembly, complete sequence. >> 100000020 >> 9 Homo sapiens chromosome 7, reference assembly, complete sequence. >> 100000020 >> >> Sequences smaller than 100,000,020 bp are correctly stored under >> Biosequence.seq. >> >> I am grateful for any hints, which explain the behaviour of my database. >> >> Cheers, >> >> Gabrielle >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> > > > From community at struck.lu Mon Nov 3 11:54:16 2008 From: community at struck.lu (community at struck.lu) Date: Mon, 03 Nov 2008 17:54:16 +0100 Subject: [Biojava-l] Change the height of the peaks in a chromatogram Message-ID: Hello, I want to provide a slider where the user can change dynamically the height of the peaks of a chromatogram. To do this I change the maxTraceValue variable and set the maximum values lower than they are in reality. Does there exist a better method do this? Best regards, Daniel Struck _________________________________________________________ Mail sent using root eSolutions Webmailer - www.root.lu From holland at eaglegenomics.com Mon Nov 3 13:18:55 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Mon, 3 Nov 2008 18:18:55 +0000 Subject: [Biojava-l] Change the height of the peaks in a chromatogram In-Reply-To: References: Message-ID: Could you use some kind of scale transformation on the chromatogram's Graphics2D object, rather than modifying the data? http://java.sun.com/j2se/1.4.2/docs/api/java/awt/Graphics2D.html#scale(double,%20double) cheers, Richard 2008/11/3 community at struck.lu : > Hello, > > > I want to provide a slider where the user can change dynamically the height of > the peaks of a chromatogram. To do this I change the maxTraceValue variable > and set the maximum values lower than they are in reality. > Does there exist a better method do this? > > > Best regards, > Daniel Struck > _________________________________________________________ > Mail sent using root eSolutions Webmailer - www.root.lu > > > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From holland at eaglegenomics.com Mon Nov 3 13:22:29 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Mon, 3 Nov 2008 18:22:29 +0000 Subject: [Biojava-l] SCF: support for ambiguities In-Reply-To: References: Message-ID: Thanks for the fix. I'll review this and get back to you in a couple of days. cheers, Richard 2008/11/3 community at struck.lu : > I have added the missing ambiguities to DNATools.java and then used these in > SCF.java. > The two patches are appended to this email. > > Greetings, > Daniel > > > "Richard Holland" wrote: > >> A patch would be much appreciated! >> >> cheers, >> Richard >> >> 2008/10/31 community at struck.lu : >> > True. It was a first quick and dirty hack to get the rest of my project >> going. >> > >> > I think adding support of the IUPAC ambiguities to DNATools would be the >> most >> > approbate solution. The SCF class can then easily be adapted. >> > >> > Are there any plans to do so? >> > If not, I could give it a try and submit a patch for DNATools and SCF. >> > >> > Greetings, >> > Daniel >> > >> > "Richard Holland" wrote: >> > >> >> It is the correct method, yes. >> >> >> >> However your code constructs a new hash set every time it does the >> >> check for W or S etc.. It would be much more efficient to create >> >> class-static references to the ambiguity symbols you need, instead of >> >> (re)creating them every time they're encountered. A class-static gap >> >> symbol reference would also be good in this situation. >> >> >> >> cheers, >> >> Richard >> >> >> >> >> >> >> >> 2008/10/31 community at struck.lu : >> >> > Hello, >> >> > >> >> > >> >> > I am using the SCF class in the context of HIV-1 population sequencing. >> In >> >> > this context we do have sometimes ambiguous base calls. To support them > I >> >> > extended the SCF class to allow for IUPAC ambiguities up to 2 >> nucleotides. >> >> > >> >> > Therefore I simply added the following code to the "decode" function: >> >> > >> >> > ######################### >> >> > public Symbol decode(byte call) throws IllegalSymbolException { >> >> > >> >> > //get the DNA Alphabet >> >> > Alphabet dna = DNATools.getDNA(); >> >> > >> >> > char c = (char) call; >> >> > switch (c) { >> >> > case 'a': >> >> > case 'A': >> >> > return DNATools.a(); >> >> > case 'c': >> >> > case 'C': >> >> > return DNATools.c(); >> >> > case 'g': >> >> > case 'G': >> >> > return DNATools.g(); >> >> > case 't': >> >> > case 'T': >> >> > return DNATools.t(); >> >> > case 'n': >> >> > case 'N': >> >> > return DNATools.n(); >> >> > case '-': >> >> > return DNATools.getDNA().getGapSymbol(); >> >> > case 'w': >> >> > case 'W': >> >> > //make the 'W' symbol >> >> > Set symbolsThatMakeW = new HashSet(); >> >> > symbolsThatMakeW.add(DNATools.a()); >> >> > symbolsThatMakeW.add(DNATools.t()); >> >> > Symbol w = dna.getAmbiguity(symbolsThatMakeW); >> >> > return w; >> >> > case 's': >> >> > case 'S': >> >> > //make the 'S' symbol >> >> > Set symbolsThatMakeS = new HashSet(); >> >> > symbolsThatMakeS.add(DNATools.c()); >> >> > symbolsThatMakeS.add(DNATools.g()); >> >> > Symbol s = dna.getAmbiguity(symbolsThatMakeS); >> >> > return s; >> >> > ... (and so on) >> >> > ######################### >> >> > >> >> > Is this the right way to do it? And if so, how can this code be > submitted >> > to >> >> > the official biojava source code? >> >> > >> >> > >> >> > Best regards, >> >> > Daniel Struck >> >> > _________________________________________________________ >> >> > Mail sent using root eSolutions Webmailer - www.root.lu >> >> > >> >> > >> >> > _______________________________________________ >> >> > Biojava-l mailing list - Biojava-l at lists.open-bio.org >> >> > http://lists.open-bio.org/mailman/listinfo/biojava-l >> >> > >> >> >> >> >> > >> > >> > _________________________________________________________ >> > Mail sent using root eSolutions Webmailer - www.root.lu >> > >> > >> > >> >> > > > _________________________________________________________ > Mail sent using root eSolutions Webmailer - www.root.lu > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From gabrielle_doan at gmx.net Tue Nov 4 03:29:31 2008 From: gabrielle_doan at gmx.net (Gabrielle Doan) Date: Tue, 04 Nov 2008 09:29:31 +0100 Subject: [Biojava-l] performance problems with BJX In-Reply-To: <490F0F4D.3090100@gmx.net> References: <49072127.7010304@gmx.net> <490F0F4D.3090100@gmx.net> Message-ID: <491007EB.6000007@gmx.net> Dear all, I have some perfomance problems with BioJavaX. I wanted to add the human chromosome 1 into my MySQL database with the build in method addRichSequence from the org.biojavax.bio.db.biosql.BioSQLRichSequenceDB and was wondered why this method waste so much memory. I started my program with -Xmx8G but I got a Java heap space messseage on my console. So I used -Xmx15G to insert the chromsome (range between 8G and 15G not tested). I wonder why a genbank file of about 300 MB needs about 15G memory to be added into the database. Does anybody has the same problem or can give me any advice? Cheers, Gabrielle From markjschreiber at gmail.com Tue Nov 4 03:53:29 2008 From: markjschreiber at gmail.com (Mark Schreiber) Date: Tue, 4 Nov 2008 16:53:29 +0800 Subject: [Biojava-l] performance problems with BJX In-Reply-To: <491007EB.6000007@gmx.net> References: <49072127.7010304@gmx.net> <490F0F4D.3090100@gmx.net> <491007EB.6000007@gmx.net> Message-ID: <93b45ca50811040053w5111345t9bb895236393345a@mail.gmail.com> Object relational mapping can be memory hungry but this does seem expensive. Probably the easiest way to track the problem is to run a memory profiler (such as the one in Netbeans) and see if there is either some very large object or a proliferation of thousands of small objects which would point to a memory leak. Best regards, - Mark On Tue, Nov 4, 2008 at 4:29 PM, Gabrielle Doan wrote: > > Dear all, > I have some perfomance problems with BioJavaX. > > I wanted to add the human chromosome 1 into my MySQL database with the build in method addRichSequence from the org.biojavax.bio.db.biosql.BioSQLRichSequenceDB and was wondered why this method waste so much memory. I started my program with -Xmx8G but I got a Java heap space messseage on my console. So I used -Xmx15G to insert the chromsome (range between 8G and 15G not tested). > > I wonder why a genbank file of about 300 MB needs about 15G memory to be added into the database. > > Does anybody has the same problem or can give me any advice? > > Cheers, Gabrielle > > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l From markjschreiber at gmail.com Tue Nov 4 04:49:04 2008 From: markjschreiber at gmail.com (Mark Schreiber) Date: Tue, 4 Nov 2008 17:49:04 +0800 Subject: [Biojava-l] Off Topic: Solutions to evenly overlapping substring problem?? Message-ID: <93b45ca50811040149n640020dcp8948d4d875a62ed7@mail.gmail.com> Hi - Does anyone know how to solve this problem? I have a piece of DNA which is 10763 bp long. I want to divide this up evenly into 10 fragments each of 2500bp in length. What is the overlap required between each fragment? Or more generally, for a sequence of length L, how much overlap O is required to generate N fragments of length l (were N and l are fixed)? A solution would be most appreciated. Extra points for coding it in biojava and posting it on the cookbook!! - Mark From holland at eaglegenomics.com Tue Nov 4 05:49:17 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Tue, 4 Nov 2008 10:49:17 +0000 Subject: [Biojava-l] Off Topic: Solutions to evenly overlapping substring problem?? In-Reply-To: <93b45ca50811040149n640020dcp8948d4d875a62ed7@mail.gmail.com> References: <93b45ca50811040149n640020dcp8948d4d875a62ed7@mail.gmail.com> Message-ID: It's a maths problem. Length of total sequence = L Number of overlapping sequences required = N Number of overlaps required = N-1 Length of each overlapping sequence required =S Offset for each overlapping sequence = length of one non-overlapping sequence = L/(N-1) = X Overlap = O = S - X In your case this gives: X = 10763 / (10-1) = 10763 / 9 = 1196 (rounded up) O = 2500 - 1196 = 1304 So you would start at the beginning, take S bases, then move along X bases and take the next S, and so on... your first sequence would be 1..2500, your second would be 1197..3697, your third would be 2393..4893, etc. etc., and each one would then overlap the next by 1304. cheers, Richard 2008/11/4 Mark Schreiber : > Hi - > > Does anyone know how to solve this problem? > > I have a piece of DNA which is 10763 bp long. I want to divide this up > evenly into 10 fragments each of 2500bp in length. What is the overlap > required between each fragment? > > Or more generally, for a sequence of length L, how much overlap O is > required to generate N fragments of length l (were N and l are fixed)? > > A solution would be most appreciated. Extra points for coding it in > biojava and posting it on the cookbook!! > > - Mark > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From holland at eaglegenomics.com Tue Nov 4 06:58:18 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Tue, 4 Nov 2008 11:58:18 +0000 Subject: [Biojava-l] performance problems with BJX In-Reply-To: <93b45ca50811040053w5111345t9bb895236393345a@mail.gmail.com> References: <49072127.7010304@gmx.net> <490F0F4D.3090100@gmx.net> <491007EB.6000007@gmx.net> <93b45ca50811040053w5111345t9bb895236393345a@mail.gmail.com> Message-ID: BioJava stores sequences as a list of symbol objects. Each object is a singleton, and so the sequence is essentially a list of pointers. I guess you're running on a 64-bit machine. One pointer on a 64-bit machine is 64 bits = 8 bytes. Your genbank file for human chromosome 1 is probably going to have about 250,000,000 bases or so. Each of those bases, as a string, takes 1 or 2 bytes (8- or 16-bits) depending on encoding. So a string, or file, encoded using 8 bits, you're going to get 1 byte per base = approx. 250MB, plus feature and annotation data. That sounds about right given that your file is 300MB. As a list of pointers to singletons on a 64-bit machine, you're going to end up using 8 bytes per base instead of 1 byte. 8 * 250MB = 2Gig. This explains the first 2 gigabytes. Where the other 13 are coming from I'm not sure, but I wouldn't be surprised if they're the features. cheers, Richard PS. The new BJ3 will only convert sequences from String to Symbols when explicitly requested to do so - this will help save memory (and time) when doing simple operations such as copying files into databases without any intermediate processing. 2008/11/4 Mark Schreiber : > Object relational mapping can be memory hungry but this does seem > expensive. Probably the easiest way to track the problem is to run a > memory profiler (such as the one in Netbeans) and see if there is > either some very large object or a proliferation of thousands of small > objects which would point to a memory leak. > > Best regards, > > - Mark > > On Tue, Nov 4, 2008 at 4:29 PM, Gabrielle Doan wrote: >> >> Dear all, >> I have some perfomance problems with BioJavaX. >> >> I wanted to add the human chromosome 1 into my MySQL database with the build in method addRichSequence from the org.biojavax.bio.db.biosql.BioSQLRichSequenceDB and was wondered why this method waste so much memory. I started my program with -Xmx8G but I got a Java heap space messseage on my console. So I used -Xmx15G to insert the chromsome (range between 8G and 15G not tested). >> >> I wonder why a genbank file of about 300 MB needs about 15G memory to be added into the database. >> >> Does anybody has the same problem or can give me any advice? >> >> Cheers, Gabrielle >> >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From markjschreiber at gmail.com Tue Nov 4 07:05:34 2008 From: markjschreiber at gmail.com (Mark Schreiber) Date: Tue, 4 Nov 2008 20:05:34 +0800 Subject: [Biojava-l] performance problems with BJX In-Reply-To: References: <49072127.7010304@gmx.net> <490F0F4D.3090100@gmx.net> <491007EB.6000007@gmx.net> <93b45ca50811040053w5111345t9bb895236393345a@mail.gmail.com> Message-ID: <93b45ca50811040405l7e585775g91b0e667870c7541@mail.gmail.com> I would have thought the symbol packing threshold would have kicked in which should reduce the memory load on a sequence. - Mark On Tue, Nov 4, 2008 at 7:58 PM, Richard Holland wrote: > BioJava stores sequences as a list of symbol objects. Each object is a > singleton, and so the sequence is essentially a list of pointers. > > I guess you're running on a 64-bit machine. One pointer on a 64-bit > machine is 64 bits = 8 bytes. > > Your genbank file for human chromosome 1 is probably going to have > about 250,000,000 bases or so. Each of those bases, as a string, takes > 1 or 2 bytes (8- or 16-bits) depending on encoding. So a string, or > file, encoded using 8 bits, you're going to get 1 byte per base = > approx. 250MB, plus feature and annotation data. That sounds about > right given that your file is 300MB. > > As a list of pointers to singletons on a 64-bit machine, you're going > to end up using 8 bytes per base instead of 1 byte. 8 * 250MB = 2Gig. > > This explains the first 2 gigabytes. Where the other 13 are coming > from I'm not sure, but I wouldn't be surprised if they're the > features. > > cheers, > Richard > > PS. The new BJ3 will only convert sequences from String to Symbols > when explicitly requested to do so - this will help save memory (and > time) when doing simple operations such as copying files into > databases without any intermediate processing. > > > > 2008/11/4 Mark Schreiber : >> Object relational mapping can be memory hungry but this does seem >> expensive. Probably the easiest way to track the problem is to run a >> memory profiler (such as the one in Netbeans) and see if there is >> either some very large object or a proliferation of thousands of small >> objects which would point to a memory leak. >> >> Best regards, >> >> - Mark >> >> On Tue, Nov 4, 2008 at 4:29 PM, Gabrielle Doan wrote: >>> >>> Dear all, >>> I have some perfomance problems with BioJavaX. >>> >>> I wanted to add the human chromosome 1 into my MySQL database with the build in method addRichSequence from the org.biojavax.bio.db.biosql.BioSQLRichSequenceDB and was wondered why this method waste so much memory. I started my program with -Xmx8G but I got a Java heap space messseage on my console. So I used -Xmx15G to insert the chromsome (range between 8G and 15G not tested). >>> >>> I wonder why a genbank file of about 300 MB needs about 15G memory to be added into the database. >>> >>> Does anybody has the same problem or can give me any advice? >>> >>> Cheers, Gabrielle >>> >>> _______________________________________________ >>> Biojava-l mailing list - Biojava-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/biojava-l >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> > > > > -- > Richard Holland, BSc MBCS > Finance Director, Eagle Genomics Ltd > M: +44 7500 438846 | E: holland at eaglegenomics.com > http://www.eaglegenomics.com/ > From markjschreiber at gmail.com Tue Nov 4 07:55:58 2008 From: markjschreiber at gmail.com (Mark Schreiber) Date: Tue, 4 Nov 2008 20:55:58 +0800 Subject: [Biojava-l] Off Topic: Solutions to evenly overlapping substring problem?? In-Reply-To: References: <93b45ca50811040149n640020dcp8948d4d875a62ed7@mail.gmail.com> Message-ID: <93b45ca50811040455y7e531e90me3541252e5f24186@mail.gmail.com> Hi - This is what I thought as well but if you use that number to generate the sub strings it doesn't work. The value 1585 works (with one character left over). I'm not sure how to make that into a generalizable formula though. - Mark On Tue, Nov 4, 2008 at 6:49 PM, Richard Holland wrote: > It's a maths problem. > > Length of total sequence = L > > Number of overlapping sequences required = N > > Number of overlaps required = N-1 > > Length of each overlapping sequence required =S > > Offset for each overlapping sequence = length of one non-overlapping > sequence = L/(N-1) = X > > Overlap = O = S - X > > In your case this gives: > > X = 10763 / (10-1) > = 10763 / 9 > = 1196 (rounded up) > O = 2500 - 1196 > = 1304 > > So you would start at the beginning, take S bases, then move along X > bases and take the next S, and so on... your first sequence would be > 1..2500, your second would be 1197..3697, your third would be > 2393..4893, etc. etc., and each one would then overlap the next by > 1304. > > cheers, > Richard > > > 2008/11/4 Mark Schreiber : >> Hi - >> >> Does anyone know how to solve this problem? >> >> I have a piece of DNA which is 10763 bp long. I want to divide this up >> evenly into 10 fragments each of 2500bp in length. What is the overlap >> required between each fragment? >> >> Or more generally, for a sequence of length L, how much overlap O is >> required to generate N fragments of length l (were N and l are fixed)? >> >> A solution would be most appreciated. Extra points for coding it in >> biojava and posting it on the cookbook!! >> >> - Mark >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> > > > > -- > Richard Holland, BSc MBCS > Finance Director, Eagle Genomics Ltd > M: +44 7500 438846 | E: holland at eaglegenomics.com > http://www.eaglegenomics.com/ > From stefan.grzybek at novartis.com Tue Nov 4 08:51:52 2008 From: stefan.grzybek at novartis.com (stefan.grzybek at novartis.com) Date: Tue, 4 Nov 2008 14:51:52 +0100 Subject: [Biojava-l] Off Topic: Solutions to evenly overlapping substring problem?? In-Reply-To: <93b45ca50811040455y7e531e90me3541252e5f24186@mail.gmail.com> Message-ID: Hi Mark and David, I have a slightly different approach: n = L / N; minimum number of bp in a single interval o = (l-n) / (N-1); additional overlap possibility (bp) for each interval - maybe there is a better description for this ? Then you can start with the interval 1 to l and add to the start point for each iteration (l-n+o). It might be that the last segment needs to be a bit longer or shorter than l. For your example, n = 1076 ("floor"), o = 158 ("floor"), (l-n+o) = 1582. #segment, start, end, overlap with previous segment 1 s: 1 e: 2500 - overlap: 0 2 s: 919 e: 3418 - overlap: 1582 3 s: 1837 e: 4336 - overlap: 1582 4 s: 2755 e: 5254 - overlap: 1582 5 s: 3673 e: 6172 - overlap: 1582 6 s: 4591 e: 7090 - overlap: 1582 7 s: 5509 e: 8008 - overlap: 1582 8 s: 6427 e: 8926 - overlap: 1582 9 s: 7345 e: 9844 - overlap: 1582 10 s: 8263 e: 10762 - overlap: 1582 This approach seems to work reasonably well also with l=1500, l=3500, l=4500. Best regards, Stefan "Mark Schreiber" Sent by: biojava-l-bounces at lists.open-bio.org 04-11-2008 13:58 To holland at eaglegenomics.com cc "biojava-l at biojava.org" Subject Re: [Biojava-l] Off Topic: Solutions to evenly overlapping substring problem?? Hi - This is what I thought as well but if you use that number to generate the sub strings it doesn't work. The value 1585 works (with one character left over). I'm not sure how to make that into a generalizable formula though. - Mark On Tue, Nov 4, 2008 at 6:49 PM, Richard Holland wrote: > It's a maths problem. > > Length of total sequence = L > > Number of overlapping sequences required = N > > Number of overlaps required = N-1 > > Length of each overlapping sequence required =S > > Offset for each overlapping sequence = length of one non-overlapping > sequence = L/(N-1) = X > > Overlap = O = S - X > > In your case this gives: > > X = 10763 / (10-1) > = 10763 / 9 > = 1196 (rounded up) > O = 2500 - 1196 > = 1304 > > So you would start at the beginning, take S bases, then move along X > bases and take the next S, and so on... your first sequence would be > 1..2500, your second would be 1197..3697, your third would be > 2393..4893, etc. etc., and each one would then overlap the next by > 1304. > > cheers, > Richard > > > 2008/11/4 Mark Schreiber : >> Hi - >> >> Does anyone know how to solve this problem? >> >> I have a piece of DNA which is 10763 bp long. I want to divide this up >> evenly into 10 fragments each of 2500bp in length. What is the overlap >> required between each fragment? >> >> Or more generally, for a sequence of length L, how much overlap O is >> required to generate N fragments of length l (were N and l are fixed)? >> >> A solution would be most appreciated. Extra points for coding it in >> biojava and posting it on the cookbook!! >> >> - Mark >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> > > > > -- > Richard Holland, BSc MBCS > Finance Director, Eagle Genomics Ltd > M: +44 7500 438846 | E: holland at eaglegenomics.com > http://www.eaglegenomics.com/ > _______________________________________________ Biojava-l mailing list - Biojava-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/biojava-l _________________________ CONFIDENTIALITY NOTICE The information contained in this e-mail message is intended only for the exclusive use of the individual or entity named above and may contain information that is privileged, confidential or exempt from disclosure under applicable law. If the reader of this message is not the intended recipient, or the employee or agent responsible for delivery of the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify the sender immediately by e-mail and delete the material from any computer. Thank you. From community at struck.lu Tue Nov 4 11:20:09 2008 From: community at struck.lu (community at struck.lu) Date: Tue, 04 Nov 2008 17:20:09 +0100 Subject: [Biojava-l] Change the height of the peaks in a chromatogram In-Reply-To: References: Message-ID: Thanks, that did point me in the right direction. This did the trick: ######################### // zoom it g2.translate(0, -OUT_HEIGHT * (zoom - 1)); g2.scale(1, zoom); ######################### This is my test class if anyone wants to try it out: ######################### /* * To change this template, choose Tools | Templates * and open the template in the editor. */ package trace; import java.awt.Graphics; import java.awt.Graphics2D; import java.io.File; import java.io.IOException; import javax.swing.BoxLayout; import javax.swing.JFrame; import javax.swing.JPanel; import javax.swing.JSlider; import javax.swing.event.ChangeEvent; import javax.swing.event.ChangeListener; import org.biojava.bio.chromatogram.Chromatogram; import org.biojava.bio.chromatogram.UnsupportedChromatogramFormatException; import org.biojava.bio.chromatogram.graphic.ChromatogramGraphic; import org.biojava.bio.program.scf.SCF; /** * * @author Daniel Struck */ public class TracePanel_test extends JPanel implements ChangeListener { private final int OUT_HEIGHT = 50; private Chromatogram c; private double zoom; public TracePanel_test(Chromatogram c, double zoom) { this.c = c; this.zoom = zoom; } @Override public void paintComponent(Graphics g) { Graphics2D g2 = (Graphics2D) g; /* create ChromatogramGraphic */ ChromatogramGraphic gfx = new ChromatogramGraphic(c); gfx.setHeight(OUT_HEIGHT); gfx.setHorizontalScale(1.0f); gfx.setOption(ChromatogramGraphic.Option.USE_PER_SHAPE_TRANSFORM, Boolean.TRUE); // zoom it g2.translate(0, -OUT_HEIGHT * (zoom - 1)); g2.scale(1, zoom); gfx.drawTo(g2); } public static void main(String[] args) { try { JFrame frame = new JFrame(); frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE); SCF chroma = SCF.create(new File("someTraceFileSomeWhere.scf")); TracePanel_test test1 = new TracePanel_test(chroma, 1); JPanel panel = new JPanel(); panel.setLayout(new BoxLayout(panel, BoxLayout.X_AXIS)); JSlider zoomSlider = new JSlider(JSlider.VERTICAL, 1, 20, 1); zoomSlider.addChangeListener(test1); panel.add(zoomSlider); panel.add(test1); frame.getContentPane().add(panel); frame.setSize(800, 80); frame.setVisible(true); } catch (IOException ex) { ex.printStackTrace(); } catch (UnsupportedChromatogramFormatException ex) { ex.printStackTrace(); } } public void stateChanged(ChangeEvent e) { JSlider source = (JSlider) e.getSource(); zoom = source.getValue(); this.repaint(); } } ######################### Greetings, Daniel Struck "Richard Holland" wrote: > Could you use some kind of scale transformation on the chromatogram's > Graphics2D object, rather than modifying the data? > > http://java.sun.com/j2se/1.4.2/docs/api/java/awt/Graphics2D.html#scale(double,%20double) > > cheers, > Richard > > 2008/11/3 community at struck.lu : > > Hello, > > > > > > I want to provide a slider where the user can change dynamically the height > of > > the peaks of a chromatogram. To do this I change the maxTraceValue variable > > and set the maximum values lower than they are in reality. > > Does there exist a better method do this? > > > > > > Best regards, > > Daniel Struck > > _________________________________________________________ > > Mail sent using root eSolutions Webmailer - www.root.lu > > > > > > _______________________________________________ > > Biojava-l mailing list - Biojava-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/biojava-l > > > > _________________________________________________________ Mail sent using root eSolutions Webmailer - www.root.lu From holland at eaglegenomics.com Wed Nov 5 06:49:40 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Wed, 5 Nov 2008 11:49:40 +0000 Subject: [Biojava-l] SCF: support for ambiguities In-Reply-To: References: Message-ID: This has now been applied to the trunk of biojava-live. cheers, Richard 2008/11/3 Richard Holland : > Thanks for the fix. I'll review this and get back to you in a couple of days. > > cheers, > Richard > > 2008/11/3 community at struck.lu : >> I have added the missing ambiguities to DNATools.java and then used these in >> SCF.java. >> The two patches are appended to this email. >> >> Greetings, >> Daniel >> >> >> "Richard Holland" wrote: >> >>> A patch would be much appreciated! >>> >>> cheers, >>> Richard >>> >>> 2008/10/31 community at struck.lu : >>> > True. It was a first quick and dirty hack to get the rest of my project >>> going. >>> > >>> > I think adding support of the IUPAC ambiguities to DNATools would be the >>> most >>> > approbate solution. The SCF class can then easily be adapted. >>> > >>> > Are there any plans to do so? >>> > If not, I could give it a try and submit a patch for DNATools and SCF. >>> > >>> > Greetings, >>> > Daniel >>> > >>> > "Richard Holland" wrote: >>> > >>> >> It is the correct method, yes. >>> >> >>> >> However your code constructs a new hash set every time it does the >>> >> check for W or S etc.. It would be much more efficient to create >>> >> class-static references to the ambiguity symbols you need, instead of >>> >> (re)creating them every time they're encountered. A class-static gap >>> >> symbol reference would also be good in this situation. >>> >> >>> >> cheers, >>> >> Richard >>> >> >>> >> >>> >> >>> >> 2008/10/31 community at struck.lu : >>> >> > Hello, >>> >> > >>> >> > >>> >> > I am using the SCF class in the context of HIV-1 population sequencing. >>> In >>> >> > this context we do have sometimes ambiguous base calls. To support them >> I >>> >> > extended the SCF class to allow for IUPAC ambiguities up to 2 >>> nucleotides. >>> >> > >>> >> > Therefore I simply added the following code to the "decode" function: >>> >> > >>> >> > ######################### >>> >> > public Symbol decode(byte call) throws IllegalSymbolException { >>> >> > >>> >> > //get the DNA Alphabet >>> >> > Alphabet dna = DNATools.getDNA(); >>> >> > >>> >> > char c = (char) call; >>> >> > switch (c) { >>> >> > case 'a': >>> >> > case 'A': >>> >> > return DNATools.a(); >>> >> > case 'c': >>> >> > case 'C': >>> >> > return DNATools.c(); >>> >> > case 'g': >>> >> > case 'G': >>> >> > return DNATools.g(); >>> >> > case 't': >>> >> > case 'T': >>> >> > return DNATools.t(); >>> >> > case 'n': >>> >> > case 'N': >>> >> > return DNATools.n(); >>> >> > case '-': >>> >> > return DNATools.getDNA().getGapSymbol(); >>> >> > case 'w': >>> >> > case 'W': >>> >> > //make the 'W' symbol >>> >> > Set symbolsThatMakeW = new HashSet(); >>> >> > symbolsThatMakeW.add(DNATools.a()); >>> >> > symbolsThatMakeW.add(DNATools.t()); >>> >> > Symbol w = dna.getAmbiguity(symbolsThatMakeW); >>> >> > return w; >>> >> > case 's': >>> >> > case 'S': >>> >> > //make the 'S' symbol >>> >> > Set symbolsThatMakeS = new HashSet(); >>> >> > symbolsThatMakeS.add(DNATools.c()); >>> >> > symbolsThatMakeS.add(DNATools.g()); >>> >> > Symbol s = dna.getAmbiguity(symbolsThatMakeS); >>> >> > return s; >>> >> > ... (and so on) >>> >> > ######################### >>> >> > >>> >> > Is this the right way to do it? And if so, how can this code be >> submitted >>> > to >>> >> > the official biojava source code? >>> >> > >>> >> > >>> >> > Best regards, >>> >> > Daniel Struck >>> >> > _________________________________________________________ >>> >> > Mail sent using root eSolutions Webmailer - www.root.lu >>> >> > >>> >> > >>> >> > _______________________________________________ >>> >> > Biojava-l mailing list - Biojava-l at lists.open-bio.org >>> >> > http://lists.open-bio.org/mailman/listinfo/biojava-l >>> >> > >>> >> >>> >> >>> > >>> > >>> > _________________________________________________________ >>> > Mail sent using root eSolutions Webmailer - www.root.lu >>> > >>> > >>> > >>> >>> >> >> >> _________________________________________________________ >> Mail sent using root eSolutions Webmailer - www.root.lu >> > > > > -- > Richard Holland, BSc MBCS > Finance Director, Eagle Genomics Ltd > M: +44 7500 438846 | E: holland at eaglegenomics.com > http://www.eaglegenomics.com/ > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From raphael.andre.bauer at gmail.com Thu Nov 6 05:07:18 2008 From: raphael.andre.bauer at gmail.com (=?UTF-8?Q?Raphael_Andr=C3=A9_Bauer?=) Date: Thu, 6 Nov 2008 11:07:18 +0100 Subject: [Biojava-l] YG and parsing error of PDB file Message-ID: <9b46aa30811060207t4c7bf77fx231877e9269af462@mail.gmail.com> hi biojava-l, i am getting the following exception: badly formatted line ... SEQRES 3 A 76 C C A G A OMC U OMG A A YG A PSU org.biojava.bio.structure.io.PDBParseException: amino acid name is not of length 3! (YG) when i am trying to parse the pdb entry 4TNA [1] (a RNA structure). It seems that YG [2] is an ordinary compound that is built into the RNA chain. is this really an error inside the PDB file, or is this something where the biojava parser confuses amino acids and hetero ids because of their lengths? is there an approved biojava way where i can catch the exception without breaking the rest of the parsing? many thanks, raphael [1] http://bioinf-services.charite.de/supersite/resultHET.faces?hetid=YG [2] http://bioinf-services.charite.de/supersite/resultPDB.faces?pdbid=4TNA From ella.veitch at gmail.com Thu Nov 6 06:38:14 2008 From: ella.veitch at gmail.com (Ella Veitch) Date: Fri, 7 Nov 2008 00:38:14 +1300 Subject: [Biojava-l] SubSequence Help Message-ID: Hi guys- new here hope this is the right medium for getting questions answered. I hope someone can shed some light as to what i am doing wrong here I am trying to extract subsequence data from a RichSequence as follows: RichSequenceIterator seqs=RichSequence.IOTools.readFastaDNA(input, ns); RichSequence rs=seqs.nextRichSequence(); return RichSequence.Tools.subSequence(rs, startCoord, endCoord,rs.getNamespace(),seqName, rs.getAccession(), rs.getIdentifier(), rs.getVersion(),rs.getSeqVersion()); When I check my result againt the expected i find that for example 5001-5175 yeilds a sequence located at 10001 and 10175 Any insights as to why? I hope so Thanks for your help Ella From holland at eaglegenomics.com Thu Nov 6 07:13:07 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Thu, 6 Nov 2008 12:13:07 +0000 Subject: [Biojava-l] SubSequence Help In-Reply-To: References: Message-ID: I've just tried to reproduce this and haven't been able to. Could you supply the full code, including the bit where you set startCoord and endCoord, and also the full file that you're working on it with? (You'll have to send them direct to me if you're using attachments as the mailing list won't accept them). cheers, Richard 2008/11/6 Ella Veitch : > Hi guys- new here hope this is the right medium for getting questions > answered. > > I hope someone can shed some light as to what i am doing wrong here > I am trying to extract subsequence data from a RichSequence as follows: > > RichSequenceIterator seqs=RichSequence.IOTools.readFastaDNA(input, > ns); > RichSequence rs=seqs.nextRichSequence(); > > return RichSequence.Tools.subSequence(rs, startCoord, > endCoord,rs.getNamespace(),seqName, > rs.getAccession(), rs.getIdentifier(), > rs.getVersion(),rs.getSeqVersion()); > > When I check my result againt the expected i find that for example 5001-5175 > yeilds a sequence located at 10001 and 10175 > > Any insights as to why? > > I hope so > > Thanks for your help > > Ella > > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From andreas at sdsc.edu Thu Nov 6 11:20:06 2008 From: andreas at sdsc.edu (Andreas Prlic) Date: Thu, 6 Nov 2008 08:20:06 -0800 Subject: [Biojava-l] YG and parsing error of PDB file In-Reply-To: <9b46aa30811060207t4c7bf77fx231877e9269af462@mail.gmail.com> References: <9b46aa30811060207t4c7bf77fx231877e9269af462@mail.gmail.com> Message-ID: <59a41c430811060820o43f99eber6d52c1a288b1ad22@mail.gmail.com> Hi Raphael, The parsing is perhaps a bit verbose and might be misleading in this case. It does not break or stop after printing this exception. If you investigate the loaded structure object in the end you can see that the toString() looks like this: structure 4TNA IdCode: 4TNA Classification: AMINO-ACID TRANSPORT DepDate: Wed Apr 12 00:00:00 PST 1978 Technique: X-RAY DIFFRACTION Resolution: 2.5 ModDate: Tue Apr 01 00:00:00 PST 2003 Title: FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE chains: chain 0: >A< TRNAPHE length SEQRES: 0 length ATOM: 76 aminos: 0 hetatms: 14 nucleotides: 62 chain 1: > < length SEQRES: 0 length ATOM: 4 aminos: 0 hetatms: 4 nucleotides: 0 Andreas On Thu, Nov 6, 2008 at 2:07 AM, Raphael Andr? Bauer wrote: > hi biojava-l, > > > i am getting the following exception: > > badly formatted line ... SEQRES 3 A 76 C C A G A OMC U > OMG A A YG A PSU > org.biojava.bio.structure.io.PDBParseException: amino acid name is not > of length 3! (YG) > > > when i am trying to parse the pdb entry 4TNA [1] (a RNA structure). It > seems that YG [2] is an ordinary compound that is built into the RNA chain. > > > is this really an error inside the PDB file, or is this something > where the biojava parser confuses amino acids and hetero ids because of > their lengths? is there an approved biojava way where i can catch the > exception without breaking the rest of the parsing? > > > many thanks, > > raphael > > [1] http://bioinf-services.charite.de/supersite/resultHET.faces?hetid=YG > [2] http://bioinf-services.charite.de/supersite/resultPDB.faces?pdbid=4TNA > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > From raphael.andre.bauer at gmail.com Thu Nov 6 11:24:39 2008 From: raphael.andre.bauer at gmail.com (=?UTF-8?Q?Raphael_Andr=C3=A9_Bauer?=) Date: Thu, 6 Nov 2008 17:24:39 +0100 Subject: [Biojava-l] YG and parsing error of PDB file In-Reply-To: <59a41c430811060820o43f99eber6d52c1a288b1ad22@mail.gmail.com> References: <9b46aa30811060207t4c7bf77fx231877e9269af462@mail.gmail.com> <59a41c430811060820o43f99eber6d52c1a288b1ad22@mail.gmail.com> Message-ID: <9b46aa30811060824q6a27e1a6u49281b6e1722a947@mail.gmail.com> On Thu, Nov 6, 2008 at 5:20 PM, Andreas Prlic wrote: > Hi Raphael, > > The parsing is perhaps a bit verbose and might be misleading in this > case. It does not break or stop after printing this exception. If you > investigate the loaded structure object in the end you can see that > the toString() looks like this: ... you are right. i was a bit too quick here. one question still remains: do you know if the exception is "ok" in terms of the PDB file format or simply "wrong" because the exception thrown by the parser is wrong (or the parsing wents wrong?). if it is "wrong" i could easily fix it i guess. thanks for your help! raphael > > structure 4TNA IdCode: 4TNA Classification: AMINO-ACID TRANSPORT > DepDate: Wed Apr 12 00:00:00 PST 1978 Technique: X-RAY DIFFRACTION > Resolution: 2.5 ModDate: Tue Apr 01 00:00:00 PST 2003 Title: FURTHER > REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE > chains: > chain 0: >A< TRNAPHE > length SEQRES: 0 length ATOM: 76 aminos: 0 hetatms: 14 nucleotides: 62 > chain 1: > < > length SEQRES: 0 length ATOM: 4 aminos: 0 hetatms: 4 nucleotides: 0 > > Andreas > > On Thu, Nov 6, 2008 at 2:07 AM, Raphael Andr? Bauer > wrote: >> hi biojava-l, >> >> >> i am getting the following exception: >> >> badly formatted line ... SEQRES 3 A 76 C C A G A OMC U >> OMG A A YG A PSU >> org.biojava.bio.structure.io.PDBParseException: amino acid name is not >> of length 3! (YG) >> >> >> when i am trying to parse the pdb entry 4TNA [1] (a RNA structure). It >> seems that YG [2] is an ordinary compound that is built into the RNA chain. >> >> >> is this really an error inside the PDB file, or is this something >> where the biojava parser confuses amino acids and hetero ids because of >> their lengths? is there an approved biojava way where i can catch the >> exception without breaking the rest of the parsing? >> >> >> many thanks, >> >> raphael >> >> [1] http://bioinf-services.charite.de/supersite/resultHET.faces?hetid=YG >> [2] http://bioinf-services.charite.de/supersite/resultPDB.faces?pdbid=4TNA >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> > From engelmark at fh-bingen.de Thu Nov 6 15:33:07 2008 From: engelmark at fh-bingen.de (Markus Engel) Date: Thu, 06 Nov 2008 21:33:07 +0100 Subject: [Biojava-l] SequenceLogo Message-ID: <49135483.8000906@fh-bingen.de> Hi! I'm completely new and unfamiliar with the BioJava-Project. I'm trying to draw a sequence logo, but I have no idea how it works. A simple example or howto would be sufficient for the moment. At least I hope it is. If somebody could tell me, what I need and how it is done, I would be very grateful! best regards Markus Engel From holland at eaglegenomics.com Thu Nov 6 20:16:57 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Fri, 7 Nov 2008 01:16:57 +0000 Subject: [Biojava-l] SequenceLogo In-Reply-To: <49135483.8000906@fh-bingen.de> References: <49135483.8000906@fh-bingen.de> Message-ID: Hello. You need to do three things. First, you need to get your sequence alignment. This will involve constructing one yourself, or parsing it from a file. How you do this depends entirely on what form your alignment data is in. Second, you must convert your sequence alignment into a distribution. You can do this by using DistributionTools.distOverAlignment() and passing in your alignment: http://biojava.org/docs/api/org/biojava/bio/dist/DistributionTools.html#distOverAlignment(org.biojava.bio.symbol.Alignment) Lastly, you need to pass your distribution into an instance of DistributionLogo in order to render the logo: http://biojava.org/docs/api/org/biojava/bio/gui/DistributionLogo.html cheers, Richard 2008/11/6 Markus Engel : > Hi! > > I'm completely new and unfamiliar with the BioJava-Project. > I'm trying to draw a sequence logo, but I have no idea how it works. > A simple example or howto would be sufficient for the moment. At least I > hope it is. > If somebody could tell me, what I need and how it is done, I would be very > grateful! > > best regards > Markus Engel > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From andreas at sdsc.edu Fri Nov 7 02:26:10 2008 From: andreas at sdsc.edu (Andreas Prlic) Date: Thu, 6 Nov 2008 23:26:10 -0800 Subject: [Biojava-l] YG and parsing error of PDB file In-Reply-To: <9b46aa30811060824q6a27e1a6u49281b6e1722a947@mail.gmail.com> References: <9b46aa30811060207t4c7bf77fx231877e9269af462@mail.gmail.com> <59a41c430811060820o43f99eber6d52c1a288b1ad22@mail.gmail.com> <9b46aa30811060824q6a27e1a6u49281b6e1722a947@mail.gmail.com> Message-ID: <59a41c430811062326u79ce447eo55cd3d0b35488f5b@mail.gmail.com> Hi Raphael, I don't think anything is wrong in particular. YG is a modified nucleotide (Wybutosine, found at 3' to the anticodon, in eukaryotic tRNA-PHE). At the present, the parser reads YG as a group in the atoms section, but does not understand what YG means if found in the SEQRES. Is there anything you would like to be able to do with it? Andreas On Thu, Nov 6, 2008 at 8:24 AM, Raphael Andr? Bauer wrote: > On Thu, Nov 6, 2008 at 5:20 PM, Andreas Prlic wrote: >> Hi Raphael, >> >> The parsing is perhaps a bit verbose and might be misleading in this >> case. It does not break or stop after printing this exception. If you >> investigate the loaded structure object in the end you can see that >> the toString() looks like this: > ... you are right. i was a bit too quick here. one question still remains: do > you know if the exception is "ok" in terms of the PDB file format or > simply "wrong" > because the exception thrown by the parser is wrong (or the parsing > wents wrong?). > if it is "wrong" i could easily fix it i guess. > > thanks for your help! > > raphael > > > > > >> >> structure 4TNA IdCode: 4TNA Classification: AMINO-ACID TRANSPORT >> DepDate: Wed Apr 12 00:00:00 PST 1978 Technique: X-RAY DIFFRACTION >> Resolution: 2.5 ModDate: Tue Apr 01 00:00:00 PST 2003 Title: FURTHER >> REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE >> chains: >> chain 0: >A< TRNAPHE >> length SEQRES: 0 length ATOM: 76 aminos: 0 hetatms: 14 nucleotides: 62 >> chain 1: > < >> length SEQRES: 0 length ATOM: 4 aminos: 0 hetatms: 4 nucleotides: 0 >> >> Andreas >> >> On Thu, Nov 6, 2008 at 2:07 AM, Raphael Andr? Bauer >> wrote: >>> hi biojava-l, >>> >>> >>> i am getting the following exception: >>> >>> badly formatted line ... SEQRES 3 A 76 C C A G A OMC U >>> OMG A A YG A PSU >>> org.biojava.bio.structure.io.PDBParseException: amino acid name is not >>> of length 3! (YG) >>> >>> >>> when i am trying to parse the pdb entry 4TNA [1] (a RNA structure). It >>> seems that YG [2] is an ordinary compound that is built into the RNA chain. >>> >>> >>> is this really an error inside the PDB file, or is this something >>> where the biojava parser confuses amino acids and hetero ids because of >>> their lengths? is there an approved biojava way where i can catch the >>> exception without breaking the rest of the parsing? >>> >>> >>> many thanks, >>> >>> raphael >>> >>> [1] http://bioinf-services.charite.de/supersite/resultHET.faces?hetid=YG >>> [2] http://bioinf-services.charite.de/supersite/resultPDB.faces?pdbid=4TNA >>> _______________________________________________ >>> Biojava-l mailing list - Biojava-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/biojava-l >>> >> > From community at struck.lu Fri Nov 7 05:06:29 2008 From: community at struck.lu (community at struck.lu) Date: Fri, 07 Nov 2008 11:06:29 +0100 Subject: [Biojava-l] SCF: support for ambiguities In-Reply-To: References: Message-ID: Thank you, Daniel "Richard Holland" wrote: > This has now been applied to the trunk of biojava-live. > > cheers, > Richard > > 2008/11/3 Richard Holland : > > Thanks for the fix. I'll review this and get back to you in a couple of > days. > > > > cheers, > > Richard > > > > 2008/11/3 community at struck.lu : > >> I have added the missing ambiguities to DNATools.java and then used these > in > >> SCF.java. > >> The two patches are appended to this email. > >> > >> Greetings, > >> Daniel > >> > >> > >> "Richard Holland" wrote: > >> > >>> A patch would be much appreciated! > >>> > >>> cheers, > >>> Richard > >>> > >>> 2008/10/31 community at struck.lu : > >>> > True. It was a first quick and dirty hack to get the rest of my project > >>> going. > >>> > > >>> > I think adding support of the IUPAC ambiguities to DNATools would be the > >>> most > >>> > approbate solution. The SCF class can then easily be adapted. > >>> > > >>> > Are there any plans to do so? > >>> > If not, I could give it a try and submit a patch for DNATools and SCF. > >>> > > >>> > Greetings, > >>> > Daniel > >>> > > >>> > "Richard Holland" wrote: > >>> > > >>> >> It is the correct method, yes. > >>> >> > >>> >> However your code constructs a new hash set every time it does the > >>> >> check for W or S etc.. It would be much more efficient to create > >>> >> class-static references to the ambiguity symbols you need, instead of > >>> >> (re)creating them every time they're encountered. A class-static gap > >>> >> symbol reference would also be good in this situation. > >>> >> > >>> >> cheers, > >>> >> Richard > >>> >> > >>> >> > >>> >> > >>> >> 2008/10/31 community at struck.lu : > >>> >> > Hello, > >>> >> > > >>> >> > > >>> >> > I am using the SCF class in the context of HIV-1 population > sequencing. > >>> In > >>> >> > this context we do have sometimes ambiguous base calls. To support > them > >> I > >>> >> > extended the SCF class to allow for IUPAC ambiguities up to 2 > >>> nucleotides. > >>> >> > > >>> >> > Therefore I simply added the following code to the "decode" function: > >>> >> > > >>> >> > ######################### > >>> >> > public Symbol decode(byte call) throws IllegalSymbolException > { > >>> >> > > >>> >> > //get the DNA Alphabet > >>> >> > Alphabet dna = DNATools.getDNA(); > >>> >> > > >>> >> > char c = (char) call; > >>> >> > switch (c) { > >>> >> > case 'a': > >>> >> > case 'A': > >>> >> > return DNATools.a(); > >>> >> > case 'c': > >>> >> > case 'C': > >>> >> > return DNATools.c(); > >>> >> > case 'g': > >>> >> > case 'G': > >>> >> > return DNATools.g(); > >>> >> > case 't': > >>> >> > case 'T': > >>> >> > return DNATools.t(); > >>> >> > case 'n': > >>> >> > case 'N': > >>> >> > return DNATools.n(); > >>> >> > case '-': > >>> >> > return DNATools.getDNA().getGapSymbol(); > >>> >> > case 'w': > >>> >> > case 'W': > >>> >> > //make the 'W' symbol > >>> >> > Set symbolsThatMakeW = new HashSet(); > >>> >> > symbolsThatMakeW.add(DNATools.a()); > >>> >> > symbolsThatMakeW.add(DNATools.t()); > >>> >> > Symbol w = dna.getAmbiguity(symbolsThatMakeW); > >>> >> > return w; > >>> >> > case 's': > >>> >> > case 'S': > >>> >> > //make the 'S' symbol > >>> >> > Set symbolsThatMakeS = new HashSet(); > >>> >> > symbolsThatMakeS.add(DNATools.c()); > >>> >> > symbolsThatMakeS.add(DNATools.g()); > >>> >> > Symbol s = dna.getAmbiguity(symbolsThatMakeS); > >>> >> > return s; > >>> >> > ... (and so on) > >>> >> > ######################### > >>> >> > > >>> >> > Is this the right way to do it? And if so, how can this code be > >> submitted > >>> > to > >>> >> > the official biojava source code? > >>> >> > > >>> >> > > >>> >> > Best regards, > >>> >> > Daniel Struck > >>> >> > _________________________________________________________ > >>> >> > Mail sent using root eSolutions Webmailer - www.root.lu > >>> >> > > >>> >> > > >>> >> > _______________________________________________ > >>> >> > Biojava-l mailing list - Biojava-l at lists.open-bio.org > >>> >> > http://lists.open-bio.org/mailman/listinfo/biojava-l > >>> >> > > >>> >> > >>> >> > >>> > > >>> > > >>> > _________________________________________________________ > >>> > Mail sent using root eSolutions Webmailer - www.root.lu > >>> > > >>> > > >>> > > >>> > >>> > >> > >> > >> _________________________________________________________ > >> Mail sent using root eSolutions Webmailer - www.root.lu > >> > > > > > > > > -- > > Richard Holland, BSc MBCS > > Finance Director, Eagle Genomics Ltd > > M: +44 7500 438846 | E: holland at eaglegenomics.com > > http://www.eaglegenomics.com/ > > > > _________________________________________________________ Mail sent using root eSolutions Webmailer - www.root.lu From ixiivilibra at gmail.com Fri Nov 7 07:20:45 2008 From: ixiivilibra at gmail.com (Shenk.Time) Date: Fri, 7 Nov 2008 20:20:45 +0800 Subject: [Biojava-l] Questions about downloading sequences from DataBanks Message-ID: Hi friends! I am a preliminary learner of Biojava, and I just joined this booming organization some days ago. Apparently, Biojava is not a simple system, although there are a lot of examples on the website against so much more functions. Actually, the motivation of my starting to focus on it is I want to download sequences of genes, genomes or proteins freely and automatically. Gradually, with the progress of my learning, I found that it is a very useful tool for processing biological data. And I also like the conception model of biological entities expressed in Biojava. However, my problem still exists. I have been searching the answer for almost one month. It has disturbed me so much. How can I download the sequence data from NCBI or EBI freely, massively and automatically? Does Biojava have this function? If it does, then how can I do it? What Classes, Functions or packages should I learn? As I already knew, NCBI supports a kind of web service named 'eUtility'. The SOAP/WSDL model is recommended by them. Once, I used the Axis2 (developed by Apache) and the wsdl file (a URL on their website) to produce '*stub.java' files successfully on my computer. Because of the various versions, I had to produce groups of '*stub.java' files and *stub-like classes. And I have also tested those examples they give out. But, that is all. There is no documentation! It is difficult to understand how to use all the functions of their API by reading the source code. So, if Biojava has no ability to solve this problem, then what should I do? I want to ask some help from you precursors and colleagues. Thank you very much! Best regards. Shenk Time From holland at eaglegenomics.com Fri Nov 7 08:09:03 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Fri, 7 Nov 2008 13:09:03 +0000 Subject: [Biojava-l] Questions about downloading sequences from DataBanks In-Reply-To: References: Message-ID: Hello. The basic way of fetching a load of sequences from eutils by specifying a set of Genbank IDs can be done using this: http://biojava.org/docs/api/org/biojavax/bio/db/ncbi/GenbankRichSequenceDB.html If you want to specify more complex queries for locating sequences other than just by ID, you'll need to make a copy of GenbankRichSequenceDB and modify it to allow such queries. It uses the direct URL method for interacting with Entrez/eutils, and so with your modified class you'll be able to do anything that the webservice can do via URL requests. cheers, Richard 2008/11/7 Shenk.Time : > Hi friends! > > I am a preliminary learner of Biojava, and I just joined this booming > organization some days ago. Apparently, Biojava is not a simple system, > although there are a lot of examples on the website against so much more > functions. Actually, the motivation of my starting to focus on it is I want > to download sequences of genes, genomes or proteins freely and > automatically. Gradually, with the progress of my learning, I found that it > is a very useful tool for processing biological data. And I also like the > conception model of biological entities expressed in Biojava. However, my > problem still exists. I have been searching the answer for almost one month. > It has disturbed me so much. > > How can I download the sequence data from NCBI or EBI freely, massively and > automatically? Does Biojava have this function? If it does, then how can I > do it? What Classes, Functions or packages should I learn? > > As I already knew, NCBI supports a kind of web service named 'eUtility'. The > SOAP/WSDL model is recommended by them. Once, I used the Axis2 (developed by > Apache) and the wsdl file (a URL on their website) to produce '*stub.java' > files successfully on my computer. Because of the various versions, I had to > produce groups of '*stub.java' files and *stub-like classes. And I have also > tested those examples they give out. But, that is all. There is no > documentation! It is difficult to understand how to use all the functions of > their API by reading the source code. > > So, if Biojava has no ability to solve this problem, then what should I > do? > > I want to ask some help from you precursors and colleagues. Thank you very > much! > > > > Best regards. > > > > > > Shenk Time > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From ixiivilibra at gmail.com Sun Nov 9 01:02:51 2008 From: ixiivilibra at gmail.com (Shenk.Time) Date: Sun, 9 Nov 2008 14:02:51 +0800 Subject: [Biojava-l] questions Message-ID: Hi, Does anybody know how to build an object of a linkage in a web page? For example, http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=182086 is a standard page in NCBI (it belongs to an example in the cookbook, the ID is M98343). I want to build an object referred to keywords 'gene','CDS' and 'polyA_signal'.Then recursively, I can build objects in these pages. So I just want to ask what should I do,and what should I check in Biojava API. Thank you very much! Best -- Shenk.C.Time From aumanga at biggjapan.com Mon Nov 10 01:57:33 2008 From: aumanga at biggjapan.com (Ashika Umanga Umagiliya) Date: Mon, 10 Nov 2008 15:57:33 +0900 Subject: [Biojava-l] Blast XML output problem with multiple sequences Message-ID: <4917DB5D.6070005@biggjapan.com> Hi guys, I have a question with blastall. I use blast-2.2.18 on debian linux. I execute 'blastall' from my java application.I use m -7 parameter to get the result as an XML file. When my input file has more than one sequences like , >id 1 ytfgqgtk >id 2 leikrkr my output xml file actually contains two separate XML files appended together , like : .. .. .. .. How can i get my results in one XML file,so that i can process it easily? Thanks in advance, umanga From aumanga at biggjapan.com Mon Nov 10 02:50:20 2008 From: aumanga at biggjapan.com (Ashika Umanga Umagiliya) Date: Mon, 10 Nov 2008 16:50:20 +0900 Subject: [Biojava-l] Blast XML output with multiple sequences Message-ID: <4917E7BC.50402@biggjapan.com> Hi guys, Sorry if this mail has been posted twice.. I have a question with blastall. I use blast-2.2.18 on debian linux. I execute 'blastall' from my java application.I use m -7 parameter to get the result as an XML file. When my input file has more than one sequences like , >id 1 ytfgqgtk >id 2 leikrkr my output xml file actually contains two separate XML files appended together , like : .. .. .. .. How can i get my results in one XML file,so that i can process it easily? Thanks in advance, umanga From aumanga at biggjapan.com Mon Nov 10 03:50:54 2008 From: aumanga at biggjapan.com (Ashika Umanga Umagiliya) Date: Mon, 10 Nov 2008 17:50:54 +0900 Subject: [Biojava-l] Blast XML output with multiple sequences In-Reply-To: <4917F354.30006@imbusch.net> References: <4917E7BC.50402@biggjapan.com> <4917F354.30006@imbusch.net> Message-ID: <4917F5EE.8050608@biggjapan.com> Hi charles and all, Here is one of my actual input.txt : >seq 1 dssfyic >seq 2 dssfyic And here is the result output for this. output.xml its actually two appended XML files ???? blastp blastp 2.2.18 [Mar-02-2008] ~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs", Nucleic Acids Res. 25:3389-3402. /work/mysizuka-web/mysizouka2/src/main/webapp/WEB-INF/blast/db/tcrDB /work/mysizuka-web/mysizouka2/src/main/webapp/WEB-INF/blast/db/mabDB lcl|QUERY seq 1 7 BLOSUM62 10 11 1 F 1 6238 565098 0 4.6796e+07 0.041 0.267 0.14 No hits found blastp blastp 2.2.18 [Mar-02-2008] ~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs", Nucleic Acids Res. 25:3389-3402. /work/mysizuka-web/mysizouka2/src/main/webapp/WEB-INF/blast/db/tcrDB /work/mysizuka-web/mysizouka2/src/main/webapp/WEB-INF/blast/db/mabDB lcl|QUERY seq 2 7 BLOSUM62 10 11 1 F 1 6238 565098 0 4.6796e+07 0.041 0.267 0.14 No hits found Charles Imbusch wrote: > Hello Umanga, > > in my understanding blast always writes all results to one file > according to the sequences specified in the input file. > > So you could split the input file with multiple sequences into > files containing one sequence each. > > cheers, > Charles > > From charles at imbusch.net Mon Nov 10 03:39:48 2008 From: charles at imbusch.net (Charles Imbusch) Date: Mon, 10 Nov 2008 09:39:48 +0100 Subject: [Biojava-l] Blast XML output with multiple sequences In-Reply-To: <4917E7BC.50402@biggjapan.com> References: <4917E7BC.50402@biggjapan.com> Message-ID: <4917F354.30006@imbusch.net> Hello Umanga, in my understanding blast always writes all results to one file according to the sequences specified in the input file. So you could split the input file with multiple sequences into files containing one sequence each. cheers, Charles From raphael.andre.bauer at gmail.com Mon Nov 10 08:05:13 2008 From: raphael.andre.bauer at gmail.com (=?UTF-8?Q?Raphael_Andr=C3=A9_Bauer?=) Date: Mon, 10 Nov 2008 14:05:13 +0100 Subject: [Biojava-l] YG and parsing error of PDB file In-Reply-To: <59a41c430811062326u79ce447eo55cd3d0b35488f5b@mail.gmail.com> References: <9b46aa30811060207t4c7bf77fx231877e9269af462@mail.gmail.com> <59a41c430811060820o43f99eber6d52c1a288b1ad22@mail.gmail.com> <9b46aa30811060824q6a27e1a6u49281b6e1722a947@mail.gmail.com> <59a41c430811062326u79ce447eo55cd3d0b35488f5b@mail.gmail.com> Message-ID: <9b46aa30811100505w7046cd5cl8bea465ae36d0995@mail.gmail.com> On Fri, Nov 7, 2008 at 8:26 AM, Andreas Prlic wrote: > Hi Raphael, > > I don't think anything is wrong in particular. YG is a modified > nucleotide (Wybutosine, found at 3' to the anticodon, in eukaryotic > tRNA-PHE). At the present, the parser reads YG as a group in the > atoms section, but does not understand what YG means if found in the > SEQRES. Is there anything you would like to be able to do with it? I think how it is handled now is ok for me (just a short notice about the unknown YG). Thanks! Raphael > > Andreas > > > > > On Thu, Nov 6, 2008 at 8:24 AM, Raphael Andr? Bauer > wrote: >> On Thu, Nov 6, 2008 at 5:20 PM, Andreas Prlic wrote: >>> Hi Raphael, >>> >>> The parsing is perhaps a bit verbose and might be misleading in this >>> case. It does not break or stop after printing this exception. If you >>> investigate the loaded structure object in the end you can see that >>> the toString() looks like this: >> ... you are right. i was a bit too quick here. one question still remains: do >> you know if the exception is "ok" in terms of the PDB file format or >> simply "wrong" >> because the exception thrown by the parser is wrong (or the parsing >> wents wrong?). >> if it is "wrong" i could easily fix it i guess. >> >> thanks for your help! >> >> raphael >> >> >> >> >> >>> >>> structure 4TNA IdCode: 4TNA Classification: AMINO-ACID TRANSPORT >>> DepDate: Wed Apr 12 00:00:00 PST 1978 Technique: X-RAY DIFFRACTION >>> Resolution: 2.5 ModDate: Tue Apr 01 00:00:00 PST 2003 Title: FURTHER >>> REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE >>> chains: >>> chain 0: >A< TRNAPHE >>> length SEQRES: 0 length ATOM: 76 aminos: 0 hetatms: 14 nucleotides: 62 >>> chain 1: > < >>> length SEQRES: 0 length ATOM: 4 aminos: 0 hetatms: 4 nucleotides: 0 >>> >>> Andreas >>> >>> On Thu, Nov 6, 2008 at 2:07 AM, Raphael Andr? Bauer >>> wrote: >>>> hi biojava-l, >>>> >>>> >>>> i am getting the following exception: >>>> >>>> badly formatted line ... SEQRES 3 A 76 C C A G A OMC U >>>> OMG A A YG A PSU >>>> org.biojava.bio.structure.io.PDBParseException: amino acid name is not >>>> of length 3! (YG) >>>> >>>> >>>> when i am trying to parse the pdb entry 4TNA [1] (a RNA structure). It >>>> seems that YG [2] is an ordinary compound that is built into the RNA chain. >>>> >>>> >>>> is this really an error inside the PDB file, or is this something >>>> where the biojava parser confuses amino acids and hetero ids because of >>>> their lengths? is there an approved biojava way where i can catch the >>>> exception without breaking the rest of the parsing? >>>> >>>> >>>> many thanks, >>>> >>>> raphael >>>> >>>> [1] http://bioinf-services.charite.de/supersite/resultHET.faces?hetid=YG >>>> [2] http://bioinf-services.charite.de/supersite/resultPDB.faces?pdbid=4TNA >>>> _______________________________________________ >>>> Biojava-l mailing list - Biojava-l at lists.open-bio.org >>>> http://lists.open-bio.org/mailman/listinfo/biojava-l >>>> >>> >> > From anisahghoorah at hotmail.com Mon Nov 10 11:35:19 2008 From: anisahghoorah at hotmail.com (Anisah Ghoorah) Date: Mon, 10 Nov 2008 16:35:19 +0000 Subject: [Biojava-l] blast parser multiple iteration Message-ID: Hi Does BioJava 1.6 BlastXMLParser handle multiple iteration entries in the blast output xml file? Thanks Anisah Hi Ali, that's good news, can you send your patch to this list, so we can have a look? At this stage it would be also great to provide a new Junit test that makes sure that the parsing works ok and to demonstrate the new feature. If you provide more patches in the future we can also set up write access to the SVN repository. Andreas On Tue, Aug 19, 2008 at 6:10 AM, Muhammad Ali wrote: > Hello, > > The current version of the BlastXMLParser (used for parsing NCBI BLAST > output files) is not handling multiple Iteration entries in the file > correctly. It lumps them all together, resulting in a loss of > search-specific parameters. The end result is a single > SeqSimilaritySearchResult object. The expected output should be one > SeqSimilaritySearchResult for each Iteration entry in the file. > > I've fixed this issue on my locally checked out copy by modifying a > few files in the org.biojava.bio.program.sax.blastxml package. I'm > interested in submitting the updated code back to the main repository. > Can someone tell me how I can go about doing so? > > Also the javadocs for the BlastXMLParser seem to be outdated. They > mention malformed XML being generated by NCBI, but that doesn't seem > to be the case anymore. > > Thanks, > Ali. > _______________________________________________ > biojava-dev mailing list > biojava-dev at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-dev > _________________________________________________________________ Win ?1000 John Lewis shopping sprees with BigSnapSearch.com http://clk.atdmt.com/UKM/go/117442309/direct/01/ From aumanga at biggjapan.com Wed Nov 12 04:12:52 2008 From: aumanga at biggjapan.com (Ashika Umanga Umagiliya) Date: Wed, 12 Nov 2008 18:12:52 +0900 Subject: [Biojava-l] Retrieve PDB file from id Message-ID: <491A9E14.2040606@biggjapan.com> Hi guys, I am going to embedd JMol applet into my web application.And i want to retrieve PDB file from a remote database when the PDBID is given. Then I can load it with JMol. Is there such service which I can use ? thanks in advance, umanga From aumanga at biggjapan.com Wed Nov 12 04:16:49 2008 From: aumanga at biggjapan.com (Ashika Umanga Umagiliya) Date: Wed, 12 Nov 2008 18:16:49 +0900 Subject: [Biojava-l] Retrieve PDB file from id In-Reply-To: <491A9E14.2040606@biggjapan.com> References: <491A9E14.2040606@biggjapan.com> Message-ID: <491A9F01.3060403@biggjapan.com> Hi guys, I came up with this webservice : WSDBFetch service provided by the European Bioinformatics Institute I guess this service will do what i needed. thanks Ashika Umanga Umagiliya wrote: > Hi guys, > > I am going to embedd JMol applet into my web application.And i want to > retrieve PDB file from a remote database when the PDBID is given. > Then I can load it with JMol. > Is there such service which I can use ? > > thanks in advance, > umanga > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > From jw12 at sanger.ac.uk Wed Nov 12 06:12:31 2008 From: jw12 at sanger.ac.uk (Jonathan Warren) Date: Wed, 12 Nov 2008 11:12:31 +0000 Subject: [Biojava-l] Sharing and Collecting Biological Annotations Message-ID: <1226488351.4881.46.camel@deskpro20727.dynamic.sanger.ac.uk> DAS is currently being used to share annotations on genomes, protein alignments, structural and interaction information. If you are interested in sharing biological information the DAS workshop below may be of interest to you. Registration is open for the 2009 DAS workshop (8,9,10th March) at the Genome Campus, Hinxton UK. If you are interested in attending, please find out more by going to http://www.dasregistry.org/course.jsp and register via the web link at the bottom of the page. This workshop will cater for novice to expert DAS users as each day is optional. Closing date for registration is 1st Feb 2009. If you register now you can change the details of your registration any time up until this closing date. Please register early as places will be limited. Also if you would be interested in presenting your work please write to Jonathan Warren at jw12 at sanger.ac.uk with a synopsis and a title. -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. From andreas at sdsc.edu Wed Nov 12 10:45:37 2008 From: andreas at sdsc.edu (Andreas Prlic) Date: Wed, 12 Nov 2008 07:45:37 -0800 Subject: [Biojava-l] Retrieve PDB file from id In-Reply-To: <491A9E14.2040606@biggjapan.com> References: <491A9E14.2040606@biggjapan.com> Message-ID: <59a41c430811120745p5ec5fa6gea1957ad36e5f46b@mail.gmail.com> Hi Ashika, this is more a question for the Jmol mailing list, but to give you a quick reply: the jmol applet can load the PDB files directly from a server, you don;t need to pre-load it... If you want to load a PDB file from remote you can also talk to the RCSB or EBI ftp servers. Cheers, Andreas On Wed, Nov 12, 2008 at 1:12 AM, Ashika Umanga Umagiliya wrote: > Hi guys, > > I am going to embedd JMol applet into my web application.And i want to > retrieve PDB file from a remote database when the PDBID is given. > Then I can load it with JMol. > Is there such service which I can use ? > > thanks in advance, > umanga > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > From pzgyuanf at gmail.com Sat Nov 15 01:11:47 2008 From: pzgyuanf at gmail.com (pprun) Date: Sat, 15 Nov 2008 14:11:47 +0800 Subject: [Biojava-l] An Exception Has Occurred During Parsing ensembl Genbank file Homo_sapiens.0.dat Message-ID: Environments: ------------- Biojava: 1.6 Java: 1.6.0_10; Java HotSpot(TM) Client VM 11.0-b15 System: Linux version 2.6.24-21-generic running on i386; UTF-8; zh_CN The detail: -------------- Format_object=org.biojavax.bio.seq.io.GenbankFormat Accession=chromosome:NCBI36:X:101815144:102815143:1 Id=null Comments=Bad dbxref Parse_block=FEATURES Location/Qualifierssource 1..1000000/organism "Homo sapiens"/db_xref "taxon:9606"gene complement(5148..5254)/gene ENSG00000193147/locus_tag "AL035427.17"misc_RNA complement(5148..5254)/gene "ENSG00000193147"/db_xref "Clone_based_ensembl_transcri:AL035427.17-201"/db_xref "RFAM:RF00026"/db_xref "AFFY_HuEx_1_0_st_v2:3985294"/note "snRNA"/note "transcript_id=ENST00000348857"gene 32225..32681/gene ENSG00000220050/locus_tag "RP4-769N13.2"misc_RNA 32225..32681/gene "ENSG00000220050"/db_xref "AgilentProbe:A_32_P940920"/db_xref "Clone_based_vega_transcript:RP4-769N13.2-001"/db_xref "OTTT:OTTHUMT00000057625"/note "processed_pseudogene"/note "transcript_id=ENST00000405532"gene 38617..44173/gene ENSG00000158301/locus_tag "GPRASP2"/note "G-protein coupled receptor-associated sorting protein 2 (GASP-2). [Source:Uniprot/SWISSPROT;Acc:Q96D09]"mRNA join(38617..38993,40223..40290,40630..40707,40978..44173)/gene "ENSG00000158301"/note "transcript_id=ENST00000332262"CDS 41311..43827/gene "ENSG00000158301"/protein_id "ENSP00000339057"/note "transcript_id=ENST00000332262"/db_xref "HGNC:GPRASP2"/db_xref "CCDS:CCDS14501.1"/db_xref "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref "RefSeq_peptide:NP_001004051.1"/db_xref "RefSeq_peptide:NP_612446.1"/db_xref "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:GPRASP2-001"/db_xref "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref "UniGene:Hs.603154"/db_xref "protein_id:AAH13576.1"/db_xref "protein_id:AAH36772.1"/db_xref "protein_id:BAC04010.1"/db_xref "protein_id:BAC04692.1"/db_xref "protein_id:CAI43060.1"/db_xref "AFFY_HG_U133B:228027_at"/db_xref "AFFY_HG_U133_Plus_2:228027_at"/db_xref "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref "AFFY_HuEx_1_0_st_v2:4016236"/db_xref "AFFY_HuEx_1_0_st_v2:4016243"/db_xref "AFFY_HuEx_1_0_st_v2:4016244"/db_xref "AFFY_HuEx_1_0_st_v2:4016261"/db_xref "AFFY_HuEx_1_0_st_v2:4016262"/db_xref "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref "Illumina_V2:ILMN_8313"/db_xref "OTTT:OTTHUMT00000057626"/db_xref "shares_CDS_with_OTTT:GPRASP2-001"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057626"/translation "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"mRNA join(38853..38993,39571..39658,40223..40290,40630..40707, 40978..44173)/gene "ENSG00000158301"/note "transcript_id=ENST00000340885"CDS 41311..43827/gene "ENSG00000158301"/protein_id "ENSP00000342986"/note "transcript_id=ENST00000340885"/db_xref "CCDS:CCDS14501.1"/db_xref "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref "RefSeq_peptide:NP_001004051.1"/db_xref "RefSeq_peptide:NP_612446.1"/db_xref "RefSeq_dna:NM_001004051"/db_xref "RefSeq_dna:NM_138437"/db_xref "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref "HGNC_automatic_transcript:GPRASP2-201"/db_xref "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref "UniGene:Hs.603154"/db_xref "UniGene:Hs.656888"/db_xref "protein_id:AAH13576.1"/db_xref "protein_id:AAH36772.1"/db_xref "protein_id:BAC04010.1"/db_xref "protein_id:BAC04692.1"/db_xref "protein_id:CAI43060.1"/db_xref "AFFY_HG_U133B:228027_at"/db_xref "AFFY_HG_U133_Plus_2:228027_at"/db_xref "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref "AFFY_HuEx_1_0_st_v2:4016244"/db_xref "AFFY_HuEx_1_0_st_v2:4016261"/db_xref "AFFY_HuEx_1_0_st_v2:4016262"/db_xref "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref "Illumina_V2:ILMN_8313"/translation "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"gene 47167..79981/gene ENSG00000198908/locus_tag "BHLHB9"/note "Protein BHLHB9 (bHLHB9) (Transcription regulator of 60 kDa) (p60TRP). [Source:Uniprot/SWISSPROT;Acc:Q6PI77]"mRNA join(47167..47262,47398..47532,75140..78879)/gene "ENSG00000198908"/note "transcript_id=ENST00000372738"CDS 75437..77080/gene "ENSG00000198908"/protein_id "ENSP00000361823"/note "transcript_id=ENST00000372738"/db_xref "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref "RefSeq_peptide:NP_085142.1"/db_xref "RefSeq_dna:NM_030639"/db_xref "EntrezGene:BHLHB9"/db_xref "AgilentProbe:A_23_P308954"/db_xref "AgilentProbe:A_32_P348800"/db_xref "AgilentProbe:A_32_P796164"/db_xref "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-002"/db_xref "IPI:IPI00513802.1"/db_xref "UniGene:Hs.4276"/db_xref "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref "AFFY_HG_U133_Plus_2:213709_at"/db_xref "AFFY_HuEx_1_0_st_v2:3937803"/db_xref "AFFY_HuEx_1_0_st_v2:4016264"/db_xref "AFFY_HuEx_1_0_st_v2:4016266"/db_xref "AFFY_HuEx_1_0_st_v2:4016274"/db_xref "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref "OTTT:OTTHUMT00000057631"/db_xref "shares_CDS_with_OTTT:BHLHB9-002"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057631"/translation "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"mRNA join(47167..47262,47398..47532,75140..78879)/gene "ENSG00000198908"/note "transcript_id=ENST00000361229"CDS 75368..77080/gene "ENSG00000198908"/protein_id "ENSP00000354675"/note "transcript_id=ENST00000361229"/db_xref "HGNC:BHLHB9"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref "AgilentProbe:A_23_P308954"/db_xref "AgilentProbe:A_32_P348800"/db_xref "AgilentProbe:A_32_P796164"/db_xref "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_automatic_transcript:BHLHB9-201"/db_xref "IPI:IPI00513802.1"/db_xref "IPI:IPI00844393.1"/db_xref "UniGene:Hs.4276"/db_xref "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref "AFFY_HG_U133_Plus_2:213709_at"/db_xref "AFFY_HuEx_1_0_st_v2:3937803"/db_xref "AFFY_HuEx_1_0_st_v2:4016264"/db_xref "AFFY_HuEx_1_0_st_v2:4016266"/db_xref "AFFY_HuEx_1_0_st_v2:4016274"/db_xref "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/translation "DFDLGHIENQGQDWTGPYNWASTMAGTKNKTRAQAKTEKKAAIQ AKAGAEREATGVVRPVAKTRAKAKAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPK TLGKAMGDFTPKAGNESTSSTCKNEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKN DKPEIGAQVCAEELEPAAGADCKPRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSR IVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAE ENACSLPVATACRPSRNTRSCSQPIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFA CPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTL IESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLK ILGQLTTDFVHHYIVANYFSELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMK ALAALKLIFNQKEAKANLVSGVAIFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEI IETM"mRNA join(72535..72615,74026..74137,74258..74352,75140..79981)/gene "ENSG00000198908"/note "transcript_id=ENST00000372735"CDS 75437..77080/gene "ENSG00000198908"/protein_id "ENSP00000361820"/note "transcript_id=ENST00000372735"/db_xref "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref "AgilentCGH:A_14_P200664"/db_xref "AgilentProbe:A_23_P308954"/db_xref "AgilentProbe:A_32_P348800"/db_xref "AgilentProbe:A_32_P796164"/db_xref "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-001"/db_xref "IPI:IPI00513802.1"/db_xref "UniGene:Hs.603894"/db_xref "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref "AFFY_HG_U133_Plus_2:213709_at"/db_xref "AFFY_HuEx_1_0_st_v2:3937803"/db_xref "AFFY_HuEx_1_0_st_v2:4016224"/db_xref "AFFY_HuEx_1_0_st_v2:4016270"/db_xref "AFFY_HuEx_1_0_st_v2:4016274"/db_xref "AFFY_HuEx_1_0_st_v2:4016276"/db_xref "AFFY_HuEx_1_0_st_v2:4016277"/db_xref "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref "Codelink:GE54272"/db_xref "Codelink:GE822399"/db_xref "Illumina_V1:GI_14769619-S"/db_xref "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref "OTTP:59431"/db_xref "OTTP:OTTHUMP00000023715"/db_xref "OTTT:OTTHUMT00000057630"/translation "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"gene 99642..99712/gene ENSG00000209002/locus_tag "AL035427.17"misc_RNA 99642..99712/gene "ENSG00000209002"/db_xref "Clone_based_ensembl_transcri:AL035427.17-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386267"gene 112108..113045/gene ENSG00000216245/locus_tag "RP11-522L3.1"misc_RNA 112108..113045/gene "ENSG00000216245"/db_xref "Clone_based_vega_transcript:RP11-522L3.1-001"/db_xref "OTTT:OTTHUMT00000057652"/note "processed_pseudogene"/note "transcript_id=ENST00000404960"gene 113050..113109/gene ENSG00000208995/locus_tag "AL590407.8"misc_RNA 113050..113109/gene "ENSG00000208995"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386260"gene 113185..113253/gene ENSG00000208993/locus_tag "AL590407.8"misc_RNA 113185..113253/gene "ENSG00000208993"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386258"gene 113254..114828/gene ENSG00000218436/locus_tag "RP11-522L3.2"misc_RNA join(113254..113638,114269..114828)/gene "ENSG00000218436"/db_xref "Clone_based_vega_transcript:RP11-522L3.2-001"/db_xref "OTTT:OTTHUMT00000057653"/note "processed_pseudogene"/note "transcript_id=ENST00000403360"gene 122692..123510/gene ENSG00000220260/locus_tag "RP11-522L3.3"misc_RNA join(122692..122931,123275..123510)/gene "ENSG00000220260"/db_xref "Clone_based_vega_transcript:RP11-522L3.3-001"/db_xref "AFFY_HuEx_1_0_st_v2:4016279"/db_xref "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057654"/note "processed_pseudogene"/note "transcript_id=ENST00000407716"gene complement(123532..123603)/gene ENSG00000208991/locus_tag "AL590407.8"misc_RNA complement(123532..123603)/gene "ENSG00000208991"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386256"gene 123970..124556/gene ENSG00000219427/locus_tag "RP11-522L3.4"misc_RNA 123970..124556/gene "ENSG00000219427"/db_xref "Clone_based_vega_transcript:RP11-522L3.4-001"/db_xref "AFFY_HuEx_1_0_st_v2:4016279"/db_xref "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057655"/note "processed_pseudogene"/note "transcript_id=ENST00000406243"gene 124837..126001/gene ENSG00000218342/locus_tag "RP11-522L3.5"misc_RNA join(124837..125403,125910..126001)/gene "ENSG00000218342"/db_xref "Clone_based_vega_transcript:RP11-522L3.5-001"/db_xref "OTTT:OTTHUMT00000057656"/note "processed_pseudogene"/note "transcript_id=ENST00000407350"gene 126004..126327/gene ENSG00000220461/locus_tag "RP11-522L3.6"misc_RNA 126004..126327/gene "ENSG00000220461"/db_xref "Clone_based_vega_transcript:RP11-522L3.6-001"/db_xref "OTTT:OTTHUMT00000057657"/note "processed_pseudogene"/note "transcript_id=ENST00000403529"gene 126383..127840/gene ENSG00000220086/locus_tag "RP11-522L3.7"misc_RNA join(126383..127532,127754..127840)/gene "ENSG00000220086"/db_xref "Clone_based_vega_transcript:RP11-522L3.7-001"/db_xref "OTTT:OTTHUMT00000057648"/note "processed_pseudogene"/note "transcript_id=ENST00000405058"gene 127842..127907/gene ENSG00000208988/locus_tag "AL590407.8"misc_RNA 127842..127907/gene "ENSG00000208988"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386253"gene 129354..129411/gene ENSG00000208986/locus_tag "AL590407.8"misc_RNA 129354..129411/gene "ENSG00000208986"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386251"gene 129412..129481/gene ENSG00000208977/locus_tag "AL590407.8"misc_RNA 129412..129481/gene "ENSG00000208977"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386242"gene 129482..132579/gene ENSG00000216547/locus_tag "RP11-522L3.8"misc_RNA join(129482..129726,131073..132579)/gene "ENSG00000216547"/db_xref "Clone_based_vega_transcript:RP11-522L3.8-001"/db_xref "AFFY_HuEx_1_0_st_v2:2778904"/db_xref "OTTT:OTTHUMT00000057649"/note "processed_pseudogene"/note "transcript_id=ENST00000402841"gene complement(132605..133087)/gene ENSG00000217506/locus_tag "RP11-522L3.9"misc_RNA complement(132605..133087)/gene "ENSG00000217506"/db_xref "Clone_based_vega_transcript:RP11-522L3.9-001"/db_xref "OTTT:OTTHUMT00000057650"/note "processed_pseudogene"/note "transcript_id=ENST00000403019"gene 133182..134268/gene ENSG00000218097/locus_tag "RP11-522L3.11"misc_RNA 133182..134268/gene "ENSG00000218097"/db_xref "Clone_based_vega_transcript:RP11-522L3.11-001"/db_xref "AFFY_HuEx_1_0_st_v2:4016280"/db_xref "AFFY_HuGene_1_0_st_v1:8174199"/db_xref "OTTT:OTTHUMT00000057651"/note "processed_pseudogene"/note "transcript_id=ENST00000401627"gene complement(134334..134386)/gene ENSG00000208972/locus_tag "AL590407.8"misc_RNA complement(134334..134386)/gene "ENSG00000208972"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386237"gene 135559..135629/gene ENSG00000208969/locus_tag "AL590407.8"misc_RNA 135559..135629/gene "ENSG00000208969"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386234"gene 136559..136627/gene ENSG00000208964/locus_tag "AL590407.8"misc_RNA 136559..136627/gene "ENSG00000208964"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386229"gene 263713..264741/gene ENSG00000102128/locus_tag "RAB40AL"/note "Ras-related protein Rab-40A-like (Ras-like GTPase). [Source:Uniprot/SWISSPROT;Acc:P0C0E4]"mRNA 263713..264741/gene "ENSG00000102128"/note "transcript_id=ENST00000218249"CDS 263760..264596/gene "ENSG00000102128"/protein_id "ENSP00000218249"/note "transcript_id=ENST00000218249"/db_xref "HGNC:RAB40AL"/db_xref "CCDS:CCDS35353.1"/db_xref "Uniprot/SWISSPROT:RB40L_HUMAN"/db_xref "RefSeq_peptide:NP_001027004.1"/db_xref "RefSeq_dna:NM_001031834"/db_xref "EntrezGene:RAB40AL"/db_xref "AgilentProbe:A_32_P88717"/db_xref "AgilentProbe:A_32_P88719"/db_xref "EMBL:BC101169"/db_xref "EMBL:BC101170"/db_xref "EMBL:BC101171"/db_xref "EMBL:BC101172"/db_xref "EMBL:Z95624"/db_xref "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref "GO:GO:0005739"/db_xref "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40AL-001"/db_xref "IPI:IPI00555763.1"/db_xref "MIM_GENE:300405"/db_xref "UniGene:Hs.449517"/db_xref "protein_id:AAI01170.1"/db_xref "protein_id:AAI01171.1"/db_xref "protein_id:AAI01172.1"/db_xref "protein_id:AAI01173.1"/db_xref "protein_id:CAB09136.1"/db_xref "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref "AFFY_HG_U133_Plus_2:215782_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985604"/db_xref "AFFY_HuEx_1_0_st_v2:3985605"/db_xref "AFFY_HuEx_1_0_st_v2:4016299"/db_xref "AFFY_HuGeneFL:Z95624_at"/db_xref "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref "Illumina_V2:ILMN_24932"/db_xref "OTTT:OTTHUMT00000057679"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057679"/db_xref "shares_CDS_with_OTTT:RAB40AL-001"/translation "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYS HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN FNIIESFTELARIVLLRHRLNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIAL RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCK IS"gene 333902..334513/gene ENSG00000219659/locus_tag "LL0XNC01-73E8.1"misc_RNA 333902..334513/gene "ENSG00000219659"/db_xref "Clone_based_vega_transcript:LL0XNC01-73E8.1-001"/db_xref "OTTT:OTTHUMT00000057683"/note "processed_pseudogene"/note "transcript_id=ENST00000406951"gene complement(389101..390681)/gene ENSG00000133169/locus_tag "BEX1"/note "Protein BEX1 (Brain-expressed X-linked protein 1). [Source:Uniprot/SWISSPROT;Acc:Q9HBH7]"mRNA join(complement(390537..390681), complement(390083..390172),complement(389101..389720))/gene "ENSG00000133169"/note "transcript_id=ENST00000372728"CDS complement(389338..389715)/gene "ENSG00000133169"/protein_id "ENSP00000361813"/note "transcript_id=ENST00000372728"/db_xref "HGNC:BEX1"/db_xref "CCDS:CCDS35354.1"/db_xref "Uniprot/SWISSPROT:BEX1_HUMAN"/db_xref "RefSeq_peptide:NP_060946.3"/db_xref "RefSeq_dna:NM_018476"/db_xref "EntrezGene:BEX1"/db_xref "AgilentProbe:A_23_P159952"/db_xref "AgilentProbe:A_32_P168503"/db_xref "EMBL:AF183416"/db_xref "EMBL:AF220189"/db_xref "EMBL:AF237783"/db_xref "EMBL:AK290958"/db_xref "EMBL:AL008708"/db_xref "EMBL:AY833561"/db_xref "EMBL:BC126427"/db_xref "EMBL:BC126429"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "GO:GO:0007275"/db_xref "GO:GO:0007399"/db_xref "GO:GO:0030154"/db_xref "HGNC_curated_transcript:BEX1-001"/db_xref "IPI:IPI00020533.4"/db_xref "MIM_GENE:300690"/db_xref "protein_id:AAF67654.1"/db_xref "protein_id:AAG09685.1"/db_xref "protein_id:AAG09752.1"/db_xref "protein_id:AAI26428.1"/db_xref "protein_id:AAI26430.1"/db_xref "protein_id:AAX40679.1"/db_xref "protein_id:BAF83647.1"/db_xref "protein_id:CAI42418.1"/db_xref "AFFY_HG_U133A:218332_at"/db_xref "AFFY_HG_U133A_2:218332_at"/db_xref "AFFY_HG_U133_Plus_2:218332_at"/db_xref "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref "AFFY_HuEx_1_0_st_v2:3985407"/db_xref "AFFY_HuEx_1_0_st_v2:3985408"/db_xref "AFFY_U133_X3P:g8923715_3p_at"/db_xref "Codelink:GE82387"/db_xref "Illumina_V1:GI_15147227-S"/db_xref "Illumina_V2:ILMN_23116"/db_xref "OTTT:OTTHUMT00000058925"/db_xref "shares_CDS_with_OTTT:BEX1-001"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058925"/translation "MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYC VPRGNRRRFRVRQPILQYRWDMMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLS HSLRAVSTDPPHHDHHDEFCLMP"gene complement(395306..395427)/gene ENSG00000221010/locus_tag "AL008708.4"misc_RNA complement(395306..395427)/gene "ENSG00000221010"/db_xref "Clone_based_ensembl_transcri:AL008708.4-201"/note "miRNA"/note "transcript_id=ENST00000408083"gene complement(402265..419540)/gene ENSG00000147206/locus_tag "NXF3"/note "Nuclear RNA export factor 3 (TAP-like protein 3) (TAPL-3). [Source:Uniprot/SWISSPROT;Acc:Q9H4D5]"mRNA join(complement(419437..419535), complement(411156..411324),complement(410783..410936), complement(410050..410133),complement(409839..409943), complement(409634..409714),complement(409445..409514), complement(409201..409289),complement(408696..408805), complement(407017..407053),complement(406589..406657), complement(406454..406509),complement(406204..406311), complement(406025..406083),complement(405800..405915), complement(405662..405704),complement(405001..405073), complement(404055..404187),complement(402682..402742), complement(402265..402441))/gene "ENSG00000147206"/note "transcript_id=ENST00000395065"CDS join(complement(419437..419464), complement(411156..411324),complement(410783..410936), complement(410050..410133),complement(409839..409943), complement(409634..409714),complement(409445..409514), complement(409201..409289),complement(408696..408805), complement(407017..407053),complement(406589..406657), complement(406454..406509),complement(406204..406311), complement(406025..406083),complement(405800..405915), complement(405662..405704),complement(405001..405073), complement(404055..404187),complement(402731..402742))/gene "ENSG00000147206"/protein_id "ENSP00000378504"/note "transcript_id=ENST00000395065"/db_xref "CCDS:CCDS14503.1"/db_xref "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref "RefSeq_peptide:NP_071335.1"/db_xref "RefSeq_dna:NM_022052"/db_xref "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref "GO:GO:0003729"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "GO:GO:0006810"/db_xref "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref "HGNC_curated_transcript:NXF3-001"/db_xref "IPI:IPI00004930.5"/db_xref "IPI:IPI00552760.2"/db_xref "MIM_GENE:300316"/db_xref "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref "AFFY_HG_U133A:220110_s_at"/db_xref "AFFY_HG_U133A_2:220110_s_at"/db_xref "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref "AFFY_HG_U95E:89668_at"/db_xref "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref "Illumina_V1:GI_11545756-S"/db_xref "Illumina_V2:ILMN_19573"/db_xref "OTTT:OTTHUMT00000057684"/db_xref "shares_CDS_with_OTTT:NXF3-001"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057684"/translation "MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSS SHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRME GNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENA SIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQ EALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPG EKCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGS FFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCK FFKDSRNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLC FSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFT LVPTAFSSSVPAFSQEQQKMLPS"mRNA join(complement(419437..419540), complement(411156..411324),complement(410783..410936), complement(410050..410133),complement(409839..409943), complement(409634..409714),complement(409445..409514), complement(409201..409289),complement(408696..408805), complement(407017..407053),complement(406589..406657), complement(406454..406509),complement(406204..406311), complement(406025..406083),complement(405800..405915), complement(405662..405704),complement(405001..405073), complement(404055..404187),complement(402682..402742), complement(402265..402441))/gene "ENSG00000147206"/note "transcript_id=ENST00000372709"CDS join(complement(419437..419539), complement(411156..411324),complement(410783..410936), complement(410050..410133),complement(409839..409943), complement(409634..409714),complement(409445..409514), complement(409201..409289),complement(408696..408805), complement(407017..407053),complement(406589..406657), complement(406454..406509),complement(406204..406311), complement(406025..406083),complement(405800..405915), complement(405662..405704),complement(405001..405073), complement(404055..404187),complement(402731..402742))/gene "ENSG00000147206"/protein_id "ENSP00000361794"/note "transcript_id=ENST00000372709"/db_xref "HGNC:NXF3"/db_xref "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref "RefSeq_peptide:NP_071335.1"/db_xref "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref "GO:GO:0003729"/db_xref "GO:GO:0003729"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "GO:GO:0005737"/db_xref "GO:GO:0006810"/db_xref "GO:GO:0016973"/db_xref "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref "HGNC_automatic_transcript:NXF3-201"/db_xref "IPI:IPI00004930.5"/db_xref "IPI:IPI00552760.2"/db_xref "IPI:IPI00872823.1"/db_xref "MIM_GENE:300316"/db_xref "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref "AFFY_HG_U133A:220110_s_at"/db_xref "AFFY_HG_U133A_2:220110_s_at"/db_xref "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref "AFFY_HG_U95E:89668_at"/db_xref "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref "Illumina_V1:GI_11545756-S"/db_xref "Illumina_V2:ILMN_19573"/translation "LNLLQTPVPRPHRFSSREPYKDIGKMSLPSGHTTGHTDQVVQRR ARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRK GSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQN ECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASL DVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSILELFPKLLCL DGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSA YHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDIVDSLS ALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSS SLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS"gene 413637..415717/gene ENSG00000217368/locus_tag "LL0XNC01-221F2.2"misc_RNA 413637..415717/gene "ENSG00000217368"/db_xref "RefSeq_dna_predicted:XR_037041"/db_xref "RefSeq_dna_predicted:XR_037455"/db_xref "RefSeq_dna_predicted:XR_039021"/db_xref "Clone_based_vega_transcript:LL0XNC01-221F2.2- 001"/db_xref "AFFY_HuEx_1_0_st_v2:3588353"/db_xref "AFFY_HuEx_1_0_st_v2:4016361"/db_xref "AFFY_HuEx_1_0_st_v2:4016362"/db_xref "AFFY_HuEx_1_0_st_v2:4016363"/db_xref "AFFY_U133_X3P:Hs.195728.0.A1_3p_at"/db_xref "OTTT:OTTHUMT00000057692"/note "processed_pseudogene"/note "transcript_id=ENST00000403064"gene complement(482560..482652)/gene ENSG00000200662/locus_tag "AL035494.8"misc_RNA complement(482560..482652)/gene "ENSG00000200662"/db_xref "Clone_based_ensembl_transcri:AL035494.8-201"/db_xref "RFAM:RF00019"/note "misc_RNA"/note "transcript_id=ENST00000363792"gene complement(532453..533340)/gene ENSG00000220705/locus_tag "RP4-635G19.1"misc_RNA complement(532453..533340)/gene "ENSG00000220705"/db_xref "Clone_based_vega_transcript:RP4-635G19.1-001"/db_xref "AFFY_HuEx_1_0_st_v2:2670016"/db_xref "AFFY_HuEx_1_0_st_v2:3985483"/db_xref "AFFY_HuEx_1_0_st_v2:3985484"/db_xref "AFFY_HuEx_1_0_st_v2:3985485"/db_xref "OTTT:OTTHUMT00000057693"/note "processed_pseudogene"/note "transcript_id=ENST00000402296"gene 541565..543636/gene ENSG00000102409/locus_tag "BEX4"/note "Protein BEX4 (Brain-expressed X-linked protein 4) (BEX1-like 1) (Nerve growth factor receptor-associated protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NWD9]"mRNA join(541565..541679,542590..543540)/gene "ENSG00000102409"/note "transcript_id=ENST00000372691"CDS 542595..542957/gene "ENSG00000102409"/protein_id "ENSP00000361776"/note "transcript_id=ENST00000372691"/db_xref "HGNC:BEX4"/db_xref "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref "RefSeq_peptide:NP_001073894.1"/db_xref "EntrezGene:BEX4"/db_xref "AgilentProbe:A_24_P40551"/db_xref "AgilentProbe:A_32_P156941"/db_xref "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX4-002"/db_xref "IPI:IPI00739732.1"/db_xref "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref "AFFY_HG_U133A:215440_s_at"/db_xref "AFFY_HG_U133A_2:215440_s_at"/db_xref "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016383"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref "Illumina_V2:ILMN_37437"/db_xref "OTTP:59442"/db_xref "OTTP:OTTHUMP00000023729"/db_xref "OTTT:OTTHUMT00000057695"/translation "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY MRFQTPEPDNHYDFCLIP"mRNA join(541565..541679,542123..542205,542590..543636)/gene "ENSG00000102409"/note "transcript_id=ENST00000372695"CDS 542595..542957/gene "ENSG00000102409"/protein_id "ENSP00000361780"/note "transcript_id=ENST00000372695"/db_xref "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref "RefSeq_peptide:NP_001073894.1"/db_xref "RefSeq_dna:NM_001080425"/db_xref "RefSeq_dna_predicted:XM_043653"/db_xref "EntrezGene:BEX4"/db_xref "AgilentProbe:A_23_P114391"/db_xref "AgilentProbe:A_24_P40551"/db_xref "AgilentProbe:A_32_P156941"/db_xref "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX4-001"/db_xref "IPI:IPI00739732.1"/db_xref "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref "AFFY_HG_U133A:215440_s_at"/db_xref "AFFY_HG_U133A_2:215440_s_at"/db_xref "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016383"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref "Illumina_V2:ILMN_37437"/db_xref "OTTT:OTTHUMT00000057694"/db_xref "shares_CDS_with_OTTT:BEX4-001"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057694"/translation "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY MRFQTPEPDNHYDFCLIP"gene complement(579439..581634)/gene ENSG00000180964/locus_tag "TCEAL8"/note "Transcription elongation factor A protein-like 8 (TCEA-like protein 8) (Transcription elongation factor S- II protein-like 8). [Source:Uniprot/SWISSPROT;Acc:Q8IYN2]"mRNA join(complement(581519..581634), complement(579439..580458))/gene "ENSG00000180964"/note "transcript_id=ENST00000360000"CDS complement(580067..580420)/gene "ENSG00000180964"/protein_id "ENSP00000353093"/note "transcript_id=ENST00000360000"/db_xref "HGNC:TCEAL8"/db_xref "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref "RefSeq_peptide:NP_001006685.1"/db_xref "RefSeq_peptide:NP_699164.1"/db_xref "EntrezGene:TCEAL8"/db_xref "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL8-002"/db_xref "IPI:IPI00217810.1"/db_xref "UniGene:Hs.612731"/db_xref "protein_id:AAH35573.1"/db_xref "protein_id:CAI41979.1"/db_xref "AFFY_HG_U133B:224819_at"/db_xref "AFFY_HG_U133_Plus_2:224819_at"/db_xref "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref "AFFY_HuEx_1_0_st_v2:3985503"/db_xref "AFFY_HuEx_1_0_st_v2:3985505"/db_xref "AFFY_U133_X3P:224819_3p_at"/db_xref "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057699"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057699"/db_xref "shares_CDS_with_OTTT:TCEAL8-002"/translation "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK QRHSRSRPYPVCFRP"mRNA join(complement(581519..581634), complement(581046..581118),complement(579439..580458))/gene "ENSG00000180964"/note "transcript_id=ENST00000372685"CDS complement(580067..580420)/gene "ENSG00000180964"/protein_id "ENSP00000361770"/note "transcript_id=ENST00000372685"/db_xref "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref "RefSeq_peptide:NP_001006685.1"/db_xref "RefSeq_peptide:NP_699164.1"/db_xref "RefSeq_dna:NM_001006684"/db_xref "RefSeq_dna:NM_153333"/db_xref "EntrezGene:TCEAL8"/db_xref "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL8-001"/db_xref "IPI:IPI00217810.1"/db_xref "protein_id:AAH35573.1"/db_xref "protein_id:CAI41979.1"/db_xref "AFFY_HG_U133B:224819_at"/db_xref "AFFY_HG_U133_Plus_2:224819_at"/db_xref "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref "AFFY_HuEx_1_0_st_v2:3985503"/db_xref "AFFY_HuEx_1_0_st_v2:3985504"/db_xref "AFFY_HuEx_1_0_st_v2:3985505"/db_xref "AFFY_U133_X3P:224819_3p_at"/db_xref "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057698"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057698"/db_xref "shares_CDS_with_OTTT:TCEAL8-001"/translation "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK QRHSRSRPYPVCFRP"mRNA join(complement(580331..580420), complement(580100..580231))/gene "ENSG00000180964"/note "transcript_id=ENST00000372681"CDS join(complement(580331..580420), complement(580100..580231))/gene "ENSG00000180964"/protein_id "ENSP00000361766"/note "transcript_id=ENST00000372681"/db_xref "Uniprot/SPTREMBL:Q5H9L1_HUMAN"/db_xref "EMBL:Z68694"/db_xref "GO:GO:0003746"/db_xref "HGNC_automatic_transcript:TCEAL8-201"/db_xref "IPI:IPI00640443.1"/db_xref "protein_id:CAI41978.1"/db_xref "AFFY_HuEx_1_0_st_v2:3985503"/db_xref "AFFY_HuEx_1_0_st_v2:3985504"/translation "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEDTPVRHLDPEEMIR GVDELERLREEIRRVRNKFVMMHWKQRHSR"gene complement(585013..586022)/gene ENSG00000219002/locus_tag "LL0XNC01-177E8.2"misc_RNA join(complement(585929..586022), complement(585013..585759))/gene "ENSG00000219002"/db_xref "Clone_based_vega_transcript:LL0XNC01-177E8.2- 001"/db_xref "OTTT:OTTHUMT00000057697"/note "processed_pseudogene"/note "transcript_id=ENST00000406148"gene complement(600132..603313)/gene ENSG00000204065/locus_tag "TCEAL5"/note "Transcription elongation factor A protein-like 5 (TCEA-like protein 5) (Transcription elongation factor S- II protein-like 5). [Source:Uniprot/SWISSPROT;Acc:Q5H9L2]"mRNA join(complement(603114..603313), complement(601716..601783),complement(600132..601031))/gene "ENSG00000204065"/note "transcript_id=ENST00000372680"CDS complement(600384..601004)/gene "ENSG00000204065"/protein_id "ENSP00000361765"/note "transcript_id=ENST00000372680"/db_xref "HGNC:TCEAL5"/db_xref "CCDS:CCDS35356.1"/db_xref "Uniprot/SWISSPROT:TCAL5_HUMAN"/db_xref "RefSeq_peptide:NP_001012997.1"/db_xref "RefSeq_dna:NM_001012979"/db_xref "Uniprot/SPTREMBL:A2RUJ4_HUMAN"/db_xref "EntrezGene:TCEAL5"/db_xref "AgilentProbe:A_23_P62399"/db_xref "AgilentProbe:A_32_P18470"/db_xref "EMBL:BC132922"/db_xref "EMBL:BC132924"/db_xref "EMBL:CH471190"/db_xref "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL5-001"/db_xref "IPI:IPI00257932.1"/db_xref "UniGene:Hs.403462"/db_xref "protein_id:AAI32923.1"/db_xref "protein_id:AAI32925.1"/db_xref "protein_id:CAI41976.1"/db_xref "protein_id:EAW54717.1"/db_xref "AFFY_HG_U95E:87383_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "Codelink:GE876309"/db_xref "Illumina_V1:GI_29744085-S"/db_xref "Illumina_V2:ILMN_10460"/db_xref "OTTP:59448"/db_xref "OTTP:OTTHUMP00000023730"/db_xref "OTTT:OTTHUMT00000057696"/db_xref "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057696"/db_xref "shares_CDS_and_UTR_with_OTTT:TCEAL5-001"/translation "MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDM EGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRA AEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELR KKQKMGGFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV"gene complement(635795..637458)/gene ENSG00000133134/locus_tag "BEX2"/note "Protein BEX2 (Brain-expressed X-linked protein 2) (hBex2). [Source:Uniprot/SWISSPROT;Acc:Q9BXY8]"mRNA join(complement(637301..637458), complement(636799..636874),complement(635795..636422))/gene "ENSG00000133134"/note "transcript_id=ENST00000372677"CDS complement(636031..636417)/gene "ENSG00000133134"/protein_id "ENSP00000361762"/note "transcript_id=ENST00000372677"/db_xref "HGNC:BEX2"/db_xref "CCDS:CCDS14505.1"/db_xref "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref "RefSeq_peptide:NP_116010.1"/db_xref "RefSeq_dna:NM_032621"/db_xref "EntrezGene:BEX2"/db_xref "AgilentProbe:A_23_P22735"/db_xref "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-002"/db_xref "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref "AFFY_HG_U133_Plus_2:224367_at"/db_xref "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref "AFFY_HuEx_1_0_st_v2:3985510"/db_xref "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref "Illumina_V1:hmm18828-S"/db_xref "Illumina_V1:hmm36653-S"/db_xref "OTTT:OTTHUMT00000057702"/db_xref "shares_CDS_with_OTTT:BEX2-002"/db_xref "shares_CDS_with_OTTT:BEX2-003"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057702"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057703"/translation "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK QLSHSLRAVSTDPPHHDHHDEFCLMP"mRNA join(complement(637337..637448), complement(636799..636874),complement(635943..636422))/gene "ENSG00000133134"/note "transcript_id=ENST00000372674"CDS complement(636031..636417)/gene "ENSG00000133134"/protein_id "ENSP00000361759"/note "transcript_id=ENST00000372674"/db_xref "CCDS:CCDS14505.1"/db_xref "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref "RefSeq_peptide:NP_116010.1"/db_xref "EntrezGene:BEX2"/db_xref "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-003"/db_xref "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref "AFFY_HG_U133_Plus_2:224367_at"/db_xref "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref "AFFY_HuEx_1_0_st_v2:3985510"/db_xref "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref "Illumina_V1:hmm18828-S"/db_xref "OTTP:59451"/db_xref "OTTP:OTTHUMP00000023736"/db_xref "OTTT:OTTHUMT00000057703"/db_xref "shares_CDS_with_ENST:ENST00000372677"/translation "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK QLSHSLRAVSTDPPHHDHHDEFCLMP"gene 656670..658766/gene ENSG00000182916/locus_tag "TCEAL7"/note "Transcription elongation factor A protein-like 7 (TCEA-like protein 7) (Transcription elongation factor S- II protein-like 7). [Source:Uniprot/SWISSPROT;Acc:Q9BRU2]"mRNA join(656670..656745,657418..657481,657818..658529)/gene "ENSG00000182916"/note "transcript_id=ENST00000372666"CDS 657845..658147/gene "ENSG00000182916"/protein_id "ENSP00000361751"/note "transcript_id=ENST00000372666"/db_xref "HGNC:TCEAL7"/db_xref "CCDS:CCDS14506.1"/db_xref "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref "RefSeq_peptide:NP_689491.1"/db_xref "RefSeq_dna:NM_152278"/db_xref "EntrezGene:TCEAL7"/db_xref "AgilentCGH:A_14_P111438"/db_xref "AgilentProbe:A_23_P125788"/db_xref "AgilentProbe:A_24_P49106"/db_xref "EMBL:BC005988"/db_xref "EMBL:BC016786"/db_xref "EMBL:Z92846"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL7-002"/db_xref "IPI:IPI00059712.1"/db_xref "protein_id:AAH05988.2"/db_xref "protein_id:AAH16786.1"/db_xref "protein_id:CAI41965.1"/db_xref "AFFY_HG_U133B:227705_at"/db_xref "AFFY_HG_U133_Plus_2:227705_at"/db_xref "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016444"/db_xref "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref "Illumina_V2:ILMN_13373"/db_xref "OTTP:59455"/db_xref "OTTP:OTTHUMP00000023738"/db_xref "OTTT:OTTHUMT00000057705"/db_xref "shares_CDS_with_ENST:ENST00000332431"/translation "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"mRNA join(656678..656745,657364..657481,657818..658766)/gene "ENSG00000182916"/note "transcript_id=ENST00000332431"CDS 657845..658147/gene "ENSG00000182916"/protein_id "ENSP00000329794"/note "transcript_id=ENST00000332431"/db_xref "CCDS:CCDS14506.1"/db_xref "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref "RefSeq_peptide:NP_689491.1"/db_xref "EntrezGene:TCEAL7"/db_xref "AgilentCGH:A_14_P111438"/db_xref "AgilentProbe:A_23_P125788"/db_xref "AgilentProbe:A_24_P49106"/db_xref "EMBL:BC005988"/db_xref "EMBL:BC016786"/db_xref "EMBL:Z92846"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL7-001"/db_xref "IPI:IPI00059712.1"/db_xref "UniGene:Hs.602651"/db_xref "protein_id:AAH05988.2"/db_xref "protein_id:AAH16786.1"/db_xref "protein_id:CAI41965.1"/db_xref "AFFY_HG_U133B:227705_at"/db_xref "AFFY_HG_U133_Plus_2:227705_at"/db_xref "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016446"/db_xref "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref "Illumina_V2:ILMN_13373"/db_xref "OTTT:OTTHUMT00000057704"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057704"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057705"/db_xref "shares_CDS_with_OTTT:TCEAL7-001"/db_xref "shares_CDS_with_OTTT:TCEAL7-002"/translation "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"gene complement(673903..674170)/gene ENSG00000215026/locus_tag "LL0XNC01-105G4.3"misc_RNA complement(673903..674170)/gene "ENSG00000215026"/db_xref "Clone_based_vega_transcript:LL0XNC01-105G4.3- 001"/db_xref "OTTT:OTTHUMT00000057708"/note "processed_pseudogene"/note "transcript_id=ENST00000399456"gene 682893..684892/gene ENSG00000185222/locus_tag "WBP5"/note "WW domain-binding protein 5 (WBP-5). [Source:Uniprot/SWISSPROT;Acc:Q9UHQ7]"mRNA join(682893..683047,684056..684892)/gene "ENSG00000185222"/note "transcript_id=ENST00000372656"CDS 684126..684440/gene "ENSG00000185222"/protein_id "ENSP00000361740"/note "transcript_id=ENST00000372656"/db_xref "HGNC:WBP5"/db_xref "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref "RefSeq_peptide:NP_001006613.1"/db_xref "RefSeq_peptide:NP_001006614.1"/db_xref "RefSeq_peptide:NP_001006615.1"/db_xref "RefSeq_peptide:NP_057387.1"/db_xref "EntrezGene:WBP5"/db_xref "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref "HGNC_curated_transcript:WBP5-002"/db_xref "IPI:IPI00008434.1"/db_xref "protein_id:AAF17229.1"/db_xref "protein_id:AAH23544.1"/db_xref "protein_id:CAD12327.1"/db_xref "AFFY_HG_Focus:217975_at"/db_xref "AFFY_HG_U133A:217975_at"/db_xref "AFFY_HG_U133A_2:217975_at"/db_xref "AFFY_HG_U133_Plus_2:217975_at"/db_xref "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016456"/db_xref "AFFY_HuEx_1_0_st_v2:4016458"/db_xref "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref "OTTT:OTTHUMT00000057707"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057707"/db_xref "shares_CDS_with_OTTT:WBP5-002"/translation "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY LM"mRNA join(682893..683047,683524..683602,684056..684892)/gene "ENSG00000185222"/note "transcript_id=ENST00000372661"CDS 684126..684440/gene "ENSG00000185222"/protein_id "ENSP00000361745"/note "transcript_id=ENST00000372661"/db_xref "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref "RefSeq_peptide:NP_001006613.1"/db_xref "RefSeq_peptide:NP_001006614.1"/db_xref "RefSeq_peptide:NP_001006615.1"/db_xref "RefSeq_peptide:NP_057387.1"/db_xref "RefSeq_dna:NM_001006612"/db_xref "RefSeq_dna:NM_001006613"/db_xref "RefSeq_dna:NM_001006614"/db_xref "RefSeq_dna:NM_016303"/db_xref "EntrezGene:WBP5"/db_xref "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref "GO:GO:0050699"/db_xref "HGNC_curated_transcript:WBP5-001"/db_xref "IPI:IPI00008434.1"/db_xref "protein_id:AAF17229.1"/db_xref "protein_id:AAH23544.1"/db_xref "protein_id:CAD12327.1"/db_xref "AFFY_HG_Focus:217975_at"/db_xref "AFFY_HG_U133A:217975_at"/db_xref "AFFY_HG_U133A_2:217975_at"/db_xref "AFFY_HG_U133_Plus_2:217975_at"/db_xref "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016456"/db_xref "AFFY_HuEx_1_0_st_v2:4016458"/db_xref "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref "OTTT:OTTHUMT00000057706"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057706"/db_xref "shares_CDS_with_OTTT:WBP5-001"/translation "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY LM"gene 702767..704518/gene ENSG00000166681/locus_tag "NGFRAP1"/note "Protein BEX3 (Brain-expressed X-linked protein 3) (p75NTR-associated cell death executor) (Nerve growth factor receptor-associated protein 1) (Ovarian granulosa cell 13.0 kDa protein HGR74). [Source:Uniprot/SWISSPROT;Acc:Q00994]"mRNA join(702767..703054,703469..703547,703904..704509)/gene "ENSG00000166681"/note "transcript_id=ENST00000299872"CDS 703963..704268/gene "ENSG00000166681"/protein_id "ENSP00000299872"/note "transcript_id=ENST00000299872"/db_xref "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref "HGNC_automatic_transcript:NGFRAP1-201"/db_xref "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref "AFFY_HG_U133A:217963_s_at"/db_xref "AFFY_HG_U133A_2:217963_s_at"/db_xref "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_HuEx_1_0_st_v2:4016461"/db_xref "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref "shares_CDS_with_OTTT:NGFRAP1-002"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057710"/translation "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA join(702767..703054,703469..703547,703904..704509)/gene "ENSG00000166681"/note "transcript_id=ENST00000372645"CDS 703933..704268/gene "ENSG00000166681"/protein_id "ENSP00000361728"/note "transcript_id=ENST00000372645"/db_xref "HGNC:NGFRAP1"/db_xref "CCDS:CCDS14508.1"/db_xref "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref "RefSeq_peptide:NP_055195.1"/db_xref "RefSeq_peptide:NP_996798.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref "RefSeq_dna:NM_014380"/db_xref "RefSeq_dna:NM_206915"/db_xref "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref "GO:GO:0005123"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "GO:GO:0005829"/db_xref "GO:GO:0006915"/db_xref "GO:GO:0006917"/db_xref "GO:GO:0007275"/db_xref "GO:GO:0008625"/db_xref "GO:GO:0046872"/db_xref "HGNC_curated_transcript:NGFRAP1-001"/db_xref "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref "AFFY_HG_U133A:217963_s_at"/db_xref "AFFY_HG_U133A_2:217963_s_at"/db_xref "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_HuEx_1_0_st_v2:4016461"/db_xref "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref "OTTT:OTTHUMT00000057709"/db_xref "shares_CDS_with_OTTT:NGFRAP1-001"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057709"/translation "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD HHDEFCLMP"mRNA join(702781..703054,703469..703547,703951..704518)/gene "ENSG00000166681"/note "transcript_id=ENST00000361298"CDS 703963..704268/gene "ENSG00000166681"/protein_id "ENSP00000354843"/note "transcript_id=ENST00000361298"/db_xref "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref "HGNC_curated_transcript:NGFRAP1-002"/db_xref "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref "AFFY_HG_U133A:217963_s_at"/db_xref "AFFY_HG_U133A_2:217963_s_at"/db_xref "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_HuEx_1_0_st_v2:4016461"/db_xref "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref "OTTP:59460"/db_xref "OTTP:OTTHUMP00000023742"/db_xref "OTTT:OTTHUMT00000057710"/db_xref "shares_CDS_with_ENST:ENST00000299872"/translation "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA join(702848..703054,703904..704501)/gene "ENSG00000166681"/note "transcript_id=ENST00000372635"CDS 703933..704268/gene "ENSG00000166681"/protein_id "ENSP00000361718"/note "transcript_id=ENST00000372635"/db_xref "CCDS:CCDS14508.1"/db_xref "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref "RefSeq_peptide:NP_055195.1"/db_xref "RefSeq_peptide:NP_996798.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "GO:GO:0006915"/db_xref "GO:GO:0007275"/db_xref "GO:GO:0046872"/db_xref "HGNC_curated_transcript:NGFRAP1-003"/db_xref "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref "AFFY_HG_U133A:217963_s_at"/db_xref "AFFY_HG_U133A_2:217963_s_at"/db_xref "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_HuEx_1_0_st_v2:4016461"/db_xref "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref "OTTP:59461"/db_xref "OTTP:OTTHUMP00000023743"/db_xref "OTTT:OTTHUMT00000057711"/translation "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD HHDEFCLMP"mRNA join(703357..703547,703951..704512)/gene "ENSG00000166681"/note "transcript_id=ENST00000372634"CDS 703963..704268/gene "ENSG00000166681"/protein_id "ENSP00000361717"/note "transcript_id=ENST00000372634"/db_xref "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref "RefSeq_dna:NM_206917"/db_xref "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref "HGNC_curated_transcript:NGFRAP1-004"/db_xref "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref "AFFY_HG_U133A:217963_s_at"/db_xref "AFFY_HG_U133A_2:217963_s_at"/db_xref "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_HuEx_1_0_st_v2:4016461"/db_xref "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref "OTTP:59462"/db_xref "OTTP:OTTHUMP00000023744"/db_xref "OTTT:OTTHUMT00000057712"/translation "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"gene complement(826191..845930)/gene ENSG00000172476/locus_tag "RAB40A"/note "Ras-related protein Rab-40A (SOCS box-containing protein RAR2A) (Protein Rar-2). [Source:Uniprot/SWISSPROT;Acc:Q8WXH6]"mRNA complement(826191..829316)/gene "ENSG00000172476"/note "transcript_id=ENST00000372633"CDS complement(826364..827197)/gene "ENSG00000172476"/protein_id "ENSP00000361716"/note "transcript_id=ENST00000372633"/db_xref "HGNC:RAB40A"/db_xref "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref "RefSeq_peptide:NP_543155.2"/db_xref "RefSeq_dna:NM_080879"/db_xref "EntrezGene:RAB40A"/db_xref "AgilentCGH:A_14_P129520"/db_xref "AgilentProbe:A_23_P259912"/db_xref "AgilentProbe:A_32_P464296"/db_xref "AgilentProbe:A_32_P88719"/db_xref "EMBL:AB232637"/db_xref "EMBL:AF132748"/db_xref "EMBL:AF422143"/db_xref "EMBL:BC074854"/db_xref "EMBL:BC074855"/db_xref "EMBL:BC113501"/db_xref "EMBL:BC117232"/db_xref "EMBL:Z69733"/db_xref "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40A-002"/db_xref "IPI:IPI00514509.4"/db_xref "UniGene:Hs.27453"/db_xref "protein_id:AAH74854.1"/db_xref "protein_id:AAH74855.1"/db_xref "protein_id:AAI13502.1"/db_xref "protein_id:AAI17233.1"/db_xref "protein_id:AAL60514.1"/db_xref "protein_id:AAL75949.1"/db_xref "protein_id:BAF02899.1"/db_xref "protein_id:CAI41993.1"/db_xref "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A:217589_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref "AFFY_HG_U133A_2:217589_at"/db_xref "AFFY_HG_U133_Plus_2:215782_at"/db_xref "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985603"/db_xref "AFFY_HuEx_1_0_st_v2:3985604"/db_xref "AFFY_HuEx_1_0_st_v2:3985605"/db_xref "AFFY_HuEx_1_0_st_v2:3985606"/db_xref "AFFY_HuEx_1_0_st_v2:3985608"/db_xref "AFFY_HuEx_1_0_st_v2:4016299"/db_xref "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V1:Hs.496523-S"/db_xref "Illumina_V2:ILMN_123867"/db_xref "Illumina_V2:ILMN_20197"/db_xref "OTTP:59465"/db_xref "OTTP:OTTHUMP00000023746"/db_xref "OTTT:OTTHUMT00000057714"/translation "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI S"mRNA join(complement(845811..845930), complement(843815..843966),complement(826195..827267))/gene "ENSG00000172476"/note "transcript_id=ENST00000304236"CDS complement(826364..827197)/gene "ENSG00000172476"/protein_id "ENSP00000305648"/note "transcript_id=ENST00000304236"/db_xref "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref "RefSeq_peptide:NP_543155.2"/db_xref "EntrezGene:RAB40A"/db_xref "AgilentCGH:A_14_P129520"/db_xref "AgilentProbe:A_23_P259912"/db_xref "AgilentProbe:A_32_P88719"/db_xref "EMBL:AB232637"/db_xref "EMBL:AF132748"/db_xref "EMBL:AF422143"/db_xref "EMBL:BC074854"/db_xref "EMBL:BC074855"/db_xref "EMBL:BC113501"/db_xref "EMBL:BC117232"/db_xref "EMBL:Z69733"/db_xref "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40A-001"/db_xref "IPI:IPI00514509.4"/db_xref "protein_id:AAH74854.1"/db_xref "protein_id:AAH74855.1"/db_xref "protein_id:AAI13502.1"/db_xref "protein_id:AAI17233.1"/db_xref "protein_id:AAL60514.1"/db_xref "protein_id:AAL75949.1"/db_xref "protein_id:BAF02899.1"/db_xref "protein_id:CAI41993.1"/db_xref "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A:217589_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref "AFFY_HG_U133A_2:217589_at"/db_xref "AFFY_HG_U133_Plus_2:215782_at"/db_xref "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985603"/db_xref "AFFY_HuEx_1_0_st_v2:3985604"/db_xref "AFFY_HuEx_1_0_st_v2:3985605"/db_xref "AFFY_HuEx_1_0_st_v2:4016299"/db_xref "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V2:ILMN_20197"/db_xref "OTTP:59464"/db_xref "OTTP:OTTHUMP00000023745"/db_xref "OTTT:OTTHUMT00000057713"/db_xref "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057713"/db_xref "shares_CDS_and_UTR_with_OTTT:RAB40A-001"/translation "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI S"gene 902911..914166/gene ENSG00000133142/locus_tag "TCEAL4"/note "Transcription elongation factor A protein-like 4 (TCEA-like protein 4) (Transcription elongation factor S- II protein-like 4). [Source:Uniprot/SWISSPROT;Acc:Q96EI5]"mRNA join(902911..902973,903535..903654,912066..912201, 912660..912742,913090..913956)/gene "ENSG00000133142"/note "transcript_id=ENST00000372629"CDS join(902911..902973,903535..903654,912066..912201, 912660..912742,913090..913764)/gene "ENSG00000133142"/protein_id "ENSP00000361712"/note "transcript_id=ENST00000372629"/db_xref "HGNC:TCEAL4"/db_xref "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref "RefSeq_peptide:NP_001006936.1"/db_xref "RefSeq_peptide:NP_001006937.1"/db_xref "RefSeq_peptide:NP_001006938.1"/db_xref "RefSeq_peptide:NP_079139.4"/db_xref "Uniprot/Varsplic:Q96EI5-2"/db_xref "EntrezGene:TCEAL4"/db_xref "AgilentCGH:A_14_P118508"/db_xref "AgilentCGH:A_14_P128392"/db_xref "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL4-001"/db_xref "IPI:IPI00647163.1"/db_xref "IPI:IPI00657999.3"/db_xref "protein_id:AAG44794.1"/db_xref "protein_id:AAH12296.1"/db_xref "protein_id:AAL40909.1"/db_xref "protein_id:BAB15023.1"/db_xref "protein_id:CAI42031.1"/db_xref "AFFY_HG_U133A:202371_at"/db_xref "AFFY_HG_U133A_2:202371_at"/db_xref "AFFY_HG_U133_Plus_2:202371_at"/db_xref "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016542"/db_xref "AFFY_HuEx_1_0_st_v2:4016545"/db_xref "AFFY_HuEx_1_0_st_v2:4016547"/db_xref "AFFY_HuEx_1_0_st_v2:4016548"/db_xref "AFFY_HuEx_1_0_st_v2:4016549"/db_xref "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref "Illumina_V1:GI_21361595-S"/db_xref "Illumina_V2:ILMN_15986"/db_xref "Illumina_V2:ILMN_1896"/db_xref "OTTT:OTTHUMT00000252336"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000252336"/db_xref "shares_CDS_with_OTTT:TCEAL4-001"/translation "MPAGGQAPQLTPVIPAFWEARGLPNSKGRDKVHICQCEEWKGHI SYVERDITTSEIKSLPQVSVRAFHAASGTLEWRKGNGYGRGKGWGWGRVESREAGPSV DRDGGLRVCCSQRSAKPEKEEQPVQNPRRSVKDRKRRGNLDMEKLYSENEGMASNQGK MENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGK SEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKG LAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFY PRGPREFRGGCRAPRRDIEDIPYV"mRNA join(911932..912065,912660..912732,913090..914166)/gene "ENSG00000133142"/note "transcript_id=ENST00000395036"CDS 913117..913764/gene "ENSG00000133142"/protein_id "ENSP00000378477"/note "transcript_id=ENST00000395036"/db_xref "CCDS:CCDS14510.2"/db_xref "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref "RefSeq_peptide:NP_001006936.1"/db_xref "RefSeq_peptide:NP_001006937.1"/db_xref "RefSeq_peptide:NP_001006938.1"/db_xref "RefSeq_peptide:NP_079139.4"/db_xref "RefSeq_dna:NM_001006935"/db_xref "RefSeq_dna:NM_001006937"/db_xref "RefSeq_dna:NM_024863"/db_xref "EntrezGene:TCEAL4"/db_xref "AgilentCGH:A_14_P128392"/db_xref "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL4-201"/db_xref "IPI:IPI00657999.3"/db_xref "protein_id:AAG44794.1"/db_xref "protein_id:AAH12296.1"/db_xref "protein_id:AAL40909.1"/db_xref "protein_id:BAB15023.1"/db_xref "protein_id:CAI42031.1"/db_xref "AFFY_HG_U133A:202371_at"/db_xref "AFFY_HG_U133A_2:202371_at"/db_xref "AFFY_HG_U133_Plus_2:202371_at"/db_xref "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016538"/db_xref "AFFY_HuEx_1_0_st_v2:4016540"/db_xref "AFFY_HuEx_1_0_st_v2:4016541"/db_xref "AFFY_HuEx_1_0_st_v2:4016545"/db_xref "AFFY_HuEx_1_0_st_v2:4016547"/db_xref "AFFY_HuEx_1_0_st_v2:4016548"/db_xref "AFFY_HuEx_1_0_st_v2:4016549"/db_xref "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref "Illumina_V1:GI_21361595-S"/db_xref "Illumina_V2:ILMN_1896"/translation "MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENE GKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPES EGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFD NMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV"gene 933892..936368/gene ENSG00000196507/locus_tag "TCEAL3"/note "Transcription elongation factor A protein-like 3 (TCEA-like protein 3) (Transcription elongation factor S- II protein-like 3). [Source:Uniprot/SWISSPROT;Acc:Q969E4]"mRNA join(933892..934157,935045..935114,935484..936368)/gene "ENSG00000196507"/note "transcript_id=ENST00000372628"CDS 935506..936108/gene "ENSG00000196507"/protein_id "ENSP00000361711"/note "transcript_id=ENST00000372628"/db_xref "HGNC:TCEAL3"/db_xref "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref "RefSeq_peptide:NP_001006934.1"/db_xref "RefSeq_peptide:NP_116315.1"/db_xref "RefSeq_dna:NM_001006933"/db_xref "RefSeq_dna:NM_032926"/db_xref "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-002"/db_xref "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref "AFFY_HG_U133B:227279_at"/db_xref "AFFY_HG_U133_Plus_2:227279_at"/db_xref "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref "OTTP:59471"/db_xref "OTTP:OTTHUMP00000023758"/db_xref "OTTT:OTTHUMT00000057737"/db_xref "shares_CDS_with_ENST:ENST00000243286"/db_xref "shares_CDS_with_ENST:ENST00000372627"/translation "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA join(934347..934511,935045..935114,935479..936367)/gene "ENSG00000196507"/note "transcript_id=ENST00000243286"CDS 935506..936108/gene "ENSG00000196507"/protein_id "ENSP00000243286"/note "transcript_id=ENST00000243286"/db_xref "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref "RefSeq_peptide:NP_001006934.1"/db_xref "RefSeq_peptide:NP_116315.1"/db_xref "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL3-201"/db_xref "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref "AFFY_HG_U133B:227279_at"/db_xref "AFFY_HG_U133_Plus_2:227279_at"/db_xref "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref "shares_CDS_with_OTTT:TCEAL3-001"/db_xref "shares_CDS_with_OTTT:TCEAL3-002"/translation "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA join(934406..934499,935045..935114,935479..936367)/gene "ENSG00000196507"/note "transcript_id=ENST00000372627"CDS 935506..936108/gene "ENSG00000196507"/protein_id "ENSP00000361710"/note "transcript_id=ENST00000372627"/db_xref "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref "RefSeq_peptide:NP_001006934.1"/db_xref "RefSeq_peptide:NP_116315.1"/db_xref "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-001"/db_xref "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref "AFFY_HG_U133B:227279_at"/db_xref "AFFY_HG_U133_Plus_2:227279_at"/db_xref "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref "OTTT:OTTHUMT00000057736"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref "shares_CDS_with_OTTT:TCEAL3-001"/db_xref "shares_CDS_with_OTTT:TCEAL3-002"/translation "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"gene 955161..957387/gene ENSG00000172465/locus_tag "TCEAL1"/note "transcription elongation factor A (SII)-like 1 [Source:RefSeq_peptide;Acc:NP_001006641]"mRNA join(955161..955234,955935..956002,956326..957387)/gene "ENSG00000172465"/note "transcript_id=ENST00000372626"CDS 956358..956837/gene "ENSG00000172465"/protein_id "ENSP00000361709"/note "transcript_id=ENST00000372626"/db_xref "HGNC:TCEAL1"/db_xref "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref "RefSeq_peptide:NP_001006641.1"/db_xref "RefSeq_peptide:NP_004771.2"/db_xref "RefSeq_dna:NM_001006639"/db_xref "RefSeq_dna:NM_001006640"/db_xref "RefSeq_dna:NM_004780"/db_xref "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref "AgilentProbe:A_32_P498070"/db_xref "GO:GO:0005515"/db_xref "HGNC_curated_transcript:TCEAL1-001"/db_xref "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref "AFFY_HG_U133_Plus_2:204045_at"/db_xref "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016567"/db_xref "AFFY_HuEx_1_0_st_v2:4016569"/db_xref "AFFY_HuGeneFL:M99701_at"/db_xref "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref "Illumina_V2:ILMN_23088"/db_xref "Illumina_V2:ILMN_28868"/db_xref "OTTT:OTTHUMT00000058903"/db_xref "OTTT:OTTHUMT00000058904"/db_xref "OTTT:OTTHUMT00000058905"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref "shares_CDS_with_OTTT:TCEAL1-001"/db_xref "shares_CDS_with_OTTT:TCEAL1-002"/db_xref "shares_CDS_with_OTTT:TCEAL1-003"/translation "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA join(955405..955466,955935..956002,956326..957387)/gene "ENSG00000172465"/note "transcript_id=ENST00000372624"CDS 956358..956837/gene "ENSG00000172465"/protein_id "ENSP00000361707"/note "transcript_id=ENST00000372624"/db_xref "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref "RefSeq_peptide:NP_001006641.1"/db_xref "RefSeq_peptide:NP_004771.2"/db_xref "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref "AgilentProbe:A_32_P498070"/db_xref "HGNC_automatic_transcript:TCEAL1-201"/db_xref "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref "AFFY_HG_U133_Plus_2:204045_at"/db_xref "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016567"/db_xref "AFFY_HuEx_1_0_st_v2:4016569"/db_xref "AFFY_HuGeneFL:M99701_at"/db_xref "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref "Illumina_V2:ILMN_23088"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref "shares_CDS_with_OTTT:TCEAL1-001"/db_xref "shares_CDS_with_OTTT:TCEAL1-002"/db_xref "shares_CDS_with_OTTT:TCEAL1-003"/translation "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA join(955405..955466,955935..956014,956326..957387)/gene "ENSG00000172465"/note "transcript_id=ENST00000372625"CDS 956358..956837/gene "ENSG00000172465"/protein_id "ENSP00000361708"/note "transcript_id=ENST00000372625"/db_xref "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref "RefSeq_peptide:NP_001006641.1"/db_xref "RefSeq_peptide:NP_004771.2"/db_xref "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref "HGNC_automatic_transcript:TCEAL1-202"/db_xref "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref "UniGene:Hs.95243"/db_xref "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref "AFFY_HG_U133_Plus_2:204045_at"/db_xref "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016567"/db_xref "AFFY_HuEx_1_0_st_v2:4016569"/db_xref "AFFY_HuGeneFL:M99701_at"/db_xref "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref "Illumina_V2:ILMN_23088"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref "shares_CDS_with_OTTT:TCEAL1-001"/db_xref "shares_CDS_with_OTTT:TCEAL1-002"/db_xref "shares_CDS_with_OTTT:TCEAL1-003"/translation "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"gene complement(978174..978547)/gene ENSG00000180284/locus_tag "AL049610.9"misc_RNA join(complement(978422..978547), complement(978174..978419))/gene "ENSG00000180284"/db_xref "AgilentProbe:A_24_P349428"/db_xref "Clone_based_ensembl_transcri:AL049610.9-201"/db_xref "UniGene:Hs.712229"/note "pseudogene"/note "transcript_id=ENST00000312731"exon complement(5148..5254)/note "exon_id=ENSE00001396941"exon 32225..32681/note "exon_id=ENSE00001553787"exon 40223..40290/note "exon_id=ENSE00001318862"exon 39571..39658/note "exon_id=ENSE00001520517"exon 38853..38993/note "exon_id=ENSE00001520520"exon 40978..44173/note "exon_id=ENSE00001435544"exon 40630..40707/note "exon_id=ENSE00001296863"exon 38617..38993/note "exon_id=ENSE00001322878"exon 74258..74352/note "exon_id=ENSE00001458492"exon 47398..47532/note "exon_id=ENSE00001359890"exon 75140..79981/note "exon_id=ENSE00001458491"exon 72535..72615/note "exon_id=ENSE00001038238"exon 74026..74137/note "exon_id=ENSE00001458493"exon 47167..47262/note "exon_id=ENSE00001359898"exon 75140..78879/note "exon_id=ENSE00001458499"exon 99642..99712/note "exon_id=ENSE00001501273"exon 112108..113045/note "exon_id=ENSE00001559133"exon 113050..113109/note "exon_id=ENSE00001501266"exon 113185..113253/note "exon_id=ENSE00001501264"exon 113254..113638/note "exon_id=ENSE00001547725"exon 114269..114828/note "exon_id=ENSE00001549427"exon 123275..123510/note "exon_id=ENSE00001559090"exon 122692..122931/note "exon_id=ENSE00001563701"exon complement(123532..123603)/note "exon_id=ENSE00001501262"exon 123970..124556/note "exon_id=ENSE00001557597"exon 124837..125403/note "exon_id=ENSE00001550417"exon 125910..126001/note "exon_id=ENSE00001552084"exon 126004..126327/note "exon_id=ENSE00001549044"exon 126383..127532/note "exon_id=ENSE00001556456"exon 127754..127840/note "exon_id=ENSE00001562374"exon 127842..127907/note "exon_id=ENSE00001501259"exon 129354..129411/note "exon_id=ENSE00001501257"exon 129412..129481/note "exon_id=ENSE00001501248"exon 129482..129726/note "exon_id=ENSE00001554809"exon 131073..132579/note "exon_id=ENSE00001556308"exon complement(132605..133087)/note "exon_id=ENSE00001553181"exon 133182..134268/note "exon_id=ENSE00001547959"exon complement(134334..134386)/note "exon_id=ENSE00001501243"exon 135559..135629/note "exon_id=ENSE00001501240"exon 136559..136627/note "exon_id=ENSE00001501235"exon 263713..264741/note "exon_id=ENSE00000675363"exon 333902..334513/note "exon_id=ENSE00001556141"exon complement(389101..389720)/note "exon_id=ENSE00001458479"exon complement(390537..390681)/note "exon_id=ENSE00001105457"exon complement(390083..390172)/note "exon_id=ENSE00001105455"exon complement(395306..395427)/note "exon_id=ENSE00001564718"exon complement(419437..419535)/note "exon_id=ENSE00001458464"exon complement(409839..409943)/note "exon_id=ENSE00001322720"exon complement(404055..404187)/note "exon_id=ENSE00001302178"exon complement(406454..406509)/note "exon_id=ENSE00001293836"exon complement(402265..402441)/note "exon_id=ENSE00001458442"exon complement(406025..406083)/note "exon_id=ENSE00001314340"exon complement(405800..405915)/note "exon_id=ENSE00001325188"exon complement(406204..406311)/note "exon_id=ENSE00001313270"exon complement(410050..410133)/note "exon_id=ENSE00001303810"exon complement(411156..411324)/note "exon_id=ENSE00001327556"exon complement(419437..419540)/note "exon_id=ENSE00001520502"exon complement(407017..407053)/note "exon_id=ENSE00001322569"exon complement(409445..409514)/note "exon_id=ENSE00001308091"exon complement(405001..405073)/note "exon_id=ENSE00001293474"exon complement(406589..406657)/note "exon_id=ENSE00001301210"exon complement(402682..402742)/note "exon_id=ENSE00001327914"exon complement(409201..409289)/note "exon_id=ENSE00001292623"exon complement(409634..409714)/note "exon_id=ENSE00001291407"exon complement(410783..410936)/note "exon_id=ENSE00001311406"exon complement(408696..408805)/note "exon_id=ENSE00001309255"exon complement(405662..405704)/note "exon_id=ENSE00000979224"exon 413637..415717/note "exon_id=ENSE00001547073"exon complement(482560..482652)/note "exon_id=ENSE00001438555"exon complement(532453..533340)/note "exon_id=ENSE00001554209"exon 542590..543636/note "exon_id=ENSE00001458417"exon 542123..542205/note "exon_id=ENSE00000674092"exon 541565..541679/note "exon_id=ENSE00001458401"exon 542590..543540/note "exon_id=ENSE00001458400"exon complement(581519..581634)/note "exon_id=ENSE00001520463"exon complement(579439..580458)/note "exon_id=ENSE00001419203"exon complement(581046..581118)/note "exon_id=ENSE00001263715"exon complement(580331..580420)/note "exon_id=ENSE00001458382"exon complement(580100..580231)/note "exon_id=ENSE00001458381"exon complement(585013..585759)/note "exon_id=ENSE00001558162"exon complement(585929..586022)/note "exon_id=ENSE00001556744"exon complement(600132..601031)/note "exon_id=ENSE00001458378"exon complement(601716..601783)/note "exon_id=ENSE00001458379"exon complement(603114..603313)/note "exon_id=ENSE00001458380"exon complement(637301..637458)/note "exon_id=ENSE00001458422"exon complement(637337..637448)/note "exon_id=ENSE00001458367"exon complement(635795..636422)/note "exon_id=ENSE00001458371"exon complement(636799..636874)/note "exon_id=ENSE00001038555"exon complement(635943..636422)/note "exon_id=ENSE00001458366"exon 657818..658766/note "exon_id=ENSE00001325535"exon 657818..658529/note "exon_id=ENSE00001458343"exon 657364..657481/note "exon_id=ENSE00001305966"exon 657418..657481/note "exon_id=ENSE00001458345"exon 656670..656745/note "exon_id=ENSE00001458347"exon 656678..656745/note "exon_id=ENSE00001291638"exon complement(673903..674170)/note "exon_id=ENSE00001538428"exon 683524..683602/note "exon_id=ENSE00001318428"exon 682893..683047/note "exon_id=ENSE00001292620"exon 684056..684892/note "exon_id=ENSE00001458330"exon 703951..704512/note "exon_id=ENSE00001436496"exon 703357..703547/note "exon_id=ENSE00001458275"exon 702848..703054/note "exon_id=ENSE00001458277"exon 702781..703054/note "exon_id=ENSE00001375610"exon 703951..704518/note "exon_id=ENSE00001458290"exon 702767..703054/note "exon_id=ENSE00001458297"exon 703469..703547/note "exon_id=ENSE00001416044"exon 703904..704501/note "exon_id=ENSE00001458276"exon 703904..704509/note "exon_id=ENSE00001105579"exon complement(826191..829316)/note "exon_id=ENSE00001458270"exon complement(845811..845930)/note "exon_id=ENSE00001183586"exon complement(826195..827267)/note "exon_id=ENSE00001173849"exon complement(843815..843966)/note "exon_id=ENSE00001183584"exon 903535..903654/note "exon_id=ENSE00001183544"exon 911932..912065/note "exon_id=ENSE00001520388"exon 913090..913956/note "exon_id=ENSE00001458264"exon 912660..912732/note "exon_id=ENSE00001520387"exon 913090..914166/note "exon_id=ENSE00001520386"exon 912660..912742/note "exon_id=ENSE00001183536"exon 902911..902973/note "exon_id=ENSE00001458265"exon 912066..912201/note "exon_id=ENSE00001183538"exon 933892..934157/note "exon_id=ENSE00001458260"exon 935484..936368/note "exon_id=ENSE00001458259"exon 935479..936367/note "exon_id=ENSE00000840307"exon 934406..934499/note "exon_id=ENSE00001253340"exon 935045..935114/note "exon_id=ENSE00001253332"exon 934347..934511/note "exon_id=ENSE00001458257"exon 955405..955466/note "exon_id=ENSE00001458249"exon 955161..955234/note "exon_id=ENSE00001458252"exon 956326..957387/note "exon_id=ENSE00001458247"exon 955935..956002/note "exon_id=ENSE00001406936"exon 955935..956014/note "exon_id=ENSE00001458248"exon complement(978174..978419)/note "exon_id=ENSE00001250433"exon complement(978422..978547)/note "exon_id=ENSE00001250442"STS complement(22038..22346)/standard_name "SHGC-143390"/db_xref "UniSTS_NUM:185057"/db_xref "UniSTS:SHGC-143390"/note "map_weight=1"STS complement(43711..43868)/standard_name "RH78520"/db_xref "UniSTS_NUM:73812"/db_xref "UniSTS:RH78520"/db_xref "GM99-GB4:stSG41780"/note "map_weight=1"STS complement(49890..50031)/standard_name "A008N06"/db_xref "UniSTS_NUM:69104"/db_xref "UniSTS:A008N06"/note "map_weight=1"STS complement(78623..78780)/standard_name "DXS7007E"/db_xref "UniSTS_NUM:87907"/db_xref "UniSTS:DXS7007E"/db_xref "WUSTL-X:sWXD2417"/note "map_weight=1"STS complement(126684..126809)/standard_name "DXS7692"/db_xref "UniSTS_NUM:22137"/db_xref "UniSTS:L41751"/db_xref "UniSTS:DXS7692"/db_xref "WUSTL-X:sWXD1549"/note "map_weight=1"STS complement(126736..126835)/standard_name "L47999"/db_xref "UniSTS_NUM:32118"/db_xref "UniSTS:L47999"/db_xref "WUSTL-X:sWXD1440"/note "map_weight=1"STS complement(211742..211821)/standard_name "RH93084"/db_xref "UniSTS_NUM:88543"/db_xref "UniSTS:RH93084"/db_xref "GM99-GB4:stSG48268"/note "map_weight=1"STS complement(238085..238337)/standard_name "REN69440"/db_xref "UniSTS_NUM:394240"/db_xref "UniSTS:REN69440"/note "map_weight=3"STS complement(265241..265340)/standard_name "WI-16593"/db_xref "UniSTS_NUM:77493"/db_xref "UniSTS:T40480"/db_xref "UniSTS:WI-16593"/note "map_weight=1"STS complement(290665..290925)/standard_name "STS-N47340"/db_xref "UniSTS_NUM:24198"/db_xref "UniSTS:STS-N47340"/note "map_weight=1"STS complement(290723..290889)/standard_name "RH45776"/db_xref "UniSTS_NUM:47099"/db_xref "UniSTS:RH45776"/db_xref "GM99-GB4:stSG21435"/note "map_weight=1"STS complement(331700..331780)/standard_name "L77850"/db_xref "UniSTS_NUM:53608"/db_xref "UniSTS:L77850"/db_xref "WUSTL-X:sWXD2841"/note "map_weight=1"STS complement(389114..389226)/standard_name "RH18267"/db_xref "UniSTS_NUM:60599"/db_xref "UniSTS:RH18267"/db_xref "GM99-GB4:stSG9586"/note "map_weight=1"STS complement(402304..402528)/standard_name "RH79750"/db_xref "UniSTS_NUM:88517"/db_xref "UniSTS:RH79750"/db_xref "GM99-GB4:sts-AA010600"/note "map_weight=1"STS complement(402365..402517)/standard_name "RH102997"/db_xref "UniSTS_NUM:97331"/db_xref "UniSTS:RH102997"/db_xref "GM99-GB4:stSG54822"/note "map_weight=1"STS complement(429978..430117)/standard_name "DXS8350"/db_xref "UniSTS_NUM:80166"/db_xref "UniSTS:DXS8350"/db_xref "UniSTS:L41954"/db_xref "WUSTL-X:sWXD1283"/note "map_weight=1"STS complement(451418..451578)/standard_name "L77848"/db_xref "UniSTS_NUM:23678"/db_xref "UniSTS:L77848"/db_xref "WUSTL-X:sWXD2804"/note "map_weight=1"STS complement(513264..513554)/standard_name "GDB:315297"/db_xref "UniSTS_NUM:156514"/db_xref "UniSTS:GDB:315297"/note "map_weight=1"STS complement(543431..543624)/standard_name "RH80982"/db_xref "UniSTS_NUM:92748"/db_xref "UniSTS:RH80982"/db_xref "GM99-GB4:sts-T59331"/note "map_weight=1"STS complement(543471..543550)/standard_name "RH46879"/db_xref "UniSTS_NUM:24442"/db_xref "UniSTS:RH46879"/db_xref "GM99-GB4:stSG25760"/note "map_weight=1"STS complement(579449..579628)/standard_name "RH35755"/db_xref "UniSTS_NUM:71842"/db_xref "UniSTS:RH35755"/db_xref "GM99-GB4:stSG1764"/note "map_weight=1"STS complement(579510..579715)/standard_name "A002R41"/db_xref "UniSTS_NUM:5253"/db_xref "UniSTS:A002R41"/note "map_weight=1"STS complement(579804..579931)/standard_name "STS-R85811"/db_xref "UniSTS_NUM:50348"/db_xref "UniSTS:STS-R85811"/note "map_weight=1"STS complement(635821..635946)/standard_name "WI-15922"/db_xref "UniSTS_NUM:62839"/db_xref "UniSTS:WI-15922"/db_xref "UniSTS:G23964"/db_xref "UniSTS:R43117"/note "map_weight=1"STS complement(649415..649545)/standard_name "G22062"/db_xref "UniSTS_NUM:66864"/db_xref "UniSTS:G22062"/note "map_weight=1"STS complement(658543..658670)/standard_name "RH12449"/db_xref "UniSTS_NUM:76451"/db_xref "UniSTS:RH12449"/db_xref "GM99-GB4:stSG3774"/note "map_weight=1"STS complement(684688..684818)/standard_name "A006A03"/db_xref "UniSTS_NUM:41216"/db_xref "UniSTS:A006A03"/note "map_weight=1"STS complement(684688..684818)/standard_name "G20641"/db_xref "UniSTS_NUM:41217"/db_xref "UniSTS:G20641"/note "map_weight=1"STS complement(703954..704452)/standard_name "141173"/db_xref "UniSTS_NUM:141173"/note "map_weight=1"STS complement(704257..704403)/standard_name "DXS6984E"/db_xref "UniSTS_NUM:2498"/db_xref "UniSTS:DXS6984E"/db_xref "GM99-GB4:stSG2932"/note "map_weight=1"STS complement(704291..704471)/standard_name "STS-M38188"/db_xref "UniSTS_NUM:60882"/db_xref "UniSTS:STS-M38188"/note "map_weight=1"STS complement(704352..704489)/standard_name "D5S2593"/db_xref "UniSTS_NUM:32572"/db_xref "UniSTS:D5S2593"/db_xref "UniSTS:G13550"/note "map_weight=1"STS complement(732457..732578)/standard_name "AL035140"/db_xref "UniSTS_NUM:94651"/db_xref "UniSTS:AL035140"/note "map_weight=1"STS complement(754777..754899)/standard_name "AL035146"/db_xref "UniSTS_NUM:94658"/db_xref "UniSTS:AL035146"/note "map_weight=1"STS complement(792227..792346)/standard_name "AF020181"/db_xref "UniSTS_NUM:39479"/db_xref "UniSTS:AF020181"/db_xref "WUSTL-X:sWXD3585"/note "map_weight=1"STS complement(796966..797049)/standard_name "L77845"/db_xref "UniSTS_NUM:57902"/db_xref "UniSTS:L77845"/db_xref "WUSTL-X:sWXD2783"/note "map_weight=1"STS complement(803577..803776)/standard_name "DXS1106"/db_xref "UniSTS_NUM:30651"/db_xref "UniSTS:DXS1106"/db_xref "GM99-GB4:AFM263we1"/db_xref "TNG:SHGC-1092"/note "map_weight=1"STS complement(803580..803758)/standard_name "DXS1106"/db_xref "UniSTS_NUM:63232"/db_xref "UniSTS:Z17276"/db_xref "UniSTS:DXS1106"/db_xref "Genethon:AFM263we1"/db_xref "WUSTL-X:sWXD672"/note "map_weight=1"STS complement(804260..804395)/standard_name "AF020152"/db_xref "UniSTS_NUM:45420"/db_xref "UniSTS:AF020152"/db_xref "WUSTL-X:sWXD3586"/note "map_weight=1"STS complement(853592..853826)/standard_name "DXS8096"/db_xref "UniSTS_NUM:21236"/db_xref "UniSTS:DXS8096"/db_xref "UniSTS:Z51652"/db_xref "GM99-G3:AFMa051tc5"/db_xref "SHGC-G3:SHGC-21230"/note "map_weight=1"STS complement(853592..853864)/standard_name "SHGC-150960"/db_xref "UniSTS_NUM:173428"/db_xref "UniSTS:SHGC-150960"/note "map_weight=1"STS complement(906210..906384)/standard_name "AL008935"/db_xref "UniSTS_NUM:79896"/db_xref "UniSTS:AL008935"/note "map_weight=1"STS complement(914019..914122)/standard_name "STS-W88790"/db_xref "UniSTS_NUM:82788"/db_xref "UniSTS:STS-W88790"/note "map_weight=1"STS complement(914808..914927)/standard_name "SHGC-52701"/db_xref "UniSTS_NUM:11495"/db_xref "UniSTS:SHGC-52701"/db_xref "UniSTS:G36701"/note "map_weight=1"STS complement(916610..916774)/standard_name "RH45868"/db_xref "UniSTS_NUM:63171"/db_xref "UniSTS:RH45868"/db_xref "GM99-GB4:stSG21595"/note "map_weight=1"STS complement(936075..936201)/standard_name "RH78743"/db_xref "UniSTS_NUM:4877"/db_xref "UniSTS:RH78743"/db_xref "GM99-GB4:stSG42368"/note "map_weight=2"STS complement(936198..936325)/standard_name "SHGC-34973"/db_xref "UniSTS_NUM:23617"/db_xref "UniSTS:SHGC-34973"/db_xref "UniSTS:G29704"/note "map_weight=1"STS complement(939033..939162)/standard_name "RH17462"/db_xref "UniSTS_NUM:41304"/db_xref "UniSTS:H03933"/db_xref "UniSTS:RH17462"/note "map_weight=1"STS complement(939050..939161)/standard_name "A005E02"/db_xref "UniSTS_NUM:56778"/db_xref "UniSTS:G26235"/db_xref "UniSTS:R62801"/db_xref "UniSTS:A005E02"/db_xref "WI-RH:TIGR-A005E02"/note "map_weight=1"STS complement(956876..956996)/standard_name "STS-M99701"/db_xref "UniSTS_NUM:21153"/db_xref "UniSTS:STS-M99701"/note "map_weight=1"STS complement(957185..957362)/standard_name "RH80258"/db_xref "UniSTS_NUM:91622"/db_xref "UniSTS:RH80258"/db_xref "GM99-GB4:sts-AA040895"/note "map_weight=1"misc_feature 1..109496/note "contig AL035427.17.1.161273 51778..161273(1)"misc_feature 109497..189301/note "contig AL590407.8.1.81805 2001..81805(1)"misc_feature 189302..225201/note "contig Z68871.2.1.37899 1..35900(-1)"misc_feature 225202..230371/note "contig AL669904.1.1.5270 101..5270(1)"misc_feature 230372..267593/note "contig Z95624.1.1.37322 1..37222(-1)"misc_feature 267594..267689/note "contig AL645812.1.1.195 100..195(1)"misc_feature 267690..282719/note "contig Z93943.1.1.15130 1..15030(-1)"misc_feature 282720..327653/note "contig Z75895.1.1.45038 1..44934(-1)"misc_feature 327654..365457/note "contig Z73361.1.1.40509 1..37804(-1)"misc_feature 365458..401071/note "contig AL008708.4.1.35714 101..35714(1)"misc_feature 401072..438735/note "contig Z75746.1.1.37764 1..37664(-1)"misc_feature 438736..478402/note "contig Z85997.1.1.40600 1..39667(-1)"misc_feature 478403..547950/note "contig AL035494.8.1.69648 101..69648(1)"misc_feature 547951..564664/note "contig Z81014.1.1.16814 1..16714(-1)"misc_feature 564665..605385/note "contig Z68694.1.1.40822 1..40721(-1)"misc_feature 605386..645869/note "contig AL133348.8.1.40584 101..40584(1)"misc_feature 645870..689721/note "contig Z92846.2.1.43952 101..43952(1)"misc_feature 689722..749434/note "contig AL606763.6.1.61713 2001..61713(1)"misc_feature 749435..754942/note "contig AL079333.8.1.7508 2001..7508(1)"misc_feature 754943..807439/note "contig AL117327.5.1.52597 101..52597(1)"misc_feature 807440..848370/note "contig Z69733.1.1.41031 1..40931(-1)"misc_feature 848371..875749/note "contig AL035444.9.1.27479 101..27479(1)"misc_feature 875750..897175/note "contig AL021308.1.1.21526 101..21526(1)"misc_feature 897176..939757/note "contig Z73965.1.1.42686 1..42582(-1)"misc_feature 939758..944624/note "contig Z68327.1.1.4968 1..4867(-1)"misc_feature 944625..1000000/note "contig AL049610.9.1.100269 99..55474(1)" Stack trace follows .... at org.biojavax.bio.seq.io.GenbankFormat.readRichSequence(GenbankFormat.java:462) at org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) ... 1 more From holland at eaglegenomics.com Sat Nov 15 11:59:05 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Sat, 15 Nov 2008 16:59:05 +0000 Subject: [Biojava-l] An Exception Has Occurred During Parsing ensembl Genbank file Homo_sapiens.0.dat In-Reply-To: <491EEEC0.7090209@gmail.com> References: <491EEA74.4080902@gmail.com> <491EEEC0.7090209@gmail.com> Message-ID: Based on the error stack you previously gave, it seems it is a data problem. Seeing as you've already got the file downloaded, could you filter out all the 'dbxref' lines using grep or something similar, then construct a regex to see if any of them do not match the 'dbxref="something:accession"' pattern? I suspect you'll find at least one, in which case it is indeed a data problem and needs to be addressed to the Ensembl helpdesk so they can correct their dump files. cheers, Richard 2008/11/15 pprun : > It is too large to send it by email, the exactly file name is: > Homo_sapiens.0.dat > The exception took place when first X Chr. sequence was encountered. > > Hope this can help a bit. > - Pprun > > > Richard Holland ??: >> >> There are many files on that site. I need to know which specific one >> you are working with so that I can also attempt to parse it with some >> debugging options turned on. >> >> Could you attach the file you are using to an email if possible? >> >> cheers, >> Richard >> >> >> 2008/11/15 pprun : >> >>> >>> Hi Richard, >>> Did the original file you mean is the ensembl genbank file? >>> If so, you can get it from ensembl website >>> ftp://ftp.ensembl.org/pub/current_genbank/homo_sapiens/ >>> >>> >>> >>> Richard Holland ??: >>> >>> This exception occurs when the Genbank file contains a db_xref entry >>> that does not follow the format "Type:Accession". >>> >>> It's hard to tell if this is the problem here without seeing the original >>> file. >>> >>> cheers, >>> Richard >>> >>> 2008/11/15 pprun : >>> >>> >>> Environments: >>> ------------- >>> Biojava: 1.6 >>> Java: 1.6.0_10; Java HotSpot(TM) Client VM 11.0-b15 >>> System: Linux version 2.6.24-21-generic running on i386; UTF-8; zh_CN >>> >>> >>> The detail: >>> -------------- >>> Format_object=org.biojavax.bio.seq.io.GenbankFormat >>> Accession=chromosome:NCBI36:X:101815144:102815143:1 >>> Id=null >>> Comments=Bad dbxref >>> Parse_block=FEATURES Location/Qualifierssource 1..1000000/organism >>> "Homo sapiens"/db_xref "taxon:9606"gene complement(5148..5254)/gene >>> ENSG00000193147/locus_tag "AL035427.17"misc_RNA >>> complement(5148..5254)/gene "ENSG00000193147"/db_xref >>> "Clone_based_ensembl_transcri:AL035427.17-201"/db_xref > ... > > [Message clipped] -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From holland at eaglegenomics.com Tue Nov 18 22:36:27 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Wed, 19 Nov 2008 03:36:27 +0000 Subject: [Biojava-l] BioJava 3 code usage examples Message-ID: I've posted some brief HOWTOs here on how to use the new code as it progresses: http://biojava.org/wiki/BioJava3:HowTo Hopefully the examples will make the new approach a bit clearer. The FASTA parser example does need simplifying even further, through a standard file parser utility class to go in the core module which has yet to be written. But the examples on the page are a start and show you what the convenience methods would have to implement internally (hint, hint!). cheers, Richard -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From holland at eaglegenomics.com Wed Nov 26 11:04:56 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Wed, 26 Nov 2008 16:04:56 +0000 Subject: [Biojava-l] BugZilla! Message-ID: <492D73A8.4020401@eaglegenomics.com> Hi all, There's been a few new bugs reported on BugZilla recently. Whilst the development of the new BJ features is fun, it's really important to maintain the existing code and keep on top of the issues reported. If there's anyone with a few minutes spare, or would like to learn BioJava and don't know where to start - then zapping a few virtual creepy crawlies is an excellent way to get involved and make a contribution. Here's the list of the currently outstanding problems: http://bugzilla.open-bio.org/buglist.cgi?product=BioJava&bug_status=NEW&bug_status=ASSIGNED&bug_status=REOPENED If you see one you think you can fix, or might like to try to investigate, go for it! All you have to do is assign the bug to yourself in order to take ownership of it so that people don't end up working on the same thing without knowing. cheers, Richard -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From mark.schreiber at novartis.com Wed Nov 26 21:33:05 2008 From: mark.schreiber at novartis.com (mark.schreiber at novartis.com) Date: Thu, 27 Nov 2008 10:33:05 +0800 Subject: [Biojava-l] BugZilla! In-Reply-To: <492D73A8.4020401@eaglegenomics.com> Message-ID: Hi - I would concur with this. BioJava is volunteer based and requires people to volunteer before things happen. In my experience bug reports get resolved most rapidly if the person reporting the bug can do as much of their own investigation as possible. Have a good look at the stack trace and try using a debugger. You can rapidly narrow down the underlying cause. Even if you are not confident about the best way to fix the problem, armed with all the relevant information someone more experienced will be able to tell you if you are on the right track. Unit tests are also good here. For one thing they will set-up a situation to replicate your bug. They will also provide a way to make sure the bug doesn't happen again in future releases. Finally, the more unit tests there are the more confident you can be that your proposed bug fix won't break anything else. Helping fix stuff in BioJava will definitely improve you're programming skills and greatly increase your knowledge of how the API works so by helping others you are probably helping yourself more. - Mark biojava-l-bounces at lists.open-bio.org wrote on 11/27/2008 12:04:56 AM: > Hi all, > > There's been a few new bugs reported on BugZilla recently. Whilst the > development of the new BJ features is fun, it's really important to > maintain the existing code and keep on top of the issues reported. > > If there's anyone with a few minutes spare, or would like to learn > BioJava and don't know where to start - then zapping a few virtual > creepy crawlies is an excellent way to get involved and make a contribution. > > Here's the list of the currently outstanding problems: > > http://bugzilla.open-bio.org/buglist.cgi? > product=BioJava&bug_status=NEW&bug_status=ASSIGNED&bug_status=REOPENED > > If you see one you think you can fix, or might like to try to > investigate, go for it! All you have to do is assign the bug to yourself > in order to take ownership of it so that people don't end up working on > the same thing without knowing. > > cheers, > Richard > > -- > Richard Holland, BSc MBCS > Finance Director, Eagle Genomics Ltd > M: +44 7500 438846 | E: holland at eaglegenomics.com > http://www.eaglegenomics.com/ > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l _________________________ CONFIDENTIALITY NOTICE The information contained in this e-mail message is intended only for the exclusive use of the individual or entity named above and may contain information that is privileged, confidential or exempt from disclosure under applicable law. If the reader of this message is not the intended recipient, or the employee or agent responsible for delivery of the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify the sender immediately by e-mail and delete the material from any computer. Thank you. From community at struck.lu Mon Nov 3 10:12:34 2008 From: community at struck.lu (community at struck.lu) Date: Mon, 03 Nov 2008 15:12:34 -0000 Subject: [Biojava-l] SCF: support for ambiguities In-Reply-To: References: Message-ID: I have added the missing ambiguities to DNATools.java and then used these in SCF.java. The two patches are appended to this email. Greetings, Daniel "Richard Holland" wrote: > A patch would be much appreciated! > > cheers, > Richard > > 2008/10/31 community at struck.lu : > > True. It was a first quick and dirty hack to get the rest of my project > going. > > > > I think adding support of the IUPAC ambiguities to DNATools would be the > most > > approbate solution. The SCF class can then easily be adapted. > > > > Are there any plans to do so? > > If not, I could give it a try and submit a patch for DNATools and SCF. > > > > Greetings, > > Daniel > > > > "Richard Holland" wrote: > > > >> It is the correct method, yes. > >> > >> However your code constructs a new hash set every time it does the > >> check for W or S etc.. It would be much more efficient to create > >> class-static references to the ambiguity symbols you need, instead of > >> (re)creating them every time they're encountered. A class-static gap > >> symbol reference would also be good in this situation. > >> > >> cheers, > >> Richard > >> > >> > >> > >> 2008/10/31 community at struck.lu : > >> > Hello, > >> > > >> > > >> > I am using the SCF class in the context of HIV-1 population sequencing. > In > >> > this context we do have sometimes ambiguous base calls. To support them I > >> > extended the SCF class to allow for IUPAC ambiguities up to 2 > nucleotides. > >> > > >> > Therefore I simply added the following code to the "decode" function: > >> > > >> > ######################### > >> > public Symbol decode(byte call) throws IllegalSymbolException { > >> > > >> > //get the DNA Alphabet > >> > Alphabet dna = DNATools.getDNA(); > >> > > >> > char c = (char) call; > >> > switch (c) { > >> > case 'a': > >> > case 'A': > >> > return DNATools.a(); > >> > case 'c': > >> > case 'C': > >> > return DNATools.c(); > >> > case 'g': > >> > case 'G': > >> > return DNATools.g(); > >> > case 't': > >> > case 'T': > >> > return DNATools.t(); > >> > case 'n': > >> > case 'N': > >> > return DNATools.n(); > >> > case '-': > >> > return DNATools.getDNA().getGapSymbol(); > >> > case 'w': > >> > case 'W': > >> > //make the 'W' symbol > >> > Set symbolsThatMakeW = new HashSet(); > >> > symbolsThatMakeW.add(DNATools.a()); > >> > symbolsThatMakeW.add(DNATools.t()); > >> > Symbol w = dna.getAmbiguity(symbolsThatMakeW); > >> > return w; > >> > case 's': > >> > case 'S': > >> > //make the 'S' symbol > >> > Set symbolsThatMakeS = new HashSet(); > >> > symbolsThatMakeS.add(DNATools.c()); > >> > symbolsThatMakeS.add(DNATools.g()); > >> > Symbol s = dna.getAmbiguity(symbolsThatMakeS); > >> > return s; > >> > ... (and so on) > >> > ######################### > >> > > >> > Is this the right way to do it? And if so, how can this code be submitted > > to > >> > the official biojava source code? > >> > > >> > > >> > Best regards, > >> > Daniel Struck > >> > _________________________________________________________ > >> > Mail sent using root eSolutions Webmailer - www.root.lu > >> > > >> > > >> > _______________________________________________ > >> > Biojava-l mailing list - Biojava-l at lists.open-bio.org > >> > http://lists.open-bio.org/mailman/listinfo/biojava-l > >> > > >> > >> > > > > > > _________________________________________________________ > > Mail sent using root eSolutions Webmailer - www.root.lu > > > > > > > > _________________________________________________________ Mail sent using root eSolutions Webmailer - www.root.lu -------------- next part -------------- A non-text attachment was scrubbed... Name: DNATools.diff Type: text/x-diff Size: 2128 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: SCF.diff Type: text/x-diff Size: 1149 bytes Desc: not available URL: From holland at eaglegenomics.com Sat Nov 15 04:29:11 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Sat, 15 Nov 2008 09:29:11 -0000 Subject: [Biojava-l] An Exception Has Occurred During Parsing ensembl Genbank file Homo_sapiens.0.dat In-Reply-To: References: Message-ID: This exception occurs when the Genbank file contains a db_xref entry that does not follow the format "Type:Accession". It's hard to tell if this is the problem here without seeing the original file. cheers, Richard 2008/11/15 pprun : > Environments: > ------------- > Biojava: 1.6 > Java: 1.6.0_10; Java HotSpot(TM) Client VM 11.0-b15 > System: Linux version 2.6.24-21-generic running on i386; UTF-8; zh_CN > > > The detail: > -------------- > Format_object=org.biojavax.bio.seq.io.GenbankFormat > Accession=chromosome:NCBI36:X:101815144:102815143:1 > Id=null > Comments=Bad dbxref > Parse_block=FEATURES Location/Qualifierssource 1..1000000/organism > "Homo sapiens"/db_xref "taxon:9606"gene complement(5148..5254)/gene > ENSG00000193147/locus_tag "AL035427.17"misc_RNA > complement(5148..5254)/gene "ENSG00000193147"/db_xref > "Clone_based_ensembl_transcri:AL035427.17-201"/db_xref > "RFAM:RF00026"/db_xref "AFFY_HuEx_1_0_st_v2:3985294"/note > "snRNA"/note "transcript_id=ENST00000348857"gene 32225..32681/gene > ENSG00000220050/locus_tag "RP4-769N13.2"misc_RNA 32225..32681/gene > "ENSG00000220050"/db_xref "AgilentProbe:A_32_P940920"/db_xref > "Clone_based_vega_transcript:RP4-769N13.2-001"/db_xref > "OTTT:OTTHUMT00000057625"/note "processed_pseudogene"/note > "transcript_id=ENST00000405532"gene 38617..44173/gene > ENSG00000158301/locus_tag "GPRASP2"/note "G-protein coupled > receptor-associated sorting > protein 2 (GASP-2). [Source:Uniprot/SWISSPROT;Acc:Q96D09]"mRNA > join(38617..38993,40223..40290,40630..40707,40978..44173)/gene > "ENSG00000158301"/note "transcript_id=ENST00000332262"CDS > 41311..43827/gene "ENSG00000158301"/protein_id > "ENSP00000339057"/note "transcript_id=ENST00000332262"/db_xref > "HGNC:GPRASP2"/db_xref "CCDS:CCDS14501.1"/db_xref > "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref > "RefSeq_peptide:NP_001004051.1"/db_xref > "RefSeq_peptide:NP_612446.1"/db_xref > "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref > "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref > "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref > "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref > "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref > "HGNC_curated_transcript:GPRASP2-001"/db_xref > "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref > "UniGene:Hs.603154"/db_xref "protein_id:AAH13576.1"/db_xref > "protein_id:AAH36772.1"/db_xref "protein_id:BAC04010.1"/db_xref > "protein_id:BAC04692.1"/db_xref "protein_id:CAI43060.1"/db_xref > "AFFY_HG_U133B:228027_at"/db_xref > "AFFY_HG_U133_Plus_2:228027_at"/db_xref > "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref > "AFFY_HuEx_1_0_st_v2:4016236"/db_xref > "AFFY_HuEx_1_0_st_v2:4016243"/db_xref > "AFFY_HuEx_1_0_st_v2:4016244"/db_xref > "AFFY_HuEx_1_0_st_v2:4016261"/db_xref > "AFFY_HuEx_1_0_st_v2:4016262"/db_xref > "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref > "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref > "Illumina_V2:ILMN_8313"/db_xref "OTTT:OTTHUMT00000057626"/db_xref > "shares_CDS_with_OTTT:GPRASP2-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057626"/translation > "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA > TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA > RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES > GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA > SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA > YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF > YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW > AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG > SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF > RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE > IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR > SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV > CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK > MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL > IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"mRNA > join(38853..38993,39571..39658,40223..40290,40630..40707, > 40978..44173)/gene "ENSG00000158301"/note > "transcript_id=ENST00000340885"CDS 41311..43827/gene > "ENSG00000158301"/protein_id "ENSP00000342986"/note > "transcript_id=ENST00000340885"/db_xref "CCDS:CCDS14501.1"/db_xref > "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref > "RefSeq_peptide:NP_001004051.1"/db_xref > "RefSeq_peptide:NP_612446.1"/db_xref "RefSeq_dna:NM_001004051"/db_xref > "RefSeq_dna:NM_138437"/db_xref > "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref > "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref > "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref > "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref > "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref > "HGNC_automatic_transcript:GPRASP2-201"/db_xref > "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref > "UniGene:Hs.603154"/db_xref "UniGene:Hs.656888"/db_xref > "protein_id:AAH13576.1"/db_xref "protein_id:AAH36772.1"/db_xref > "protein_id:BAC04010.1"/db_xref "protein_id:BAC04692.1"/db_xref > "protein_id:CAI43060.1"/db_xref "AFFY_HG_U133B:228027_at"/db_xref > "AFFY_HG_U133_Plus_2:228027_at"/db_xref > "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref > "AFFY_HuEx_1_0_st_v2:4016244"/db_xref > "AFFY_HuEx_1_0_st_v2:4016261"/db_xref > "AFFY_HuEx_1_0_st_v2:4016262"/db_xref > "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref > "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref > "Illumina_V2:ILMN_8313"/translation > "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA > TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA > RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES > GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA > SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA > YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF > YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW > AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG > SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF > RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE > IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR > SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV > CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK > MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL > IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"gene 47167..79981/gene > ENSG00000198908/locus_tag "BHLHB9"/note "Protein BHLHB9 (bHLHB9) > (Transcription regulator of > 60 kDa) (p60TRP). [Source:Uniprot/SWISSPROT;Acc:Q6PI77]"mRNA > join(47167..47262,47398..47532,75140..78879)/gene > "ENSG00000198908"/note "transcript_id=ENST00000372738"CDS > 75437..77080/gene "ENSG00000198908"/protein_id > "ENSP00000361823"/note "transcript_id=ENST00000372738"/db_xref > "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref > "RefSeq_peptide:NP_085142.1"/db_xref "RefSeq_dna:NM_030639"/db_xref > "EntrezGene:BHLHB9"/db_xref "AgilentProbe:A_23_P308954"/db_xref > "AgilentProbe:A_32_P348800"/db_xref > "AgilentProbe:A_32_P796164"/db_xref > "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref > "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref > "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref > "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-002"/db_xref > "IPI:IPI00513802.1"/db_xref "UniGene:Hs.4276"/db_xref > "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref > "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref > "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref > "AFFY_HG_U133A_2:213709_at"/db_xref > "AFFY_HG_U133_Plus_2:213709_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3937803"/db_xref > "AFFY_HuEx_1_0_st_v2:4016264"/db_xref > "AFFY_HuEx_1_0_st_v2:4016266"/db_xref > "AFFY_HuEx_1_0_st_v2:4016274"/db_xref > "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref > "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref > "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref > "OTTT:OTTHUMT00000057631"/db_xref > "shares_CDS_with_OTTT:BHLHB9-002"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057631"/translation > "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA > KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK > NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK > PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT > IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ > PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS > TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP > SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF > HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA > IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"mRNA > join(47167..47262,47398..47532,75140..78879)/gene > "ENSG00000198908"/note "transcript_id=ENST00000361229"CDS > 75368..77080/gene "ENSG00000198908"/protein_id > "ENSP00000354675"/note "transcript_id=ENST00000361229"/db_xref > "HGNC:BHLHB9"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref > "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref > "AgilentProbe:A_23_P308954"/db_xref > "AgilentProbe:A_32_P348800"/db_xref > "AgilentProbe:A_32_P796164"/db_xref > "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref > "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref > "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref > "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_automatic_transcript:BHLHB9-201"/db_xref > "IPI:IPI00513802.1"/db_xref "IPI:IPI00844393.1"/db_xref > "UniGene:Hs.4276"/db_xref "protein_id:AAH41409.1"/db_xref > "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref > "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref > "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref > "AFFY_HG_U133_Plus_2:213709_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3937803"/db_xref > "AFFY_HuEx_1_0_st_v2:4016264"/db_xref > "AFFY_HuEx_1_0_st_v2:4016266"/db_xref > "AFFY_HuEx_1_0_st_v2:4016274"/db_xref > "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref > "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref > "Illumina_V1:GI_39930462-S"/db_xref > "Illumina_V2:ILMN_3098"/translation > "DFDLGHIENQGQDWTGPYNWASTMAGTKNKTRAQAKTEKKAAIQ > AKAGAEREATGVVRPVAKTRAKAKAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPK > TLGKAMGDFTPKAGNESTSSTCKNEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKN > DKPEIGAQVCAEELEPAAGADCKPRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSR > IVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAE > ENACSLPVATACRPSRNTRSCSQPIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFA > CPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTL > IESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLK > ILGQLTTDFVHHYIVANYFSELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMK > ALAALKLIFNQKEAKANLVSGVAIFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEI > IETM"mRNA > join(72535..72615,74026..74137,74258..74352,75140..79981)/gene > "ENSG00000198908"/note "transcript_id=ENST00000372735"CDS > 75437..77080/gene "ENSG00000198908"/protein_id > "ENSP00000361820"/note "transcript_id=ENST00000372735"/db_xref > "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref > "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref > "AgilentCGH:A_14_P200664"/db_xref "AgilentProbe:A_23_P308954"/db_xref > "AgilentProbe:A_32_P348800"/db_xref > "AgilentProbe:A_32_P796164"/db_xref > "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref > "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref > "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref > "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-001"/db_xref > "IPI:IPI00513802.1"/db_xref "UniGene:Hs.603894"/db_xref > "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref > "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref > "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref > "AFFY_HG_U133A_2:213709_at"/db_xref > "AFFY_HG_U133_Plus_2:213709_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3937803"/db_xref > "AFFY_HuEx_1_0_st_v2:4016224"/db_xref > "AFFY_HuEx_1_0_st_v2:4016270"/db_xref > "AFFY_HuEx_1_0_st_v2:4016274"/db_xref > "AFFY_HuEx_1_0_st_v2:4016276"/db_xref > "AFFY_HuEx_1_0_st_v2:4016277"/db_xref > "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref > "Codelink:GE54272"/db_xref "Codelink:GE822399"/db_xref > "Illumina_V1:GI_14769619-S"/db_xref > "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref > "OTTP:59431"/db_xref "OTTP:OTTHUMP00000023715"/db_xref > "OTTT:OTTHUMT00000057630"/translation > "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA > KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK > NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK > PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT > IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ > PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS > TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP > SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF > HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA > IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"gene 99642..99712/gene > ENSG00000209002/locus_tag "AL035427.17"misc_RNA 99642..99712/gene > "ENSG00000209002"/db_xref > "Clone_based_ensembl_transcri:AL035427.17-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386267"gene > 112108..113045/gene ENSG00000216245/locus_tag "RP11-522L3.1"misc_RNA > 112108..113045/gene "ENSG00000216245"/db_xref > "Clone_based_vega_transcript:RP11-522L3.1-001"/db_xref > "OTTT:OTTHUMT00000057652"/note "processed_pseudogene"/note > "transcript_id=ENST00000404960"gene 113050..113109/gene > ENSG00000208995/locus_tag "AL590407.8"misc_RNA 113050..113109/gene > "ENSG00000208995"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386260"gene > 113185..113253/gene ENSG00000208993/locus_tag "AL590407.8"misc_RNA > 113185..113253/gene "ENSG00000208993"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386258"gene > 113254..114828/gene ENSG00000218436/locus_tag "RP11-522L3.2"misc_RNA > join(113254..113638,114269..114828)/gene "ENSG00000218436"/db_xref > "Clone_based_vega_transcript:RP11-522L3.2-001"/db_xref > "OTTT:OTTHUMT00000057653"/note "processed_pseudogene"/note > "transcript_id=ENST00000403360"gene 122692..123510/gene > ENSG00000220260/locus_tag "RP11-522L3.3"misc_RNA > join(122692..122931,123275..123510)/gene "ENSG00000220260"/db_xref > "Clone_based_vega_transcript:RP11-522L3.3-001"/db_xref > "AFFY_HuEx_1_0_st_v2:4016279"/db_xref > "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057654"/note > "processed_pseudogene"/note "transcript_id=ENST00000407716"gene > complement(123532..123603)/gene ENSG00000208991/locus_tag > "AL590407.8"misc_RNA complement(123532..123603)/gene > "ENSG00000208991"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386256"gene > 123970..124556/gene ENSG00000219427/locus_tag "RP11-522L3.4"misc_RNA > 123970..124556/gene "ENSG00000219427"/db_xref > "Clone_based_vega_transcript:RP11-522L3.4-001"/db_xref > "AFFY_HuEx_1_0_st_v2:4016279"/db_xref > "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057655"/note > "processed_pseudogene"/note "transcript_id=ENST00000406243"gene > 124837..126001/gene ENSG00000218342/locus_tag "RP11-522L3.5"misc_RNA > join(124837..125403,125910..126001)/gene "ENSG00000218342"/db_xref > "Clone_based_vega_transcript:RP11-522L3.5-001"/db_xref > "OTTT:OTTHUMT00000057656"/note "processed_pseudogene"/note > "transcript_id=ENST00000407350"gene 126004..126327/gene > ENSG00000220461/locus_tag "RP11-522L3.6"misc_RNA 126004..126327/gene > "ENSG00000220461"/db_xref > "Clone_based_vega_transcript:RP11-522L3.6-001"/db_xref > "OTTT:OTTHUMT00000057657"/note "processed_pseudogene"/note > "transcript_id=ENST00000403529"gene 126383..127840/gene > ENSG00000220086/locus_tag "RP11-522L3.7"misc_RNA > join(126383..127532,127754..127840)/gene "ENSG00000220086"/db_xref > "Clone_based_vega_transcript:RP11-522L3.7-001"/db_xref > "OTTT:OTTHUMT00000057648"/note "processed_pseudogene"/note > "transcript_id=ENST00000405058"gene 127842..127907/gene > ENSG00000208988/locus_tag "AL590407.8"misc_RNA 127842..127907/gene > "ENSG00000208988"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386253"gene > 129354..129411/gene ENSG00000208986/locus_tag "AL590407.8"misc_RNA > 129354..129411/gene "ENSG00000208986"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref > "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note > "transcript_id=ENST00000386251"gene 129412..129481/gene > ENSG00000208977/locus_tag "AL590407.8"misc_RNA 129412..129481/gene > "ENSG00000208977"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref > "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note > "transcript_id=ENST00000386242"gene 129482..132579/gene > ENSG00000216547/locus_tag "RP11-522L3.8"misc_RNA > join(129482..129726,131073..132579)/gene "ENSG00000216547"/db_xref > "Clone_based_vega_transcript:RP11-522L3.8-001"/db_xref > "AFFY_HuEx_1_0_st_v2:2778904"/db_xref "OTTT:OTTHUMT00000057649"/note > "processed_pseudogene"/note "transcript_id=ENST00000402841"gene > complement(132605..133087)/gene ENSG00000217506/locus_tag > "RP11-522L3.9"misc_RNA complement(132605..133087)/gene > "ENSG00000217506"/db_xref > "Clone_based_vega_transcript:RP11-522L3.9-001"/db_xref > "OTTT:OTTHUMT00000057650"/note "processed_pseudogene"/note > "transcript_id=ENST00000403019"gene 133182..134268/gene > ENSG00000218097/locus_tag "RP11-522L3.11"misc_RNA > 133182..134268/gene "ENSG00000218097"/db_xref > "Clone_based_vega_transcript:RP11-522L3.11-001"/db_xref > "AFFY_HuEx_1_0_st_v2:4016280"/db_xref > "AFFY_HuGene_1_0_st_v1:8174199"/db_xref "OTTT:OTTHUMT00000057651"/note > "processed_pseudogene"/note "transcript_id=ENST00000401627"gene > complement(134334..134386)/gene ENSG00000208972/locus_tag > "AL590407.8"misc_RNA complement(134334..134386)/gene > "ENSG00000208972"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386237"gene > 135559..135629/gene ENSG00000208969/locus_tag "AL590407.8"misc_RNA > 135559..135629/gene "ENSG00000208969"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386234"gene > 136559..136627/gene ENSG00000208964/locus_tag "AL590407.8"misc_RNA > 136559..136627/gene "ENSG00000208964"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386229"gene > 263713..264741/gene ENSG00000102128/locus_tag "RAB40AL"/note > "Ras-related protein Rab-40A-like (Ras-like GTPase). > [Source:Uniprot/SWISSPROT;Acc:P0C0E4]"mRNA 263713..264741/gene > "ENSG00000102128"/note "transcript_id=ENST00000218249"CDS > 263760..264596/gene "ENSG00000102128"/protein_id > "ENSP00000218249"/note "transcript_id=ENST00000218249"/db_xref > "HGNC:RAB40AL"/db_xref "CCDS:CCDS35353.1"/db_xref > "Uniprot/SWISSPROT:RB40L_HUMAN"/db_xref > "RefSeq_peptide:NP_001027004.1"/db_xref > "RefSeq_dna:NM_001031834"/db_xref "EntrezGene:RAB40AL"/db_xref > "AgilentProbe:A_32_P88717"/db_xref "AgilentProbe:A_32_P88719"/db_xref > "EMBL:BC101169"/db_xref "EMBL:BC101170"/db_xref > "EMBL:BC101171"/db_xref "EMBL:BC101172"/db_xref > "EMBL:Z95624"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref > "GO:GO:0005739"/db_xref "GO:GO:0005886"/db_xref > "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref > "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref > "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref > "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40AL-001"/db_xref > "IPI:IPI00555763.1"/db_xref "MIM_GENE:300405"/db_xref > "UniGene:Hs.449517"/db_xref "protein_id:AAI01170.1"/db_xref > "protein_id:AAI01171.1"/db_xref "protein_id:AAI01172.1"/db_xref > "protein_id:AAI01173.1"/db_xref "protein_id:CAB09136.1"/db_xref > "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref > "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref > "AFFY_HG_U133_Plus_2:215782_at"/db_xref > "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref > "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref > "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3985604"/db_xref > "AFFY_HuEx_1_0_st_v2:3985605"/db_xref > "AFFY_HuEx_1_0_st_v2:4016299"/db_xref > "AFFY_HuGeneFL:Z95624_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref > "Illumina_V2:ILMN_24932"/db_xref "OTTT:OTTHUMT00000057679"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057679"/db_xref > "shares_CDS_with_OTTT:RAB40AL-001"/translation > "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYS > HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF > EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN > FNIIESFTELARIVLLRHRLNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIAL > RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCK > IS"gene 333902..334513/gene ENSG00000219659/locus_tag > "LL0XNC01-73E8.1"misc_RNA 333902..334513/gene > "ENSG00000219659"/db_xref > "Clone_based_vega_transcript:LL0XNC01-73E8.1-001"/db_xref > "OTTT:OTTHUMT00000057683"/note "processed_pseudogene"/note > "transcript_id=ENST00000406951"gene complement(389101..390681)/gene > ENSG00000133169/locus_tag "BEX1"/note "Protein BEX1 (Brain-expressed > X-linked protein 1). > [Source:Uniprot/SWISSPROT;Acc:Q9HBH7]"mRNA > join(complement(390537..390681), > complement(390083..390172),complement(389101..389720))/gene > "ENSG00000133169"/note "transcript_id=ENST00000372728"CDS > complement(389338..389715)/gene "ENSG00000133169"/protein_id > "ENSP00000361813"/note "transcript_id=ENST00000372728"/db_xref > "HGNC:BEX1"/db_xref "CCDS:CCDS35354.1"/db_xref > "Uniprot/SWISSPROT:BEX1_HUMAN"/db_xref > "RefSeq_peptide:NP_060946.3"/db_xref "RefSeq_dna:NM_018476"/db_xref > "EntrezGene:BEX1"/db_xref "AgilentProbe:A_23_P159952"/db_xref > "AgilentProbe:A_32_P168503"/db_xref "EMBL:AF183416"/db_xref > "EMBL:AF220189"/db_xref "EMBL:AF237783"/db_xref > "EMBL:AK290958"/db_xref "EMBL:AL008708"/db_xref > "EMBL:AY833561"/db_xref "EMBL:BC126427"/db_xref > "EMBL:BC126429"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0007275"/db_xref > "GO:GO:0007399"/db_xref "GO:GO:0030154"/db_xref > "HGNC_curated_transcript:BEX1-001"/db_xref "IPI:IPI00020533.4"/db_xref > "MIM_GENE:300690"/db_xref "protein_id:AAF67654.1"/db_xref > "protein_id:AAG09685.1"/db_xref "protein_id:AAG09752.1"/db_xref > "protein_id:AAI26428.1"/db_xref "protein_id:AAI26430.1"/db_xref > "protein_id:AAX40679.1"/db_xref "protein_id:BAF83647.1"/db_xref > "protein_id:CAI42418.1"/db_xref "AFFY_HG_U133A:218332_at"/db_xref > "AFFY_HG_U133A_2:218332_at"/db_xref > "AFFY_HG_U133_Plus_2:218332_at"/db_xref > "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref > "AFFY_HuEx_1_0_st_v2:3985407"/db_xref > "AFFY_HuEx_1_0_st_v2:3985408"/db_xref > "AFFY_U133_X3P:g8923715_3p_at"/db_xref "Codelink:GE82387"/db_xref > "Illumina_V1:GI_15147227-S"/db_xref "Illumina_V2:ILMN_23116"/db_xref > "OTTT:OTTHUMT00000058925"/db_xref > "shares_CDS_with_OTTT:BEX1-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058925"/translation > "MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYC > VPRGNRRRFRVRQPILQYRWDMMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLS > HSLRAVSTDPPHHDHHDEFCLMP"gene complement(395306..395427)/gene > ENSG00000221010/locus_tag "AL008708.4"misc_RNA > complement(395306..395427)/gene "ENSG00000221010"/db_xref > "Clone_based_ensembl_transcri:AL008708.4-201"/note "miRNA"/note > "transcript_id=ENST00000408083"gene complement(402265..419540)/gene > ENSG00000147206/locus_tag "NXF3"/note "Nuclear RNA export factor 3 > (TAP-like protein 3) > (TAPL-3). [Source:Uniprot/SWISSPROT;Acc:Q9H4D5]"mRNA > join(complement(419437..419535), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402682..402742), > complement(402265..402441))/gene "ENSG00000147206"/note > "transcript_id=ENST00000395065"CDS join(complement(419437..419464), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402731..402742))/gene > "ENSG00000147206"/protein_id "ENSP00000378504"/note > "transcript_id=ENST00000395065"/db_xref "CCDS:CCDS14503.1"/db_xref > "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref > "RefSeq_peptide:NP_071335.1"/db_xref "RefSeq_dna:NM_022052"/db_xref > "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref > "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref > "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref > "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref > "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref > "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003729"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0006810"/db_xref > "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref > "HGNC_curated_transcript:NXF3-001"/db_xref "IPI:IPI00004930.5"/db_xref > "IPI:IPI00552760.2"/db_xref "MIM_GENE:300316"/db_xref > "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref > "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref > "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref > "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref > "AFFY_HG_U133A:220110_s_at"/db_xref > "AFFY_HG_U133A_2:220110_s_at"/db_xref > "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref > "AFFY_HG_U95E:89668_at"/db_xref > "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref > "Illumina_V1:GI_11545756-S"/db_xref "Illumina_V2:ILMN_19573"/db_xref > "OTTT:OTTHUMT00000057684"/db_xref > "shares_CDS_with_OTTT:NXF3-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057684"/translation > "MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSS > SHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRME > GNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENA > SIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQ > EALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPG > EKCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGS > FFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCK > FFKDSRNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLC > FSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFT > LVPTAFSSSVPAFSQEQQKMLPS"mRNA join(complement(419437..419540), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402682..402742), > complement(402265..402441))/gene "ENSG00000147206"/note > "transcript_id=ENST00000372709"CDS join(complement(419437..419539), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402731..402742))/gene > "ENSG00000147206"/protein_id "ENSP00000361794"/note > "transcript_id=ENST00000372709"/db_xref "HGNC:NXF3"/db_xref > "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref > "RefSeq_peptide:NP_071335.1"/db_xref > "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref > "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref > "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref > "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref > "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref > "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003729"/db_xref "GO:GO:0003729"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0005737"/db_xref > "GO:GO:0006810"/db_xref "GO:GO:0016973"/db_xref > "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref > "HGNC_automatic_transcript:NXF3-201"/db_xref > "IPI:IPI00004930.5"/db_xref "IPI:IPI00552760.2"/db_xref > "IPI:IPI00872823.1"/db_xref "MIM_GENE:300316"/db_xref > "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref > "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref > "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref > "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref > "AFFY_HG_U133A:220110_s_at"/db_xref > "AFFY_HG_U133A_2:220110_s_at"/db_xref > "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref > "AFFY_HG_U95E:89668_at"/db_xref > "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref > "Illumina_V1:GI_11545756-S"/db_xref > "Illumina_V2:ILMN_19573"/translation > "LNLLQTPVPRPHRFSSREPYKDIGKMSLPSGHTTGHTDQVVQRR > ARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRK > GSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQN > ECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF > VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASL > DVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSILELFPKLLCL > DGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSA > YHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDIVDSLS > ALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSS > SLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS"gene > 413637..415717/gene ENSG00000217368/locus_tag > "LL0XNC01-221F2.2"misc_RNA 413637..415717/gene > "ENSG00000217368"/db_xref "RefSeq_dna_predicted:XR_037041"/db_xref > "RefSeq_dna_predicted:XR_037455"/db_xref > "RefSeq_dna_predicted:XR_039021"/db_xref > "Clone_based_vega_transcript:LL0XNC01-221F2.2- > 001"/db_xref "AFFY_HuEx_1_0_st_v2:3588353"/db_xref > "AFFY_HuEx_1_0_st_v2:4016361"/db_xref > "AFFY_HuEx_1_0_st_v2:4016362"/db_xref > "AFFY_HuEx_1_0_st_v2:4016363"/db_xref > "AFFY_U133_X3P:Hs.195728.0.A1_3p_at"/db_xref > "OTTT:OTTHUMT00000057692"/note "processed_pseudogene"/note > "transcript_id=ENST00000403064"gene complement(482560..482652)/gene > ENSG00000200662/locus_tag "AL035494.8"misc_RNA > complement(482560..482652)/gene "ENSG00000200662"/db_xref > "Clone_based_ensembl_transcri:AL035494.8-201"/db_xref > "RFAM:RF00019"/note "misc_RNA"/note > "transcript_id=ENST00000363792"gene complement(532453..533340)/gene > ENSG00000220705/locus_tag "RP4-635G19.1"misc_RNA > complement(532453..533340)/gene "ENSG00000220705"/db_xref > "Clone_based_vega_transcript:RP4-635G19.1-001"/db_xref > "AFFY_HuEx_1_0_st_v2:2670016"/db_xref > "AFFY_HuEx_1_0_st_v2:3985483"/db_xref > "AFFY_HuEx_1_0_st_v2:3985484"/db_xref > "AFFY_HuEx_1_0_st_v2:3985485"/db_xref "OTTT:OTTHUMT00000057693"/note > "processed_pseudogene"/note "transcript_id=ENST00000402296"gene > 541565..543636/gene ENSG00000102409/locus_tag "BEX4"/note "Protein > BEX4 (Brain-expressed X-linked protein 4) > (BEX1-like 1) (Nerve growth factor receptor-associated > protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NWD9]"mRNA > join(541565..541679,542590..543540)/gene "ENSG00000102409"/note > "transcript_id=ENST00000372691"CDS 542595..542957/gene > "ENSG00000102409"/protein_id "ENSP00000361776"/note > "transcript_id=ENST00000372691"/db_xref "HGNC:BEX4"/db_xref > "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref > "RefSeq_peptide:NP_001073894.1"/db_xref "EntrezGene:BEX4"/db_xref > "AgilentProbe:A_24_P40551"/db_xref "AgilentProbe:A_32_P156941"/db_xref > "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref > "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref > "HGNC_curated_transcript:BEX4-002"/db_xref "IPI:IPI00739732.1"/db_xref > "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref > "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref > "AFFY_HG_U133A:215440_s_at"/db_xref > "AFFY_HG_U133A_2:215440_s_at"/db_xref > "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref > "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016383"/db_xref > "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref > "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref > "Illumina_V2:ILMN_37437"/db_xref "OTTP:59442"/db_xref > "OTTP:OTTHUMP00000023729"/db_xref > "OTTT:OTTHUMT00000057695"/translation > "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ > KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY > MRFQTPEPDNHYDFCLIP"mRNA > join(541565..541679,542123..542205,542590..543636)/gene > "ENSG00000102409"/note "transcript_id=ENST00000372695"CDS > 542595..542957/gene "ENSG00000102409"/protein_id > "ENSP00000361780"/note "transcript_id=ENST00000372695"/db_xref > "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref > "RefSeq_peptide:NP_001073894.1"/db_xref > "RefSeq_dna:NM_001080425"/db_xref > "RefSeq_dna_predicted:XM_043653"/db_xref "EntrezGene:BEX4"/db_xref > "AgilentProbe:A_23_P114391"/db_xref "AgilentProbe:A_24_P40551"/db_xref > "AgilentProbe:A_32_P156941"/db_xref > "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref > "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref > "HGNC_curated_transcript:BEX4-001"/db_xref "IPI:IPI00739732.1"/db_xref > "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref > "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref > "AFFY_HG_U133A:215440_s_at"/db_xref > "AFFY_HG_U133A_2:215440_s_at"/db_xref > "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref > "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016383"/db_xref > "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref > "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref > "Illumina_V2:ILMN_37437"/db_xref "OTTT:OTTHUMT00000057694"/db_xref > "shares_CDS_with_OTTT:BEX4-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057694"/translation > "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ > KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY > MRFQTPEPDNHYDFCLIP"gene complement(579439..581634)/gene > ENSG00000180964/locus_tag "TCEAL8"/note "Transcription elongation > factor A protein-like 8 > (TCEA-like protein 8) (Transcription elongation factor S- > II protein-like 8). [Source:Uniprot/SWISSPROT;Acc:Q8IYN2]"mRNA > join(complement(581519..581634), > complement(579439..580458))/gene "ENSG00000180964"/note > "transcript_id=ENST00000360000"CDS complement(580067..580420)/gene > "ENSG00000180964"/protein_id "ENSP00000353093"/note > "transcript_id=ENST00000360000"/db_xref "HGNC:TCEAL8"/db_xref > "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref > "RefSeq_peptide:NP_001006685.1"/db_xref > "RefSeq_peptide:NP_699164.1"/db_xref "EntrezGene:TCEAL8"/db_xref > "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref > "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref > "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref > "HGNC_curated_transcript:TCEAL8-002"/db_xref > "IPI:IPI00217810.1"/db_xref "UniGene:Hs.612731"/db_xref > "protein_id:AAH35573.1"/db_xref "protein_id:CAI41979.1"/db_xref > "AFFY_HG_U133B:224819_at"/db_xref > "AFFY_HG_U133_Plus_2:224819_at"/db_xref > "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref > "AFFY_HuEx_1_0_st_v2:3985503"/db_xref > "AFFY_HuEx_1_0_st_v2:3985505"/db_xref > "AFFY_U133_X3P:224819_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref > "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref > "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057699"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057699"/db_xref > "shares_CDS_with_OTTT:TCEAL8-002"/translation > "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ > EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK > QRHSRSRPYPVCFRP"mRNA join(complement(581519..581634), > complement(581046..581118),complement(579439..580458))/gene > "ENSG00000180964"/note "transcript_id=ENST00000372685"CDS > complement(580067..580420)/gene "ENSG00000180964"/protein_id > "ENSP00000361770"/note "transcript_id=ENST00000372685"/db_xref > "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref > "RefSeq_peptide:NP_001006685.1"/db_xref > "RefSeq_peptide:NP_699164.1"/db_xref "RefSeq_dna:NM_001006684"/db_xref > "RefSeq_dna:NM_153333"/db_xref "EntrezGene:TCEAL8"/db_xref > "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref > "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref > "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref > "HGNC_curated_transcript:TCEAL8-001"/db_xref > "IPI:IPI00217810.1"/db_xref "protein_id:AAH35573.1"/db_xref > "protein_id:CAI41979.1"/db_xref "AFFY_HG_U133B:224819_at"/db_xref > "AFFY_HG_U133_Plus_2:224819_at"/db_xref > "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref > "AFFY_HuEx_1_0_st_v2:3985503"/db_xref > "AFFY_HuEx_1_0_st_v2:3985504"/db_xref > "AFFY_HuEx_1_0_st_v2:3985505"/db_xref > "AFFY_U133_X3P:224819_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref > "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref > "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057698"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057698"/db_xref > "shares_CDS_with_OTTT:TCEAL8-001"/translation > "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ > EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK > QRHSRSRPYPVCFRP"mRNA join(complement(580331..580420), > complement(580100..580231))/gene "ENSG00000180964"/note > "transcript_id=ENST00000372681"CDS join(complement(580331..580420), > complement(580100..580231))/gene "ENSG00000180964"/protein_id > "ENSP00000361766"/note "transcript_id=ENST00000372681"/db_xref > "Uniprot/SPTREMBL:Q5H9L1_HUMAN"/db_xref "EMBL:Z68694"/db_xref > "GO:GO:0003746"/db_xref "HGNC_automatic_transcript:TCEAL8-201"/db_xref > "IPI:IPI00640443.1"/db_xref "protein_id:CAI41978.1"/db_xref > "AFFY_HuEx_1_0_st_v2:3985503"/db_xref > "AFFY_HuEx_1_0_st_v2:3985504"/translation > "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEDTPVRHLDPEEMIR > GVDELERLREEIRRVRNKFVMMHWKQRHSR"gene complement(585013..586022)/gene > ENSG00000219002/locus_tag "LL0XNC01-177E8.2"misc_RNA > join(complement(585929..586022), > complement(585013..585759))/gene "ENSG00000219002"/db_xref > "Clone_based_vega_transcript:LL0XNC01-177E8.2- > 001"/db_xref "OTTT:OTTHUMT00000057697"/note > "processed_pseudogene"/note "transcript_id=ENST00000406148"gene > complement(600132..603313)/gene ENSG00000204065/locus_tag > "TCEAL5"/note "Transcription elongation factor A protein-like 5 > (TCEA-like protein 5) (Transcription elongation factor S- > II protein-like 5). [Source:Uniprot/SWISSPROT;Acc:Q5H9L2]"mRNA > join(complement(603114..603313), > complement(601716..601783),complement(600132..601031))/gene > "ENSG00000204065"/note "transcript_id=ENST00000372680"CDS > complement(600384..601004)/gene "ENSG00000204065"/protein_id > "ENSP00000361765"/note "transcript_id=ENST00000372680"/db_xref > "HGNC:TCEAL5"/db_xref "CCDS:CCDS35356.1"/db_xref > "Uniprot/SWISSPROT:TCAL5_HUMAN"/db_xref > "RefSeq_peptide:NP_001012997.1"/db_xref > "RefSeq_dna:NM_001012979"/db_xref > "Uniprot/SPTREMBL:A2RUJ4_HUMAN"/db_xref "EntrezGene:TCEAL5"/db_xref > "AgilentProbe:A_23_P62399"/db_xref "AgilentProbe:A_32_P18470"/db_xref > "EMBL:BC132922"/db_xref "EMBL:BC132924"/db_xref > "EMBL:CH471190"/db_xref "EMBL:Z68694"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL5-001"/db_xref > "IPI:IPI00257932.1"/db_xref "UniGene:Hs.403462"/db_xref > "protein_id:AAI32923.1"/db_xref "protein_id:AAI32925.1"/db_xref > "protein_id:CAI41976.1"/db_xref "protein_id:EAW54717.1"/db_xref > "AFFY_HG_U95E:87383_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "Codelink:GE876309"/db_xref > "Illumina_V1:GI_29744085-S"/db_xref "Illumina_V2:ILMN_10460"/db_xref > "OTTP:59448"/db_xref "OTTP:OTTHUMP00000023730"/db_xref > "OTTT:OTTHUMT00000057696"/db_xref > "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057696"/db_xref > "shares_CDS_and_UTR_with_OTTT:TCEAL5-001"/translation > "MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDM > EGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRA > AEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELR > KKQKMGGFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV"gene > complement(635795..637458)/gene ENSG00000133134/locus_tag > "BEX2"/note "Protein BEX2 (Brain-expressed X-linked protein 2) > (hBex2). [Source:Uniprot/SWISSPROT;Acc:Q9BXY8]"mRNA > join(complement(637301..637458), > complement(636799..636874),complement(635795..636422))/gene > "ENSG00000133134"/note "transcript_id=ENST00000372677"CDS > complement(636031..636417)/gene "ENSG00000133134"/protein_id > "ENSP00000361762"/note "transcript_id=ENST00000372677"/db_xref > "HGNC:BEX2"/db_xref "CCDS:CCDS14505.1"/db_xref > "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref > "RefSeq_peptide:NP_116010.1"/db_xref "RefSeq_dna:NM_032621"/db_xref > "EntrezGene:BEX2"/db_xref "AgilentProbe:A_23_P22735"/db_xref > "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref > "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref > "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-002"/db_xref > "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref > "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref > "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref > "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref > "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref > "AFFY_HG_U133_Plus_2:224367_at"/db_xref > "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref > "AFFY_HuEx_1_0_st_v2:3985510"/db_xref > "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref > "Illumina_V1:hmm18828-S"/db_xref "Illumina_V1:hmm36653-S"/db_xref > "OTTT:OTTHUMT00000057702"/db_xref > "shares_CDS_with_OTTT:BEX2-002"/db_xref > "shares_CDS_with_OTTT:BEX2-003"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057702"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057703"/translation > "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS > EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK > QLSHSLRAVSTDPPHHDHHDEFCLMP"mRNA join(complement(637337..637448), > complement(636799..636874),complement(635943..636422))/gene > "ENSG00000133134"/note "transcript_id=ENST00000372674"CDS > complement(636031..636417)/gene "ENSG00000133134"/protein_id > "ENSP00000361759"/note "transcript_id=ENST00000372674"/db_xref > "CCDS:CCDS14505.1"/db_xref "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref > "RefSeq_peptide:NP_116010.1"/db_xref "EntrezGene:BEX2"/db_xref > "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref > "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref > "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-003"/db_xref > "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref > "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref > "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref > "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref > "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref > "AFFY_HG_U133_Plus_2:224367_at"/db_xref > "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref > "AFFY_HuEx_1_0_st_v2:3985510"/db_xref > "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref > "Illumina_V1:hmm18828-S"/db_xref "OTTP:59451"/db_xref > "OTTP:OTTHUMP00000023736"/db_xref "OTTT:OTTHUMT00000057703"/db_xref > "shares_CDS_with_ENST:ENST00000372677"/translation > "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS > EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK > QLSHSLRAVSTDPPHHDHHDEFCLMP"gene 656670..658766/gene > ENSG00000182916/locus_tag "TCEAL7"/note "Transcription elongation > factor A protein-like 7 > (TCEA-like protein 7) (Transcription elongation factor S- > II protein-like 7). [Source:Uniprot/SWISSPROT;Acc:Q9BRU2]"mRNA > join(656670..656745,657418..657481,657818..658529)/gene > "ENSG00000182916"/note "transcript_id=ENST00000372666"CDS > 657845..658147/gene "ENSG00000182916"/protein_id > "ENSP00000361751"/note "transcript_id=ENST00000372666"/db_xref > "HGNC:TCEAL7"/db_xref "CCDS:CCDS14506.1"/db_xref > "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref > "RefSeq_peptide:NP_689491.1"/db_xref "RefSeq_dna:NM_152278"/db_xref > "EntrezGene:TCEAL7"/db_xref "AgilentCGH:A_14_P111438"/db_xref > "AgilentProbe:A_23_P125788"/db_xref "AgilentProbe:A_24_P49106"/db_xref > "EMBL:BC005988"/db_xref "EMBL:BC016786"/db_xref > "EMBL:Z92846"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref > "HGNC_curated_transcript:TCEAL7-002"/db_xref > "IPI:IPI00059712.1"/db_xref "protein_id:AAH05988.2"/db_xref > "protein_id:AAH16786.1"/db_xref "protein_id:CAI41965.1"/db_xref > "AFFY_HG_U133B:227705_at"/db_xref > "AFFY_HG_U133_Plus_2:227705_at"/db_xref > "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016444"/db_xref > "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref > "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref > "Illumina_V2:ILMN_13373"/db_xref "OTTP:59455"/db_xref > "OTTP:OTTHUMP00000023738"/db_xref "OTTT:OTTHUMT00000057705"/db_xref > "shares_CDS_with_ENST:ENST00000332431"/translation > "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS > LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"mRNA > join(656678..656745,657364..657481,657818..658766)/gene > "ENSG00000182916"/note "transcript_id=ENST00000332431"CDS > 657845..658147/gene "ENSG00000182916"/protein_id > "ENSP00000329794"/note "transcript_id=ENST00000332431"/db_xref > "CCDS:CCDS14506.1"/db_xref "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref > "RefSeq_peptide:NP_689491.1"/db_xref "EntrezGene:TCEAL7"/db_xref > "AgilentCGH:A_14_P111438"/db_xref "AgilentProbe:A_23_P125788"/db_xref > "AgilentProbe:A_24_P49106"/db_xref "EMBL:BC005988"/db_xref > "EMBL:BC016786"/db_xref "EMBL:Z92846"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL7-001"/db_xref > "IPI:IPI00059712.1"/db_xref "UniGene:Hs.602651"/db_xref > "protein_id:AAH05988.2"/db_xref "protein_id:AAH16786.1"/db_xref > "protein_id:CAI41965.1"/db_xref "AFFY_HG_U133B:227705_at"/db_xref > "AFFY_HG_U133_Plus_2:227705_at"/db_xref > "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016446"/db_xref > "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref > "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref > "Illumina_V2:ILMN_13373"/db_xref "OTTT:OTTHUMT00000057704"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057704"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057705"/db_xref > "shares_CDS_with_OTTT:TCEAL7-001"/db_xref > "shares_CDS_with_OTTT:TCEAL7-002"/translation > "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS > LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"gene > complement(673903..674170)/gene ENSG00000215026/locus_tag > "LL0XNC01-105G4.3"misc_RNA complement(673903..674170)/gene > "ENSG00000215026"/db_xref "Clone_based_vega_transcript:LL0XNC01-105G4.3- > 001"/db_xref "OTTT:OTTHUMT00000057708"/note > "processed_pseudogene"/note "transcript_id=ENST00000399456"gene > 682893..684892/gene ENSG00000185222/locus_tag "WBP5"/note "WW > domain-binding protein 5 (WBP-5). > [Source:Uniprot/SWISSPROT;Acc:Q9UHQ7]"mRNA > join(682893..683047,684056..684892)/gene "ENSG00000185222"/note > "transcript_id=ENST00000372656"CDS 684126..684440/gene > "ENSG00000185222"/protein_id "ENSP00000361740"/note > "transcript_id=ENST00000372656"/db_xref "HGNC:WBP5"/db_xref > "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref > "RefSeq_peptide:NP_001006613.1"/db_xref > "RefSeq_peptide:NP_001006614.1"/db_xref > "RefSeq_peptide:NP_001006615.1"/db_xref > "RefSeq_peptide:NP_057387.1"/db_xref "EntrezGene:WBP5"/db_xref > "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref > "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref > "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref > "HGNC_curated_transcript:WBP5-002"/db_xref "IPI:IPI00008434.1"/db_xref > "protein_id:AAF17229.1"/db_xref "protein_id:AAH23544.1"/db_xref > "protein_id:CAD12327.1"/db_xref "AFFY_HG_Focus:217975_at"/db_xref > "AFFY_HG_U133A:217975_at"/db_xref "AFFY_HG_U133A_2:217975_at"/db_xref > "AFFY_HG_U133_Plus_2:217975_at"/db_xref > "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016456"/db_xref > "AFFY_HuEx_1_0_st_v2:4016458"/db_xref > "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref > "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref > "OTTT:OTTHUMT00000057707"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057707"/db_xref > "shares_CDS_with_OTTT:WBP5-002"/translation > "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT > FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY > LM"mRNA join(682893..683047,683524..683602,684056..684892)/gene > "ENSG00000185222"/note "transcript_id=ENST00000372661"CDS > 684126..684440/gene "ENSG00000185222"/protein_id > "ENSP00000361745"/note "transcript_id=ENST00000372661"/db_xref > "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref > "RefSeq_peptide:NP_001006613.1"/db_xref > "RefSeq_peptide:NP_001006614.1"/db_xref > "RefSeq_peptide:NP_001006615.1"/db_xref > "RefSeq_peptide:NP_057387.1"/db_xref "RefSeq_dna:NM_001006612"/db_xref > "RefSeq_dna:NM_001006613"/db_xref "RefSeq_dna:NM_001006614"/db_xref > "RefSeq_dna:NM_016303"/db_xref "EntrezGene:WBP5"/db_xref > "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref > "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref > "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref > "GO:GO:0050699"/db_xref "HGNC_curated_transcript:WBP5-001"/db_xref > "IPI:IPI00008434.1"/db_xref "protein_id:AAF17229.1"/db_xref > "protein_id:AAH23544.1"/db_xref "protein_id:CAD12327.1"/db_xref > "AFFY_HG_Focus:217975_at"/db_xref "AFFY_HG_U133A:217975_at"/db_xref > "AFFY_HG_U133A_2:217975_at"/db_xref > "AFFY_HG_U133_Plus_2:217975_at"/db_xref > "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016456"/db_xref > "AFFY_HuEx_1_0_st_v2:4016458"/db_xref > "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref > "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref > "OTTT:OTTHUMT00000057706"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057706"/db_xref > "shares_CDS_with_OTTT:WBP5-001"/translation > "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT > FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY > LM"gene 702767..704518/gene ENSG00000166681/locus_tag > "NGFRAP1"/note "Protein BEX3 (Brain-expressed X-linked protein 3) > (p75NTR-associated cell death executor) (Nerve growth > factor receptor-associated protein 1) (Ovarian granulosa > cell 13.0 kDa protein HGR74). > [Source:Uniprot/SWISSPROT;Acc:Q00994]"mRNA > join(702767..703054,703469..703547,703904..704509)/gene > "ENSG00000166681"/note "transcript_id=ENST00000299872"CDS > 703963..704268/gene "ENSG00000166681"/protein_id > "ENSP00000299872"/note "transcript_id=ENST00000299872"/db_xref > "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref > "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref > "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref > "HGNC_automatic_transcript:NGFRAP1-201"/db_xref > "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "shares_CDS_with_OTTT:NGFRAP1-002"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057710"/translation > "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR > QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA > join(702767..703054,703469..703547,703904..704509)/gene > "ENSG00000166681"/note "transcript_id=ENST00000372645"CDS > 703933..704268/gene "ENSG00000166681"/protein_id > "ENSP00000361728"/note "transcript_id=ENST00000372645"/db_xref > "HGNC:NGFRAP1"/db_xref "CCDS:CCDS14508.1"/db_xref > "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref > "RefSeq_peptide:NP_055195.1"/db_xref > "RefSeq_peptide:NP_996798.1"/db_xref > "RefSeq_peptide:NP_996800.1"/db_xref "RefSeq_dna:NM_014380"/db_xref > "RefSeq_dna:NM_206915"/db_xref "EntrezGene:NGFRAP1"/db_xref > "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref > "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref > "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref > "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref > "GO:GO:0005123"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref > "GO:GO:0005829"/db_xref "GO:GO:0006915"/db_xref > "GO:GO:0006917"/db_xref "GO:GO:0007275"/db_xref > "GO:GO:0008625"/db_xref "GO:GO:0046872"/db_xref > "HGNC_curated_transcript:NGFRAP1-001"/db_xref > "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref > "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref > "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref > "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref > "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref > "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTT:OTTHUMT00000057709"/db_xref > "shares_CDS_with_OTTT:NGFRAP1-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057709"/translation > "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA > PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD > HHDEFCLMP"mRNA join(702781..703054,703469..703547,703951..704518)/gene > "ENSG00000166681"/note "transcript_id=ENST00000361298"CDS > 703963..704268/gene "ENSG00000166681"/protein_id > "ENSP00000354843"/note "transcript_id=ENST00000361298"/db_xref > "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref > "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref > "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref > "HGNC_curated_transcript:NGFRAP1-002"/db_xref > "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTP:59460"/db_xref "OTTP:OTTHUMP00000023742"/db_xref > "OTTT:OTTHUMT00000057710"/db_xref > "shares_CDS_with_ENST:ENST00000299872"/translation > "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR > QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA > join(702848..703054,703904..704501)/gene "ENSG00000166681"/note > "transcript_id=ENST00000372635"CDS 703933..704268/gene > "ENSG00000166681"/protein_id "ENSP00000361718"/note > "transcript_id=ENST00000372635"/db_xref "CCDS:CCDS14508.1"/db_xref > "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref > "RefSeq_peptide:NP_055195.1"/db_xref > "RefSeq_peptide:NP_996798.1"/db_xref > "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref > "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref > "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref > "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref > "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0006915"/db_xref > "GO:GO:0007275"/db_xref "GO:GO:0046872"/db_xref > "HGNC_curated_transcript:NGFRAP1-003"/db_xref > "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref > "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref > "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref > "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref > "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref > "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTP:59461"/db_xref "OTTP:OTTHUMP00000023743"/db_xref > "OTTT:OTTHUMT00000057711"/translation > "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA > PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD > HHDEFCLMP"mRNA join(703357..703547,703951..704512)/gene > "ENSG00000166681"/note "transcript_id=ENST00000372634"CDS > 703963..704268/gene "ENSG00000166681"/protein_id > "ENSP00000361717"/note "transcript_id=ENST00000372634"/db_xref > "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref > "RefSeq_dna:NM_206917"/db_xref "EntrezGene:NGFRAP1"/db_xref > "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref > "AgilentProbe:A_32_P27879"/db_xref > "HGNC_curated_transcript:NGFRAP1-004"/db_xref > "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTP:59462"/db_xref "OTTP:OTTHUMP00000023744"/db_xref > "OTTT:OTTHUMT00000057712"/translation > "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR > QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"gene > complement(826191..845930)/gene ENSG00000172476/locus_tag > "RAB40A"/note "Ras-related protein Rab-40A (SOCS box-containing > protein RAR2A) (Protein Rar-2). > [Source:Uniprot/SWISSPROT;Acc:Q8WXH6]"mRNA > complement(826191..829316)/gene "ENSG00000172476"/note > "transcript_id=ENST00000372633"CDS complement(826364..827197)/gene > "ENSG00000172476"/protein_id "ENSP00000361716"/note > "transcript_id=ENST00000372633"/db_xref "HGNC:RAB40A"/db_xref > "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref > "RefSeq_peptide:NP_543155.2"/db_xref "RefSeq_dna:NM_080879"/db_xref > "EntrezGene:RAB40A"/db_xref "AgilentCGH:A_14_P129520"/db_xref > "AgilentProbe:A_23_P259912"/db_xref > "AgilentProbe:A_32_P464296"/db_xref "AgilentProbe:A_32_P88719"/db_xref > "EMBL:AB232637"/db_xref "EMBL:AF132748"/db_xref > "EMBL:AF422143"/db_xref "EMBL:BC074854"/db_xref > "EMBL:BC074855"/db_xref "EMBL:BC113501"/db_xref > "EMBL:BC117232"/db_xref "EMBL:Z69733"/db_xref > "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref > "GO:GO:0005622"/db_xref "GO:GO:0005886"/db_xref > "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref > "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref > "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref > "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40A-002"/db_xref > "IPI:IPI00514509.4"/db_xref "UniGene:Hs.27453"/db_xref > "protein_id:AAH74854.1"/db_xref "protein_id:AAH74855.1"/db_xref > "protein_id:AAI13502.1"/db_xref "protein_id:AAI17233.1"/db_xref > "protein_id:AAL60514.1"/db_xref "protein_id:AAL75949.1"/db_xref > "protein_id:BAF02899.1"/db_xref "protein_id:CAI41993.1"/db_xref > "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref > "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A:217589_at"/db_xref > "AFFY_HG_U133A_2:215782_at"/db_xref > "AFFY_HG_U133A_2:217589_at"/db_xref > "AFFY_HG_U133_Plus_2:215782_at"/db_xref > "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref > "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref > "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref > "AFFY_HG_U95Av2:33477_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3985603"/db_xref > "AFFY_HuEx_1_0_st_v2:3985604"/db_xref > "AFFY_HuEx_1_0_st_v2:3985605"/db_xref > "AFFY_HuEx_1_0_st_v2:3985606"/db_xref > "AFFY_HuEx_1_0_st_v2:3985608"/db_xref > "AFFY_HuEx_1_0_st_v2:4016299"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref > "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref > "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V1:Hs.496523-S"/db_xref > "Illumina_V2:ILMN_123867"/db_xref "Illumina_V2:ILMN_20197"/db_xref > "OTTP:59465"/db_xref "OTTP:OTTHUMP00000023746"/db_xref > "OTTT:OTTHUMT00000057714"/translation > "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS > HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF > EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN > FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL > RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI > S"mRNA join(complement(845811..845930), > complement(843815..843966),complement(826195..827267))/gene > "ENSG00000172476"/note "transcript_id=ENST00000304236"CDS > complement(826364..827197)/gene "ENSG00000172476"/protein_id > "ENSP00000305648"/note "transcript_id=ENST00000304236"/db_xref > "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref > "RefSeq_peptide:NP_543155.2"/db_xref "EntrezGene:RAB40A"/db_xref > "AgilentCGH:A_14_P129520"/db_xref "AgilentProbe:A_23_P259912"/db_xref > "AgilentProbe:A_32_P88719"/db_xref "EMBL:AB232637"/db_xref > "EMBL:AF132748"/db_xref "EMBL:AF422143"/db_xref > "EMBL:BC074854"/db_xref "EMBL:BC074855"/db_xref > "EMBL:BC113501"/db_xref "EMBL:BC117232"/db_xref > "EMBL:Z69733"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref > "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref > "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref > "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref > "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref > "HGNC_curated_transcript:RAB40A-001"/db_xref > "IPI:IPI00514509.4"/db_xref "protein_id:AAH74854.1"/db_xref > "protein_id:AAH74855.1"/db_xref "protein_id:AAI13502.1"/db_xref > "protein_id:AAI17233.1"/db_xref "protein_id:AAL60514.1"/db_xref > "protein_id:AAL75949.1"/db_xref "protein_id:BAF02899.1"/db_xref > "protein_id:CAI41993.1"/db_xref "AFFY_HC_G110:107_at"/db_xref > "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref > "AFFY_HG_U133A:217589_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref > "AFFY_HG_U133A_2:217589_at"/db_xref > "AFFY_HG_U133_Plus_2:215782_at"/db_xref > "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref > "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref > "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref > "AFFY_HG_U95Av2:33477_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3985603"/db_xref > "AFFY_HuEx_1_0_st_v2:3985604"/db_xref > "AFFY_HuEx_1_0_st_v2:3985605"/db_xref > "AFFY_HuEx_1_0_st_v2:4016299"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref > "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref > "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V2:ILMN_20197"/db_xref > "OTTP:59464"/db_xref "OTTP:OTTHUMP00000023745"/db_xref > "OTTT:OTTHUMT00000057713"/db_xref > "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057713"/db_xref > "shares_CDS_and_UTR_with_OTTT:RAB40A-001"/translation > "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS > HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF > EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN > FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL > RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI > S"gene 902911..914166/gene ENSG00000133142/locus_tag "TCEAL4"/note > "Transcription elongation factor A protein-like 4 > (TCEA-like protein 4) (Transcription elongation factor S- > II protein-like 4). [Source:Uniprot/SWISSPROT;Acc:Q96EI5]"mRNA > join(902911..902973,903535..903654,912066..912201, > 912660..912742,913090..913956)/gene "ENSG00000133142"/note > "transcript_id=ENST00000372629"CDS > join(902911..902973,903535..903654,912066..912201, > 912660..912742,913090..913764)/gene > "ENSG00000133142"/protein_id "ENSP00000361712"/note > "transcript_id=ENST00000372629"/db_xref "HGNC:TCEAL4"/db_xref > "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref > "RefSeq_peptide:NP_001006936.1"/db_xref > "RefSeq_peptide:NP_001006937.1"/db_xref > "RefSeq_peptide:NP_001006938.1"/db_xref > "RefSeq_peptide:NP_079139.4"/db_xref > "Uniprot/Varsplic:Q96EI5-2"/db_xref "EntrezGene:TCEAL4"/db_xref > "AgilentCGH:A_14_P118508"/db_xref "AgilentCGH:A_14_P128392"/db_xref > "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref > "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref > "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL4-001"/db_xref > "IPI:IPI00647163.1"/db_xref "IPI:IPI00657999.3"/db_xref > "protein_id:AAG44794.1"/db_xref "protein_id:AAH12296.1"/db_xref > "protein_id:AAL40909.1"/db_xref "protein_id:BAB15023.1"/db_xref > "protein_id:CAI42031.1"/db_xref "AFFY_HG_U133A:202371_at"/db_xref > "AFFY_HG_U133A_2:202371_at"/db_xref > "AFFY_HG_U133_Plus_2:202371_at"/db_xref > "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016542"/db_xref > "AFFY_HuEx_1_0_st_v2:4016545"/db_xref > "AFFY_HuEx_1_0_st_v2:4016547"/db_xref > "AFFY_HuEx_1_0_st_v2:4016548"/db_xref > "AFFY_HuEx_1_0_st_v2:4016549"/db_xref > "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref > "Illumina_V1:GI_21361595-S"/db_xref "Illumina_V2:ILMN_15986"/db_xref > "Illumina_V2:ILMN_1896"/db_xref "OTTT:OTTHUMT00000252336"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000252336"/db_xref > "shares_CDS_with_OTTT:TCEAL4-001"/translation > "MPAGGQAPQLTPVIPAFWEARGLPNSKGRDKVHICQCEEWKGHI > SYVERDITTSEIKSLPQVSVRAFHAASGTLEWRKGNGYGRGKGWGWGRVESREAGPSV > DRDGGLRVCCSQRSAKPEKEEQPVQNPRRSVKDRKRRGNLDMEKLYSENEGMASNQGK > MENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGK > SEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKG > LAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFY > PRGPREFRGGCRAPRRDIEDIPYV"mRNA > join(911932..912065,912660..912732,913090..914166)/gene > "ENSG00000133142"/note "transcript_id=ENST00000395036"CDS > 913117..913764/gene "ENSG00000133142"/protein_id > "ENSP00000378477"/note "transcript_id=ENST00000395036"/db_xref > "CCDS:CCDS14510.2"/db_xref "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref > "RefSeq_peptide:NP_001006936.1"/db_xref > "RefSeq_peptide:NP_001006937.1"/db_xref > "RefSeq_peptide:NP_001006938.1"/db_xref > "RefSeq_peptide:NP_079139.4"/db_xref "RefSeq_dna:NM_001006935"/db_xref > "RefSeq_dna:NM_001006937"/db_xref "RefSeq_dna:NM_024863"/db_xref > "EntrezGene:TCEAL4"/db_xref "AgilentCGH:A_14_P128392"/db_xref > "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref > "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref > "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL4-201"/db_xref > "IPI:IPI00657999.3"/db_xref "protein_id:AAG44794.1"/db_xref > "protein_id:AAH12296.1"/db_xref "protein_id:AAL40909.1"/db_xref > "protein_id:BAB15023.1"/db_xref "protein_id:CAI42031.1"/db_xref > "AFFY_HG_U133A:202371_at"/db_xref "AFFY_HG_U133A_2:202371_at"/db_xref > "AFFY_HG_U133_Plus_2:202371_at"/db_xref > "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016538"/db_xref > "AFFY_HuEx_1_0_st_v2:4016540"/db_xref > "AFFY_HuEx_1_0_st_v2:4016541"/db_xref > "AFFY_HuEx_1_0_st_v2:4016545"/db_xref > "AFFY_HuEx_1_0_st_v2:4016547"/db_xref > "AFFY_HuEx_1_0_st_v2:4016548"/db_xref > "AFFY_HuEx_1_0_st_v2:4016549"/db_xref > "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref > "Illumina_V1:GI_21361595-S"/db_xref > "Illumina_V2:ILMN_1896"/translation > "MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENE > GKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPES > EGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFD > NMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV"gene > 933892..936368/gene ENSG00000196507/locus_tag "TCEAL3"/note > "Transcription elongation factor A protein-like 3 > (TCEA-like protein 3) (Transcription elongation factor S- > II protein-like 3). [Source:Uniprot/SWISSPROT;Acc:Q969E4]"mRNA > join(933892..934157,935045..935114,935484..936368)/gene > "ENSG00000196507"/note "transcript_id=ENST00000372628"CDS > 935506..936108/gene "ENSG00000196507"/protein_id > "ENSP00000361711"/note "transcript_id=ENST00000372628"/db_xref > "HGNC:TCEAL3"/db_xref "CCDS:CCDS14511.1"/db_xref > "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref > "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref > "RefSeq_peptide:NP_001006934.1"/db_xref > "RefSeq_peptide:NP_116315.1"/db_xref "RefSeq_dna:NM_001006933"/db_xref > "RefSeq_dna:NM_032926"/db_xref > "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref > "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref > "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref > "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref > "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-002"/db_xref > "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref > "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref > "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref > "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref > "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref > "AFFY_HG_U133B:227279_at"/db_xref > "AFFY_HG_U133_Plus_2:227279_at"/db_xref > "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref > "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref > "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref > "OTTP:59471"/db_xref "OTTP:OTTHUMP00000023758"/db_xref > "OTTT:OTTHUMT00000057737"/db_xref > "shares_CDS_with_ENST:ENST00000243286"/db_xref > "shares_CDS_with_ENST:ENST00000372627"/translation > "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC > EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA > EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG > GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA > join(934347..934511,935045..935114,935479..936367)/gene > "ENSG00000196507"/note "transcript_id=ENST00000243286"CDS > 935506..936108/gene "ENSG00000196507"/protein_id > "ENSP00000243286"/note "transcript_id=ENST00000243286"/db_xref > "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref > "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref > "RefSeq_peptide:NP_001006934.1"/db_xref > "RefSeq_peptide:NP_116315.1"/db_xref > "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref > "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref > "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref > "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref > "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL3-201"/db_xref > "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref > "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref > "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref > "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref > "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref > "AFFY_HG_U133B:227279_at"/db_xref > "AFFY_HG_U133_Plus_2:227279_at"/db_xref > "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref > "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref > "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref > "shares_CDS_with_OTTT:TCEAL3-001"/db_xref > "shares_CDS_with_OTTT:TCEAL3-002"/translation > "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC > EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA > EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG > GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA > join(934406..934499,935045..935114,935479..936367)/gene > "ENSG00000196507"/note "transcript_id=ENST00000372627"CDS > 935506..936108/gene "ENSG00000196507"/protein_id > "ENSP00000361710"/note "transcript_id=ENST00000372627"/db_xref > "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref > "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref > "RefSeq_peptide:NP_001006934.1"/db_xref > "RefSeq_peptide:NP_116315.1"/db_xref > "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref > "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref > "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref > "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref > "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-001"/db_xref > "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref > "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref > "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref > "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref > "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref > "AFFY_HG_U133B:227279_at"/db_xref > "AFFY_HG_U133_Plus_2:227279_at"/db_xref > "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref > "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref > "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref > "OTTT:OTTHUMT00000057736"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref > "shares_CDS_with_OTTT:TCEAL3-001"/db_xref > "shares_CDS_with_OTTT:TCEAL3-002"/translation > "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC > EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA > EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG > GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"gene 955161..957387/gene > ENSG00000172465/locus_tag "TCEAL1"/note "transcription elongation > factor A (SII)-like 1 > [Source:RefSeq_peptide;Acc:NP_001006641]"mRNA > join(955161..955234,955935..956002,956326..957387)/gene > "ENSG00000172465"/note "transcript_id=ENST00000372626"CDS > 956358..956837/gene "ENSG00000172465"/protein_id > "ENSP00000361709"/note "transcript_id=ENST00000372626"/db_xref > "HGNC:TCEAL1"/db_xref "CCDS:CCDS35358.1"/db_xref > "RefSeq_peptide:NP_001006640.1"/db_xref > "RefSeq_peptide:NP_001006641.1"/db_xref > "RefSeq_peptide:NP_004771.2"/db_xref "RefSeq_dna:NM_001006639"/db_xref > "RefSeq_dna:NM_001006640"/db_xref "RefSeq_dna:NM_004780"/db_xref > "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref > "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref > "AgilentProbe:A_32_P498070"/db_xref "GO:GO:0005515"/db_xref > "HGNC_curated_transcript:TCEAL1-001"/db_xref > "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref > "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref > "AFFY_HG_U133A_2:204045_at"/db_xref > "AFFY_HG_U133_Plus_2:204045_at"/db_xref > "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016567"/db_xref > "AFFY_HuEx_1_0_st_v2:4016569"/db_xref > "AFFY_HuGeneFL:M99701_at"/db_xref > "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref > "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref > "Illumina_V2:ILMN_23088"/db_xref "Illumina_V2:ILMN_28868"/db_xref > "OTTT:OTTHUMT00000058903"/db_xref "OTTT:OTTHUMT00000058904"/db_xref > "OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:TCEAL1-001"/db_xref > "shares_CDS_with_OTTT:TCEAL1-002"/db_xref > "shares_CDS_with_OTTT:TCEAL1-003"/translation > "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS > EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF > KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA > join(955405..955466,955935..956002,956326..957387)/gene > "ENSG00000172465"/note "transcript_id=ENST00000372624"CDS > 956358..956837/gene "ENSG00000172465"/protein_id > "ENSP00000361707"/note "transcript_id=ENST00000372624"/db_xref > "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref > "RefSeq_peptide:NP_001006641.1"/db_xref > "RefSeq_peptide:NP_004771.2"/db_xref > "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref > "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref > "AgilentProbe:A_32_P498070"/db_xref > "HGNC_automatic_transcript:TCEAL1-201"/db_xref > "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref > "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref > "AFFY_HG_U133A_2:204045_at"/db_xref > "AFFY_HG_U133_Plus_2:204045_at"/db_xref > "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016567"/db_xref > "AFFY_HuEx_1_0_st_v2:4016569"/db_xref > "AFFY_HuGeneFL:M99701_at"/db_xref > "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref > "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref > "Illumina_V2:ILMN_23088"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:TCEAL1-001"/db_xref > "shares_CDS_with_OTTT:TCEAL1-002"/db_xref > "shares_CDS_with_OTTT:TCEAL1-003"/translation > "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS > EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF > KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA > join(955405..955466,955935..956014,956326..957387)/gene > "ENSG00000172465"/note "transcript_id=ENST00000372625"CDS > 956358..956837/gene "ENSG00000172465"/protein_id > "ENSP00000361708"/note "transcript_id=ENST00000372625"/db_xref > "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref > "RefSeq_peptide:NP_001006641.1"/db_xref > "RefSeq_peptide:NP_004771.2"/db_xref > "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref > "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref > "HGNC_automatic_transcript:TCEAL1-202"/db_xref > "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref > "UniGene:Hs.95243"/db_xref "AFFY_HG_Focus:204045_at"/db_xref > "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref > "AFFY_HG_U133_Plus_2:204045_at"/db_xref > "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016567"/db_xref > "AFFY_HuEx_1_0_st_v2:4016569"/db_xref > "AFFY_HuGeneFL:M99701_at"/db_xref > "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref > "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref > "Illumina_V2:ILMN_23088"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:TCEAL1-001"/db_xref > "shares_CDS_with_OTTT:TCEAL1-002"/db_xref > "shares_CDS_with_OTTT:TCEAL1-003"/translation > "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS > EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF > KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"gene > complement(978174..978547)/gene ENSG00000180284/locus_tag > "AL049610.9"misc_RNA join(complement(978422..978547), > complement(978174..978419))/gene "ENSG00000180284"/db_xref > "AgilentProbe:A_24_P349428"/db_xref > "Clone_based_ensembl_transcri:AL049610.9-201"/db_xref > "UniGene:Hs.712229"/note "pseudogene"/note > "transcript_id=ENST00000312731"exon complement(5148..5254)/note > "exon_id=ENSE00001396941"exon 32225..32681/note > "exon_id=ENSE00001553787"exon 40223..40290/note > "exon_id=ENSE00001318862"exon 39571..39658/note > "exon_id=ENSE00001520517"exon 38853..38993/note > "exon_id=ENSE00001520520"exon 40978..44173/note > "exon_id=ENSE00001435544"exon 40630..40707/note > "exon_id=ENSE00001296863"exon 38617..38993/note > "exon_id=ENSE00001322878"exon 74258..74352/note > "exon_id=ENSE00001458492"exon 47398..47532/note > "exon_id=ENSE00001359890"exon 75140..79981/note > "exon_id=ENSE00001458491"exon 72535..72615/note > "exon_id=ENSE00001038238"exon 74026..74137/note > "exon_id=ENSE00001458493"exon 47167..47262/note > "exon_id=ENSE00001359898"exon 75140..78879/note > "exon_id=ENSE00001458499"exon 99642..99712/note > "exon_id=ENSE00001501273"exon 112108..113045/note > "exon_id=ENSE00001559133"exon 113050..113109/note > "exon_id=ENSE00001501266"exon 113185..113253/note > "exon_id=ENSE00001501264"exon 113254..113638/note > "exon_id=ENSE00001547725"exon 114269..114828/note > "exon_id=ENSE00001549427"exon 123275..123510/note > "exon_id=ENSE00001559090"exon 122692..122931/note > "exon_id=ENSE00001563701"exon complement(123532..123603)/note > "exon_id=ENSE00001501262"exon 123970..124556/note > "exon_id=ENSE00001557597"exon 124837..125403/note > "exon_id=ENSE00001550417"exon 125910..126001/note > "exon_id=ENSE00001552084"exon 126004..126327/note > "exon_id=ENSE00001549044"exon 126383..127532/note > "exon_id=ENSE00001556456"exon 127754..127840/note > "exon_id=ENSE00001562374"exon 127842..127907/note > "exon_id=ENSE00001501259"exon 129354..129411/note > "exon_id=ENSE00001501257"exon 129412..129481/note > "exon_id=ENSE00001501248"exon 129482..129726/note > "exon_id=ENSE00001554809"exon 131073..132579/note > "exon_id=ENSE00001556308"exon complement(132605..133087)/note > "exon_id=ENSE00001553181"exon 133182..134268/note > "exon_id=ENSE00001547959"exon complement(134334..134386)/note > "exon_id=ENSE00001501243"exon 135559..135629/note > "exon_id=ENSE00001501240"exon 136559..136627/note > "exon_id=ENSE00001501235"exon 263713..264741/note > "exon_id=ENSE00000675363"exon 333902..334513/note > "exon_id=ENSE00001556141"exon complement(389101..389720)/note > "exon_id=ENSE00001458479"exon complement(390537..390681)/note > "exon_id=ENSE00001105457"exon complement(390083..390172)/note > "exon_id=ENSE00001105455"exon complement(395306..395427)/note > "exon_id=ENSE00001564718"exon complement(419437..419535)/note > "exon_id=ENSE00001458464"exon complement(409839..409943)/note > "exon_id=ENSE00001322720"exon complement(404055..404187)/note > "exon_id=ENSE00001302178"exon complement(406454..406509)/note > "exon_id=ENSE00001293836"exon complement(402265..402441)/note > "exon_id=ENSE00001458442"exon complement(406025..406083)/note > "exon_id=ENSE00001314340"exon complement(405800..405915)/note > "exon_id=ENSE00001325188"exon complement(406204..406311)/note > "exon_id=ENSE00001313270"exon complement(410050..410133)/note > "exon_id=ENSE00001303810"exon complement(411156..411324)/note > "exon_id=ENSE00001327556"exon complement(419437..419540)/note > "exon_id=ENSE00001520502"exon complement(407017..407053)/note > "exon_id=ENSE00001322569"exon complement(409445..409514)/note > "exon_id=ENSE00001308091"exon complement(405001..405073)/note > "exon_id=ENSE00001293474"exon complement(406589..406657)/note > "exon_id=ENSE00001301210"exon complement(402682..402742)/note > "exon_id=ENSE00001327914"exon complement(409201..409289)/note > "exon_id=ENSE00001292623"exon complement(409634..409714)/note > "exon_id=ENSE00001291407"exon complement(410783..410936)/note > "exon_id=ENSE00001311406"exon complement(408696..408805)/note > "exon_id=ENSE00001309255"exon complement(405662..405704)/note > "exon_id=ENSE00000979224"exon 413637..415717/note > "exon_id=ENSE00001547073"exon complement(482560..482652)/note > "exon_id=ENSE00001438555"exon complement(532453..533340)/note > "exon_id=ENSE00001554209"exon 542590..543636/note > "exon_id=ENSE00001458417"exon 542123..542205/note > "exon_id=ENSE00000674092"exon 541565..541679/note > "exon_id=ENSE00001458401"exon 542590..543540/note > "exon_id=ENSE00001458400"exon complement(581519..581634)/note > "exon_id=ENSE00001520463"exon complement(579439..580458)/note > "exon_id=ENSE00001419203"exon complement(581046..581118)/note > "exon_id=ENSE00001263715"exon complement(580331..580420)/note > "exon_id=ENSE00001458382"exon complement(580100..580231)/note > "exon_id=ENSE00001458381"exon complement(585013..585759)/note > "exon_id=ENSE00001558162"exon complement(585929..586022)/note > "exon_id=ENSE00001556744"exon complement(600132..601031)/note > "exon_id=ENSE00001458378"exon complement(601716..601783)/note > "exon_id=ENSE00001458379"exon complement(603114..603313)/note > "exon_id=ENSE00001458380"exon complement(637301..637458)/note > "exon_id=ENSE00001458422"exon complement(637337..637448)/note > "exon_id=ENSE00001458367"exon complement(635795..636422)/note > "exon_id=ENSE00001458371"exon complement(636799..636874)/note > "exon_id=ENSE00001038555"exon complement(635943..636422)/note > "exon_id=ENSE00001458366"exon 657818..658766/note > "exon_id=ENSE00001325535"exon 657818..658529/note > "exon_id=ENSE00001458343"exon 657364..657481/note > "exon_id=ENSE00001305966"exon 657418..657481/note > "exon_id=ENSE00001458345"exon 656670..656745/note > "exon_id=ENSE00001458347"exon 656678..656745/note > "exon_id=ENSE00001291638"exon complement(673903..674170)/note > "exon_id=ENSE00001538428"exon 683524..683602/note > "exon_id=ENSE00001318428"exon 682893..683047/note > "exon_id=ENSE00001292620"exon 684056..684892/note > "exon_id=ENSE00001458330"exon 703951..704512/note > "exon_id=ENSE00001436496"exon 703357..703547/note > "exon_id=ENSE00001458275"exon 702848..703054/note > "exon_id=ENSE00001458277"exon 702781..703054/note > "exon_id=ENSE00001375610"exon 703951..704518/note > "exon_id=ENSE00001458290"exon 702767..703054/note > "exon_id=ENSE00001458297"exon 703469..703547/note > "exon_id=ENSE00001416044"exon 703904..704501/note > "exon_id=ENSE00001458276"exon 703904..704509/note > "exon_id=ENSE00001105579"exon complement(826191..829316)/note > "exon_id=ENSE00001458270"exon complement(845811..845930)/note > "exon_id=ENSE00001183586"exon complement(826195..827267)/note > "exon_id=ENSE00001173849"exon complement(843815..843966)/note > "exon_id=ENSE00001183584"exon 903535..903654/note > "exon_id=ENSE00001183544"exon 911932..912065/note > "exon_id=ENSE00001520388"exon 913090..913956/note > "exon_id=ENSE00001458264"exon 912660..912732/note > "exon_id=ENSE00001520387"exon 913090..914166/note > "exon_id=ENSE00001520386"exon 912660..912742/note > "exon_id=ENSE00001183536"exon 902911..902973/note > "exon_id=ENSE00001458265"exon 912066..912201/note > "exon_id=ENSE00001183538"exon 933892..934157/note > "exon_id=ENSE00001458260"exon 935484..936368/note > "exon_id=ENSE00001458259"exon 935479..936367/note > "exon_id=ENSE00000840307"exon 934406..934499/note > "exon_id=ENSE00001253340"exon 935045..935114/note > "exon_id=ENSE00001253332"exon 934347..934511/note > "exon_id=ENSE00001458257"exon 955405..955466/note > "exon_id=ENSE00001458249"exon 955161..955234/note > "exon_id=ENSE00001458252"exon 956326..957387/note > "exon_id=ENSE00001458247"exon 955935..956002/note > "exon_id=ENSE00001406936"exon 955935..956014/note > "exon_id=ENSE00001458248"exon complement(978174..978419)/note > "exon_id=ENSE00001250433"exon complement(978422..978547)/note > "exon_id=ENSE00001250442"STS complement(22038..22346)/standard_name > "SHGC-143390"/db_xref "UniSTS_NUM:185057"/db_xref > "UniSTS:SHGC-143390"/note "map_weight=1"STS > complement(43711..43868)/standard_name "RH78520"/db_xref > "UniSTS_NUM:73812"/db_xref "UniSTS:RH78520"/db_xref > "GM99-GB4:stSG41780"/note "map_weight=1"STS > complement(49890..50031)/standard_name "A008N06"/db_xref > "UniSTS_NUM:69104"/db_xref "UniSTS:A008N06"/note "map_weight=1"STS > complement(78623..78780)/standard_name "DXS7007E"/db_xref > "UniSTS_NUM:87907"/db_xref "UniSTS:DXS7007E"/db_xref > "WUSTL-X:sWXD2417"/note "map_weight=1"STS > complement(126684..126809)/standard_name "DXS7692"/db_xref > "UniSTS_NUM:22137"/db_xref "UniSTS:L41751"/db_xref > "UniSTS:DXS7692"/db_xref "WUSTL-X:sWXD1549"/note "map_weight=1"STS > complement(126736..126835)/standard_name "L47999"/db_xref > "UniSTS_NUM:32118"/db_xref "UniSTS:L47999"/db_xref > "WUSTL-X:sWXD1440"/note "map_weight=1"STS > complement(211742..211821)/standard_name "RH93084"/db_xref > "UniSTS_NUM:88543"/db_xref "UniSTS:RH93084"/db_xref > "GM99-GB4:stSG48268"/note "map_weight=1"STS > complement(238085..238337)/standard_name "REN69440"/db_xref > "UniSTS_NUM:394240"/db_xref "UniSTS:REN69440"/note "map_weight=3"STS > complement(265241..265340)/standard_name "WI-16593"/db_xref > "UniSTS_NUM:77493"/db_xref "UniSTS:T40480"/db_xref > "UniSTS:WI-16593"/note "map_weight=1"STS > complement(290665..290925)/standard_name "STS-N47340"/db_xref > "UniSTS_NUM:24198"/db_xref "UniSTS:STS-N47340"/note > "map_weight=1"STS complement(290723..290889)/standard_name > "RH45776"/db_xref "UniSTS_NUM:47099"/db_xref > "UniSTS:RH45776"/db_xref "GM99-GB4:stSG21435"/note "map_weight=1"STS > complement(331700..331780)/standard_name "L77850"/db_xref > "UniSTS_NUM:53608"/db_xref "UniSTS:L77850"/db_xref > "WUSTL-X:sWXD2841"/note "map_weight=1"STS > complement(389114..389226)/standard_name "RH18267"/db_xref > "UniSTS_NUM:60599"/db_xref "UniSTS:RH18267"/db_xref > "GM99-GB4:stSG9586"/note "map_weight=1"STS > complement(402304..402528)/standard_name "RH79750"/db_xref > "UniSTS_NUM:88517"/db_xref "UniSTS:RH79750"/db_xref > "GM99-GB4:sts-AA010600"/note "map_weight=1"STS > complement(402365..402517)/standard_name "RH102997"/db_xref > "UniSTS_NUM:97331"/db_xref "UniSTS:RH102997"/db_xref > "GM99-GB4:stSG54822"/note "map_weight=1"STS > complement(429978..430117)/standard_name "DXS8350"/db_xref > "UniSTS_NUM:80166"/db_xref "UniSTS:DXS8350"/db_xref > "UniSTS:L41954"/db_xref "WUSTL-X:sWXD1283"/note "map_weight=1"STS > complement(451418..451578)/standard_name "L77848"/db_xref > "UniSTS_NUM:23678"/db_xref "UniSTS:L77848"/db_xref > "WUSTL-X:sWXD2804"/note "map_weight=1"STS > complement(513264..513554)/standard_name "GDB:315297"/db_xref > "UniSTS_NUM:156514"/db_xref "UniSTS:GDB:315297"/note > "map_weight=1"STS complement(543431..543624)/standard_name > "RH80982"/db_xref "UniSTS_NUM:92748"/db_xref > "UniSTS:RH80982"/db_xref "GM99-GB4:sts-T59331"/note > "map_weight=1"STS complement(543471..543550)/standard_name > "RH46879"/db_xref "UniSTS_NUM:24442"/db_xref > "UniSTS:RH46879"/db_xref "GM99-GB4:stSG25760"/note "map_weight=1"STS > complement(579449..579628)/standard_name "RH35755"/db_xref > "UniSTS_NUM:71842"/db_xref "UniSTS:RH35755"/db_xref > "GM99-GB4:stSG1764"/note "map_weight=1"STS > complement(579510..579715)/standard_name "A002R41"/db_xref > "UniSTS_NUM:5253"/db_xref "UniSTS:A002R41"/note "map_weight=1"STS > complement(579804..579931)/standard_name "STS-R85811"/db_xref > "UniSTS_NUM:50348"/db_xref "UniSTS:STS-R85811"/note > "map_weight=1"STS complement(635821..635946)/standard_name > "WI-15922"/db_xref "UniSTS_NUM:62839"/db_xref > "UniSTS:WI-15922"/db_xref "UniSTS:G23964"/db_xref > "UniSTS:R43117"/note "map_weight=1"STS > complement(649415..649545)/standard_name "G22062"/db_xref > "UniSTS_NUM:66864"/db_xref "UniSTS:G22062"/note "map_weight=1"STS > complement(658543..658670)/standard_name "RH12449"/db_xref > "UniSTS_NUM:76451"/db_xref "UniSTS:RH12449"/db_xref > "GM99-GB4:stSG3774"/note "map_weight=1"STS > complement(684688..684818)/standard_name "A006A03"/db_xref > "UniSTS_NUM:41216"/db_xref "UniSTS:A006A03"/note "map_weight=1"STS > complement(684688..684818)/standard_name "G20641"/db_xref > "UniSTS_NUM:41217"/db_xref "UniSTS:G20641"/note "map_weight=1"STS > complement(703954..704452)/standard_name "141173"/db_xref > "UniSTS_NUM:141173"/note "map_weight=1"STS > complement(704257..704403)/standard_name "DXS6984E"/db_xref > "UniSTS_NUM:2498"/db_xref "UniSTS:DXS6984E"/db_xref > "GM99-GB4:stSG2932"/note "map_weight=1"STS > complement(704291..704471)/standard_name "STS-M38188"/db_xref > "UniSTS_NUM:60882"/db_xref "UniSTS:STS-M38188"/note > "map_weight=1"STS complement(704352..704489)/standard_name > "D5S2593"/db_xref "UniSTS_NUM:32572"/db_xref > "UniSTS:D5S2593"/db_xref "UniSTS:G13550"/note "map_weight=1"STS > complement(732457..732578)/standard_name "AL035140"/db_xref > "UniSTS_NUM:94651"/db_xref "UniSTS:AL035140"/note "map_weight=1"STS > complement(754777..754899)/standard_name "AL035146"/db_xref > "UniSTS_NUM:94658"/db_xref "UniSTS:AL035146"/note "map_weight=1"STS > complement(792227..792346)/standard_name "AF020181"/db_xref > "UniSTS_NUM:39479"/db_xref "UniSTS:AF020181"/db_xref > "WUSTL-X:sWXD3585"/note "map_weight=1"STS > complement(796966..797049)/standard_name "L77845"/db_xref > "UniSTS_NUM:57902"/db_xref "UniSTS:L77845"/db_xref > "WUSTL-X:sWXD2783"/note "map_weight=1"STS > complement(803577..803776)/standard_name "DXS1106"/db_xref > "UniSTS_NUM:30651"/db_xref "UniSTS:DXS1106"/db_xref > "GM99-GB4:AFM263we1"/db_xref "TNG:SHGC-1092"/note "map_weight=1"STS > complement(803580..803758)/standard_name "DXS1106"/db_xref > "UniSTS_NUM:63232"/db_xref "UniSTS:Z17276"/db_xref > "UniSTS:DXS1106"/db_xref "Genethon:AFM263we1"/db_xref > "WUSTL-X:sWXD672"/note "map_weight=1"STS > complement(804260..804395)/standard_name "AF020152"/db_xref > "UniSTS_NUM:45420"/db_xref "UniSTS:AF020152"/db_xref > "WUSTL-X:sWXD3586"/note "map_weight=1"STS > complement(853592..853826)/standard_name "DXS8096"/db_xref > "UniSTS_NUM:21236"/db_xref "UniSTS:DXS8096"/db_xref > "UniSTS:Z51652"/db_xref "GM99-G3:AFMa051tc5"/db_xref > "SHGC-G3:SHGC-21230"/note "map_weight=1"STS > complement(853592..853864)/standard_name "SHGC-150960"/db_xref > "UniSTS_NUM:173428"/db_xref "UniSTS:SHGC-150960"/note > "map_weight=1"STS complement(906210..906384)/standard_name > "AL008935"/db_xref "UniSTS_NUM:79896"/db_xref "UniSTS:AL008935"/note > "map_weight=1"STS complement(914019..914122)/standard_name > "STS-W88790"/db_xref "UniSTS_NUM:82788"/db_xref > "UniSTS:STS-W88790"/note "map_weight=1"STS > complement(914808..914927)/standard_name "SHGC-52701"/db_xref > "UniSTS_NUM:11495"/db_xref "UniSTS:SHGC-52701"/db_xref > "UniSTS:G36701"/note "map_weight=1"STS > complement(916610..916774)/standard_name "RH45868"/db_xref > "UniSTS_NUM:63171"/db_xref "UniSTS:RH45868"/db_xref > "GM99-GB4:stSG21595"/note "map_weight=1"STS > complement(936075..936201)/standard_name "RH78743"/db_xref > "UniSTS_NUM:4877"/db_xref "UniSTS:RH78743"/db_xref > "GM99-GB4:stSG42368"/note "map_weight=2"STS > complement(936198..936325)/standard_name "SHGC-34973"/db_xref > "UniSTS_NUM:23617"/db_xref "UniSTS:SHGC-34973"/db_xref > "UniSTS:G29704"/note "map_weight=1"STS > complement(939033..939162)/standard_name "RH17462"/db_xref > "UniSTS_NUM:41304"/db_xref "UniSTS:H03933"/db_xref > "UniSTS:RH17462"/note "map_weight=1"STS > complement(939050..939161)/standard_name "A005E02"/db_xref > "UniSTS_NUM:56778"/db_xref "UniSTS:G26235"/db_xref > "UniSTS:R62801"/db_xref "UniSTS:A005E02"/db_xref > "WI-RH:TIGR-A005E02"/note "map_weight=1"STS > complement(956876..956996)/standard_name "STS-M99701"/db_xref > "UniSTS_NUM:21153"/db_xref "UniSTS:STS-M99701"/note > "map_weight=1"STS complement(957185..957362)/standard_name > "RH80258"/db_xref "UniSTS_NUM:91622"/db_xref > "UniSTS:RH80258"/db_xref "GM99-GB4:sts-AA040895"/note > "map_weight=1"misc_feature 1..109496/note "contig > AL035427.17.1.161273 51778..161273(1)"misc_feature 109497..189301/note > "contig AL590407.8.1.81805 2001..81805(1)"misc_feature > 189302..225201/note "contig Z68871.2.1.37899 1..35900(-1)"misc_feature > 225202..230371/note "contig AL669904.1.1.5270 > 101..5270(1)"misc_feature 230372..267593/note "contig > Z95624.1.1.37322 1..37222(-1)"misc_feature 267594..267689/note > "contig AL645812.1.1.195 100..195(1)"misc_feature 267690..282719/note > "contig Z93943.1.1.15130 1..15030(-1)"misc_feature > 282720..327653/note "contig Z75895.1.1.45038 1..44934(-1)"misc_feature > 327654..365457/note "contig Z73361.1.1.40509 > 1..37804(-1)"misc_feature 365458..401071/note "contig > AL008708.4.1.35714 101..35714(1)"misc_feature 401072..438735/note > "contig Z75746.1.1.37764 1..37664(-1)"misc_feature 438736..478402/note > "contig Z85997.1.1.40600 1..39667(-1)"misc_feature > 478403..547950/note "contig AL035494.8.1.69648 > 101..69648(1)"misc_feature 547951..564664/note "contig > Z81014.1.1.16814 1..16714(-1)"misc_feature 564665..605385/note > "contig Z68694.1.1.40822 1..40721(-1)"misc_feature 605386..645869/note > "contig AL133348.8.1.40584 101..40584(1)"misc_feature > 645870..689721/note "contig Z92846.2.1.43952 > 101..43952(1)"misc_feature 689722..749434/note "contig > AL606763.6.1.61713 2001..61713(1)"misc_feature 749435..754942/note > "contig AL079333.8.1.7508 2001..7508(1)"misc_feature > 754943..807439/note "contig AL117327.5.1.52597 > 101..52597(1)"misc_feature 807440..848370/note "contig > Z69733.1.1.41031 1..40931(-1)"misc_feature 848371..875749/note > "contig AL035444.9.1.27479 101..27479(1)"misc_feature > 875750..897175/note "contig AL021308.1.1.21526 > 101..21526(1)"misc_feature 897176..939757/note "contig > Z73965.1.1.42686 1..42582(-1)"misc_feature 939758..944624/note > "contig Z68327.1.1.4968 1..4867(-1)"misc_feature 944625..1000000/note > "contig AL049610.9.1.100269 99..55474(1)" > Stack trace follows .... > > > at > org.biojavax.bio.seq.io.GenbankFormat.readRichSequence(GenbankFormat.java:462) > at > org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) > ... 1 more > > > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From pzgyuanf at gmail.com Sat Nov 15 10:28:14 2008 From: pzgyuanf at gmail.com (pprun) Date: Sat, 15 Nov 2008 15:28:14 -0000 Subject: [Biojava-l] An Exception Has Occurred During Parsing ensembl Genbank file Homo_sapiens.0.dat In-Reply-To: References: Message-ID: <491EEA74.4080902@gmail.com> Hi Richard, Did the original file you mean is the ensembl genbank file? If so, you can get it from ensembl website ftp://ftp.ensembl.org/pub/current_genbank/homo_sapiens/ Richard Holland ??: > This exception occurs when the Genbank file contains a db_xref entry > that does not follow the format "Type:Accession". > > It's hard to tell if this is the problem here without seeing the original file. > > cheers, > Richard > > 2008/11/15 pprun : > >> Environments: >> ------------- >> Biojava: 1.6 >> Java: 1.6.0_10; Java HotSpot(TM) Client VM 11.0-b15 >> System: Linux version 2.6.24-21-generic running on i386; UTF-8; zh_CN >> >> >> The detail: >> -------------- >> Format_object=org.biojavax.bio.seq.io.GenbankFormat >> Accession=chromosome:NCBI36:X:101815144:102815143:1 >> Id=null >> Comments=Bad dbxref >> Parse_block=FEATURES Location/Qualifierssource 1..1000000/organism >> "Homo sapiens"/db_xref "taxon:9606"gene complement(5148..5254)/gene >> ENSG00000193147/locus_tag "AL035427.17"misc_RNA >> complement(5148..5254)/gene "ENSG00000193147"/db_xref >> "Clone_based_ensembl_transcri:AL035427.17-201"/db_xref >> "RFAM:RF00026"/db_xref "AFFY_HuEx_1_0_st_v2:3985294"/note >> "snRNA"/note "transcript_id=ENST00000348857"gene 32225..32681/gene >> ENSG00000220050/locus_tag "RP4-769N13.2"misc_RNA 32225..32681/gene >> "ENSG00000220050"/db_xref "AgilentProbe:A_32_P940920"/db_xref >> "Clone_based_vega_transcript:RP4-769N13.2-001"/db_xref >> "OTTT:OTTHUMT00000057625"/note "processed_pseudogene"/note >> "transcript_id=ENST00000405532"gene 38617..44173/gene >> ENSG00000158301/locus_tag "GPRASP2"/note "G-protein coupled >> receptor-associated sorting >> protein 2 (GASP-2). [Source:Uniprot/SWISSPROT;Acc:Q96D09]"mRNA >> join(38617..38993,40223..40290,40630..40707,40978..44173)/gene >> "ENSG00000158301"/note "transcript_id=ENST00000332262"CDS >> 41311..43827/gene "ENSG00000158301"/protein_id >> "ENSP00000339057"/note "transcript_id=ENST00000332262"/db_xref >> "HGNC:GPRASP2"/db_xref "CCDS:CCDS14501.1"/db_xref >> "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref >> "RefSeq_peptide:NP_001004051.1"/db_xref >> "RefSeq_peptide:NP_612446.1"/db_xref >> "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref >> "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref >> "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref >> "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref >> "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_curated_transcript:GPRASP2-001"/db_xref >> "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref >> "UniGene:Hs.603154"/db_xref "protein_id:AAH13576.1"/db_xref >> "protein_id:AAH36772.1"/db_xref "protein_id:BAC04010.1"/db_xref >> "protein_id:BAC04692.1"/db_xref "protein_id:CAI43060.1"/db_xref >> "AFFY_HG_U133B:228027_at"/db_xref >> "AFFY_HG_U133_Plus_2:228027_at"/db_xref >> "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016236"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016243"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016244"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016261"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016262"/db_xref >> "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref >> "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref >> "Illumina_V2:ILMN_8313"/db_xref "OTTT:OTTHUMT00000057626"/db_xref >> "shares_CDS_with_OTTT:GPRASP2-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057626"/translation >> "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA >> TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA >> RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES >> GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA >> SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA >> YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF >> YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW >> AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG >> SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF >> RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE >> IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR >> SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV >> CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK >> MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL >> IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"mRNA >> join(38853..38993,39571..39658,40223..40290,40630..40707, >> 40978..44173)/gene "ENSG00000158301"/note >> "transcript_id=ENST00000340885"CDS 41311..43827/gene >> "ENSG00000158301"/protein_id "ENSP00000342986"/note >> "transcript_id=ENST00000340885"/db_xref "CCDS:CCDS14501.1"/db_xref >> "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref >> "RefSeq_peptide:NP_001004051.1"/db_xref >> "RefSeq_peptide:NP_612446.1"/db_xref "RefSeq_dna:NM_001004051"/db_xref >> "RefSeq_dna:NM_138437"/db_xref >> "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref >> "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref >> "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref >> "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref >> "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_automatic_transcript:GPRASP2-201"/db_xref >> "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref >> "UniGene:Hs.603154"/db_xref "UniGene:Hs.656888"/db_xref >> "protein_id:AAH13576.1"/db_xref "protein_id:AAH36772.1"/db_xref >> "protein_id:BAC04010.1"/db_xref "protein_id:BAC04692.1"/db_xref >> "protein_id:CAI43060.1"/db_xref "AFFY_HG_U133B:228027_at"/db_xref >> "AFFY_HG_U133_Plus_2:228027_at"/db_xref >> "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016244"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016261"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016262"/db_xref >> "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref >> "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref >> "Illumina_V2:ILMN_8313"/translation >> "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA >> TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA >> RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES >> GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA >> SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA >> YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF >> YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW >> AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG >> SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF >> RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE >> IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR >> SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV >> CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK >> MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL >> IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"gene 47167..79981/gene >> ENSG00000198908/locus_tag "BHLHB9"/note "Protein BHLHB9 (bHLHB9) >> (Transcription regulator of >> 60 kDa) (p60TRP). [Source:Uniprot/SWISSPROT;Acc:Q6PI77]"mRNA >> join(47167..47262,47398..47532,75140..78879)/gene >> "ENSG00000198908"/note "transcript_id=ENST00000372738"CDS >> 75437..77080/gene "ENSG00000198908"/protein_id >> "ENSP00000361823"/note "transcript_id=ENST00000372738"/db_xref >> "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref >> "RefSeq_peptide:NP_085142.1"/db_xref "RefSeq_dna:NM_030639"/db_xref >> "EntrezGene:BHLHB9"/db_xref "AgilentProbe:A_23_P308954"/db_xref >> "AgilentProbe:A_32_P348800"/db_xref >> "AgilentProbe:A_32_P796164"/db_xref >> "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref >> "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref >> "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref >> "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-002"/db_xref >> "IPI:IPI00513802.1"/db_xref "UniGene:Hs.4276"/db_xref >> "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref >> "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref >> "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref >> "AFFY_HG_U133A_2:213709_at"/db_xref >> "AFFY_HG_U133_Plus_2:213709_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3937803"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016264"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016266"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016274"/db_xref >> "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref >> "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref >> "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref >> "OTTT:OTTHUMT00000057631"/db_xref >> "shares_CDS_with_OTTT:BHLHB9-002"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057631"/translation >> "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA >> KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK >> NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK >> PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT >> IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ >> PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS >> TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP >> SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF >> HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA >> IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"mRNA >> join(47167..47262,47398..47532,75140..78879)/gene >> "ENSG00000198908"/note "transcript_id=ENST00000361229"CDS >> 75368..77080/gene "ENSG00000198908"/protein_id >> "ENSP00000354675"/note "transcript_id=ENST00000361229"/db_xref >> "HGNC:BHLHB9"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref >> "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref >> "AgilentProbe:A_23_P308954"/db_xref >> "AgilentProbe:A_32_P348800"/db_xref >> "AgilentProbe:A_32_P796164"/db_xref >> "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref >> "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref >> "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref >> "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_automatic_transcript:BHLHB9-201"/db_xref >> "IPI:IPI00513802.1"/db_xref "IPI:IPI00844393.1"/db_xref >> "UniGene:Hs.4276"/db_xref "protein_id:AAH41409.1"/db_xref >> "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref >> "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref >> "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref >> "AFFY_HG_U133_Plus_2:213709_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3937803"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016264"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016266"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016274"/db_xref >> "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref >> "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref >> "Illumina_V1:GI_39930462-S"/db_xref >> "Illumina_V2:ILMN_3098"/translation >> "DFDLGHIENQGQDWTGPYNWASTMAGTKNKTRAQAKTEKKAAIQ >> AKAGAEREATGVVRPVAKTRAKAKAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPK >> TLGKAMGDFTPKAGNESTSSTCKNEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKN >> DKPEIGAQVCAEELEPAAGADCKPRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSR >> IVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAE >> ENACSLPVATACRPSRNTRSCSQPIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFA >> CPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTL >> IESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLK >> ILGQLTTDFVHHYIVANYFSELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMK >> ALAALKLIFNQKEAKANLVSGVAIFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEI >> IETM"mRNA >> join(72535..72615,74026..74137,74258..74352,75140..79981)/gene >> "ENSG00000198908"/note "transcript_id=ENST00000372735"CDS >> 75437..77080/gene "ENSG00000198908"/protein_id >> "ENSP00000361820"/note "transcript_id=ENST00000372735"/db_xref >> "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref >> "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref >> "AgilentCGH:A_14_P200664"/db_xref "AgilentProbe:A_23_P308954"/db_xref >> "AgilentProbe:A_32_P348800"/db_xref >> "AgilentProbe:A_32_P796164"/db_xref >> "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref >> "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref >> "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref >> "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-001"/db_xref >> "IPI:IPI00513802.1"/db_xref "UniGene:Hs.603894"/db_xref >> "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref >> "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref >> "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref >> "AFFY_HG_U133A_2:213709_at"/db_xref >> "AFFY_HG_U133_Plus_2:213709_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3937803"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016224"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016270"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016274"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016276"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016277"/db_xref >> "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref >> "Codelink:GE54272"/db_xref "Codelink:GE822399"/db_xref >> "Illumina_V1:GI_14769619-S"/db_xref >> "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref >> "OTTP:59431"/db_xref "OTTP:OTTHUMP00000023715"/db_xref >> "OTTT:OTTHUMT00000057630"/translation >> "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA >> KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK >> NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK >> PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT >> IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ >> PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS >> TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP >> SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF >> HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA >> IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"gene 99642..99712/gene >> ENSG00000209002/locus_tag "AL035427.17"misc_RNA 99642..99712/gene >> "ENSG00000209002"/db_xref >> "Clone_based_ensembl_transcri:AL035427.17-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386267"gene >> 112108..113045/gene ENSG00000216245/locus_tag "RP11-522L3.1"misc_RNA >> 112108..113045/gene "ENSG00000216245"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.1-001"/db_xref >> "OTTT:OTTHUMT00000057652"/note "processed_pseudogene"/note >> "transcript_id=ENST00000404960"gene 113050..113109/gene >> ENSG00000208995/locus_tag "AL590407.8"misc_RNA 113050..113109/gene >> "ENSG00000208995"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386260"gene >> 113185..113253/gene ENSG00000208993/locus_tag "AL590407.8"misc_RNA >> 113185..113253/gene "ENSG00000208993"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386258"gene >> 113254..114828/gene ENSG00000218436/locus_tag "RP11-522L3.2"misc_RNA >> join(113254..113638,114269..114828)/gene "ENSG00000218436"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.2-001"/db_xref >> "OTTT:OTTHUMT00000057653"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403360"gene 122692..123510/gene >> ENSG00000220260/locus_tag "RP11-522L3.3"misc_RNA >> join(122692..122931,123275..123510)/gene "ENSG00000220260"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.3-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016279"/db_xref >> "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057654"/note >> "processed_pseudogene"/note "transcript_id=ENST00000407716"gene >> complement(123532..123603)/gene ENSG00000208991/locus_tag >> "AL590407.8"misc_RNA complement(123532..123603)/gene >> "ENSG00000208991"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386256"gene >> 123970..124556/gene ENSG00000219427/locus_tag "RP11-522L3.4"misc_RNA >> 123970..124556/gene "ENSG00000219427"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.4-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016279"/db_xref >> "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057655"/note >> "processed_pseudogene"/note "transcript_id=ENST00000406243"gene >> 124837..126001/gene ENSG00000218342/locus_tag "RP11-522L3.5"misc_RNA >> join(124837..125403,125910..126001)/gene "ENSG00000218342"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.5-001"/db_xref >> "OTTT:OTTHUMT00000057656"/note "processed_pseudogene"/note >> "transcript_id=ENST00000407350"gene 126004..126327/gene >> ENSG00000220461/locus_tag "RP11-522L3.6"misc_RNA 126004..126327/gene >> "ENSG00000220461"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.6-001"/db_xref >> "OTTT:OTTHUMT00000057657"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403529"gene 126383..127840/gene >> ENSG00000220086/locus_tag "RP11-522L3.7"misc_RNA >> join(126383..127532,127754..127840)/gene "ENSG00000220086"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.7-001"/db_xref >> "OTTT:OTTHUMT00000057648"/note "processed_pseudogene"/note >> "transcript_id=ENST00000405058"gene 127842..127907/gene >> ENSG00000208988/locus_tag "AL590407.8"misc_RNA 127842..127907/gene >> "ENSG00000208988"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386253"gene >> 129354..129411/gene ENSG00000208986/locus_tag "AL590407.8"misc_RNA >> 129354..129411/gene "ENSG00000208986"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref >> "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note >> "transcript_id=ENST00000386251"gene 129412..129481/gene >> ENSG00000208977/locus_tag "AL590407.8"misc_RNA 129412..129481/gene >> "ENSG00000208977"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref >> "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note >> "transcript_id=ENST00000386242"gene 129482..132579/gene >> ENSG00000216547/locus_tag "RP11-522L3.8"misc_RNA >> join(129482..129726,131073..132579)/gene "ENSG00000216547"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.8-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:2778904"/db_xref "OTTT:OTTHUMT00000057649"/note >> "processed_pseudogene"/note "transcript_id=ENST00000402841"gene >> complement(132605..133087)/gene ENSG00000217506/locus_tag >> "RP11-522L3.9"misc_RNA complement(132605..133087)/gene >> "ENSG00000217506"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.9-001"/db_xref >> "OTTT:OTTHUMT00000057650"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403019"gene 133182..134268/gene >> ENSG00000218097/locus_tag "RP11-522L3.11"misc_RNA >> 133182..134268/gene "ENSG00000218097"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.11-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016280"/db_xref >> "AFFY_HuGene_1_0_st_v1:8174199"/db_xref "OTTT:OTTHUMT00000057651"/note >> "processed_pseudogene"/note "transcript_id=ENST00000401627"gene >> complement(134334..134386)/gene ENSG00000208972/locus_tag >> "AL590407.8"misc_RNA complement(134334..134386)/gene >> "ENSG00000208972"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386237"gene >> 135559..135629/gene ENSG00000208969/locus_tag "AL590407.8"misc_RNA >> 135559..135629/gene "ENSG00000208969"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386234"gene >> 136559..136627/gene ENSG00000208964/locus_tag "AL590407.8"misc_RNA >> 136559..136627/gene "ENSG00000208964"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386229"gene >> 263713..264741/gene ENSG00000102128/locus_tag "RAB40AL"/note >> "Ras-related protein Rab-40A-like (Ras-like GTPase). >> [Source:Uniprot/SWISSPROT;Acc:P0C0E4]"mRNA 263713..264741/gene >> "ENSG00000102128"/note "transcript_id=ENST00000218249"CDS >> 263760..264596/gene "ENSG00000102128"/protein_id >> "ENSP00000218249"/note "transcript_id=ENST00000218249"/db_xref >> "HGNC:RAB40AL"/db_xref "CCDS:CCDS35353.1"/db_xref >> "Uniprot/SWISSPROT:RB40L_HUMAN"/db_xref >> "RefSeq_peptide:NP_001027004.1"/db_xref >> "RefSeq_dna:NM_001031834"/db_xref "EntrezGene:RAB40AL"/db_xref >> "AgilentProbe:A_32_P88717"/db_xref "AgilentProbe:A_32_P88719"/db_xref >> "EMBL:BC101169"/db_xref "EMBL:BC101170"/db_xref >> "EMBL:BC101171"/db_xref "EMBL:BC101172"/db_xref >> "EMBL:Z95624"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref >> "GO:GO:0005739"/db_xref "GO:GO:0005886"/db_xref >> "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref >> "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref >> "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref >> "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40AL-001"/db_xref >> "IPI:IPI00555763.1"/db_xref "MIM_GENE:300405"/db_xref >> "UniGene:Hs.449517"/db_xref "protein_id:AAI01170.1"/db_xref >> "protein_id:AAI01171.1"/db_xref "protein_id:AAI01172.1"/db_xref >> "protein_id:AAI01173.1"/db_xref "protein_id:CAB09136.1"/db_xref >> "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref >> "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref >> "AFFY_HG_U133_Plus_2:215782_at"/db_xref >> "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref >> "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref >> "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985604"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985605"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016299"/db_xref >> "AFFY_HuGeneFL:Z95624_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref >> "Illumina_V2:ILMN_24932"/db_xref "OTTT:OTTHUMT00000057679"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057679"/db_xref >> "shares_CDS_with_OTTT:RAB40AL-001"/translation >> "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYS >> HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF >> EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN >> FNIIESFTELARIVLLRHRLNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIAL >> RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCK >> IS"gene 333902..334513/gene ENSG00000219659/locus_tag >> "LL0XNC01-73E8.1"misc_RNA 333902..334513/gene >> "ENSG00000219659"/db_xref >> "Clone_based_vega_transcript:LL0XNC01-73E8.1-001"/db_xref >> "OTTT:OTTHUMT00000057683"/note "processed_pseudogene"/note >> "transcript_id=ENST00000406951"gene complement(389101..390681)/gene >> ENSG00000133169/locus_tag "BEX1"/note "Protein BEX1 (Brain-expressed >> X-linked protein 1). >> [Source:Uniprot/SWISSPROT;Acc:Q9HBH7]"mRNA >> join(complement(390537..390681), >> complement(390083..390172),complement(389101..389720))/gene >> "ENSG00000133169"/note "transcript_id=ENST00000372728"CDS >> complement(389338..389715)/gene "ENSG00000133169"/protein_id >> "ENSP00000361813"/note "transcript_id=ENST00000372728"/db_xref >> "HGNC:BEX1"/db_xref "CCDS:CCDS35354.1"/db_xref >> "Uniprot/SWISSPROT:BEX1_HUMAN"/db_xref >> "RefSeq_peptide:NP_060946.3"/db_xref "RefSeq_dna:NM_018476"/db_xref >> "EntrezGene:BEX1"/db_xref "AgilentProbe:A_23_P159952"/db_xref >> "AgilentProbe:A_32_P168503"/db_xref "EMBL:AF183416"/db_xref >> "EMBL:AF220189"/db_xref "EMBL:AF237783"/db_xref >> "EMBL:AK290958"/db_xref "EMBL:AL008708"/db_xref >> "EMBL:AY833561"/db_xref "EMBL:BC126427"/db_xref >> "EMBL:BC126429"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0007275"/db_xref >> "GO:GO:0007399"/db_xref "GO:GO:0030154"/db_xref >> "HGNC_curated_transcript:BEX1-001"/db_xref "IPI:IPI00020533.4"/db_xref >> "MIM_GENE:300690"/db_xref "protein_id:AAF67654.1"/db_xref >> "protein_id:AAG09685.1"/db_xref "protein_id:AAG09752.1"/db_xref >> "protein_id:AAI26428.1"/db_xref "protein_id:AAI26430.1"/db_xref >> "protein_id:AAX40679.1"/db_xref "protein_id:BAF83647.1"/db_xref >> "protein_id:CAI42418.1"/db_xref "AFFY_HG_U133A:218332_at"/db_xref >> "AFFY_HG_U133A_2:218332_at"/db_xref >> "AFFY_HG_U133_Plus_2:218332_at"/db_xref >> "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985407"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985408"/db_xref >> "AFFY_U133_X3P:g8923715_3p_at"/db_xref "Codelink:GE82387"/db_xref >> "Illumina_V1:GI_15147227-S"/db_xref "Illumina_V2:ILMN_23116"/db_xref >> "OTTT:OTTHUMT00000058925"/db_xref >> "shares_CDS_with_OTTT:BEX1-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058925"/translation >> "MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYC >> VPRGNRRRFRVRQPILQYRWDMMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLS >> HSLRAVSTDPPHHDHHDEFCLMP"gene complement(395306..395427)/gene >> ENSG00000221010/locus_tag "AL008708.4"misc_RNA >> complement(395306..395427)/gene "ENSG00000221010"/db_xref >> "Clone_based_ensembl_transcri:AL008708.4-201"/note "miRNA"/note >> "transcript_id=ENST00000408083"gene complement(402265..419540)/gene >> ENSG00000147206/locus_tag "NXF3"/note "Nuclear RNA export factor 3 >> (TAP-like protein 3) >> (TAPL-3). [Source:Uniprot/SWISSPROT;Acc:Q9H4D5]"mRNA >> join(complement(419437..419535), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402682..402742), >> complement(402265..402441))/gene "ENSG00000147206"/note >> "transcript_id=ENST00000395065"CDS join(complement(419437..419464), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402731..402742))/gene >> "ENSG00000147206"/protein_id "ENSP00000378504"/note >> "transcript_id=ENST00000395065"/db_xref "CCDS:CCDS14503.1"/db_xref >> "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref >> "RefSeq_peptide:NP_071335.1"/db_xref "RefSeq_dna:NM_022052"/db_xref >> "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref >> "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref >> "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref >> "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref >> "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref >> "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003729"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0006810"/db_xref >> "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref >> "HGNC_curated_transcript:NXF3-001"/db_xref "IPI:IPI00004930.5"/db_xref >> "IPI:IPI00552760.2"/db_xref "MIM_GENE:300316"/db_xref >> "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref >> "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref >> "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref >> "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref >> "AFFY_HG_U133A:220110_s_at"/db_xref >> "AFFY_HG_U133A_2:220110_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref >> "AFFY_HG_U95E:89668_at"/db_xref >> "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref >> "Illumina_V1:GI_11545756-S"/db_xref "Illumina_V2:ILMN_19573"/db_xref >> "OTTT:OTTHUMT00000057684"/db_xref >> "shares_CDS_with_OTTT:NXF3-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057684"/translation >> "MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSS >> SHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRME >> GNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENA >> SIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQ >> EALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPG >> EKCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGS >> FFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCK >> FFKDSRNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLC >> FSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFT >> LVPTAFSSSVPAFSQEQQKMLPS"mRNA join(complement(419437..419540), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402682..402742), >> complement(402265..402441))/gene "ENSG00000147206"/note >> "transcript_id=ENST00000372709"CDS join(complement(419437..419539), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402731..402742))/gene >> "ENSG00000147206"/protein_id "ENSP00000361794"/note >> "transcript_id=ENST00000372709"/db_xref "HGNC:NXF3"/db_xref >> "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref >> "RefSeq_peptide:NP_071335.1"/db_xref >> "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref >> "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref >> "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref >> "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref >> "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref >> "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003729"/db_xref "GO:GO:0003729"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0005737"/db_xref >> "GO:GO:0006810"/db_xref "GO:GO:0016973"/db_xref >> "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref >> "HGNC_automatic_transcript:NXF3-201"/db_xref >> "IPI:IPI00004930.5"/db_xref "IPI:IPI00552760.2"/db_xref >> "IPI:IPI00872823.1"/db_xref "MIM_GENE:300316"/db_xref >> "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref >> "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref >> "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref >> "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref >> "AFFY_HG_U133A:220110_s_at"/db_xref >> "AFFY_HG_U133A_2:220110_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref >> "AFFY_HG_U95E:89668_at"/db_xref >> "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref >> "Illumina_V1:GI_11545756-S"/db_xref >> "Illumina_V2:ILMN_19573"/translation >> "LNLLQTPVPRPHRFSSREPYKDIGKMSLPSGHTTGHTDQVVQRR >> ARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRK >> GSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQN >> ECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF >> VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASL >> DVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSILELFPKLLCL >> DGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSA >> YHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDIVDSLS >> ALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSS >> SLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS"gene >> 413637..415717/gene ENSG00000217368/locus_tag >> "LL0XNC01-221F2.2"misc_RNA 413637..415717/gene >> "ENSG00000217368"/db_xref "RefSeq_dna_predicted:XR_037041"/db_xref >> "RefSeq_dna_predicted:XR_037455"/db_xref >> "RefSeq_dna_predicted:XR_039021"/db_xref >> "Clone_based_vega_transcript:LL0XNC01-221F2.2- >> 001"/db_xref "AFFY_HuEx_1_0_st_v2:3588353"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016361"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016362"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016363"/db_xref >> "AFFY_U133_X3P:Hs.195728.0.A1_3p_at"/db_xref >> "OTTT:OTTHUMT00000057692"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403064"gene complement(482560..482652)/gene >> ENSG00000200662/locus_tag "AL035494.8"misc_RNA >> complement(482560..482652)/gene "ENSG00000200662"/db_xref >> "Clone_based_ensembl_transcri:AL035494.8-201"/db_xref >> "RFAM:RF00019"/note "misc_RNA"/note >> "transcript_id=ENST00000363792"gene complement(532453..533340)/gene >> ENSG00000220705/locus_tag "RP4-635G19.1"misc_RNA >> complement(532453..533340)/gene "ENSG00000220705"/db_xref >> "Clone_based_vega_transcript:RP4-635G19.1-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:2670016"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985483"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985484"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985485"/db_xref "OTTT:OTTHUMT00000057693"/note >> "processed_pseudogene"/note "transcript_id=ENST00000402296"gene >> 541565..543636/gene ENSG00000102409/locus_tag "BEX4"/note "Protein >> BEX4 (Brain-expressed X-linked protein 4) >> (BEX1-like 1) (Nerve growth factor receptor-associated >> protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NWD9]"mRNA >> join(541565..541679,542590..543540)/gene "ENSG00000102409"/note >> "transcript_id=ENST00000372691"CDS 542595..542957/gene >> "ENSG00000102409"/protein_id "ENSP00000361776"/note >> "transcript_id=ENST00000372691"/db_xref "HGNC:BEX4"/db_xref >> "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001073894.1"/db_xref "EntrezGene:BEX4"/db_xref >> "AgilentProbe:A_24_P40551"/db_xref "AgilentProbe:A_32_P156941"/db_xref >> "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref >> "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_curated_transcript:BEX4-002"/db_xref "IPI:IPI00739732.1"/db_xref >> "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref >> "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref >> "AFFY_HG_U133A:215440_s_at"/db_xref >> "AFFY_HG_U133A_2:215440_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref >> "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016383"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref >> "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref >> "Illumina_V2:ILMN_37437"/db_xref "OTTP:59442"/db_xref >> "OTTP:OTTHUMP00000023729"/db_xref >> "OTTT:OTTHUMT00000057695"/translation >> "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ >> KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY >> MRFQTPEPDNHYDFCLIP"mRNA >> join(541565..541679,542123..542205,542590..543636)/gene >> "ENSG00000102409"/note "transcript_id=ENST00000372695"CDS >> 542595..542957/gene "ENSG00000102409"/protein_id >> "ENSP00000361780"/note "transcript_id=ENST00000372695"/db_xref >> "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001073894.1"/db_xref >> "RefSeq_dna:NM_001080425"/db_xref >> "RefSeq_dna_predicted:XM_043653"/db_xref "EntrezGene:BEX4"/db_xref >> "AgilentProbe:A_23_P114391"/db_xref "AgilentProbe:A_24_P40551"/db_xref >> "AgilentProbe:A_32_P156941"/db_xref >> "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref >> "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_curated_transcript:BEX4-001"/db_xref "IPI:IPI00739732.1"/db_xref >> "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref >> "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref >> "AFFY_HG_U133A:215440_s_at"/db_xref >> "AFFY_HG_U133A_2:215440_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref >> "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016383"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref >> "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref >> "Illumina_V2:ILMN_37437"/db_xref "OTTT:OTTHUMT00000057694"/db_xref >> "shares_CDS_with_OTTT:BEX4-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057694"/translation >> "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ >> KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY >> MRFQTPEPDNHYDFCLIP"gene complement(579439..581634)/gene >> ENSG00000180964/locus_tag "TCEAL8"/note "Transcription elongation >> factor A protein-like 8 >> (TCEA-like protein 8) (Transcription elongation factor S- >> II protein-like 8). [Source:Uniprot/SWISSPROT;Acc:Q8IYN2]"mRNA >> join(complement(581519..581634), >> complement(579439..580458))/gene "ENSG00000180964"/note >> "transcript_id=ENST00000360000"CDS complement(580067..580420)/gene >> "ENSG00000180964"/protein_id "ENSP00000353093"/note >> "transcript_id=ENST00000360000"/db_xref "HGNC:TCEAL8"/db_xref >> "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006685.1"/db_xref >> "RefSeq_peptide:NP_699164.1"/db_xref "EntrezGene:TCEAL8"/db_xref >> "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref >> "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref >> "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref >> "HGNC_curated_transcript:TCEAL8-002"/db_xref >> "IPI:IPI00217810.1"/db_xref "UniGene:Hs.612731"/db_xref >> "protein_id:AAH35573.1"/db_xref "protein_id:CAI41979.1"/db_xref >> "AFFY_HG_U133B:224819_at"/db_xref >> "AFFY_HG_U133_Plus_2:224819_at"/db_xref >> "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985503"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985505"/db_xref >> "AFFY_U133_X3P:224819_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref >> "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref >> "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057699"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057699"/db_xref >> "shares_CDS_with_OTTT:TCEAL8-002"/translation >> "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ >> EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK >> QRHSRSRPYPVCFRP"mRNA join(complement(581519..581634), >> complement(581046..581118),complement(579439..580458))/gene >> "ENSG00000180964"/note "transcript_id=ENST00000372685"CDS >> complement(580067..580420)/gene "ENSG00000180964"/protein_id >> "ENSP00000361770"/note "transcript_id=ENST00000372685"/db_xref >> "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006685.1"/db_xref >> "RefSeq_peptide:NP_699164.1"/db_xref "RefSeq_dna:NM_001006684"/db_xref >> "RefSeq_dna:NM_153333"/db_xref "EntrezGene:TCEAL8"/db_xref >> "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref >> "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref >> "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref >> "HGNC_curated_transcript:TCEAL8-001"/db_xref >> "IPI:IPI00217810.1"/db_xref "protein_id:AAH35573.1"/db_xref >> "protein_id:CAI41979.1"/db_xref "AFFY_HG_U133B:224819_at"/db_xref >> "AFFY_HG_U133_Plus_2:224819_at"/db_xref >> "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985503"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985504"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985505"/db_xref >> "AFFY_U133_X3P:224819_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref >> "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref >> "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057698"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057698"/db_xref >> "shares_CDS_with_OTTT:TCEAL8-001"/translation >> "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ >> EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK >> QRHSRSRPYPVCFRP"mRNA join(complement(580331..580420), >> complement(580100..580231))/gene "ENSG00000180964"/note >> "transcript_id=ENST00000372681"CDS join(complement(580331..580420), >> complement(580100..580231))/gene "ENSG00000180964"/protein_id >> "ENSP00000361766"/note "transcript_id=ENST00000372681"/db_xref >> "Uniprot/SPTREMBL:Q5H9L1_HUMAN"/db_xref "EMBL:Z68694"/db_xref >> "GO:GO:0003746"/db_xref "HGNC_automatic_transcript:TCEAL8-201"/db_xref >> "IPI:IPI00640443.1"/db_xref "protein_id:CAI41978.1"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985503"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985504"/translation >> "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEDTPVRHLDPEEMIR >> GVDELERLREEIRRVRNKFVMMHWKQRHSR"gene complement(585013..586022)/gene >> ENSG00000219002/locus_tag "LL0XNC01-177E8.2"misc_RNA >> join(complement(585929..586022), >> complement(585013..585759))/gene "ENSG00000219002"/db_xref >> "Clone_based_vega_transcript:LL0XNC01-177E8.2- >> 001"/db_xref "OTTT:OTTHUMT00000057697"/note >> "processed_pseudogene"/note "transcript_id=ENST00000406148"gene >> complement(600132..603313)/gene ENSG00000204065/locus_tag >> "TCEAL5"/note "Transcription elongation factor A protein-like 5 >> (TCEA-like protein 5) (Transcription elongation factor S- >> II protein-like 5). [Source:Uniprot/SWISSPROT;Acc:Q5H9L2]"mRNA >> join(complement(603114..603313), >> complement(601716..601783),complement(600132..601031))/gene >> "ENSG00000204065"/note "transcript_id=ENST00000372680"CDS >> complement(600384..601004)/gene "ENSG00000204065"/protein_id >> "ENSP00000361765"/note "transcript_id=ENST00000372680"/db_xref >> "HGNC:TCEAL5"/db_xref "CCDS:CCDS35356.1"/db_xref >> "Uniprot/SWISSPROT:TCAL5_HUMAN"/db_xref >> "RefSeq_peptide:NP_001012997.1"/db_xref >> "RefSeq_dna:NM_001012979"/db_xref >> "Uniprot/SPTREMBL:A2RUJ4_HUMAN"/db_xref "EntrezGene:TCEAL5"/db_xref >> "AgilentProbe:A_23_P62399"/db_xref "AgilentProbe:A_32_P18470"/db_xref >> "EMBL:BC132922"/db_xref "EMBL:BC132924"/db_xref >> "EMBL:CH471190"/db_xref "EMBL:Z68694"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL5-001"/db_xref >> "IPI:IPI00257932.1"/db_xref "UniGene:Hs.403462"/db_xref >> "protein_id:AAI32923.1"/db_xref "protein_id:AAI32925.1"/db_xref >> "protein_id:CAI41976.1"/db_xref "protein_id:EAW54717.1"/db_xref >> "AFFY_HG_U95E:87383_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "Codelink:GE876309"/db_xref >> "Illumina_V1:GI_29744085-S"/db_xref "Illumina_V2:ILMN_10460"/db_xref >> "OTTP:59448"/db_xref "OTTP:OTTHUMP00000023730"/db_xref >> "OTTT:OTTHUMT00000057696"/db_xref >> "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057696"/db_xref >> "shares_CDS_and_UTR_with_OTTT:TCEAL5-001"/translation >> "MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDM >> EGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRA >> AEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELR >> KKQKMGGFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV"gene >> complement(635795..637458)/gene ENSG00000133134/locus_tag >> "BEX2"/note "Protein BEX2 (Brain-expressed X-linked protein 2) >> (hBex2). [Source:Uniprot/SWISSPROT;Acc:Q9BXY8]"mRNA >> join(complement(637301..637458), >> complement(636799..636874),complement(635795..636422))/gene >> "ENSG00000133134"/note "transcript_id=ENST00000372677"CDS >> complement(636031..636417)/gene "ENSG00000133134"/protein_id >> "ENSP00000361762"/note "transcript_id=ENST00000372677"/db_xref >> "HGNC:BEX2"/db_xref "CCDS:CCDS14505.1"/db_xref >> "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref >> "RefSeq_peptide:NP_116010.1"/db_xref "RefSeq_dna:NM_032621"/db_xref >> "EntrezGene:BEX2"/db_xref "AgilentProbe:A_23_P22735"/db_xref >> "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref >> "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref >> "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-002"/db_xref >> "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref >> "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref >> "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref >> "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref >> "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref >> "AFFY_HG_U133_Plus_2:224367_at"/db_xref >> "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985510"/db_xref >> "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref >> "Illumina_V1:hmm18828-S"/db_xref "Illumina_V1:hmm36653-S"/db_xref >> "OTTT:OTTHUMT00000057702"/db_xref >> "shares_CDS_with_OTTT:BEX2-002"/db_xref >> "shares_CDS_with_OTTT:BEX2-003"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057702"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057703"/translation >> "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS >> EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK >> QLSHSLRAVSTDPPHHDHHDEFCLMP"mRNA join(complement(637337..637448), >> complement(636799..636874),complement(635943..636422))/gene >> "ENSG00000133134"/note "transcript_id=ENST00000372674"CDS >> complement(636031..636417)/gene "ENSG00000133134"/protein_id >> "ENSP00000361759"/note "transcript_id=ENST00000372674"/db_xref >> "CCDS:CCDS14505.1"/db_xref "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref >> "RefSeq_peptide:NP_116010.1"/db_xref "EntrezGene:BEX2"/db_xref >> "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref >> "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref >> "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-003"/db_xref >> "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref >> "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref >> "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref >> "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref >> "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref >> "AFFY_HG_U133_Plus_2:224367_at"/db_xref >> "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985510"/db_xref >> "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref >> "Illumina_V1:hmm18828-S"/db_xref "OTTP:59451"/db_xref >> "OTTP:OTTHUMP00000023736"/db_xref "OTTT:OTTHUMT00000057703"/db_xref >> "shares_CDS_with_ENST:ENST00000372677"/translation >> "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS >> EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK >> QLSHSLRAVSTDPPHHDHHDEFCLMP"gene 656670..658766/gene >> ENSG00000182916/locus_tag "TCEAL7"/note "Transcription elongation >> factor A protein-like 7 >> (TCEA-like protein 7) (Transcription elongation factor S- >> II protein-like 7). [Source:Uniprot/SWISSPROT;Acc:Q9BRU2]"mRNA >> join(656670..656745,657418..657481,657818..658529)/gene >> "ENSG00000182916"/note "transcript_id=ENST00000372666"CDS >> 657845..658147/gene "ENSG00000182916"/protein_id >> "ENSP00000361751"/note "transcript_id=ENST00000372666"/db_xref >> "HGNC:TCEAL7"/db_xref "CCDS:CCDS14506.1"/db_xref >> "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref >> "RefSeq_peptide:NP_689491.1"/db_xref "RefSeq_dna:NM_152278"/db_xref >> "EntrezGene:TCEAL7"/db_xref "AgilentCGH:A_14_P111438"/db_xref >> "AgilentProbe:A_23_P125788"/db_xref "AgilentProbe:A_24_P49106"/db_xref >> "EMBL:BC005988"/db_xref "EMBL:BC016786"/db_xref >> "EMBL:Z92846"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref >> "HGNC_curated_transcript:TCEAL7-002"/db_xref >> "IPI:IPI00059712.1"/db_xref "protein_id:AAH05988.2"/db_xref >> "protein_id:AAH16786.1"/db_xref "protein_id:CAI41965.1"/db_xref >> "AFFY_HG_U133B:227705_at"/db_xref >> "AFFY_HG_U133_Plus_2:227705_at"/db_xref >> "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016444"/db_xref >> "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref >> "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref >> "Illumina_V2:ILMN_13373"/db_xref "OTTP:59455"/db_xref >> "OTTP:OTTHUMP00000023738"/db_xref "OTTT:OTTHUMT00000057705"/db_xref >> "shares_CDS_with_ENST:ENST00000332431"/translation >> "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS >> LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"mRNA >> join(656678..656745,657364..657481,657818..658766)/gene >> "ENSG00000182916"/note "transcript_id=ENST00000332431"CDS >> 657845..658147/gene "ENSG00000182916"/protein_id >> "ENSP00000329794"/note "transcript_id=ENST00000332431"/db_xref >> "CCDS:CCDS14506.1"/db_xref "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref >> "RefSeq_peptide:NP_689491.1"/db_xref "EntrezGene:TCEAL7"/db_xref >> "AgilentCGH:A_14_P111438"/db_xref "AgilentProbe:A_23_P125788"/db_xref >> "AgilentProbe:A_24_P49106"/db_xref "EMBL:BC005988"/db_xref >> "EMBL:BC016786"/db_xref "EMBL:Z92846"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL7-001"/db_xref >> "IPI:IPI00059712.1"/db_xref "UniGene:Hs.602651"/db_xref >> "protein_id:AAH05988.2"/db_xref "protein_id:AAH16786.1"/db_xref >> "protein_id:CAI41965.1"/db_xref "AFFY_HG_U133B:227705_at"/db_xref >> "AFFY_HG_U133_Plus_2:227705_at"/db_xref >> "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016446"/db_xref >> "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref >> "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref >> "Illumina_V2:ILMN_13373"/db_xref "OTTT:OTTHUMT00000057704"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057704"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057705"/db_xref >> "shares_CDS_with_OTTT:TCEAL7-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL7-002"/translation >> "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS >> LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"gene >> complement(673903..674170)/gene ENSG00000215026/locus_tag >> "LL0XNC01-105G4.3"misc_RNA complement(673903..674170)/gene >> "ENSG00000215026"/db_xref "Clone_based_vega_transcript:LL0XNC01-105G4.3- >> 001"/db_xref "OTTT:OTTHUMT00000057708"/note >> "processed_pseudogene"/note "transcript_id=ENST00000399456"gene >> 682893..684892/gene ENSG00000185222/locus_tag "WBP5"/note "WW >> domain-binding protein 5 (WBP-5). >> [Source:Uniprot/SWISSPROT;Acc:Q9UHQ7]"mRNA >> join(682893..683047,684056..684892)/gene "ENSG00000185222"/note >> "transcript_id=ENST00000372656"CDS 684126..684440/gene >> "ENSG00000185222"/protein_id "ENSP00000361740"/note >> "transcript_id=ENST00000372656"/db_xref "HGNC:WBP5"/db_xref >> "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006613.1"/db_xref >> "RefSeq_peptide:NP_001006614.1"/db_xref >> "RefSeq_peptide:NP_001006615.1"/db_xref >> "RefSeq_peptide:NP_057387.1"/db_xref "EntrezGene:WBP5"/db_xref >> "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref >> "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref >> "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref >> "HGNC_curated_transcript:WBP5-002"/db_xref "IPI:IPI00008434.1"/db_xref >> "protein_id:AAF17229.1"/db_xref "protein_id:AAH23544.1"/db_xref >> "protein_id:CAD12327.1"/db_xref "AFFY_HG_Focus:217975_at"/db_xref >> "AFFY_HG_U133A:217975_at"/db_xref "AFFY_HG_U133A_2:217975_at"/db_xref >> "AFFY_HG_U133_Plus_2:217975_at"/db_xref >> "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016456"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016458"/db_xref >> "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref >> "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref >> "OTTT:OTTHUMT00000057707"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057707"/db_xref >> "shares_CDS_with_OTTT:WBP5-002"/translation >> "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT >> FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY >> LM"mRNA join(682893..683047,683524..683602,684056..684892)/gene >> "ENSG00000185222"/note "transcript_id=ENST00000372661"CDS >> 684126..684440/gene "ENSG00000185222"/protein_id >> "ENSP00000361745"/note "transcript_id=ENST00000372661"/db_xref >> "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006613.1"/db_xref >> "RefSeq_peptide:NP_001006614.1"/db_xref >> "RefSeq_peptide:NP_001006615.1"/db_xref >> "RefSeq_peptide:NP_057387.1"/db_xref "RefSeq_dna:NM_001006612"/db_xref >> "RefSeq_dna:NM_001006613"/db_xref "RefSeq_dna:NM_001006614"/db_xref >> "RefSeq_dna:NM_016303"/db_xref "EntrezGene:WBP5"/db_xref >> "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref >> "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref >> "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref >> "GO:GO:0050699"/db_xref "HGNC_curated_transcript:WBP5-001"/db_xref >> "IPI:IPI00008434.1"/db_xref "protein_id:AAF17229.1"/db_xref >> "protein_id:AAH23544.1"/db_xref "protein_id:CAD12327.1"/db_xref >> "AFFY_HG_Focus:217975_at"/db_xref "AFFY_HG_U133A:217975_at"/db_xref >> "AFFY_HG_U133A_2:217975_at"/db_xref >> "AFFY_HG_U133_Plus_2:217975_at"/db_xref >> "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016456"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016458"/db_xref >> "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref >> "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref >> "OTTT:OTTHUMT00000057706"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057706"/db_xref >> "shares_CDS_with_OTTT:WBP5-001"/translation >> "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT >> FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY >> LM"gene 702767..704518/gene ENSG00000166681/locus_tag >> "NGFRAP1"/note "Protein BEX3 (Brain-expressed X-linked protein 3) >> (p75NTR-associated cell death executor) (Nerve growth >> factor receptor-associated protein 1) (Ovarian granulosa >> cell 13.0 kDa protein HGR74). >> [Source:Uniprot/SWISSPROT;Acc:Q00994]"mRNA >> join(702767..703054,703469..703547,703904..704509)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000299872"CDS >> 703963..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000299872"/note "transcript_id=ENST00000299872"/db_xref >> "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref >> "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref >> "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref >> "HGNC_automatic_transcript:NGFRAP1-201"/db_xref >> "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "shares_CDS_with_OTTT:NGFRAP1-002"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057710"/translation >> "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR >> QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA >> join(702767..703054,703469..703547,703904..704509)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000372645"CDS >> 703933..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000361728"/note "transcript_id=ENST00000372645"/db_xref >> "HGNC:NGFRAP1"/db_xref "CCDS:CCDS14508.1"/db_xref >> "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref >> "RefSeq_peptide:NP_055195.1"/db_xref >> "RefSeq_peptide:NP_996798.1"/db_xref >> "RefSeq_peptide:NP_996800.1"/db_xref "RefSeq_dna:NM_014380"/db_xref >> "RefSeq_dna:NM_206915"/db_xref "EntrezGene:NGFRAP1"/db_xref >> "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref >> "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref >> "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref >> "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref >> "GO:GO:0005123"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref >> "GO:GO:0005829"/db_xref "GO:GO:0006915"/db_xref >> "GO:GO:0006917"/db_xref "GO:GO:0007275"/db_xref >> "GO:GO:0008625"/db_xref "GO:GO:0046872"/db_xref >> "HGNC_curated_transcript:NGFRAP1-001"/db_xref >> "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref >> "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref >> "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref >> "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref >> "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref >> "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTT:OTTHUMT00000057709"/db_xref >> "shares_CDS_with_OTTT:NGFRAP1-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057709"/translation >> "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA >> PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD >> HHDEFCLMP"mRNA join(702781..703054,703469..703547,703951..704518)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000361298"CDS >> 703963..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000354843"/note "transcript_id=ENST00000361298"/db_xref >> "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref >> "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref >> "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref >> "HGNC_curated_transcript:NGFRAP1-002"/db_xref >> "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTP:59460"/db_xref "OTTP:OTTHUMP00000023742"/db_xref >> "OTTT:OTTHUMT00000057710"/db_xref >> "shares_CDS_with_ENST:ENST00000299872"/translation >> "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR >> QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA >> join(702848..703054,703904..704501)/gene "ENSG00000166681"/note >> "transcript_id=ENST00000372635"CDS 703933..704268/gene >> "ENSG00000166681"/protein_id "ENSP00000361718"/note >> "transcript_id=ENST00000372635"/db_xref "CCDS:CCDS14508.1"/db_xref >> "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref >> "RefSeq_peptide:NP_055195.1"/db_xref >> "RefSeq_peptide:NP_996798.1"/db_xref >> "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref >> "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref >> "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref >> "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref >> "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0006915"/db_xref >> "GO:GO:0007275"/db_xref "GO:GO:0046872"/db_xref >> "HGNC_curated_transcript:NGFRAP1-003"/db_xref >> "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref >> "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref >> "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref >> "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref >> "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref >> "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTP:59461"/db_xref "OTTP:OTTHUMP00000023743"/db_xref >> "OTTT:OTTHUMT00000057711"/translation >> "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA >> PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD >> HHDEFCLMP"mRNA join(703357..703547,703951..704512)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000372634"CDS >> 703963..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000361717"/note "transcript_id=ENST00000372634"/db_xref >> "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref >> "RefSeq_dna:NM_206917"/db_xref "EntrezGene:NGFRAP1"/db_xref >> "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref >> "AgilentProbe:A_32_P27879"/db_xref >> "HGNC_curated_transcript:NGFRAP1-004"/db_xref >> "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTP:59462"/db_xref "OTTP:OTTHUMP00000023744"/db_xref >> "OTTT:OTTHUMT00000057712"/translation >> "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR >> QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"gene >> complement(826191..845930)/gene ENSG00000172476/locus_tag >> "RAB40A"/note "Ras-related protein Rab-40A (SOCS box-containing >> protein RAR2A) (Protein Rar-2). >> [Source:Uniprot/SWISSPROT;Acc:Q8WXH6]"mRNA >> complement(826191..829316)/gene "ENSG00000172476"/note >> "transcript_id=ENST00000372633"CDS complement(826364..827197)/gene >> "ENSG00000172476"/protein_id "ENSP00000361716"/note >> "transcript_id=ENST00000372633"/db_xref "HGNC:RAB40A"/db_xref >> "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref >> "RefSeq_peptide:NP_543155.2"/db_xref "RefSeq_dna:NM_080879"/db_xref >> "EntrezGene:RAB40A"/db_xref "AgilentCGH:A_14_P129520"/db_xref >> "AgilentProbe:A_23_P259912"/db_xref >> "AgilentProbe:A_32_P464296"/db_xref "AgilentProbe:A_32_P88719"/db_xref >> "EMBL:AB232637"/db_xref "EMBL:AF132748"/db_xref >> "EMBL:AF422143"/db_xref "EMBL:BC074854"/db_xref >> "EMBL:BC074855"/db_xref "EMBL:BC113501"/db_xref >> "EMBL:BC117232"/db_xref "EMBL:Z69733"/db_xref >> "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref >> "GO:GO:0005622"/db_xref "GO:GO:0005886"/db_xref >> "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref >> "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref >> "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref >> "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40A-002"/db_xref >> "IPI:IPI00514509.4"/db_xref "UniGene:Hs.27453"/db_xref >> "protein_id:AAH74854.1"/db_xref "protein_id:AAH74855.1"/db_xref >> "protein_id:AAI13502.1"/db_xref "protein_id:AAI17233.1"/db_xref >> "protein_id:AAL60514.1"/db_xref "protein_id:AAL75949.1"/db_xref >> "protein_id:BAF02899.1"/db_xref "protein_id:CAI41993.1"/db_xref >> "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref >> "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A:217589_at"/db_xref >> "AFFY_HG_U133A_2:215782_at"/db_xref >> "AFFY_HG_U133A_2:217589_at"/db_xref >> "AFFY_HG_U133_Plus_2:215782_at"/db_xref >> "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref >> "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref >> "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref >> "AFFY_HG_U95Av2:33477_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985603"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985604"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985605"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985606"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985608"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016299"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref >> "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref >> "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V1:Hs.496523-S"/db_xref >> "Illumina_V2:ILMN_123867"/db_xref "Illumina_V2:ILMN_20197"/db_xref >> "OTTP:59465"/db_xref "OTTP:OTTHUMP00000023746"/db_xref >> "OTTT:OTTHUMT00000057714"/translation >> "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS >> HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF >> EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN >> FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL >> RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI >> S"mRNA join(complement(845811..845930), >> complement(843815..843966),complement(826195..827267))/gene >> "ENSG00000172476"/note "transcript_id=ENST00000304236"CDS >> complement(826364..827197)/gene "ENSG00000172476"/protein_id >> "ENSP00000305648"/note "transcript_id=ENST00000304236"/db_xref >> "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref >> "RefSeq_peptide:NP_543155.2"/db_xref "EntrezGene:RAB40A"/db_xref >> "AgilentCGH:A_14_P129520"/db_xref "AgilentProbe:A_23_P259912"/db_xref >> "AgilentProbe:A_32_P88719"/db_xref "EMBL:AB232637"/db_xref >> "EMBL:AF132748"/db_xref "EMBL:AF422143"/db_xref >> "EMBL:BC074854"/db_xref "EMBL:BC074855"/db_xref >> "EMBL:BC113501"/db_xref "EMBL:BC117232"/db_xref >> "EMBL:Z69733"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref >> "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref >> "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref >> "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref >> "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref >> "HGNC_curated_transcript:RAB40A-001"/db_xref >> "IPI:IPI00514509.4"/db_xref "protein_id:AAH74854.1"/db_xref >> "protein_id:AAH74855.1"/db_xref "protein_id:AAI13502.1"/db_xref >> "protein_id:AAI17233.1"/db_xref "protein_id:AAL60514.1"/db_xref >> "protein_id:AAL75949.1"/db_xref "protein_id:BAF02899.1"/db_xref >> "protein_id:CAI41993.1"/db_xref "AFFY_HC_G110:107_at"/db_xref >> "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref >> "AFFY_HG_U133A:217589_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref >> "AFFY_HG_U133A_2:217589_at"/db_xref >> "AFFY_HG_U133_Plus_2:215782_at"/db_xref >> "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref >> "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref >> "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref >> "AFFY_HG_U95Av2:33477_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985603"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985604"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985605"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016299"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref >> "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref >> "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V2:ILMN_20197"/db_xref >> "OTTP:59464"/db_xref "OTTP:OTTHUMP00000023745"/db_xref >> "OTTT:OTTHUMT00000057713"/db_xref >> "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057713"/db_xref >> "shares_CDS_and_UTR_with_OTTT:RAB40A-001"/translation >> "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS >> HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF >> EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN >> FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL >> RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI >> S"gene 902911..914166/gene ENSG00000133142/locus_tag "TCEAL4"/note >> "Transcription elongation factor A protein-like 4 >> (TCEA-like protein 4) (Transcription elongation factor S- >> II protein-like 4). [Source:Uniprot/SWISSPROT;Acc:Q96EI5]"mRNA >> join(902911..902973,903535..903654,912066..912201, >> 912660..912742,913090..913956)/gene "ENSG00000133142"/note >> "transcript_id=ENST00000372629"CDS >> join(902911..902973,903535..903654,912066..912201, >> 912660..912742,913090..913764)/gene >> "ENSG00000133142"/protein_id "ENSP00000361712"/note >> "transcript_id=ENST00000372629"/db_xref "HGNC:TCEAL4"/db_xref >> "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006936.1"/db_xref >> "RefSeq_peptide:NP_001006937.1"/db_xref >> "RefSeq_peptide:NP_001006938.1"/db_xref >> "RefSeq_peptide:NP_079139.4"/db_xref >> "Uniprot/Varsplic:Q96EI5-2"/db_xref "EntrezGene:TCEAL4"/db_xref >> "AgilentCGH:A_14_P118508"/db_xref "AgilentCGH:A_14_P128392"/db_xref >> "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref >> "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref >> "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL4-001"/db_xref >> "IPI:IPI00647163.1"/db_xref "IPI:IPI00657999.3"/db_xref >> "protein_id:AAG44794.1"/db_xref "protein_id:AAH12296.1"/db_xref >> "protein_id:AAL40909.1"/db_xref "protein_id:BAB15023.1"/db_xref >> "protein_id:CAI42031.1"/db_xref "AFFY_HG_U133A:202371_at"/db_xref >> "AFFY_HG_U133A_2:202371_at"/db_xref >> "AFFY_HG_U133_Plus_2:202371_at"/db_xref >> "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016542"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016545"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016547"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016548"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016549"/db_xref >> "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref >> "Illumina_V1:GI_21361595-S"/db_xref "Illumina_V2:ILMN_15986"/db_xref >> "Illumina_V2:ILMN_1896"/db_xref "OTTT:OTTHUMT00000252336"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000252336"/db_xref >> "shares_CDS_with_OTTT:TCEAL4-001"/translation >> "MPAGGQAPQLTPVIPAFWEARGLPNSKGRDKVHICQCEEWKGHI >> SYVERDITTSEIKSLPQVSVRAFHAASGTLEWRKGNGYGRGKGWGWGRVESREAGPSV >> DRDGGLRVCCSQRSAKPEKEEQPVQNPRRSVKDRKRRGNLDMEKLYSENEGMASNQGK >> MENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGK >> SEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKG >> LAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFY >> PRGPREFRGGCRAPRRDIEDIPYV"mRNA >> join(911932..912065,912660..912732,913090..914166)/gene >> "ENSG00000133142"/note "transcript_id=ENST00000395036"CDS >> 913117..913764/gene "ENSG00000133142"/protein_id >> "ENSP00000378477"/note "transcript_id=ENST00000395036"/db_xref >> "CCDS:CCDS14510.2"/db_xref "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006936.1"/db_xref >> "RefSeq_peptide:NP_001006937.1"/db_xref >> "RefSeq_peptide:NP_001006938.1"/db_xref >> "RefSeq_peptide:NP_079139.4"/db_xref "RefSeq_dna:NM_001006935"/db_xref >> "RefSeq_dna:NM_001006937"/db_xref "RefSeq_dna:NM_024863"/db_xref >> "EntrezGene:TCEAL4"/db_xref "AgilentCGH:A_14_P128392"/db_xref >> "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref >> "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref >> "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL4-201"/db_xref >> "IPI:IPI00657999.3"/db_xref "protein_id:AAG44794.1"/db_xref >> "protein_id:AAH12296.1"/db_xref "protein_id:AAL40909.1"/db_xref >> "protein_id:BAB15023.1"/db_xref "protein_id:CAI42031.1"/db_xref >> "AFFY_HG_U133A:202371_at"/db_xref "AFFY_HG_U133A_2:202371_at"/db_xref >> "AFFY_HG_U133_Plus_2:202371_at"/db_xref >> "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016538"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016540"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016541"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016545"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016547"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016548"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016549"/db_xref >> "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref >> "Illumina_V1:GI_21361595-S"/db_xref >> "Illumina_V2:ILMN_1896"/translation >> "MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENE >> GKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPES >> EGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFD >> NMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV"gene >> 933892..936368/gene ENSG00000196507/locus_tag "TCEAL3"/note >> "Transcription elongation factor A protein-like 3 >> (TCEA-like protein 3) (Transcription elongation factor S- >> II protein-like 3). [Source:Uniprot/SWISSPROT;Acc:Q969E4]"mRNA >> join(933892..934157,935045..935114,935484..936368)/gene >> "ENSG00000196507"/note "transcript_id=ENST00000372628"CDS >> 935506..936108/gene "ENSG00000196507"/protein_id >> "ENSP00000361711"/note "transcript_id=ENST00000372628"/db_xref >> "HGNC:TCEAL3"/db_xref "CCDS:CCDS14511.1"/db_xref >> "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref >> "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006934.1"/db_xref >> "RefSeq_peptide:NP_116315.1"/db_xref "RefSeq_dna:NM_001006933"/db_xref >> "RefSeq_dna:NM_032926"/db_xref >> "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref >> "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref >> "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref >> "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref >> "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-002"/db_xref >> "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref >> "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref >> "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref >> "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref >> "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref >> "AFFY_HG_U133B:227279_at"/db_xref >> "AFFY_HG_U133_Plus_2:227279_at"/db_xref >> "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref >> "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref >> "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref >> "OTTP:59471"/db_xref "OTTP:OTTHUMP00000023758"/db_xref >> "OTTT:OTTHUMT00000057737"/db_xref >> "shares_CDS_with_ENST:ENST00000243286"/db_xref >> "shares_CDS_with_ENST:ENST00000372627"/translation >> "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC >> EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA >> EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG >> GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA >> join(934347..934511,935045..935114,935479..936367)/gene >> "ENSG00000196507"/note "transcript_id=ENST00000243286"CDS >> 935506..936108/gene "ENSG00000196507"/protein_id >> "ENSP00000243286"/note "transcript_id=ENST00000243286"/db_xref >> "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref >> "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006934.1"/db_xref >> "RefSeq_peptide:NP_116315.1"/db_xref >> "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref >> "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref >> "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref >> "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref >> "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL3-201"/db_xref >> "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref >> "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref >> "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref >> "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref >> "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref >> "AFFY_HG_U133B:227279_at"/db_xref >> "AFFY_HG_U133_Plus_2:227279_at"/db_xref >> "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref >> "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref >> "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-002"/translation >> "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC >> EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA >> EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG >> GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA >> join(934406..934499,935045..935114,935479..936367)/gene >> "ENSG00000196507"/note "transcript_id=ENST00000372627"CDS >> 935506..936108/gene "ENSG00000196507"/protein_id >> "ENSP00000361710"/note "transcript_id=ENST00000372627"/db_xref >> "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref >> "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006934.1"/db_xref >> "RefSeq_peptide:NP_116315.1"/db_xref >> "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref >> "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref >> "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref >> "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref >> "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-001"/db_xref >> "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref >> "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref >> "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref >> "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref >> "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref >> "AFFY_HG_U133B:227279_at"/db_xref >> "AFFY_HG_U133_Plus_2:227279_at"/db_xref >> "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref >> "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref >> "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref >> "OTTT:OTTHUMT00000057736"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-002"/translation >> "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC >> EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA >> EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG >> GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"gene 955161..957387/gene >> ENSG00000172465/locus_tag "TCEAL1"/note "transcription elongation >> factor A (SII)-like 1 >> [Source:RefSeq_peptide;Acc:NP_001006641]"mRNA >> join(955161..955234,955935..956002,956326..957387)/gene >> "ENSG00000172465"/note "transcript_id=ENST00000372626"CDS >> 956358..956837/gene "ENSG00000172465"/protein_id >> "ENSP00000361709"/note "transcript_id=ENST00000372626"/db_xref >> "HGNC:TCEAL1"/db_xref "CCDS:CCDS35358.1"/db_xref >> "RefSeq_peptide:NP_001006640.1"/db_xref >> "RefSeq_peptide:NP_001006641.1"/db_xref >> "RefSeq_peptide:NP_004771.2"/db_xref "RefSeq_dna:NM_001006639"/db_xref >> "RefSeq_dna:NM_001006640"/db_xref "RefSeq_dna:NM_004780"/db_xref >> "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref >> "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref >> "AgilentProbe:A_32_P498070"/db_xref "GO:GO:0005515"/db_xref >> "HGNC_curated_transcript:TCEAL1-001"/db_xref >> "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref >> "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref >> "AFFY_HG_U133A_2:204045_at"/db_xref >> "AFFY_HG_U133_Plus_2:204045_at"/db_xref >> "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016567"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016569"/db_xref >> "AFFY_HuGeneFL:M99701_at"/db_xref >> "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref >> "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref >> "Illumina_V2:ILMN_23088"/db_xref "Illumina_V2:ILMN_28868"/db_xref >> "OTTT:OTTHUMT00000058903"/db_xref "OTTT:OTTHUMT00000058904"/db_xref >> "OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-002"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-003"/translation >> "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS >> EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF >> KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA >> join(955405..955466,955935..956002,956326..957387)/gene >> "ENSG00000172465"/note "transcript_id=ENST00000372624"CDS >> 956358..956837/gene "ENSG00000172465"/protein_id >> "ENSP00000361707"/note "transcript_id=ENST00000372624"/db_xref >> "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref >> "RefSeq_peptide:NP_001006641.1"/db_xref >> "RefSeq_peptide:NP_004771.2"/db_xref >> "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref >> "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref >> "AgilentProbe:A_32_P498070"/db_xref >> "HGNC_automatic_transcript:TCEAL1-201"/db_xref >> "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref >> "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref >> "AFFY_HG_U133A_2:204045_at"/db_xref >> "AFFY_HG_U133_Plus_2:204045_at"/db_xref >> "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016567"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016569"/db_xref >> "AFFY_HuGeneFL:M99701_at"/db_xref >> "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref >> "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref >> "Illumina_V2:ILMN_23088"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-002"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-003"/translation >> "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS >> EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF >> KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA >> join(955405..955466,955935..956014,956326..957387)/gene >> "ENSG00000172465"/note "transcript_id=ENST00000372625"CDS >> 956358..956837/gene "ENSG00000172465"/protein_id >> "ENSP00000361708"/note "transcript_id=ENST00000372625"/db_xref >> "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref >> "RefSeq_peptide:NP_001006641.1"/db_xref >> "RefSeq_peptide:NP_004771.2"/db_xref >> "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref >> "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref >> "HGNC_automatic_transcript:TCEAL1-202"/db_xref >> "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref >> "UniGene:Hs.95243"/db_xref "AFFY_HG_Focus:204045_at"/db_xref >> "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref >> "AFFY_HG_U133_Plus_2:204045_at"/db_xref >> "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016567"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016569"/db_xref >> "AFFY_HuGeneFL:M99701_at"/db_xref >> "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref >> "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref >> "Illumina_V2:ILMN_23088"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-002"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-003"/translation >> "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS >> EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF >> KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"gene >> complement(978174..978547)/gene ENSG00000180284/locus_tag >> "AL049610.9"misc_RNA join(complement(978422..978547), >> complement(978174..978419))/gene "ENSG00000180284"/db_xref >> "AgilentProbe:A_24_P349428"/db_xref >> "Clone_based_ensembl_transcri:AL049610.9-201"/db_xref >> "UniGene:Hs.712229"/note "pseudogene"/note >> "transcript_id=ENST00000312731"exon complement(5148..5254)/note >> "exon_id=ENSE00001396941"exon 32225..32681/note >> "exon_id=ENSE00001553787"exon 40223..40290/note >> "exon_id=ENSE00001318862"exon 39571..39658/note >> "exon_id=ENSE00001520517"exon 38853..38993/note >> "exon_id=ENSE00001520520"exon 40978..44173/note >> "exon_id=ENSE00001435544"exon 40630..40707/note >> "exon_id=ENSE00001296863"exon 38617..38993/note >> "exon_id=ENSE00001322878"exon 74258..74352/note >> "exon_id=ENSE00001458492"exon 47398..47532/note >> "exon_id=ENSE00001359890"exon 75140..79981/note >> "exon_id=ENSE00001458491"exon 72535..72615/note >> "exon_id=ENSE00001038238"exon 74026..74137/note >> "exon_id=ENSE00001458493"exon 47167..47262/note >> "exon_id=ENSE00001359898"exon 75140..78879/note >> "exon_id=ENSE00001458499"exon 99642..99712/note >> "exon_id=ENSE00001501273"exon 112108..113045/note >> "exon_id=ENSE00001559133"exon 113050..113109/note >> "exon_id=ENSE00001501266"exon 113185..113253/note >> "exon_id=ENSE00001501264"exon 113254..113638/note >> "exon_id=ENSE00001547725"exon 114269..114828/note >> "exon_id=ENSE00001549427"exon 123275..123510/note >> "exon_id=ENSE00001559090"exon 122692..122931/note >> "exon_id=ENSE00001563701"exon complement(123532..123603)/note >> "exon_id=ENSE00001501262"exon 123970..124556/note >> "exon_id=ENSE00001557597"exon 124837..125403/note >> "exon_id=ENSE00001550417"exon 125910..126001/note >> "exon_id=ENSE00001552084"exon 126004..126327/note >> "exon_id=ENSE00001549044"exon 126383..127532/note >> "exon_id=ENSE00001556456"exon 127754..127840/note >> "exon_id=ENSE00001562374"exon 127842..127907/note >> "exon_id=ENSE00001501259"exon 129354..129411/note >> "exon_id=ENSE00001501257"exon 129412..129481/note >> "exon_id=ENSE00001501248"exon 129482..129726/note >> "exon_id=ENSE00001554809"exon 131073..132579/note >> "exon_id=ENSE00001556308"exon complement(132605..133087)/note >> "exon_id=ENSE00001553181"exon 133182..134268/note >> "exon_id=ENSE00001547959"exon complement(134334..134386)/note >> "exon_id=ENSE00001501243"exon 135559..135629/note >> "exon_id=ENSE00001501240"exon 136559..136627/note >> "exon_id=ENSE00001501235"exon 263713..264741/note >> "exon_id=ENSE00000675363"exon 333902..334513/note >> "exon_id=ENSE00001556141"exon complement(389101..389720)/note >> "exon_id=ENSE00001458479"exon complement(390537..390681)/note >> "exon_id=ENSE00001105457"exon complement(390083..390172)/note >> "exon_id=ENSE00001105455"exon complement(395306..395427)/note >> "exon_id=ENSE00001564718"exon complement(419437..419535)/note >> "exon_id=ENSE00001458464"exon complement(409839..409943)/note >> "exon_id=ENSE00001322720"exon complement(404055..404187)/note >> "exon_id=ENSE00001302178"exon complement(406454..406509)/note >> "exon_id=ENSE00001293836"exon complement(402265..402441)/note >> "exon_id=ENSE00001458442"exon complement(406025..406083)/note >> "exon_id=ENSE00001314340"exon complement(405800..405915)/note >> "exon_id=ENSE00001325188"exon complement(406204..406311)/note >> "exon_id=ENSE00001313270"exon complement(410050..410133)/note >> "exon_id=ENSE00001303810"exon complement(411156..411324)/note >> "exon_id=ENSE00001327556"exon complement(419437..419540)/note >> "exon_id=ENSE00001520502"exon complement(407017..407053)/note >> "exon_id=ENSE00001322569"exon complement(409445..409514)/note >> "exon_id=ENSE00001308091"exon complement(405001..405073)/note >> "exon_id=ENSE00001293474"exon complement(406589..406657)/note >> "exon_id=ENSE00001301210"exon complement(402682..402742)/note >> "exon_id=ENSE00001327914"exon complement(409201..409289)/note >> "exon_id=ENSE00001292623"exon complement(409634..409714)/note >> "exon_id=ENSE00001291407"exon complement(410783..410936)/note >> "exon_id=ENSE00001311406"exon complement(408696..408805)/note >> "exon_id=ENSE00001309255"exon complement(405662..405704)/note >> "exon_id=ENSE00000979224"exon 413637..415717/note >> "exon_id=ENSE00001547073"exon complement(482560..482652)/note >> "exon_id=ENSE00001438555"exon complement(532453..533340)/note >> "exon_id=ENSE00001554209"exon 542590..543636/note >> "exon_id=ENSE00001458417"exon 542123..542205/note >> "exon_id=ENSE00000674092"exon 541565..541679/note >> "exon_id=ENSE00001458401"exon 542590..543540/note >> "exon_id=ENSE00001458400"exon complement(581519..581634)/note >> "exon_id=ENSE00001520463"exon complement(579439..580458)/note >> "exon_id=ENSE00001419203"exon complement(581046..581118)/note >> "exon_id=ENSE00001263715"exon complement(580331..580420)/note >> "exon_id=ENSE00001458382"exon complement(580100..580231)/note >> "exon_id=ENSE00001458381"exon complement(585013..585759)/note >> "exon_id=ENSE00001558162"exon complement(585929..586022)/note >> "exon_id=ENSE00001556744"exon complement(600132..601031)/note >> "exon_id=ENSE00001458378"exon complement(601716..601783)/note >> "exon_id=ENSE00001458379"exon complement(603114..603313)/note >> "exon_id=ENSE00001458380"exon complement(637301..637458)/note >> "exon_id=ENSE00001458422"exon complement(637337..637448)/note >> "exon_id=ENSE00001458367"exon complement(635795..636422)/note >> "exon_id=ENSE00001458371"exon complement(636799..636874)/note >> "exon_id=ENSE00001038555"exon complement(635943..636422)/note >> "exon_id=ENSE00001458366"exon 657818..658766/note >> "exon_id=ENSE00001325535"exon 657818..658529/note >> "exon_id=ENSE00001458343"exon 657364..657481/note >> "exon_id=ENSE00001305966"exon 657418..657481/note >> "exon_id=ENSE00001458345"exon 656670..656745/note >> "exon_id=ENSE00001458347"exon 656678..656745/note >> "exon_id=ENSE00001291638"exon complement(673903..674170)/note >> "exon_id=ENSE00001538428"exon 683524..683602/note >> "exon_id=ENSE00001318428"exon 682893..683047/note >> "exon_id=ENSE00001292620"exon 684056..684892/note >> "exon_id=ENSE00001458330"exon 703951..704512/note >> "exon_id=ENSE00001436496"exon 703357..703547/note >> "exon_id=ENSE00001458275"exon 702848..703054/note >> "exon_id=ENSE00001458277"exon 702781..703054/note >> "exon_id=ENSE00001375610"exon 703951..704518/note >> "exon_id=ENSE00001458290"exon 702767..703054/note >> "exon_id=ENSE00001458297"exon 703469..703547/note >> "exon_id=ENSE00001416044"exon 703904..704501/note >> "exon_id=ENSE00001458276"exon 703904..704509/note >> "exon_id=ENSE00001105579"exon complement(826191..829316)/note >> "exon_id=ENSE00001458270"exon complement(845811..845930)/note >> "exon_id=ENSE00001183586"exon complement(826195..827267)/note >> "exon_id=ENSE00001173849"exon complement(843815..843966)/note >> "exon_id=ENSE00001183584"exon 903535..903654/note >> "exon_id=ENSE00001183544"exon 911932..912065/note >> "exon_id=ENSE00001520388"exon 913090..913956/note >> "exon_id=ENSE00001458264"exon 912660..912732/note >> "exon_id=ENSE00001520387"exon 913090..914166/note >> "exon_id=ENSE00001520386"exon 912660..912742/note >> "exon_id=ENSE00001183536"exon 902911..902973/note >> "exon_id=ENSE00001458265"exon 912066..912201/note >> "exon_id=ENSE00001183538"exon 933892..934157/note >> "exon_id=ENSE00001458260"exon 935484..936368/note >> "exon_id=ENSE00001458259"exon 935479..936367/note >> "exon_id=ENSE00000840307"exon 934406..934499/note >> "exon_id=ENSE00001253340"exon 935045..935114/note >> "exon_id=ENSE00001253332"exon 934347..934511/note >> "exon_id=ENSE00001458257"exon 955405..955466/note >> "exon_id=ENSE00001458249"exon 955161..955234/note >> "exon_id=ENSE00001458252"exon 956326..957387/note >> "exon_id=ENSE00001458247"exon 955935..956002/note >> "exon_id=ENSE00001406936"exon 955935..956014/note >> "exon_id=ENSE00001458248"exon complement(978174..978419)/note >> "exon_id=ENSE00001250433"exon complement(978422..978547)/note >> "exon_id=ENSE00001250442"STS complement(22038..22346)/standard_name >> "SHGC-143390"/db_xref "UniSTS_NUM:185057"/db_xref >> "UniSTS:SHGC-143390"/note "map_weight=1"STS >> complement(43711..43868)/standard_name "RH78520"/db_xref >> "UniSTS_NUM:73812"/db_xref "UniSTS:RH78520"/db_xref >> "GM99-GB4:stSG41780"/note "map_weight=1"STS >> complement(49890..50031)/standard_name "A008N06"/db_xref >> "UniSTS_NUM:69104"/db_xref "UniSTS:A008N06"/note "map_weight=1"STS >> complement(78623..78780)/standard_name "DXS7007E"/db_xref >> "UniSTS_NUM:87907"/db_xref "UniSTS:DXS7007E"/db_xref >> "WUSTL-X:sWXD2417"/note "map_weight=1"STS >> complement(126684..126809)/standard_name "DXS7692"/db_xref >> "UniSTS_NUM:22137"/db_xref "UniSTS:L41751"/db_xref >> "UniSTS:DXS7692"/db_xref "WUSTL-X:sWXD1549"/note "map_weight=1"STS >> complement(126736..126835)/standard_name "L47999"/db_xref >> "UniSTS_NUM:32118"/db_xref "UniSTS:L47999"/db_xref >> "WUSTL-X:sWXD1440"/note "map_weight=1"STS >> complement(211742..211821)/standard_name "RH93084"/db_xref >> "UniSTS_NUM:88543"/db_xref "UniSTS:RH93084"/db_xref >> "GM99-GB4:stSG48268"/note "map_weight=1"STS >> complement(238085..238337)/standard_name "REN69440"/db_xref >> "UniSTS_NUM:394240"/db_xref "UniSTS:REN69440"/note "map_weight=3"STS >> complement(265241..265340)/standard_name "WI-16593"/db_xref >> "UniSTS_NUM:77493"/db_xref "UniSTS:T40480"/db_xref >> "UniSTS:WI-16593"/note "map_weight=1"STS >> complement(290665..290925)/standard_name "STS-N47340"/db_xref >> "UniSTS_NUM:24198"/db_xref "UniSTS:STS-N47340"/note >> "map_weight=1"STS complement(290723..290889)/standard_name >> "RH45776"/db_xref "UniSTS_NUM:47099"/db_xref >> "UniSTS:RH45776"/db_xref "GM99-GB4:stSG21435"/note "map_weight=1"STS >> complement(331700..331780)/standard_name "L77850"/db_xref >> "UniSTS_NUM:53608"/db_xref "UniSTS:L77850"/db_xref >> "WUSTL-X:sWXD2841"/note "map_weight=1"STS >> complement(389114..389226)/standard_name "RH18267"/db_xref >> "UniSTS_NUM:60599"/db_xref "UniSTS:RH18267"/db_xref >> "GM99-GB4:stSG9586"/note "map_weight=1"STS >> complement(402304..402528)/standard_name "RH79750"/db_xref >> "UniSTS_NUM:88517"/db_xref "UniSTS:RH79750"/db_xref >> "GM99-GB4:sts-AA010600"/note "map_weight=1"STS >> complement(402365..402517)/standard_name "RH102997"/db_xref >> "UniSTS_NUM:97331"/db_xref "UniSTS:RH102997"/db_xref >> "GM99-GB4:stSG54822"/note "map_weight=1"STS >> complement(429978..430117)/standard_name "DXS8350"/db_xref >> "UniSTS_NUM:80166"/db_xref "UniSTS:DXS8350"/db_xref >> "UniSTS:L41954"/db_xref "WUSTL-X:sWXD1283"/note "map_weight=1"STS >> complement(451418..451578)/standard_name "L77848"/db_xref >> "UniSTS_NUM:23678"/db_xref "UniSTS:L77848"/db_xref >> "WUSTL-X:sWXD2804"/note "map_weight=1"STS >> complement(513264..513554)/standard_name "GDB:315297"/db_xref >> "UniSTS_NUM:156514"/db_xref "UniSTS:GDB:315297"/note >> "map_weight=1"STS complement(543431..543624)/standard_name >> "RH80982"/db_xref "UniSTS_NUM:92748"/db_xref >> "UniSTS:RH80982"/db_xref "GM99-GB4:sts-T59331"/note >> "map_weight=1"STS complement(543471..543550)/standard_name >> "RH46879"/db_xref "UniSTS_NUM:24442"/db_xref >> "UniSTS:RH46879"/db_xref "GM99-GB4:stSG25760"/note "map_weight=1"STS >> complement(579449..579628)/standard_name "RH35755"/db_xref >> "UniSTS_NUM:71842"/db_xref "UniSTS:RH35755"/db_xref >> "GM99-GB4:stSG1764"/note "map_weight=1"STS >> complement(579510..579715)/standard_name "A002R41"/db_xref >> "UniSTS_NUM:5253"/db_xref "UniSTS:A002R41"/note "map_weight=1"STS >> complement(579804..579931)/standard_name "STS-R85811"/db_xref >> "UniSTS_NUM:50348"/db_xref "UniSTS:STS-R85811"/note >> "map_weight=1"STS complement(635821..635946)/standard_name >> "WI-15922"/db_xref "UniSTS_NUM:62839"/db_xref >> "UniSTS:WI-15922"/db_xref "UniSTS:G23964"/db_xref >> "UniSTS:R43117"/note "map_weight=1"STS >> complement(649415..649545)/standard_name "G22062"/db_xref >> "UniSTS_NUM:66864"/db_xref "UniSTS:G22062"/note "map_weight=1"STS >> complement(658543..658670)/standard_name "RH12449"/db_xref >> "UniSTS_NUM:76451"/db_xref "UniSTS:RH12449"/db_xref >> "GM99-GB4:stSG3774"/note "map_weight=1"STS >> complement(684688..684818)/standard_name "A006A03"/db_xref >> "UniSTS_NUM:41216"/db_xref "UniSTS:A006A03"/note "map_weight=1"STS >> complement(684688..684818)/standard_name "G20641"/db_xref >> "UniSTS_NUM:41217"/db_xref "UniSTS:G20641"/note "map_weight=1"STS >> complement(703954..704452)/standard_name "141173"/db_xref >> "UniSTS_NUM:141173"/note "map_weight=1"STS >> complement(704257..704403)/standard_name "DXS6984E"/db_xref >> "UniSTS_NUM:2498"/db_xref "UniSTS:DXS6984E"/db_xref >> "GM99-GB4:stSG2932"/note "map_weight=1"STS >> complement(704291..704471)/standard_name "STS-M38188"/db_xref >> "UniSTS_NUM:60882"/db_xref "UniSTS:STS-M38188"/note >> "map_weight=1"STS complement(704352..704489)/standard_name >> "D5S2593"/db_xref "UniSTS_NUM:32572"/db_xref >> "UniSTS:D5S2593"/db_xref "UniSTS:G13550"/note "map_weight=1"STS >> complement(732457..732578)/standard_name "AL035140"/db_xref >> "UniSTS_NUM:94651"/db_xref "UniSTS:AL035140"/note "map_weight=1"STS >> complement(754777..754899)/standard_name "AL035146"/db_xref >> "UniSTS_NUM:94658"/db_xref "UniSTS:AL035146"/note "map_weight=1"STS >> complement(792227..792346)/standard_name "AF020181"/db_xref >> "UniSTS_NUM:39479"/db_xref "UniSTS:AF020181"/db_xref >> "WUSTL-X:sWXD3585"/note "map_weight=1"STS >> complement(796966..797049)/standard_name "L77845"/db_xref >> "UniSTS_NUM:57902"/db_xref "UniSTS:L77845"/db_xref >> "WUSTL-X:sWXD2783"/note "map_weight=1"STS >> complement(803577..803776)/standard_name "DXS1106"/db_xref >> "UniSTS_NUM:30651"/db_xref "UniSTS:DXS1106"/db_xref >> "GM99-GB4:AFM263we1"/db_xref "TNG:SHGC-1092"/note "map_weight=1"STS >> complement(803580..803758)/standard_name "DXS1106"/db_xref >> "UniSTS_NUM:63232"/db_xref "UniSTS:Z17276"/db_xref >> "UniSTS:DXS1106"/db_xref "Genethon:AFM263we1"/db_xref >> "WUSTL-X:sWXD672"/note "map_weight=1"STS >> complement(804260..804395)/standard_name "AF020152"/db_xref >> "UniSTS_NUM:45420"/db_xref "UniSTS:AF020152"/db_xref >> "WUSTL-X:sWXD3586"/note "map_weight=1"STS >> complement(853592..853826)/standard_name "DXS8096"/db_xref >> "UniSTS_NUM:21236"/db_xref "UniSTS:DXS8096"/db_xref >> "UniSTS:Z51652"/db_xref "GM99-G3:AFMa051tc5"/db_xref >> "SHGC-G3:SHGC-21230"/note "map_weight=1"STS >> complement(853592..853864)/standard_name "SHGC-150960"/db_xref >> "UniSTS_NUM:173428"/db_xref "UniSTS:SHGC-150960"/note >> "map_weight=1"STS complement(906210..906384)/standard_name >> "AL008935"/db_xref "UniSTS_NUM:79896"/db_xref "UniSTS:AL008935"/note >> "map_weight=1"STS complement(914019..914122)/standard_name >> "STS-W88790"/db_xref "UniSTS_NUM:82788"/db_xref >> "UniSTS:STS-W88790"/note "map_weight=1"STS >> complement(914808..914927)/standard_name "SHGC-52701"/db_xref >> "UniSTS_NUM:11495"/db_xref "UniSTS:SHGC-52701"/db_xref >> "UniSTS:G36701"/note "map_weight=1"STS >> complement(916610..916774)/standard_name "RH45868"/db_xref >> "UniSTS_NUM:63171"/db_xref "UniSTS:RH45868"/db_xref >> "GM99-GB4:stSG21595"/note "map_weight=1"STS >> complement(936075..936201)/standard_name "RH78743"/db_xref >> "UniSTS_NUM:4877"/db_xref "UniSTS:RH78743"/db_xref >> "GM99-GB4:stSG42368"/note "map_weight=2"STS >> complement(936198..936325)/standard_name "SHGC-34973"/db_xref >> "UniSTS_NUM:23617"/db_xref "UniSTS:SHGC-34973"/db_xref >> "UniSTS:G29704"/note "map_weight=1"STS >> complement(939033..939162)/standard_name "RH17462"/db_xref >> "UniSTS_NUM:41304"/db_xref "UniSTS:H03933"/db_xref >> "UniSTS:RH17462"/note "map_weight=1"STS >> complement(939050..939161)/standard_name "A005E02"/db_xref >> "UniSTS_NUM:56778"/db_xref "UniSTS:G26235"/db_xref >> "UniSTS:R62801"/db_xref "UniSTS:A005E02"/db_xref >> "WI-RH:TIGR-A005E02"/note "map_weight=1"STS >> complement(956876..956996)/standard_name "STS-M99701"/db_xref >> "UniSTS_NUM:21153"/db_xref "UniSTS:STS-M99701"/note >> "map_weight=1"STS complement(957185..957362)/standard_name >> "RH80258"/db_xref "UniSTS_NUM:91622"/db_xref >> "UniSTS:RH80258"/db_xref "GM99-GB4:sts-AA040895"/note >> "map_weight=1"misc_feature 1..109496/note "contig >> AL035427.17.1.161273 51778..161273(1)"misc_feature 109497..189301/note >> "contig AL590407.8.1.81805 2001..81805(1)"misc_feature >> 189302..225201/note "contig Z68871.2.1.37899 1..35900(-1)"misc_feature >> 225202..230371/note "contig AL669904.1.1.5270 >> 101..5270(1)"misc_feature 230372..267593/note "contig >> Z95624.1.1.37322 1..37222(-1)"misc_feature 267594..267689/note >> "contig AL645812.1.1.195 100..195(1)"misc_feature 267690..282719/note >> "contig Z93943.1.1.15130 1..15030(-1)"misc_feature >> 282720..327653/note "contig Z75895.1.1.45038 1..44934(-1)"misc_feature >> 327654..365457/note "contig Z73361.1.1.40509 >> 1..37804(-1)"misc_feature 365458..401071/note "contig >> AL008708.4.1.35714 101..35714(1)"misc_feature 401072..438735/note >> "contig Z75746.1.1.37764 1..37664(-1)"misc_feature 438736..478402/note >> "contig Z85997.1.1.40600 1..39667(-1)"misc_feature >> 478403..547950/note "contig AL035494.8.1.69648 >> 101..69648(1)"misc_feature 547951..564664/note "contig >> Z81014.1.1.16814 1..16714(-1)"misc_feature 564665..605385/note >> "contig Z68694.1.1.40822 1..40721(-1)"misc_feature 605386..645869/note >> "contig AL133348.8.1.40584 101..40584(1)"misc_feature >> 645870..689721/note "contig Z92846.2.1.43952 >> 101..43952(1)"misc_feature 689722..749434/note "contig >> AL606763.6.1.61713 2001..61713(1)"misc_feature 749435..754942/note >> "contig AL079333.8.1.7508 2001..7508(1)"misc_feature >> 754943..807439/note "contig AL117327.5.1.52597 >> 101..52597(1)"misc_feature 807440..848370/note "contig >> Z69733.1.1.41031 1..40931(-1)"misc_feature 848371..875749/note >> "contig AL035444.9.1.27479 101..27479(1)"misc_feature >> 875750..897175/note "contig AL021308.1.1.21526 >> 101..21526(1)"misc_feature 897176..939757/note "contig >> Z73965.1.1.42686 1..42582(-1)"misc_feature 939758..944624/note >> "contig Z68327.1.1.4968 1..4867(-1)"misc_feature 944625..1000000/note >> "contig AL049610.9.1.100269 99..55474(1)" >> Stack trace follows .... >> >> >> at >> org.biojavax.bio.seq.io.GenbankFormat.readRichSequence(GenbankFormat.java:462) >> at >> org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) >> ... 1 more >> >> >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> >> >> > > > > From holland at eaglegenomics.com Sat Nov 15 10:33:03 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Sat, 15 Nov 2008 15:33:03 -0000 Subject: [Biojava-l] An Exception Has Occurred During Parsing ensembl Genbank file Homo_sapiens.0.dat In-Reply-To: <491EEA74.4080902@gmail.com> References: <491EEA74.4080902@gmail.com> Message-ID: There are many files on that site. I need to know which specific one you are working with so that I can also attempt to parse it with some debugging options turned on. Could you attach the file you are using to an email if possible? cheers, Richard 2008/11/15 pprun : > Hi Richard, > Did the original file you mean is the ensembl genbank file? > If so, you can get it from ensembl website > ftp://ftp.ensembl.org/pub/current_genbank/homo_sapiens/ > > > > Richard Holland ??: > > This exception occurs when the Genbank file contains a db_xref entry > that does not follow the format "Type:Accession". > > It's hard to tell if this is the problem here without seeing the original > file. > > cheers, > Richard > > 2008/11/15 pprun : > > > Environments: > ------------- > Biojava: 1.6 > Java: 1.6.0_10; Java HotSpot(TM) Client VM 11.0-b15 > System: Linux version 2.6.24-21-generic running on i386; UTF-8; zh_CN > > > The detail: > -------------- > Format_object=org.biojavax.bio.seq.io.GenbankFormat > Accession=chromosome:NCBI36:X:101815144:102815143:1 > Id=null > Comments=Bad dbxref > Parse_block=FEATURES Location/Qualifierssource 1..1000000/organism > "Homo sapiens"/db_xref "taxon:9606"gene complement(5148..5254)/gene > ENSG00000193147/locus_tag "AL035427.17"misc_RNA > complement(5148..5254)/gene "ENSG00000193147"/db_xref > "Clone_based_ensembl_transcri:AL035427.17-201"/db_xref > "RFAM:RF00026"/db_xref "AFFY_HuEx_1_0_st_v2:3985294"/note > "snRNA"/note "transcript_id=ENST00000348857"gene 32225..32681/gene > ENSG00000220050/locus_tag "RP4-769N13.2"misc_RNA 32225..32681/gene > "ENSG00000220050"/db_xref "AgilentProbe:A_32_P940920"/db_xref > "Clone_based_vega_transcript:RP4-769N13.2-001"/db_xref > "OTTT:OTTHUMT00000057625"/note "processed_pseudogene"/note > "transcript_id=ENST00000405532"gene 38617..44173/gene > ENSG00000158301/locus_tag "GPRASP2"/note "G-protein coupled > receptor-associated sorting > protein 2 (GASP-2). [Source:Uniprot/SWISSPROT;Acc:Q96D09]"mRNA > join(38617..38993,40223..40290,40630..40707,40978..44173)/gene > "ENSG00000158301"/note "transcript_id=ENST00000332262"CDS > 41311..43827/gene "ENSG00000158301"/protein_id > "ENSP00000339057"/note "transcript_id=ENST00000332262"/db_xref > "HGNC:GPRASP2"/db_xref "CCDS:CCDS14501.1"/db_xref > "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref > "RefSeq_peptide:NP_001004051.1"/db_xref > "RefSeq_peptide:NP_612446.1"/db_xref > "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref > "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref > "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref > "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref > "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref > "HGNC_curated_transcript:GPRASP2-001"/db_xref > "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref > "UniGene:Hs.603154"/db_xref "protein_id:AAH13576.1"/db_xref > "protein_id:AAH36772.1"/db_xref "protein_id:BAC04010.1"/db_xref > "protein_id:BAC04692.1"/db_xref "protein_id:CAI43060.1"/db_xref > "AFFY_HG_U133B:228027_at"/db_xref > "AFFY_HG_U133_Plus_2:228027_at"/db_xref > "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref > "AFFY_HuEx_1_0_st_v2:4016236"/db_xref > "AFFY_HuEx_1_0_st_v2:4016243"/db_xref > "AFFY_HuEx_1_0_st_v2:4016244"/db_xref > "AFFY_HuEx_1_0_st_v2:4016261"/db_xref > "AFFY_HuEx_1_0_st_v2:4016262"/db_xref > "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref > "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref > "Illumina_V2:ILMN_8313"/db_xref "OTTT:OTTHUMT00000057626"/db_xref > "shares_CDS_with_OTTT:GPRASP2-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057626"/translation > "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA > TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA > RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES > GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA > SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA > YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF > YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW > AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG > SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF > RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE > IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR > SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV > CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK > MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL > IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"mRNA > join(38853..38993,39571..39658,40223..40290,40630..40707, > 40978..44173)/gene "ENSG00000158301"/note > "transcript_id=ENST00000340885"CDS 41311..43827/gene > "ENSG00000158301"/protein_id "ENSP00000342986"/note > "transcript_id=ENST00000340885"/db_xref "CCDS:CCDS14501.1"/db_xref > "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref > "RefSeq_peptide:NP_001004051.1"/db_xref > "RefSeq_peptide:NP_612446.1"/db_xref "RefSeq_dna:NM_001004051"/db_xref > "RefSeq_dna:NM_138437"/db_xref > "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref > "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref > "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref > "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref > "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref > "HGNC_automatic_transcript:GPRASP2-201"/db_xref > "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref > "UniGene:Hs.603154"/db_xref "UniGene:Hs.656888"/db_xref > "protein_id:AAH13576.1"/db_xref "protein_id:AAH36772.1"/db_xref > "protein_id:BAC04010.1"/db_xref "protein_id:BAC04692.1"/db_xref > "protein_id:CAI43060.1"/db_xref "AFFY_HG_U133B:228027_at"/db_xref > "AFFY_HG_U133_Plus_2:228027_at"/db_xref > "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref > "AFFY_HuEx_1_0_st_v2:4016244"/db_xref > "AFFY_HuEx_1_0_st_v2:4016261"/db_xref > "AFFY_HuEx_1_0_st_v2:4016262"/db_xref > "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref > "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref > "Illumina_V2:ILMN_8313"/translation > "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA > TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA > RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES > GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA > SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA > YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF > YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW > AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG > SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF > RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE > IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR > SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV > CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK > MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL > IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"gene 47167..79981/gene > ENSG00000198908/locus_tag "BHLHB9"/note "Protein BHLHB9 (bHLHB9) > (Transcription regulator of > 60 kDa) (p60TRP). [Source:Uniprot/SWISSPROT;Acc:Q6PI77]"mRNA > join(47167..47262,47398..47532,75140..78879)/gene > "ENSG00000198908"/note "transcript_id=ENST00000372738"CDS > 75437..77080/gene "ENSG00000198908"/protein_id > "ENSP00000361823"/note "transcript_id=ENST00000372738"/db_xref > "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref > "RefSeq_peptide:NP_085142.1"/db_xref "RefSeq_dna:NM_030639"/db_xref > "EntrezGene:BHLHB9"/db_xref "AgilentProbe:A_23_P308954"/db_xref > "AgilentProbe:A_32_P348800"/db_xref > "AgilentProbe:A_32_P796164"/db_xref > "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref > "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref > "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref > "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-002"/db_xref > "IPI:IPI00513802.1"/db_xref "UniGene:Hs.4276"/db_xref > "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref > "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref > "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref > "AFFY_HG_U133A_2:213709_at"/db_xref > "AFFY_HG_U133_Plus_2:213709_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3937803"/db_xref > "AFFY_HuEx_1_0_st_v2:4016264"/db_xref > "AFFY_HuEx_1_0_st_v2:4016266"/db_xref > "AFFY_HuEx_1_0_st_v2:4016274"/db_xref > "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref > "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref > "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref > "OTTT:OTTHUMT00000057631"/db_xref > "shares_CDS_with_OTTT:BHLHB9-002"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057631"/translation > "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA > KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK > NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK > PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT > IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ > PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS > TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP > SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF > HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA > IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"mRNA > join(47167..47262,47398..47532,75140..78879)/gene > "ENSG00000198908"/note "transcript_id=ENST00000361229"CDS > 75368..77080/gene "ENSG00000198908"/protein_id > "ENSP00000354675"/note "transcript_id=ENST00000361229"/db_xref > "HGNC:BHLHB9"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref > "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref > "AgilentProbe:A_23_P308954"/db_xref > "AgilentProbe:A_32_P348800"/db_xref > "AgilentProbe:A_32_P796164"/db_xref > "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref > "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref > "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref > "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_automatic_transcript:BHLHB9-201"/db_xref > "IPI:IPI00513802.1"/db_xref "IPI:IPI00844393.1"/db_xref > "UniGene:Hs.4276"/db_xref "protein_id:AAH41409.1"/db_xref > "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref > "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref > "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref > "AFFY_HG_U133_Plus_2:213709_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3937803"/db_xref > "AFFY_HuEx_1_0_st_v2:4016264"/db_xref > "AFFY_HuEx_1_0_st_v2:4016266"/db_xref > "AFFY_HuEx_1_0_st_v2:4016274"/db_xref > "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref > "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref > "Illumina_V1:GI_39930462-S"/db_xref > "Illumina_V2:ILMN_3098"/translation > "DFDLGHIENQGQDWTGPYNWASTMAGTKNKTRAQAKTEKKAAIQ > AKAGAEREATGVVRPVAKTRAKAKAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPK > TLGKAMGDFTPKAGNESTSSTCKNEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKN > DKPEIGAQVCAEELEPAAGADCKPRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSR > IVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAE > ENACSLPVATACRPSRNTRSCSQPIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFA > CPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTL > IESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLK > ILGQLTTDFVHHYIVANYFSELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMK > ALAALKLIFNQKEAKANLVSGVAIFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEI > IETM"mRNA > join(72535..72615,74026..74137,74258..74352,75140..79981)/gene > "ENSG00000198908"/note "transcript_id=ENST00000372735"CDS > 75437..77080/gene "ENSG00000198908"/protein_id > "ENSP00000361820"/note "transcript_id=ENST00000372735"/db_xref > "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref > "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref > "AgilentCGH:A_14_P200664"/db_xref "AgilentProbe:A_23_P308954"/db_xref > "AgilentProbe:A_32_P348800"/db_xref > "AgilentProbe:A_32_P796164"/db_xref > "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref > "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref > "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref > "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-001"/db_xref > "IPI:IPI00513802.1"/db_xref "UniGene:Hs.603894"/db_xref > "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref > "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref > "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref > "AFFY_HG_U133A_2:213709_at"/db_xref > "AFFY_HG_U133_Plus_2:213709_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3937803"/db_xref > "AFFY_HuEx_1_0_st_v2:4016224"/db_xref > "AFFY_HuEx_1_0_st_v2:4016270"/db_xref > "AFFY_HuEx_1_0_st_v2:4016274"/db_xref > "AFFY_HuEx_1_0_st_v2:4016276"/db_xref > "AFFY_HuEx_1_0_st_v2:4016277"/db_xref > "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref > "Codelink:GE54272"/db_xref "Codelink:GE822399"/db_xref > "Illumina_V1:GI_14769619-S"/db_xref > "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref > "OTTP:59431"/db_xref "OTTP:OTTHUMP00000023715"/db_xref > "OTTT:OTTHUMT00000057630"/translation > "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA > KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK > NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK > PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT > IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ > PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS > TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP > SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF > HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA > IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"gene 99642..99712/gene > ENSG00000209002/locus_tag "AL035427.17"misc_RNA 99642..99712/gene > "ENSG00000209002"/db_xref > "Clone_based_ensembl_transcri:AL035427.17-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386267"gene > 112108..113045/gene ENSG00000216245/locus_tag "RP11-522L3.1"misc_RNA > 112108..113045/gene "ENSG00000216245"/db_xref > "Clone_based_vega_transcript:RP11-522L3.1-001"/db_xref > "OTTT:OTTHUMT00000057652"/note "processed_pseudogene"/note > "transcript_id=ENST00000404960"gene 113050..113109/gene > ENSG00000208995/locus_tag "AL590407.8"misc_RNA 113050..113109/gene > "ENSG00000208995"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386260"gene > 113185..113253/gene ENSG00000208993/locus_tag "AL590407.8"misc_RNA > 113185..113253/gene "ENSG00000208993"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386258"gene > 113254..114828/gene ENSG00000218436/locus_tag "RP11-522L3.2"misc_RNA > join(113254..113638,114269..114828)/gene "ENSG00000218436"/db_xref > "Clone_based_vega_transcript:RP11-522L3.2-001"/db_xref > "OTTT:OTTHUMT00000057653"/note "processed_pseudogene"/note > "transcript_id=ENST00000403360"gene 122692..123510/gene > ENSG00000220260/locus_tag "RP11-522L3.3"misc_RNA > join(122692..122931,123275..123510)/gene "ENSG00000220260"/db_xref > "Clone_based_vega_transcript:RP11-522L3.3-001"/db_xref > "AFFY_HuEx_1_0_st_v2:4016279"/db_xref > "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057654"/note > "processed_pseudogene"/note "transcript_id=ENST00000407716"gene > complement(123532..123603)/gene ENSG00000208991/locus_tag > "AL590407.8"misc_RNA complement(123532..123603)/gene > "ENSG00000208991"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386256"gene > 123970..124556/gene ENSG00000219427/locus_tag "RP11-522L3.4"misc_RNA > 123970..124556/gene "ENSG00000219427"/db_xref > "Clone_based_vega_transcript:RP11-522L3.4-001"/db_xref > "AFFY_HuEx_1_0_st_v2:4016279"/db_xref > "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057655"/note > "processed_pseudogene"/note "transcript_id=ENST00000406243"gene > 124837..126001/gene ENSG00000218342/locus_tag "RP11-522L3.5"misc_RNA > join(124837..125403,125910..126001)/gene "ENSG00000218342"/db_xref > "Clone_based_vega_transcript:RP11-522L3.5-001"/db_xref > "OTTT:OTTHUMT00000057656"/note "processed_pseudogene"/note > "transcript_id=ENST00000407350"gene 126004..126327/gene > ENSG00000220461/locus_tag "RP11-522L3.6"misc_RNA 126004..126327/gene > "ENSG00000220461"/db_xref > "Clone_based_vega_transcript:RP11-522L3.6-001"/db_xref > "OTTT:OTTHUMT00000057657"/note "processed_pseudogene"/note > "transcript_id=ENST00000403529"gene 126383..127840/gene > ENSG00000220086/locus_tag "RP11-522L3.7"misc_RNA > join(126383..127532,127754..127840)/gene "ENSG00000220086"/db_xref > "Clone_based_vega_transcript:RP11-522L3.7-001"/db_xref > "OTTT:OTTHUMT00000057648"/note "processed_pseudogene"/note > "transcript_id=ENST00000405058"gene 127842..127907/gene > ENSG00000208988/locus_tag "AL590407.8"misc_RNA 127842..127907/gene > "ENSG00000208988"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386253"gene > 129354..129411/gene ENSG00000208986/locus_tag "AL590407.8"misc_RNA > 129354..129411/gene "ENSG00000208986"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref > "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note > "transcript_id=ENST00000386251"gene 129412..129481/gene > ENSG00000208977/locus_tag "AL590407.8"misc_RNA 129412..129481/gene > "ENSG00000208977"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref > "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note > "transcript_id=ENST00000386242"gene 129482..132579/gene > ENSG00000216547/locus_tag "RP11-522L3.8"misc_RNA > join(129482..129726,131073..132579)/gene "ENSG00000216547"/db_xref > "Clone_based_vega_transcript:RP11-522L3.8-001"/db_xref > "AFFY_HuEx_1_0_st_v2:2778904"/db_xref "OTTT:OTTHUMT00000057649"/note > "processed_pseudogene"/note "transcript_id=ENST00000402841"gene > complement(132605..133087)/gene ENSG00000217506/locus_tag > "RP11-522L3.9"misc_RNA complement(132605..133087)/gene > "ENSG00000217506"/db_xref > "Clone_based_vega_transcript:RP11-522L3.9-001"/db_xref > "OTTT:OTTHUMT00000057650"/note "processed_pseudogene"/note > "transcript_id=ENST00000403019"gene 133182..134268/gene > ENSG00000218097/locus_tag "RP11-522L3.11"misc_RNA > 133182..134268/gene "ENSG00000218097"/db_xref > "Clone_based_vega_transcript:RP11-522L3.11-001"/db_xref > "AFFY_HuEx_1_0_st_v2:4016280"/db_xref > "AFFY_HuGene_1_0_st_v1:8174199"/db_xref "OTTT:OTTHUMT00000057651"/note > "processed_pseudogene"/note "transcript_id=ENST00000401627"gene > complement(134334..134386)/gene ENSG00000208972/locus_tag > "AL590407.8"misc_RNA complement(134334..134386)/gene > "ENSG00000208972"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386237"gene > 135559..135629/gene ENSG00000208969/locus_tag "AL590407.8"misc_RNA > 135559..135629/gene "ENSG00000208969"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386234"gene > 136559..136627/gene ENSG00000208964/locus_tag "AL590407.8"misc_RNA > 136559..136627/gene "ENSG00000208964"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386229"gene > 263713..264741/gene ENSG00000102128/locus_tag "RAB40AL"/note > "Ras-related protein Rab-40A-like (Ras-like GTPase). > [Source:Uniprot/SWISSPROT;Acc:P0C0E4]"mRNA 263713..264741/gene > "ENSG00000102128"/note "transcript_id=ENST00000218249"CDS > 263760..264596/gene "ENSG00000102128"/protein_id > "ENSP00000218249"/note "transcript_id=ENST00000218249"/db_xref > "HGNC:RAB40AL"/db_xref "CCDS:CCDS35353.1"/db_xref > "Uniprot/SWISSPROT:RB40L_HUMAN"/db_xref > "RefSeq_peptide:NP_001027004.1"/db_xref > "RefSeq_dna:NM_001031834"/db_xref "EntrezGene:RAB40AL"/db_xref > "AgilentProbe:A_32_P88717"/db_xref "AgilentProbe:A_32_P88719"/db_xref > "EMBL:BC101169"/db_xref "EMBL:BC101170"/db_xref > "EMBL:BC101171"/db_xref "EMBL:BC101172"/db_xref > "EMBL:Z95624"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref > "GO:GO:0005739"/db_xref "GO:GO:0005886"/db_xref > "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref > "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref > "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref > "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40AL-001"/db_xref > "IPI:IPI00555763.1"/db_xref "MIM_GENE:300405"/db_xref > "UniGene:Hs.449517"/db_xref "protein_id:AAI01170.1"/db_xref > "protein_id:AAI01171.1"/db_xref "protein_id:AAI01172.1"/db_xref > "protein_id:AAI01173.1"/db_xref "protein_id:CAB09136.1"/db_xref > "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref > "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref > "AFFY_HG_U133_Plus_2:215782_at"/db_xref > "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref > "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref > "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3985604"/db_xref > "AFFY_HuEx_1_0_st_v2:3985605"/db_xref > "AFFY_HuEx_1_0_st_v2:4016299"/db_xref > "AFFY_HuGeneFL:Z95624_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref > "Illumina_V2:ILMN_24932"/db_xref "OTTT:OTTHUMT00000057679"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057679"/db_xref > "shares_CDS_with_OTTT:RAB40AL-001"/translation > "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYS > HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF > EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN > FNIIESFTELARIVLLRHRLNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIAL > RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCK > IS"gene 333902..334513/gene ENSG00000219659/locus_tag > "LL0XNC01-73E8.1"misc_RNA 333902..334513/gene > "ENSG00000219659"/db_xref > "Clone_based_vega_transcript:LL0XNC01-73E8.1-001"/db_xref > "OTTT:OTTHUMT00000057683"/note "processed_pseudogene"/note > "transcript_id=ENST00000406951"gene complement(389101..390681)/gene > ENSG00000133169/locus_tag "BEX1"/note "Protein BEX1 (Brain-expressed > X-linked protein 1). > [Source:Uniprot/SWISSPROT;Acc:Q9HBH7]"mRNA > join(complement(390537..390681), > complement(390083..390172),complement(389101..389720))/gene > "ENSG00000133169"/note "transcript_id=ENST00000372728"CDS > complement(389338..389715)/gene "ENSG00000133169"/protein_id > "ENSP00000361813"/note "transcript_id=ENST00000372728"/db_xref > "HGNC:BEX1"/db_xref "CCDS:CCDS35354.1"/db_xref > "Uniprot/SWISSPROT:BEX1_HUMAN"/db_xref > "RefSeq_peptide:NP_060946.3"/db_xref "RefSeq_dna:NM_018476"/db_xref > "EntrezGene:BEX1"/db_xref "AgilentProbe:A_23_P159952"/db_xref > "AgilentProbe:A_32_P168503"/db_xref "EMBL:AF183416"/db_xref > "EMBL:AF220189"/db_xref "EMBL:AF237783"/db_xref > "EMBL:AK290958"/db_xref "EMBL:AL008708"/db_xref > "EMBL:AY833561"/db_xref "EMBL:BC126427"/db_xref > "EMBL:BC126429"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0007275"/db_xref > "GO:GO:0007399"/db_xref "GO:GO:0030154"/db_xref > "HGNC_curated_transcript:BEX1-001"/db_xref "IPI:IPI00020533.4"/db_xref > "MIM_GENE:300690"/db_xref "protein_id:AAF67654.1"/db_xref > "protein_id:AAG09685.1"/db_xref "protein_id:AAG09752.1"/db_xref > "protein_id:AAI26428.1"/db_xref "protein_id:AAI26430.1"/db_xref > "protein_id:AAX40679.1"/db_xref "protein_id:BAF83647.1"/db_xref > "protein_id:CAI42418.1"/db_xref "AFFY_HG_U133A:218332_at"/db_xref > "AFFY_HG_U133A_2:218332_at"/db_xref > "AFFY_HG_U133_Plus_2:218332_at"/db_xref > "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref > "AFFY_HuEx_1_0_st_v2:3985407"/db_xref > "AFFY_HuEx_1_0_st_v2:3985408"/db_xref > "AFFY_U133_X3P:g8923715_3p_at"/db_xref "Codelink:GE82387"/db_xref > "Illumina_V1:GI_15147227-S"/db_xref "Illumina_V2:ILMN_23116"/db_xref > "OTTT:OTTHUMT00000058925"/db_xref > "shares_CDS_with_OTTT:BEX1-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058925"/translation > "MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYC > VPRGNRRRFRVRQPILQYRWDMMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLS > HSLRAVSTDPPHHDHHDEFCLMP"gene complement(395306..395427)/gene > ENSG00000221010/locus_tag "AL008708.4"misc_RNA > complement(395306..395427)/gene "ENSG00000221010"/db_xref > "Clone_based_ensembl_transcri:AL008708.4-201"/note "miRNA"/note > "transcript_id=ENST00000408083"gene complement(402265..419540)/gene > ENSG00000147206/locus_tag "NXF3"/note "Nuclear RNA export factor 3 > (TAP-like protein 3) > (TAPL-3). [Source:Uniprot/SWISSPROT;Acc:Q9H4D5]"mRNA > join(complement(419437..419535), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402682..402742), > complement(402265..402441))/gene "ENSG00000147206"/note > "transcript_id=ENST00000395065"CDS join(complement(419437..419464), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402731..402742))/gene > "ENSG00000147206"/protein_id "ENSP00000378504"/note > "transcript_id=ENST00000395065"/db_xref "CCDS:CCDS14503.1"/db_xref > "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref > "RefSeq_peptide:NP_071335.1"/db_xref "RefSeq_dna:NM_022052"/db_xref > "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref > "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref > "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref > "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref > "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref > "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003729"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0006810"/db_xref > "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref > "HGNC_curated_transcript:NXF3-001"/db_xref "IPI:IPI00004930.5"/db_xref > "IPI:IPI00552760.2"/db_xref "MIM_GENE:300316"/db_xref > "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref > "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref > "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref > "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref > "AFFY_HG_U133A:220110_s_at"/db_xref > "AFFY_HG_U133A_2:220110_s_at"/db_xref > "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref > "AFFY_HG_U95E:89668_at"/db_xref > "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref > "Illumina_V1:GI_11545756-S"/db_xref "Illumina_V2:ILMN_19573"/db_xref > "OTTT:OTTHUMT00000057684"/db_xref > "shares_CDS_with_OTTT:NXF3-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057684"/translation > "MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSS > SHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRME > GNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENA > SIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQ > EALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPG > EKCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGS > FFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCK > FFKDSRNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLC > FSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFT > LVPTAFSSSVPAFSQEQQKMLPS"mRNA join(complement(419437..419540), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402682..402742), > complement(402265..402441))/gene "ENSG00000147206"/note > "transcript_id=ENST00000372709"CDS join(complement(419437..419539), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402731..402742))/gene > "ENSG00000147206"/protein_id "ENSP00000361794"/note > "transcript_id=ENST00000372709"/db_xref "HGNC:NXF3"/db_xref > "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref > "RefSeq_peptide:NP_071335.1"/db_xref > "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref > "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref > "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref > "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref > "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref > "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003729"/db_xref "GO:GO:0003729"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0005737"/db_xref > "GO:GO:0006810"/db_xref "GO:GO:0016973"/db_xref > "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref > "HGNC_automatic_transcript:NXF3-201"/db_xref > "IPI:IPI00004930.5"/db_xref "IPI:IPI00552760.2"/db_xref > "IPI:IPI00872823.1"/db_xref "MIM_GENE:300316"/db_xref > "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref > "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref > "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref > "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref > "AFFY_HG_U133A:220110_s_at"/db_xref > "AFFY_HG_U133A_2:220110_s_at"/db_xref > "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref > "AFFY_HG_U95E:89668_at"/db_xref > "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref > "Illumina_V1:GI_11545756-S"/db_xref > "Illumina_V2:ILMN_19573"/translation > "LNLLQTPVPRPHRFSSREPYKDIGKMSLPSGHTTGHTDQVVQRR > ARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRK > GSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQN > ECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF > VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASL > DVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSILELFPKLLCL > DGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSA > YHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDIVDSLS > ALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSS > SLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS"gene > 413637..415717/gene ENSG00000217368/locus_tag > "LL0XNC01-221F2.2"misc_RNA 413637..415717/gene > "ENSG00000217368"/db_xref "RefSeq_dna_predicted:XR_037041"/db_xref > "RefSeq_dna_predicted:XR_037455"/db_xref > "RefSeq_dna_predicted:XR_039021"/db_xref > "Clone_based_vega_transcript:LL0XNC01-221F2.2- > 001"/db_xref "AFFY_HuEx_1_0_st_v2:3588353"/db_xref > "AFFY_HuEx_1_0_st_v2:4016361"/db_xref > "AFFY_HuEx_1_0_st_v2:4016362"/db_xref > "AFFY_HuEx_1_0_st_v2:4016363"/db_xref > "AFFY_U133_X3P:Hs.195728.0.A1_3p_at"/db_xref > "OTTT:OTTHUMT00000057692"/note "processed_pseudogene"/note > "transcript_id=ENST00000403064"gene complement(482560..482652)/gene > ENSG00000200662/locus_tag "AL035494.8"misc_RNA > complement(482560..482652)/gene "ENSG00000200662"/db_xref > "Clone_based_ensembl_transcri:AL035494.8-201"/db_xref > "RFAM:RF00019"/note "misc_RNA"/note > "transcript_id=ENST00000363792"gene complement(532453..533340)/gene > ENSG00000220705/locus_tag "RP4-635G19.1"misc_RNA > complement(532453..533340)/gene "ENSG00000220705"/db_xref > "Clone_based_vega_transcript:RP4-635G19.1-001"/db_xref > "AFFY_HuEx_1_0_st_v2:2670016"/db_xref > "AFFY_HuEx_1_0_st_v2:3985483"/db_xref > "AFFY_HuEx_1_0_st_v2:3985484"/db_xref > "AFFY_HuEx_1_0_st_v2:3985485"/db_xref "OTTT:OTTHUMT00000057693"/note > "processed_pseudogene"/note "transcript_id=ENST00000402296"gene > 541565..543636/gene ENSG00000102409/locus_tag "BEX4"/note "Protein > BEX4 (Brain-expressed X-linked protein 4) > (BEX1-like 1) (Nerve growth factor receptor-associated > protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NWD9]"mRNA > join(541565..541679,542590..543540)/gene "ENSG00000102409"/note > "transcript_id=ENST00000372691"CDS 542595..542957/gene > "ENSG00000102409"/protein_id "ENSP00000361776"/note > "transcript_id=ENST00000372691"/db_xref "HGNC:BEX4"/db_xref > "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref > "RefSeq_peptide:NP_001073894.1"/db_xref "EntrezGene:BEX4"/db_xref > "AgilentProbe:A_24_P40551"/db_xref "AgilentProbe:A_32_P156941"/db_xref > "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref > "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref > "HGNC_curated_transcript:BEX4-002"/db_xref "IPI:IPI00739732.1"/db_xref > "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref > "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref > "AFFY_HG_U133A:215440_s_at"/db_xref > "AFFY_HG_U133A_2:215440_s_at"/db_xref > "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref > "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016383"/db_xref > "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref > "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref > "Illumina_V2:ILMN_37437"/db_xref "OTTP:59442"/db_xref > "OTTP:OTTHUMP00000023729"/db_xref > "OTTT:OTTHUMT00000057695"/translation > "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ > KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY > MRFQTPEPDNHYDFCLIP"mRNA > join(541565..541679,542123..542205,542590..543636)/gene > "ENSG00000102409"/note "transcript_id=ENST00000372695"CDS > 542595..542957/gene "ENSG00000102409"/protein_id > "ENSP00000361780"/note "transcript_id=ENST00000372695"/db_xref > "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref > "RefSeq_peptide:NP_001073894.1"/db_xref > "RefSeq_dna:NM_001080425"/db_xref > "RefSeq_dna_predicted:XM_043653"/db_xref "EntrezGene:BEX4"/db_xref > "AgilentProbe:A_23_P114391"/db_xref "AgilentProbe:A_24_P40551"/db_xref > "AgilentProbe:A_32_P156941"/db_xref > "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref > "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref > "HGNC_curated_transcript:BEX4-001"/db_xref "IPI:IPI00739732.1"/db_xref > "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref > "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref > "AFFY_HG_U133A:215440_s_at"/db_xref > "AFFY_HG_U133A_2:215440_s_at"/db_xref > "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref > "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016383"/db_xref > "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref > "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref > "Illumina_V2:ILMN_37437"/db_xref "OTTT:OTTHUMT00000057694"/db_xref > "shares_CDS_with_OTTT:BEX4-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057694"/translation > "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ > KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY > MRFQTPEPDNHYDFCLIP"gene complement(579439..581634)/gene > ENSG00000180964/locus_tag "TCEAL8"/note "Transcription elongation > factor A protein-like 8 > (TCEA-like protein 8) (Transcription elongation factor S- > II protein-like 8). [Source:Uniprot/SWISSPROT;Acc:Q8IYN2]"mRNA > join(complement(581519..581634), > complement(579439..580458))/gene "ENSG00000180964"/note > "transcript_id=ENST00000360000"CDS complement(580067..580420)/gene > "ENSG00000180964"/protein_id "ENSP00000353093"/note > "transcript_id=ENST00000360000"/db_xref "HGNC:TCEAL8"/db_xref > "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref > "RefSeq_peptide:NP_001006685.1"/db_xref > "RefSeq_peptide:NP_699164.1"/db_xref "EntrezGene:TCEAL8"/db_xref > "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref > "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref > "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref > "HGNC_curated_transcript:TCEAL8-002"/db_xref > "IPI:IPI00217810.1"/db_xref "UniGene:Hs.612731"/db_xref > "protein_id:AAH35573.1"/db_xref "protein_id:CAI41979.1"/db_xref > "AFFY_HG_U133B:224819_at"/db_xref > "AFFY_HG_U133_Plus_2:224819_at"/db_xref > "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref > "AFFY_HuEx_1_0_st_v2:3985503"/db_xref > "AFFY_HuEx_1_0_st_v2:3985505"/db_xref > "AFFY_U133_X3P:224819_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref > "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref > "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057699"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057699"/db_xref > "shares_CDS_with_OTTT:TCEAL8-002"/translation > "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ > EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK > QRHSRSRPYPVCFRP"mRNA join(complement(581519..581634), > complement(581046..581118),complement(579439..580458))/gene > "ENSG00000180964"/note "transcript_id=ENST00000372685"CDS > complement(580067..580420)/gene "ENSG00000180964"/protein_id > "ENSP00000361770"/note "transcript_id=ENST00000372685"/db_xref > "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref > "RefSeq_peptide:NP_001006685.1"/db_xref > "RefSeq_peptide:NP_699164.1"/db_xref "RefSeq_dna:NM_001006684"/db_xref > "RefSeq_dna:NM_153333"/db_xref "EntrezGene:TCEAL8"/db_xref > "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref > "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref > "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref > "HGNC_curated_transcript:TCEAL8-001"/db_xref > "IPI:IPI00217810.1"/db_xref "protein_id:AAH35573.1"/db_xref > "protein_id:CAI41979.1"/db_xref "AFFY_HG_U133B:224819_at"/db_xref > "AFFY_HG_U133_Plus_2:224819_at"/db_xref > "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref > "AFFY_HuEx_1_0_st_v2:3985503"/db_xref > "AFFY_HuEx_1_0_st_v2:3985504"/db_xref > "AFFY_HuEx_1_0_st_v2:3985505"/db_xref > "AFFY_U133_X3P:224819_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref > "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref > "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057698"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057698"/db_xref > "shares_CDS_with_OTTT:TCEAL8-001"/translation > "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ > EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK > QRHSRSRPYPVCFRP"mRNA join(complement(580331..580420), > complement(580100..580231))/gene "ENSG00000180964"/note > "transcript_id=ENST00000372681"CDS join(complement(580331..580420), > complement(580100..580231))/gene "ENSG00000180964"/protein_id > "ENSP00000361766"/note "transcript_id=ENST00000372681"/db_xref > "Uniprot/SPTREMBL:Q5H9L1_HUMAN"/db_xref "EMBL:Z68694"/db_xref > "GO:GO:0003746"/db_xref "HGNC_automatic_transcript:TCEAL8-201"/db_xref > "IPI:IPI00640443.1"/db_xref "protein_id:CAI41978.1"/db_xref > "AFFY_HuEx_1_0_st_v2:3985503"/db_xref > "AFFY_HuEx_1_0_st_v2:3985504"/translation > "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEDTPVRHLDPEEMIR > GVDELERLREEIRRVRNKFVMMHWKQRHSR"gene complement(585013..586022)/gene > ENSG00000219002/locus_tag "LL0XNC01-177E8.2"misc_RNA > join(complement(585929..586022), > complement(585013..585759))/gene "ENSG00000219002"/db_xref > "Clone_based_vega_transcript:LL0XNC01-177E8.2- > 001"/db_xref "OTTT:OTTHUMT00000057697"/note > "processed_pseudogene"/note "transcript_id=ENST00000406148"gene > complement(600132..603313)/gene ENSG00000204065/locus_tag > "TCEAL5"/note "Transcription elongation factor A protein-like 5 > (TCEA-like protein 5) (Transcription elongation factor S- > II protein-like 5). [Source:Uniprot/SWISSPROT;Acc:Q5H9L2]"mRNA > join(complement(603114..603313), > complement(601716..601783),complement(600132..601031))/gene > "ENSG00000204065"/note "transcript_id=ENST00000372680"CDS > complement(600384..601004)/gene "ENSG00000204065"/protein_id > "ENSP00000361765"/note "transcript_id=ENST00000372680"/db_xref > "HGNC:TCEAL5"/db_xref "CCDS:CCDS35356.1"/db_xref > "Uniprot/SWISSPROT:TCAL5_HUMAN"/db_xref > "RefSeq_peptide:NP_001012997.1"/db_xref > "RefSeq_dna:NM_001012979"/db_xref > "Uniprot/SPTREMBL:A2RUJ4_HUMAN"/db_xref "EntrezGene:TCEAL5"/db_xref > "AgilentProbe:A_23_P62399"/db_xref "AgilentProbe:A_32_P18470"/db_xref > "EMBL:BC132922"/db_xref "EMBL:BC132924"/db_xref > "EMBL:CH471190"/db_xref "EMBL:Z68694"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL5-001"/db_xref > "IPI:IPI00257932.1"/db_xref "UniGene:Hs.403462"/db_xref > "protein_id:AAI32923.1"/db_xref "protein_id:AAI32925.1"/db_xref > "protein_id:CAI41976.1"/db_xref "protein_id:EAW54717.1"/db_xref > "AFFY_HG_U95E:87383_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "Codelink:GE876309"/db_xref > "Illumina_V1:GI_29744085-S"/db_xref "Illumina_V2:ILMN_10460"/db_xref > "OTTP:59448"/db_xref "OTTP:OTTHUMP00000023730"/db_xref > "OTTT:OTTHUMT00000057696"/db_xref > "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057696"/db_xref > "shares_CDS_and_UTR_with_OTTT:TCEAL5-001"/translation > "MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDM > EGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRA > AEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELR > KKQKMGGFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV"gene > complement(635795..637458)/gene ENSG00000133134/locus_tag > "BEX2"/note "Protein BEX2 (Brain-expressed X-linked protein 2) > (hBex2). [Source:Uniprot/SWISSPROT;Acc:Q9BXY8]"mRNA > join(complement(637301..637458), > complement(636799..636874),complement(635795..636422))/gene > "ENSG00000133134"/note "transcript_id=ENST00000372677"CDS > complement(636031..636417)/gene "ENSG00000133134"/protein_id > "ENSP00000361762"/note "transcript_id=ENST00000372677"/db_xref > "HGNC:BEX2"/db_xref "CCDS:CCDS14505.1"/db_xref > "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref > "RefSeq_peptide:NP_116010.1"/db_xref "RefSeq_dna:NM_032621"/db_xref > "EntrezGene:BEX2"/db_xref "AgilentProbe:A_23_P22735"/db_xref > "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref > "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref > "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-002"/db_xref > "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref > "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref > "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref > "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref > "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref > "AFFY_HG_U133_Plus_2:224367_at"/db_xref > "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref > "AFFY_HuEx_1_0_st_v2:3985510"/db_xref > "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref > "Illumina_V1:hmm18828-S"/db_xref "Illumina_V1:hmm36653-S"/db_xref > "OTTT:OTTHUMT00000057702"/db_xref > "shares_CDS_with_OTTT:BEX2-002"/db_xref > "shares_CDS_with_OTTT:BEX2-003"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057702"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057703"/translation > "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS > EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK > QLSHSLRAVSTDPPHHDHHDEFCLMP"mRNA join(complement(637337..637448), > complement(636799..636874),complement(635943..636422))/gene > "ENSG00000133134"/note "transcript_id=ENST00000372674"CDS > complement(636031..636417)/gene "ENSG00000133134"/protein_id > "ENSP00000361759"/note "transcript_id=ENST00000372674"/db_xref > "CCDS:CCDS14505.1"/db_xref "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref > "RefSeq_peptide:NP_116010.1"/db_xref "EntrezGene:BEX2"/db_xref > "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref > "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref > "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-003"/db_xref > "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref > "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref > "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref > "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref > "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref > "AFFY_HG_U133_Plus_2:224367_at"/db_xref > "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref > "AFFY_HuEx_1_0_st_v2:3985510"/db_xref > "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref > "Illumina_V1:hmm18828-S"/db_xref "OTTP:59451"/db_xref > "OTTP:OTTHUMP00000023736"/db_xref "OTTT:OTTHUMT00000057703"/db_xref > "shares_CDS_with_ENST:ENST00000372677"/translation > "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS > EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK > QLSHSLRAVSTDPPHHDHHDEFCLMP"gene 656670..658766/gene > ENSG00000182916/locus_tag "TCEAL7"/note "Transcription elongation > factor A protein-like 7 > (TCEA-like protein 7) (Transcription elongation factor S- > II protein-like 7). [Source:Uniprot/SWISSPROT;Acc:Q9BRU2]"mRNA > join(656670..656745,657418..657481,657818..658529)/gene > "ENSG00000182916"/note "transcript_id=ENST00000372666"CDS > 657845..658147/gene "ENSG00000182916"/protein_id > "ENSP00000361751"/note "transcript_id=ENST00000372666"/db_xref > "HGNC:TCEAL7"/db_xref "CCDS:CCDS14506.1"/db_xref > "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref > "RefSeq_peptide:NP_689491.1"/db_xref "RefSeq_dna:NM_152278"/db_xref > "EntrezGene:TCEAL7"/db_xref "AgilentCGH:A_14_P111438"/db_xref > "AgilentProbe:A_23_P125788"/db_xref "AgilentProbe:A_24_P49106"/db_xref > "EMBL:BC005988"/db_xref "EMBL:BC016786"/db_xref > "EMBL:Z92846"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref > "HGNC_curated_transcript:TCEAL7-002"/db_xref > "IPI:IPI00059712.1"/db_xref "protein_id:AAH05988.2"/db_xref > "protein_id:AAH16786.1"/db_xref "protein_id:CAI41965.1"/db_xref > "AFFY_HG_U133B:227705_at"/db_xref > "AFFY_HG_U133_Plus_2:227705_at"/db_xref > "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016444"/db_xref > "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref > "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref > "Illumina_V2:ILMN_13373"/db_xref "OTTP:59455"/db_xref > "OTTP:OTTHUMP00000023738"/db_xref "OTTT:OTTHUMT00000057705"/db_xref > "shares_CDS_with_ENST:ENST00000332431"/translation > "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS > LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"mRNA > join(656678..656745,657364..657481,657818..658766)/gene > "ENSG00000182916"/note "transcript_id=ENST00000332431"CDS > 657845..658147/gene "ENSG00000182916"/protein_id > "ENSP00000329794"/note "transcript_id=ENST00000332431"/db_xref > "CCDS:CCDS14506.1"/db_xref "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref > "RefSeq_peptide:NP_689491.1"/db_xref "EntrezGene:TCEAL7"/db_xref > "AgilentCGH:A_14_P111438"/db_xref "AgilentProbe:A_23_P125788"/db_xref > "AgilentProbe:A_24_P49106"/db_xref "EMBL:BC005988"/db_xref > "EMBL:BC016786"/db_xref "EMBL:Z92846"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL7-001"/db_xref > "IPI:IPI00059712.1"/db_xref "UniGene:Hs.602651"/db_xref > "protein_id:AAH05988.2"/db_xref "protein_id:AAH16786.1"/db_xref > "protein_id:CAI41965.1"/db_xref "AFFY_HG_U133B:227705_at"/db_xref > "AFFY_HG_U133_Plus_2:227705_at"/db_xref > "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016446"/db_xref > "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref > "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref > "Illumina_V2:ILMN_13373"/db_xref "OTTT:OTTHUMT00000057704"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057704"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057705"/db_xref > "shares_CDS_with_OTTT:TCEAL7-001"/db_xref > "shares_CDS_with_OTTT:TCEAL7-002"/translation > "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS > LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"gene > complement(673903..674170)/gene ENSG00000215026/locus_tag > "LL0XNC01-105G4.3"misc_RNA complement(673903..674170)/gene > "ENSG00000215026"/db_xref "Clone_based_vega_transcript:LL0XNC01-105G4.3- > 001"/db_xref "OTTT:OTTHUMT00000057708"/note > "processed_pseudogene"/note "transcript_id=ENST00000399456"gene > 682893..684892/gene ENSG00000185222/locus_tag "WBP5"/note "WW > domain-binding protein 5 (WBP-5). > [Source:Uniprot/SWISSPROT;Acc:Q9UHQ7]"mRNA > join(682893..683047,684056..684892)/gene "ENSG00000185222"/note > "transcript_id=ENST00000372656"CDS 684126..684440/gene > "ENSG00000185222"/protein_id "ENSP00000361740"/note > "transcript_id=ENST00000372656"/db_xref "HGNC:WBP5"/db_xref > "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref > "RefSeq_peptide:NP_001006613.1"/db_xref > "RefSeq_peptide:NP_001006614.1"/db_xref > "RefSeq_peptide:NP_001006615.1"/db_xref > "RefSeq_peptide:NP_057387.1"/db_xref "EntrezGene:WBP5"/db_xref > "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref > "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref > "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref > "HGNC_curated_transcript:WBP5-002"/db_xref "IPI:IPI00008434.1"/db_xref > "protein_id:AAF17229.1"/db_xref "protein_id:AAH23544.1"/db_xref > "protein_id:CAD12327.1"/db_xref "AFFY_HG_Focus:217975_at"/db_xref > "AFFY_HG_U133A:217975_at"/db_xref "AFFY_HG_U133A_2:217975_at"/db_xref > "AFFY_HG_U133_Plus_2:217975_at"/db_xref > "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016456"/db_xref > "AFFY_HuEx_1_0_st_v2:4016458"/db_xref > "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref > "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref > "OTTT:OTTHUMT00000057707"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057707"/db_xref > "shares_CDS_with_OTTT:WBP5-002"/translation > "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT > FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY > LM"mRNA join(682893..683047,683524..683602,684056..684892)/gene > "ENSG00000185222"/note "transcript_id=ENST00000372661"CDS > 684126..684440/gene "ENSG00000185222"/protein_id > "ENSP00000361745"/note "transcript_id=ENST00000372661"/db_xref > "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref > "RefSeq_peptide:NP_001006613.1"/db_xref > "RefSeq_peptide:NP_001006614.1"/db_xref > "RefSeq_peptide:NP_001006615.1"/db_xref > "RefSeq_peptide:NP_057387.1"/db_xref "RefSeq_dna:NM_001006612"/db_xref > "RefSeq_dna:NM_001006613"/db_xref "RefSeq_dna:NM_001006614"/db_xref > "RefSeq_dna:NM_016303"/db_xref "EntrezGene:WBP5"/db_xref > "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref > "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref > "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref > "GO:GO:0050699"/db_xref "HGNC_curated_transcript:WBP5-001"/db_xref > "IPI:IPI00008434.1"/db_xref "protein_id:AAF17229.1"/db_xref > "protein_id:AAH23544.1"/db_xref "protein_id:CAD12327.1"/db_xref > "AFFY_HG_Focus:217975_at"/db_xref "AFFY_HG_U133A:217975_at"/db_xref > "AFFY_HG_U133A_2:217975_at"/db_xref > "AFFY_HG_U133_Plus_2:217975_at"/db_xref > "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016456"/db_xref > "AFFY_HuEx_1_0_st_v2:4016458"/db_xref > "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref > "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref > "OTTT:OTTHUMT00000057706"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057706"/db_xref > "shares_CDS_with_OTTT:WBP5-001"/translation > "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT > FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY > LM"gene 702767..704518/gene ENSG00000166681/locus_tag > "NGFRAP1"/note "Protein BEX3 (Brain-expressed X-linked protein 3) > (p75NTR-associated cell death executor) (Nerve growth > factor receptor-associated protein 1) (Ovarian granulosa > cell 13.0 kDa protein HGR74). > [Source:Uniprot/SWISSPROT;Acc:Q00994]"mRNA > join(702767..703054,703469..703547,703904..704509)/gene > "ENSG00000166681"/note "transcript_id=ENST00000299872"CDS > 703963..704268/gene "ENSG00000166681"/protein_id > "ENSP00000299872"/note "transcript_id=ENST00000299872"/db_xref > "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref > "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref > "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref > "HGNC_automatic_transcript:NGFRAP1-201"/db_xref > "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "shares_CDS_with_OTTT:NGFRAP1-002"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057710"/translation > "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR > QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA > join(702767..703054,703469..703547,703904..704509)/gene > "ENSG00000166681"/note "transcript_id=ENST00000372645"CDS > 703933..704268/gene "ENSG00000166681"/protein_id > "ENSP00000361728"/note "transcript_id=ENST00000372645"/db_xref > "HGNC:NGFRAP1"/db_xref "CCDS:CCDS14508.1"/db_xref > "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref > "RefSeq_peptide:NP_055195.1"/db_xref > "RefSeq_peptide:NP_996798.1"/db_xref > "RefSeq_peptide:NP_996800.1"/db_xref "RefSeq_dna:NM_014380"/db_xref > "RefSeq_dna:NM_206915"/db_xref "EntrezGene:NGFRAP1"/db_xref > "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref > "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref > "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref > "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref > "GO:GO:0005123"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref > "GO:GO:0005829"/db_xref "GO:GO:0006915"/db_xref > "GO:GO:0006917"/db_xref "GO:GO:0007275"/db_xref > "GO:GO:0008625"/db_xref "GO:GO:0046872"/db_xref > "HGNC_curated_transcript:NGFRAP1-001"/db_xref > "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref > "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref > "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref > "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref > "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref > "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTT:OTTHUMT00000057709"/db_xref > "shares_CDS_with_OTTT:NGFRAP1-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057709"/translation > "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA > PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD > HHDEFCLMP"mRNA join(702781..703054,703469..703547,703951..704518)/gene > "ENSG00000166681"/note "transcript_id=ENST00000361298"CDS > 703963..704268/gene "ENSG00000166681"/protein_id > "ENSP00000354843"/note "transcript_id=ENST00000361298"/db_xref > "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref > "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref > "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref > "HGNC_curated_transcript:NGFRAP1-002"/db_xref > "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTP:59460"/db_xref "OTTP:OTTHUMP00000023742"/db_xref > "OTTT:OTTHUMT00000057710"/db_xref > "shares_CDS_with_ENST:ENST00000299872"/translation > "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR > QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA > join(702848..703054,703904..704501)/gene "ENSG00000166681"/note > "transcript_id=ENST00000372635"CDS 703933..704268/gene > "ENSG00000166681"/protein_id "ENSP00000361718"/note > "transcript_id=ENST00000372635"/db_xref "CCDS:CCDS14508.1"/db_xref > "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref > "RefSeq_peptide:NP_055195.1"/db_xref > "RefSeq_peptide:NP_996798.1"/db_xref > "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref > "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref > "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref > "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref > "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0006915"/db_xref > "GO:GO:0007275"/db_xref "GO:GO:0046872"/db_xref > "HGNC_curated_transcript:NGFRAP1-003"/db_xref > "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref > "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref > "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref > "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref > "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref > "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTP:59461"/db_xref "OTTP:OTTHUMP00000023743"/db_xref > "OTTT:OTTHUMT00000057711"/translation > "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA > PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD > HHDEFCLMP"mRNA join(703357..703547,703951..704512)/gene > "ENSG00000166681"/note "transcript_id=ENST00000372634"CDS > 703963..704268/gene "ENSG00000166681"/protein_id > "ENSP00000361717"/note "transcript_id=ENST00000372634"/db_xref > "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref > "RefSeq_dna:NM_206917"/db_xref "EntrezGene:NGFRAP1"/db_xref > "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref > "AgilentProbe:A_32_P27879"/db_xref > "HGNC_curated_transcript:NGFRAP1-004"/db_xref > "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTP:59462"/db_xref "OTTP:OTTHUMP00000023744"/db_xref > "OTTT:OTTHUMT00000057712"/translation > "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR > QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"gene > complement(826191..845930)/gene ENSG00000172476/locus_tag > "RAB40A"/note "Ras-related protein Rab-40A (SOCS box-containing > protein RAR2A) (Protein Rar-2). > [Source:Uniprot/SWISSPROT;Acc:Q8WXH6]"mRNA > complement(826191..829316)/gene "ENSG00000172476"/note > "transcript_id=ENST00000372633"CDS complement(826364..827197)/gene > "ENSG00000172476"/protein_id "ENSP00000361716"/note > "transcript_id=ENST00000372633"/db_xref "HGNC:RAB40A"/db_xref > "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref > "RefSeq_peptide:NP_543155.2"/db_xref "RefSeq_dna:NM_080879"/db_xref > "EntrezGene:RAB40A"/db_xref "AgilentCGH:A_14_P129520"/db_xref > "AgilentProbe:A_23_P259912"/db_xref > "AgilentProbe:A_32_P464296"/db_xref "AgilentProbe:A_32_P88719"/db_xref > "EMBL:AB232637"/db_xref "EMBL:AF132748"/db_xref > "EMBL:AF422143"/db_xref "EMBL:BC074854"/db_xref > "EMBL:BC074855"/db_xref "EMBL:BC113501"/db_xref > "EMBL:BC117232"/db_xref "EMBL:Z69733"/db_xref > "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref > "GO:GO:0005622"/db_xref "GO:GO:0005886"/db_xref > "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref > "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref > "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref > "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40A-002"/db_xref > "IPI:IPI00514509.4"/db_xref "UniGene:Hs.27453"/db_xref > "protein_id:AAH74854.1"/db_xref "protein_id:AAH74855.1"/db_xref > "protein_id:AAI13502.1"/db_xref "protein_id:AAI17233.1"/db_xref > "protein_id:AAL60514.1"/db_xref "protein_id:AAL75949.1"/db_xref > "protein_id:BAF02899.1"/db_xref "protein_id:CAI41993.1"/db_xref > "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref > "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A:217589_at"/db_xref > "AFFY_HG_U133A_2:215782_at"/db_xref > "AFFY_HG_U133A_2:217589_at"/db_xref > "AFFY_HG_U133_Plus_2:215782_at"/db_xref > "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref > "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref > "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref > "AFFY_HG_U95Av2:33477_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3985603"/db_xref > "AFFY_HuEx_1_0_st_v2:3985604"/db_xref > "AFFY_HuEx_1_0_st_v2:3985605"/db_xref > "AFFY_HuEx_1_0_st_v2:3985606"/db_xref > "AFFY_HuEx_1_0_st_v2:3985608"/db_xref > "AFFY_HuEx_1_0_st_v2:4016299"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref > "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref > "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V1:Hs.496523-S"/db_xref > "Illumina_V2:ILMN_123867"/db_xref "Illumina_V2:ILMN_20197"/db_xref > "OTTP:59465"/db_xref "OTTP:OTTHUMP00000023746"/db_xref > "OTTT:OTTHUMT00000057714"/translation > "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS > HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF > EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN > FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL > RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI > S"mRNA join(complement(845811..845930), > complement(843815..843966),complement(826195..827267))/gene > "ENSG00000172476"/note "transcript_id=ENST00000304236"CDS > complement(826364..827197)/gene "ENSG00000172476"/protein_id > "ENSP00000305648"/note "transcript_id=ENST00000304236"/db_xref > "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref > "RefSeq_peptide:NP_543155.2"/db_xref "EntrezGene:RAB40A"/db_xref > "AgilentCGH:A_14_P129520"/db_xref "AgilentProbe:A_23_P259912"/db_xref > "AgilentProbe:A_32_P88719"/db_xref "EMBL:AB232637"/db_xref > "EMBL:AF132748"/db_xref "EMBL:AF422143"/db_xref > "EMBL:BC074854"/db_xref "EMBL:BC074855"/db_xref > "EMBL:BC113501"/db_xref "EMBL:BC117232"/db_xref > "EMBL:Z69733"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref > "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref > "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref > "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref > "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref > "HGNC_curated_transcript:RAB40A-001"/db_xref > "IPI:IPI00514509.4"/db_xref "protein_id:AAH74854.1"/db_xref > "protein_id:AAH74855.1"/db_xref "protein_id:AAI13502.1"/db_xref > "protein_id:AAI17233.1"/db_xref "protein_id:AAL60514.1"/db_xref > "protein_id:AAL75949.1"/db_xref "protein_id:BAF02899.1"/db_xref > "protein_id:CAI41993.1"/db_xref "AFFY_HC_G110:107_at"/db_xref > "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref > "AFFY_HG_U133A:217589_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref > "AFFY_HG_U133A_2:217589_at"/db_xref > "AFFY_HG_U133_Plus_2:215782_at"/db_xref > "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref > "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref > "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref > "AFFY_HG_U95Av2:33477_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3985603"/db_xref > "AFFY_HuEx_1_0_st_v2:3985604"/db_xref > "AFFY_HuEx_1_0_st_v2:3985605"/db_xref > "AFFY_HuEx_1_0_st_v2:4016299"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref > "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref > "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V2:ILMN_20197"/db_xref > "OTTP:59464"/db_xref "OTTP:OTTHUMP00000023745"/db_xref > "OTTT:OTTHUMT00000057713"/db_xref > "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057713"/db_xref > "shares_CDS_and_UTR_with_OTTT:RAB40A-001"/translation > "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS > HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF > EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN > FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL > RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI > S"gene 902911..914166/gene ENSG00000133142/locus_tag "TCEAL4"/note > "Transcription elongation factor A protein-like 4 > (TCEA-like protein 4) (Transcription elongation factor S- > II protein-like 4). [Source:Uniprot/SWISSPROT;Acc:Q96EI5]"mRNA > join(902911..902973,903535..903654,912066..912201, > 912660..912742,913090..913956)/gene "ENSG00000133142"/note > "transcript_id=ENST00000372629"CDS > join(902911..902973,903535..903654,912066..912201, > 912660..912742,913090..913764)/gene > "ENSG00000133142"/protein_id "ENSP00000361712"/note > "transcript_id=ENST00000372629"/db_xref "HGNC:TCEAL4"/db_xref > "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref > "RefSeq_peptide:NP_001006936.1"/db_xref > "RefSeq_peptide:NP_001006937.1"/db_xref > "RefSeq_peptide:NP_001006938.1"/db_xref > "RefSeq_peptide:NP_079139.4"/db_xref > "Uniprot/Varsplic:Q96EI5-2"/db_xref "EntrezGene:TCEAL4"/db_xref > "AgilentCGH:A_14_P118508"/db_xref "AgilentCGH:A_14_P128392"/db_xref > "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref > "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref > "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL4-001"/db_xref > "IPI:IPI00647163.1"/db_xref "IPI:IPI00657999.3"/db_xref > "protein_id:AAG44794.1"/db_xref "protein_id:AAH12296.1"/db_xref > "protein_id:AAL40909.1"/db_xref "protein_id:BAB15023.1"/db_xref > "protein_id:CAI42031.1"/db_xref "AFFY_HG_U133A:202371_at"/db_xref > "AFFY_HG_U133A_2:202371_at"/db_xref > "AFFY_HG_U133_Plus_2:202371_at"/db_xref > "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016542"/db_xref > "AFFY_HuEx_1_0_st_v2:4016545"/db_xref > "AFFY_HuEx_1_0_st_v2:4016547"/db_xref > "AFFY_HuEx_1_0_st_v2:4016548"/db_xref > "AFFY_HuEx_1_0_st_v2:4016549"/db_xref > "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref > "Illumina_V1:GI_21361595-S"/db_xref "Illumina_V2:ILMN_15986"/db_xref > "Illumina_V2:ILMN_1896"/db_xref "OTTT:OTTHUMT00000252336"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000252336"/db_xref > "shares_CDS_with_OTTT:TCEAL4-001"/translation > "MPAGGQAPQLTPVIPAFWEARGLPNSKGRDKVHICQCEEWKGHI > SYVERDITTSEIKSLPQVSVRAFHAASGTLEWRKGNGYGRGKGWGWGRVESREAGPSV > DRDGGLRVCCSQRSAKPEKEEQPVQNPRRSVKDRKRRGNLDMEKLYSENEGMASNQGK > MENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGK > SEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKG > LAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFY > PRGPREFRGGCRAPRRDIEDIPYV"mRNA > join(911932..912065,912660..912732,913090..914166)/gene > "ENSG00000133142"/note "transcript_id=ENST00000395036"CDS > 913117..913764/gene "ENSG00000133142"/protein_id > "ENSP00000378477"/note "transcript_id=ENST00000395036"/db_xref > "CCDS:CCDS14510.2"/db_xref "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref > "RefSeq_peptide:NP_001006936.1"/db_xref > "RefSeq_peptide:NP_001006937.1"/db_xref > "RefSeq_peptide:NP_001006938.1"/db_xref > "RefSeq_peptide:NP_079139.4"/db_xref "RefSeq_dna:NM_001006935"/db_xref > "RefSeq_dna:NM_001006937"/db_xref "RefSeq_dna:NM_024863"/db_xref > "EntrezGene:TCEAL4"/db_xref "AgilentCGH:A_14_P128392"/db_xref > "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref > "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref > "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL4-201"/db_xref > "IPI:IPI00657999.3"/db_xref "protein_id:AAG44794.1"/db_xref > "protein_id:AAH12296.1"/db_xref "protein_id:AAL40909.1"/db_xref > "protein_id:BAB15023.1"/db_xref "protein_id:CAI42031.1"/db_xref > "AFFY_HG_U133A:202371_at"/db_xref "AFFY_HG_U133A_2:202371_at"/db_xref > "AFFY_HG_U133_Plus_2:202371_at"/db_xref > "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016538"/db_xref > "AFFY_HuEx_1_0_st_v2:4016540"/db_xref > "AFFY_HuEx_1_0_st_v2:4016541"/db_xref > "AFFY_HuEx_1_0_st_v2:4016545"/db_xref > "AFFY_HuEx_1_0_st_v2:4016547"/db_xref > "AFFY_HuEx_1_0_st_v2:4016548"/db_xref > "AFFY_HuEx_1_0_st_v2:4016549"/db_xref > "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref > "Illumina_V1:GI_21361595-S"/db_xref > "Illumina_V2:ILMN_1896"/translation > "MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENE > GKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPES > EGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFD > NMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV"gene > 933892..936368/gene ENSG00000196507/locus_tag "TCEAL3"/note > "Transcription elongation factor A protein-like 3 > (TCEA-like protein 3) (Transcription elongation factor S- > II protein-like 3). [Source:Uniprot/SWISSPROT;Acc:Q969E4]"mRNA > join(933892..934157,935045..935114,935484..936368)/gene > "ENSG00000196507"/note "transcript_id=ENST00000372628"CDS > 935506..936108/gene "ENSG00000196507"/protein_id > "ENSP00000361711"/note "transcript_id=ENST00000372628"/db_xref > "HGNC:TCEAL3"/db_xref "CCDS:CCDS14511.1"/db_xref > "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref > "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref > "RefSeq_peptide:NP_001006934.1"/db_xref > "RefSeq_peptide:NP_116315.1"/db_xref "RefSeq_dna:NM_001006933"/db_xref > "RefSeq_dna:NM_032926"/db_xref > "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref > "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref > "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref > "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref > "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-002"/db_xref > "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref > "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref > "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref > "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref > "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref > "AFFY_HG_U133B:227279_at"/db_xref > "AFFY_HG_U133_Plus_2:227279_at"/db_xref > "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref > "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref > "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref > "OTTP:59471"/db_xref "OTTP:OTTHUMP00000023758"/db_xref > "OTTT:OTTHUMT00000057737"/db_xref > "shares_CDS_with_ENST:ENST00000243286"/db_xref > "shares_CDS_with_ENST:ENST00000372627"/translation > "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC > EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA > EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG > GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA > join(934347..934511,935045..935114,935479..936367)/gene > "ENSG00000196507"/note "transcript_id=ENST00000243286"CDS > 935506..936108/gene "ENSG00000196507"/protein_id > "ENSP00000243286"/note "transcript_id=ENST00000243286"/db_xref > "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref > "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref > "RefSeq_peptide:NP_001006934.1"/db_xref > "RefSeq_peptide:NP_116315.1"/db_xref > "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref > "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref > "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref > "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref > "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL3-201"/db_xref > "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref > "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref > "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref > "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref > "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref > "AFFY_HG_U133B:227279_at"/db_xref > "AFFY_HG_U133_Plus_2:227279_at"/db_xref > "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref > "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref > "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref > "shares_CDS_with_OTTT:TCEAL3-001"/db_xref > "shares_CDS_with_OTTT:TCEAL3-002"/translation > "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC > EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA > EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG > GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA > join(934406..934499,935045..935114,935479..936367)/gene > "ENSG00000196507"/note "transcript_id=ENST00000372627"CDS > 935506..936108/gene "ENSG00000196507"/protein_id > "ENSP00000361710"/note "transcript_id=ENST00000372627"/db_xref > "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref > "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref > "RefSeq_peptide:NP_001006934.1"/db_xref > "RefSeq_peptide:NP_116315.1"/db_xref > "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref > "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref > "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref > "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref > "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-001"/db_xref > "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref > "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref > "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref > "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref > "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref > "AFFY_HG_U133B:227279_at"/db_xref > "AFFY_HG_U133_Plus_2:227279_at"/db_xref > "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref > "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref > "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref > "OTTT:OTTHUMT00000057736"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref > "shares_CDS_with_OTTT:TCEAL3-001"/db_xref > "shares_CDS_with_OTTT:TCEAL3-002"/translation > "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC > EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA > EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG > GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"gene 955161..957387/gene > ENSG00000172465/locus_tag "TCEAL1"/note "transcription elongation > factor A (SII)-like 1 > [Source:RefSeq_peptide;Acc:NP_001006641]"mRNA > join(955161..955234,955935..956002,956326..957387)/gene > "ENSG00000172465"/note "transcript_id=ENST00000372626"CDS > 956358..956837/gene "ENSG00000172465"/protein_id > "ENSP00000361709"/note "transcript_id=ENST00000372626"/db_xref > "HGNC:TCEAL1"/db_xref "CCDS:CCDS35358.1"/db_xref > "RefSeq_peptide:NP_001006640.1"/db_xref > "RefSeq_peptide:NP_001006641.1"/db_xref > "RefSeq_peptide:NP_004771.2"/db_xref "RefSeq_dna:NM_001006639"/db_xref > "RefSeq_dna:NM_001006640"/db_xref "RefSeq_dna:NM_004780"/db_xref > "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref > "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref > "AgilentProbe:A_32_P498070"/db_xref "GO:GO:0005515"/db_xref > "HGNC_curated_transcript:TCEAL1-001"/db_xref > "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref > "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref > "AFFY_HG_U133A_2:204045_at"/db_xref > "AFFY_HG_U133_Plus_2:204045_at"/db_xref > "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016567"/db_xref > "AFFY_HuEx_1_0_st_v2:4016569"/db_xref > "AFFY_HuGeneFL:M99701_at"/db_xref > "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref > "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref > "Illumina_V2:ILMN_23088"/db_xref "Illumina_V2:ILMN_28868"/db_xref > "OTTT:OTTHUMT00000058903"/db_xref "OTTT:OTTHUMT00000058904"/db_xref > "OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:TCEAL1-001"/db_xref > "shares_CDS_with_OTTT:TCEAL1-002"/db_xref > "shares_CDS_with_OTTT:TCEAL1-003"/translation > "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS > EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF > KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA > join(955405..955466,955935..956002,956326..957387)/gene > "ENSG00000172465"/note "transcript_id=ENST00000372624"CDS > 956358..956837/gene "ENSG00000172465"/protein_id > "ENSP00000361707"/note "transcript_id=ENST00000372624"/db_xref > "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref > "RefSeq_peptide:NP_001006641.1"/db_xref > "RefSeq_peptide:NP_004771.2"/db_xref > "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref > "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref > "AgilentProbe:A_32_P498070"/db_xref > "HGNC_automatic_transcript:TCEAL1-201"/db_xref > "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref > "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref > "AFFY_HG_U133A_2:204045_at"/db_xref > "AFFY_HG_U133_Plus_2:204045_at"/db_xref > "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016567"/db_xref > "AFFY_HuEx_1_0_st_v2:4016569"/db_xref > "AFFY_HuGeneFL:M99701_at"/db_xref > "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref > "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref > "Illumina_V2:ILMN_23088"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:TCEAL1-001"/db_xref > "shares_CDS_with_OTTT:TCEAL1-002"/db_xref > "shares_CDS_with_OTTT:TCEAL1-003"/translation > "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS > EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF > KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA > join(955405..955466,955935..956014,956326..957387)/gene > "ENSG00000172465"/note "transcript_id=ENST00000372625"CDS > 956358..956837/gene "ENSG00000172465"/protein_id > "ENSP00000361708"/note "transcript_id=ENST00000372625"/db_xref > "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref > "RefSeq_peptide:NP_001006641.1"/db_xref > "RefSeq_peptide:NP_004771.2"/db_xref > "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref > "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref > "HGNC_automatic_transcript:TCEAL1-202"/db_xref > "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref > "UniGene:Hs.95243"/db_xref "AFFY_HG_Focus:204045_at"/db_xref > "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref > "AFFY_HG_U133_Plus_2:204045_at"/db_xref > "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016567"/db_xref > "AFFY_HuEx_1_0_st_v2:4016569"/db_xref > "AFFY_HuGeneFL:M99701_at"/db_xref > "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref > "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref > "Illumina_V2:ILMN_23088"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:TCEAL1-001"/db_xref > "shares_CDS_with_OTTT:TCEAL1-002"/db_xref > "shares_CDS_with_OTTT:TCEAL1-003"/translation > "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS > EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF > KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"gene > complement(978174..978547)/gene ENSG00000180284/locus_tag > "AL049610.9"misc_RNA join(complement(978422..978547), > complement(978174..978419))/gene "ENSG00000180284"/db_xref > "AgilentProbe:A_24_P349428"/db_xref > "Clone_based_ensembl_transcri:AL049610.9-201"/db_xref > "UniGene:Hs.712229"/note "pseudogene"/note > "transcript_id=ENST00000312731"exon complement(5148..5254)/note > "exon_id=ENSE00001396941"exon 32225..32681/note > "exon_id=ENSE00001553787"exon 40223..40290/note > "exon_id=ENSE00001318862"exon 39571..39658/note > "exon_id=ENSE00001520517"exon 38853..38993/note > "exon_id=ENSE00001520520"exon 40978..44173/note > "exon_id=ENSE00001435544"exon 40630..40707/note > "exon_id=ENSE00001296863"exon 38617..38993/note > "exon_id=ENSE00001322878"exon 74258..74352/note > "exon_id=ENSE00001458492"exon 47398..47532/note > "exon_id=ENSE00001359890"exon 75140..79981/note > "exon_id=ENSE00001458491"exon 72535..72615/note > "exon_id=ENSE00001038238"exon 74026..74137/note > "exon_id=ENSE00001458493"exon 47167..47262/note > "exon_id=ENSE00001359898"exon 75140..78879/note > "exon_id=ENSE00001458499"exon 99642..99712/note > "exon_id=ENSE00001501273"exon 112108..113045/note > "exon_id=ENSE00001559133"exon 113050..113109/note > "exon_id=ENSE00001501266"exon 113185..113253/note > "exon_id=ENSE00001501264"exon 113254..113638/note > "exon_id=ENSE00001547725"exon 114269..114828/note > "exon_id=ENSE00001549427"exon 123275..123510/note > "exon_id=ENSE00001559090"exon 122692..122931/note > "exon_id=ENSE00001563701"exon complement(123532..123603)/note > "exon_id=ENSE00001501262"exon 123970..124556/note > "exon_id=ENSE00001557597"exon 124837..125403/note > "exon_id=ENSE00001550417"exon 125910..126001/note > "exon_id=ENSE00001552084"exon 126004..126327/note > "exon_id=ENSE00001549044"exon 126383..127532/note > "exon_id=ENSE00001556456"exon 127754..127840/note > "exon_id=ENSE00001562374"exon 127842..127907/note > "exon_id=ENSE00001501259"exon 129354..129411/note > "exon_id=ENSE00001501257"exon 129412..129481/note > "exon_id=ENSE00001501248"exon 129482..129726/note > "exon_id=ENSE00001554809"exon 131073..132579/note > "exon_id=ENSE00001556308"exon complement(132605..133087)/note > "exon_id=ENSE00001553181"exon 133182..134268/note > "exon_id=ENSE00001547959"exon complement(134334..134386)/note > "exon_id=ENSE00001501243"exon 135559..135629/note > "exon_id=ENSE00001501240"exon 136559..136627/note > "exon_id=ENSE00001501235"exon 263713..264741/note > "exon_id=ENSE00000675363"exon 333902..334513/note > "exon_id=ENSE00001556141"exon complement(389101..389720)/note > "exon_id=ENSE00001458479"exon complement(390537..390681)/note > "exon_id=ENSE00001105457"exon complement(390083..390172)/note > "exon_id=ENSE00001105455"exon complement(395306..395427)/note > "exon_id=ENSE00001564718"exon complement(419437..419535)/note > "exon_id=ENSE00001458464"exon complement(409839..409943)/note > "exon_id=ENSE00001322720"exon complement(404055..404187)/note > "exon_id=ENSE00001302178"exon complement(406454..406509)/note > "exon_id=ENSE00001293836"exon complement(402265..402441)/note > "exon_id=ENSE00001458442"exon complement(406025..406083)/note > "exon_id=ENSE00001314340"exon complement(405800..405915)/note > "exon_id=ENSE00001325188"exon complement(406204..406311)/note > "exon_id=ENSE00001313270"exon complement(410050..410133)/note > "exon_id=ENSE00001303810"exon complement(411156..411324)/note > "exon_id=ENSE00001327556"exon complement(419437..419540)/note > "exon_id=ENSE00001520502"exon complement(407017..407053)/note > "exon_id=ENSE00001322569"exon complement(409445..409514)/note > "exon_id=ENSE00001308091"exon complement(405001..405073)/note > "exon_id=ENSE00001293474"exon complement(406589..406657)/note > "exon_id=ENSE00001301210"exon complement(402682..402742)/note > "exon_id=ENSE00001327914"exon complement(409201..409289)/note > "exon_id=ENSE00001292623"exon complement(409634..409714)/note > "exon_id=ENSE00001291407"exon complement(410783..410936)/note > "exon_id=ENSE00001311406"exon complement(408696..408805)/note > "exon_id=ENSE00001309255"exon complement(405662..405704)/note > "exon_id=ENSE00000979224"exon 413637..415717/note > "exon_id=ENSE00001547073"exon complement(482560..482652)/note > "exon_id=ENSE00001438555"exon complement(532453..533340)/note > "exon_id=ENSE00001554209"exon 542590..543636/note > "exon_id=ENSE00001458417"exon 542123..542205/note > "exon_id=ENSE00000674092"exon 541565..541679/note > "exon_id=ENSE00001458401"exon 542590..543540/note > "exon_id=ENSE00001458400"exon complement(581519..581634)/note > "exon_id=ENSE00001520463"exon complement(579439..580458)/note > "exon_id=ENSE00001419203"exon complement(581046..581118)/note > "exon_id=ENSE00001263715"exon complement(580331..580420)/note > "exon_id=ENSE00001458382"exon complement(580100..580231)/note > "exon_id=ENSE00001458381"exon complement(585013..585759)/note > "exon_id=ENSE00001558162"exon complement(585929..586022)/note > "exon_id=ENSE00001556744"exon complement(600132..601031)/note > "exon_id=ENSE00001458378"exon complement(601716..601783)/note > "exon_id=ENSE00001458379"exon complement(603114..603313)/note > "exon_id=ENSE00001458380"exon complement(637301..637458)/note > "exon_id=ENSE00001458422"exon complement(637337..637448)/note > "exon_id=ENSE00001458367"exon complement(635795..636422)/note > "exon_id=ENSE00001458371"exon complement(636799..636874)/note > "exon_id=ENSE00001038555"exon complement(635943..636422)/note > "exon_id=ENSE00001458366"exon 657818..658766/note > "exon_id=ENSE00001325535"exon 657818..658529/note > "exon_id=ENSE00001458343"exon 657364..657481/note > "exon_id=ENSE00001305966"exon 657418..657481/note > "exon_id=ENSE00001458345"exon 656670..656745/note > "exon_id=ENSE00001458347"exon 656678..656745/note > "exon_id=ENSE00001291638"exon complement(673903..674170)/note > "exon_id=ENSE00001538428"exon 683524..683602/note > "exon_id=ENSE00001318428"exon 682893..683047/note > "exon_id=ENSE00001292620"exon 684056..684892/note > "exon_id=ENSE00001458330"exon 703951..704512/note > "exon_id=ENSE00001436496"exon 703357..703547/note > "exon_id=ENSE00001458275"exon 702848..703054/note > "exon_id=ENSE00001458277"exon 702781..703054/note > "exon_id=ENSE00001375610"exon 703951..704518/note > "exon_id=ENSE00001458290"exon 702767..703054/note > "exon_id=ENSE00001458297"exon 703469..703547/note > "exon_id=ENSE00001416044"exon 703904..704501/note > "exon_id=ENSE00001458276"exon 703904..704509/note > "exon_id=ENSE00001105579"exon complement(826191..829316)/note > "exon_id=ENSE00001458270"exon complement(845811..845930)/note > "exon_id=ENSE00001183586"exon complement(826195..827267)/note > "exon_id=ENSE00001173849"exon complement(843815..843966)/note > "exon_id=ENSE00001183584"exon 903535..903654/note > "exon_id=ENSE00001183544"exon 911932..912065/note > "exon_id=ENSE00001520388"exon 913090..913956/note > "exon_id=ENSE00001458264"exon 912660..912732/note > "exon_id=ENSE00001520387"exon 913090..914166/note > "exon_id=ENSE00001520386"exon 912660..912742/note > "exon_id=ENSE00001183536"exon 902911..902973/note > "exon_id=ENSE00001458265"exon 912066..912201/note > "exon_id=ENSE00001183538"exon 933892..934157/note > "exon_id=ENSE00001458260"exon 935484..936368/note > "exon_id=ENSE00001458259"exon 935479..936367/note > "exon_id=ENSE00000840307"exon 934406..934499/note > "exon_id=ENSE00001253340"exon 935045..935114/note > "exon_id=ENSE00001253332"exon 934347..934511/note > "exon_id=ENSE00001458257"exon 955405..955466/note > "exon_id=ENSE00001458249"exon 955161..955234/note > "exon_id=ENSE00001458252"exon 956326..957387/note > "exon_id=ENSE00001458247"exon 955935..956002/note > "exon_id=ENSE00001406936"exon 955935..956014/note > "exon_id=ENSE00001458248"exon complement(978174..978419)/note > "exon_id=ENSE00001250433"exon complement(978422..978547)/note > "exon_id=ENSE00001250442"STS complement(22038..22346)/standard_name > "SHGC-143390"/db_xref "UniSTS_NUM:185057"/db_xref > "UniSTS:SHGC-143390"/note "map_weight=1"STS > complement(43711..43868)/standard_name "RH78520"/db_xref > "UniSTS_NUM:73812"/db_xref "UniSTS:RH78520"/db_xref > "GM99-GB4:stSG41780"/note "map_weight=1"STS > complement(49890..50031)/standard_name "A008N06"/db_xref > "UniSTS_NUM:69104"/db_xref "UniSTS:A008N06"/note "map_weight=1"STS > complement(78623..78780)/standard_name "DXS7007E"/db_xref > "UniSTS_NUM:87907"/db_xref "UniSTS:DXS7007E"/db_xref > "WUSTL-X:sWXD2417"/note "map_weight=1"STS > complement(126684..126809)/standard_name "DXS7692"/db_xref > "UniSTS_NUM:22137"/db_xref "UniSTS:L41751"/db_xref > "UniSTS:DXS7692"/db_xref "WUSTL-X:sWXD1549"/note "map_weight=1"STS > complement(126736..126835)/standard_name "L47999"/db_xref > "UniSTS_NUM:32118"/db_xref "UniSTS:L47999"/db_xref > "WUSTL-X:sWXD1440"/note "map_weight=1"STS > complement(211742..211821)/standard_name "RH93084"/db_xref > "UniSTS_NUM:88543"/db_xref "UniSTS:RH93084"/db_xref > "GM99-GB4:stSG48268"/note "map_weight=1"STS > complement(238085..238337)/standard_name "REN69440"/db_xref > "UniSTS_NUM:394240"/db_xref "UniSTS:REN69440"/note "map_weight=3"STS > complement(265241..265340)/standard_name "WI-16593"/db_xref > "UniSTS_NUM:77493"/db_xref "UniSTS:T40480"/db_xref > "UniSTS:WI-16593"/note "map_weight=1"STS > complement(290665..290925)/standard_name "STS-N47340"/db_xref > "UniSTS_NUM:24198"/db_xref "UniSTS:STS-N47340"/note > "map_weight=1"STS complement(290723..290889)/standard_name > "RH45776"/db_xref "UniSTS_NUM:47099"/db_xref > "UniSTS:RH45776"/db_xref "GM99-GB4:stSG21435"/note "map_weight=1"STS > complement(331700..331780)/standard_name "L77850"/db_xref > "UniSTS_NUM:53608"/db_xref "UniSTS:L77850"/db_xref > "WUSTL-X:sWXD2841"/note "map_weight=1"STS > complement(389114..389226)/standard_name "RH18267"/db_xref > "UniSTS_NUM:60599"/db_xref "UniSTS:RH18267"/db_xref > "GM99-GB4:stSG9586"/note "map_weight=1"STS > complement(402304..402528)/standard_name "RH79750"/db_xref > "UniSTS_NUM:88517"/db_xref "UniSTS:RH79750"/db_xref > "GM99-GB4:sts-AA010600"/note "map_weight=1"STS > complement(402365..402517)/standard_name "RH102997"/db_xref > "UniSTS_NUM:97331"/db_xref "UniSTS:RH102997"/db_xref > "GM99-GB4:stSG54822"/note "map_weight=1"STS > complement(429978..430117)/standard_name "DXS8350"/db_xref > "UniSTS_NUM:80166"/db_xref "UniSTS:DXS8350"/db_xref > "UniSTS:L41954"/db_xref "WUSTL-X:sWXD1283"/note "map_weight=1"STS > complement(451418..451578)/standard_name "L77848"/db_xref > "UniSTS_NUM:23678"/db_xref "UniSTS:L77848"/db_xref > "WUSTL-X:sWXD2804"/note "map_weight=1"STS > complement(513264..513554)/standard_name "GDB:315297"/db_xref > "UniSTS_NUM:156514"/db_xref "UniSTS:GDB:315297"/note > "map_weight=1"STS complement(543431..543624)/standard_name > "RH80982"/db_xref "UniSTS_NUM:92748"/db_xref > "UniSTS:RH80982"/db_xref "GM99-GB4:sts-T59331"/note > "map_weight=1"STS complement(543471..543550)/standard_name > "RH46879"/db_xref "UniSTS_NUM:24442"/db_xref > "UniSTS:RH46879"/db_xref "GM99-GB4:stSG25760"/note "map_weight=1"STS > complement(579449..579628)/standard_name "RH35755"/db_xref > "UniSTS_NUM:71842"/db_xref "UniSTS:RH35755"/db_xref > "GM99-GB4:stSG1764"/note "map_weight=1"STS > complement(579510..579715)/standard_name "A002R41"/db_xref > "UniSTS_NUM:5253"/db_xref "UniSTS:A002R41"/note "map_weight=1"STS > complement(579804..579931)/standard_name "STS-R85811"/db_xref > "UniSTS_NUM:50348"/db_xref "UniSTS:STS-R85811"/note > "map_weight=1"STS complement(635821..635946)/standard_name > "WI-15922"/db_xref "UniSTS_NUM:62839"/db_xref > "UniSTS:WI-15922"/db_xref "UniSTS:G23964"/db_xref > "UniSTS:R43117"/note "map_weight=1"STS > complement(649415..649545)/standard_name "G22062"/db_xref > "UniSTS_NUM:66864"/db_xref "UniSTS:G22062"/note "map_weight=1"STS > complement(658543..658670)/standard_name "RH12449"/db_xref > "UniSTS_NUM:76451"/db_xref "UniSTS:RH12449"/db_xref > "GM99-GB4:stSG3774"/note "map_weight=1"STS > complement(684688..684818)/standard_name "A006A03"/db_xref > "UniSTS_NUM:41216"/db_xref "UniSTS:A006A03"/note "map_weight=1"STS > complement(684688..684818)/standard_name "G20641"/db_xref > "UniSTS_NUM:41217"/db_xref "UniSTS:G20641"/note "map_weight=1"STS > complement(703954..704452)/standard_name "141173"/db_xref > "UniSTS_NUM:141173"/note "map_weight=1"STS > complement(704257..704403)/standard_name "DXS6984E"/db_xref > "UniSTS_NUM:2498"/db_xref "UniSTS:DXS6984E"/db_xref > "GM99-GB4:stSG2932"/note "map_weight=1"STS > complement(704291..704471)/standard_name "STS-M38188"/db_xref > "UniSTS_NUM:60882"/db_xref "UniSTS:STS-M38188"/note > "map_weight=1"STS complement(704352..704489)/standard_name > "D5S2593"/db_xref "UniSTS_NUM:32572"/db_xref > "UniSTS:D5S2593"/db_xref "UniSTS:G13550"/note "map_weight=1"STS > complement(732457..732578)/standard_name "AL035140"/db_xref > "UniSTS_NUM:94651"/db_xref "UniSTS:AL035140"/note "map_weight=1"STS > complement(754777..754899)/standard_name "AL035146"/db_xref > "UniSTS_NUM:94658"/db_xref "UniSTS:AL035146"/note "map_weight=1"STS > complement(792227..792346)/standard_name "AF020181"/db_xref > "UniSTS_NUM:39479"/db_xref "UniSTS:AF020181"/db_xref > "WUSTL-X:sWXD3585"/note "map_weight=1"STS > complement(796966..797049)/standard_name "L77845"/db_xref > "UniSTS_NUM:57902"/db_xref "UniSTS:L77845"/db_xref > "WUSTL-X:sWXD2783"/note "map_weight=1"STS > complement(803577..803776)/standard_name "DXS1106"/db_xref > "UniSTS_NUM:30651"/db_xref "UniSTS:DXS1106"/db_xref > "GM99-GB4:AFM263we1"/db_xref "TNG:SHGC-1092"/note "map_weight=1"STS > complement(803580..803758)/standard_name "DXS1106"/db_xref > "UniSTS_NUM:63232"/db_xref "UniSTS:Z17276"/db_xref > "UniSTS:DXS1106"/db_xref "Genethon:AFM263we1"/db_xref > "WUSTL-X:sWXD672"/note "map_weight=1"STS > complement(804260..804395)/standard_name "AF020152"/db_xref > "UniSTS_NUM:45420"/db_xref "UniSTS:AF020152"/db_xref > "WUSTL-X:sWXD3586"/note "map_weight=1"STS > complement(853592..853826)/standard_name "DXS8096"/db_xref > "UniSTS_NUM:21236"/db_xref "UniSTS:DXS8096"/db_xref > "UniSTS:Z51652"/db_xref "GM99-G3:AFMa051tc5"/db_xref > "SHGC-G3:SHGC-21230"/note "map_weight=1"STS > complement(853592..853864)/standard_name "SHGC-150960"/db_xref > "UniSTS_NUM:173428"/db_xref "UniSTS:SHGC-150960"/note > "map_weight=1"STS complement(906210..906384)/standard_name > "AL008935"/db_xref "UniSTS_NUM:79896"/db_xref "UniSTS:AL008935"/note > "map_weight=1"STS complement(914019..914122)/standard_name > "STS-W88790"/db_xref "UniSTS_NUM:82788"/db_xref > "UniSTS:STS-W88790"/note "map_weight=1"STS > complement(914808..914927)/standard_name "SHGC-52701"/db_xref > "UniSTS_NUM:11495"/db_xref "UniSTS:SHGC-52701"/db_xref > "UniSTS:G36701"/note "map_weight=1"STS > complement(916610..916774)/standard_name "RH45868"/db_xref > "UniSTS_NUM:63171"/db_xref "UniSTS:RH45868"/db_xref > "GM99-GB4:stSG21595"/note "map_weight=1"STS > complement(936075..936201)/standard_name "RH78743"/db_xref > "UniSTS_NUM:4877"/db_xref "UniSTS:RH78743"/db_xref > "GM99-GB4:stSG42368"/note "map_weight=2"STS > complement(936198..936325)/standard_name "SHGC-34973"/db_xref > "UniSTS_NUM:23617"/db_xref "UniSTS:SHGC-34973"/db_xref > "UniSTS:G29704"/note "map_weight=1"STS > complement(939033..939162)/standard_name "RH17462"/db_xref > "UniSTS_NUM:41304"/db_xref "UniSTS:H03933"/db_xref > "UniSTS:RH17462"/note "map_weight=1"STS > complement(939050..939161)/standard_name "A005E02"/db_xref > "UniSTS_NUM:56778"/db_xref "UniSTS:G26235"/db_xref > "UniSTS:R62801"/db_xref "UniSTS:A005E02"/db_xref > "WI-RH:TIGR-A005E02"/note "map_weight=1"STS > complement(956876..956996)/standard_name "STS-M99701"/db_xref > "UniSTS_NUM:21153"/db_xref "UniSTS:STS-M99701"/note > "map_weight=1"STS complement(957185..957362)/standard_name > "RH80258"/db_xref "UniSTS_NUM:91622"/db_xref > "UniSTS:RH80258"/db_xref "GM99-GB4:sts-AA040895"/note > "map_weight=1"misc_feature 1..109496/note "contig > AL035427.17.1.161273 51778..161273(1)"misc_feature 109497..189301/note > "contig AL590407.8.1.81805 2001..81805(1)"misc_feature > 189302..225201/note "contig Z68871.2.1.37899 1..35900(-1)"misc_feature > 225202..230371/note "contig AL669904.1.1.5270 > 101..5270(1)"misc_feature 230372..267593/note "contig > Z95624.1.1.37322 1..37222(-1)"misc_feature 267594..267689/note > "contig AL645812.1.1.195 100..195(1)"misc_feature 267690..282719/note > "contig Z93943.1.1.15130 1..15030(-1)"misc_feature > 282720..327653/note "contig Z75895.1.1.45038 1..44934(-1)"misc_feature > 327654..365457/note "contig Z73361.1.1.40509 > 1..37804(-1)"misc_feature 365458..401071/note "contig > AL008708.4.1.35714 101..35714(1)"misc_feature 401072..438735/note > "contig Z75746.1.1.37764 1..37664(-1)"misc_feature 438736..478402/note > "contig Z85997.1.1.40600 1..39667(-1)"misc_feature > 478403..547950/note "contig AL035494.8.1.69648 > 101..69648(1)"misc_feature 547951..564664/note "contig > Z81014.1.1.16814 1..16714(-1)"misc_feature 564665..605385/note > "contig Z68694.1.1.40822 1..40721(-1)"misc_feature 605386..645869/note > "contig AL133348.8.1.40584 101..40584(1)"misc_feature > 645870..689721/note "contig Z92846.2.1.43952 > 101..43952(1)"misc_feature 689722..749434/note "contig > AL606763.6.1.61713 2001..61713(1)"misc_feature 749435..754942/note > "contig AL079333.8.1.7508 2001..7508(1)"misc_feature > 754943..807439/note "contig AL117327.5.1.52597 > 101..52597(1)"misc_feature 807440..848370/note "contig > Z69733.1.1.41031 1..40931(-1)"misc_feature 848371..875749/note > "contig AL035444.9.1.27479 101..27479(1)"misc_feature > 875750..897175/note "contig AL021308.1.1.21526 > 101..21526(1)"misc_feature 897176..939757/note "contig > Z73965.1.1.42686 1..42582(-1)"misc_feature 939758..944624/note > "contig Z68327.1.1.4968 1..4867(-1)"misc_feature 944625..1000000/note > "contig AL049610.9.1.100269 99..55474(1)" > Stack trace follows .... > > > at > org.biojavax.bio.seq.io.GenbankFormat.readRichSequence( > GenbankFormat.java:462) > at > org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) > ... 1 more > > > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > > > > > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From pzgyuanf at gmail.com Sat Nov 15 10:46:30 2008 From: pzgyuanf at gmail.com (pprun) Date: Sat, 15 Nov 2008 15:46:30 -0000 Subject: [Biojava-l] An Exception Has Occurred During Parsing ensembl Genbank file Homo_sapiens.0.dat In-Reply-To: References: <491EEA74.4080902@gmail.com> Message-ID: <491EEEC0.7090209@gmail.com> It is too large to send it by email, the exactly file name is: Homo_sapiens.0.dat The exception took place when first X Chr. sequence was encountered. Hope this can help a bit. - Pprun Richard Holland ??: > There are many files on that site. I need to know which specific one > you are working with so that I can also attempt to parse it with some > debugging options turned on. > > Could you attach the file you are using to an email if possible? > > cheers, > Richard > > > 2008/11/15 pprun : > >> Hi Richard, >> Did the original file you mean is the ensembl genbank file? >> If so, you can get it from ensembl website >> ftp://ftp.ensembl.org/pub/current_genbank/homo_sapiens/ >> >> >> >> Richard Holland ??: >> >> This exception occurs when the Genbank file contains a db_xref entry >> that does not follow the format "Type:Accession". >> >> It's hard to tell if this is the problem here without seeing the original >> file. >> >> cheers, >> Richard >> >> 2008/11/15 pprun : >> >> >> Environments: >> ------------- >> Biojava: 1.6 >> Java: 1.6.0_10; Java HotSpot(TM) Client VM 11.0-b15 >> System: Linux version 2.6.24-21-generic running on i386; UTF-8; zh_CN >> >> >> The detail: >> -------------- >> Format_object=org.biojavax.bio.seq.io.GenbankFormat >> Accession=chromosome:NCBI36:X:101815144:102815143:1 >> Id=null >> Comments=Bad dbxref >> Parse_block=FEATURES Location/Qualifierssource 1..1000000/organism >> "Homo sapiens"/db_xref "taxon:9606"gene complement(5148..5254)/gene >> ENSG00000193147/locus_tag "AL035427.17"misc_RNA >> complement(5148..5254)/gene "ENSG00000193147"/db_xref >> "Clone_based_ensembl_transcri:AL035427.17-201"/db_xref >> "RFAM:RF00026"/db_xref "AFFY_HuEx_1_0_st_v2:3985294"/note >> "snRNA"/note "transcript_id=ENST00000348857"gene 32225..32681/gene >> ENSG00000220050/locus_tag "RP4-769N13.2"misc_RNA 32225..32681/gene >> "ENSG00000220050"/db_xref "AgilentProbe:A_32_P940920"/db_xref >> "Clone_based_vega_transcript:RP4-769N13.2-001"/db_xref >> "OTTT:OTTHUMT00000057625"/note "processed_pseudogene"/note >> "transcript_id=ENST00000405532"gene 38617..44173/gene >> ENSG00000158301/locus_tag "GPRASP2"/note "G-protein coupled >> receptor-associated sorting >> protein 2 (GASP-2). [Source:Uniprot/SWISSPROT;Acc:Q96D09]"mRNA >> join(38617..38993,40223..40290,40630..40707,40978..44173)/gene >> "ENSG00000158301"/note "transcript_id=ENST00000332262"CDS >> 41311..43827/gene "ENSG00000158301"/protein_id >> "ENSP00000339057"/note "transcript_id=ENST00000332262"/db_xref >> "HGNC:GPRASP2"/db_xref "CCDS:CCDS14501.1"/db_xref >> "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref >> "RefSeq_peptide:NP_001004051.1"/db_xref >> "RefSeq_peptide:NP_612446.1"/db_xref >> "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref >> "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref >> "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref >> "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref >> "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_curated_transcript:GPRASP2-001"/db_xref >> "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref >> "UniGene:Hs.603154"/db_xref "protein_id:AAH13576.1"/db_xref >> "protein_id:AAH36772.1"/db_xref "protein_id:BAC04010.1"/db_xref >> "protein_id:BAC04692.1"/db_xref "protein_id:CAI43060.1"/db_xref >> "AFFY_HG_U133B:228027_at"/db_xref >> "AFFY_HG_U133_Plus_2:228027_at"/db_xref >> "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016236"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016243"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016244"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016261"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016262"/db_xref >> "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref >> "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref >> "Illumina_V2:ILMN_8313"/db_xref "OTTT:OTTHUMT00000057626"/db_xref >> "shares_CDS_with_OTTT:GPRASP2-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057626"/translation >> "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA >> TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA >> RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES >> GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA >> SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA >> YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF >> YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW >> AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG >> SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF >> RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE >> IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR >> SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV >> CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK >> MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL >> IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"mRNA >> join(38853..38993,39571..39658,40223..40290,40630..40707, >> 40978..44173)/gene "ENSG00000158301"/note >> "transcript_id=ENST00000340885"CDS 41311..43827/gene >> "ENSG00000158301"/protein_id "ENSP00000342986"/note >> "transcript_id=ENST00000340885"/db_xref "CCDS:CCDS14501.1"/db_xref >> "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref >> "RefSeq_peptide:NP_001004051.1"/db_xref >> "RefSeq_peptide:NP_612446.1"/db_xref "RefSeq_dna:NM_001004051"/db_xref >> "RefSeq_dna:NM_138437"/db_xref >> "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref >> "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref >> "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref >> "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref >> "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_automatic_transcript:GPRASP2-201"/db_xref >> "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref >> "UniGene:Hs.603154"/db_xref "UniGene:Hs.656888"/db_xref >> "protein_id:AAH13576.1"/db_xref "protein_id:AAH36772.1"/db_xref >> "protein_id:BAC04010.1"/db_xref "protein_id:BAC04692.1"/db_xref >> "protein_id:CAI43060.1"/db_xref "AFFY_HG_U133B:228027_at"/db_xref >> "AFFY_HG_U133_Plus_2:228027_at"/db_xref >> "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016244"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016261"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016262"/db_xref >> "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref >> "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref >> "Illumina_V2:ILMN_8313"/translation >> "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA >> TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA >> RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES >> GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA >> SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA >> YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF >> YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW >> AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG >> SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF >> RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE >> IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR >> SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV >> CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK >> MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL >> IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"gene 47167..79981/gene >> ENSG00000198908/locus_tag "BHLHB9"/note "Protein BHLHB9 (bHLHB9) >> (Transcription regulator of >> 60 kDa) (p60TRP). [Source:Uniprot/SWISSPROT;Acc:Q6PI77]"mRNA >> join(47167..47262,47398..47532,75140..78879)/gene >> "ENSG00000198908"/note "transcript_id=ENST00000372738"CDS >> 75437..77080/gene "ENSG00000198908"/protein_id >> "ENSP00000361823"/note "transcript_id=ENST00000372738"/db_xref >> "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref >> "RefSeq_peptide:NP_085142.1"/db_xref "RefSeq_dna:NM_030639"/db_xref >> "EntrezGene:BHLHB9"/db_xref "AgilentProbe:A_23_P308954"/db_xref >> "AgilentProbe:A_32_P348800"/db_xref >> "AgilentProbe:A_32_P796164"/db_xref >> "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref >> "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref >> "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref >> "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-002"/db_xref >> "IPI:IPI00513802.1"/db_xref "UniGene:Hs.4276"/db_xref >> "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref >> "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref >> "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref >> "AFFY_HG_U133A_2:213709_at"/db_xref >> "AFFY_HG_U133_Plus_2:213709_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3937803"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016264"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016266"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016274"/db_xref >> "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref >> "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref >> "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref >> "OTTT:OTTHUMT00000057631"/db_xref >> "shares_CDS_with_OTTT:BHLHB9-002"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057631"/translation >> "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA >> KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK >> NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK >> PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT >> IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ >> PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS >> TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP >> SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF >> HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA >> IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"mRNA >> join(47167..47262,47398..47532,75140..78879)/gene >> "ENSG00000198908"/note "transcript_id=ENST00000361229"CDS >> 75368..77080/gene "ENSG00000198908"/protein_id >> "ENSP00000354675"/note "transcript_id=ENST00000361229"/db_xref >> "HGNC:BHLHB9"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref >> "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref >> "AgilentProbe:A_23_P308954"/db_xref >> "AgilentProbe:A_32_P348800"/db_xref >> "AgilentProbe:A_32_P796164"/db_xref >> "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref >> "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref >> "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref >> "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_automatic_transcript:BHLHB9-201"/db_xref >> "IPI:IPI00513802.1"/db_xref "IPI:IPI00844393.1"/db_xref >> "UniGene:Hs.4276"/db_xref "protein_id:AAH41409.1"/db_xref >> "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref >> "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref >> "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref >> "AFFY_HG_U133_Plus_2:213709_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3937803"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016264"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016266"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016274"/db_xref >> "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref >> "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref >> "Illumina_V1:GI_39930462-S"/db_xref >> "Illumina_V2:ILMN_3098"/translation >> "DFDLGHIENQGQDWTGPYNWASTMAGTKNKTRAQAKTEKKAAIQ >> AKAGAEREATGVVRPVAKTRAKAKAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPK >> TLGKAMGDFTPKAGNESTSSTCKNEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKN >> DKPEIGAQVCAEELEPAAGADCKPRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSR >> IVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAE >> ENACSLPVATACRPSRNTRSCSQPIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFA >> CPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTL >> IESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLK >> ILGQLTTDFVHHYIVANYFSELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMK >> ALAALKLIFNQKEAKANLVSGVAIFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEI >> IETM"mRNA >> join(72535..72615,74026..74137,74258..74352,75140..79981)/gene >> "ENSG00000198908"/note "transcript_id=ENST00000372735"CDS >> 75437..77080/gene "ENSG00000198908"/protein_id >> "ENSP00000361820"/note "transcript_id=ENST00000372735"/db_xref >> "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref >> "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref >> "AgilentCGH:A_14_P200664"/db_xref "AgilentProbe:A_23_P308954"/db_xref >> "AgilentProbe:A_32_P348800"/db_xref >> "AgilentProbe:A_32_P796164"/db_xref >> "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref >> "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref >> "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref >> "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-001"/db_xref >> "IPI:IPI00513802.1"/db_xref "UniGene:Hs.603894"/db_xref >> "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref >> "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref >> "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref >> "AFFY_HG_U133A_2:213709_at"/db_xref >> "AFFY_HG_U133_Plus_2:213709_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3937803"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016224"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016270"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016274"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016276"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016277"/db_xref >> "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref >> "Codelink:GE54272"/db_xref "Codelink:GE822399"/db_xref >> "Illumina_V1:GI_14769619-S"/db_xref >> "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref >> "OTTP:59431"/db_xref "OTTP:OTTHUMP00000023715"/db_xref >> "OTTT:OTTHUMT00000057630"/translation >> "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA >> KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK >> NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK >> PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT >> IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ >> PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS >> TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP >> SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF >> HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA >> IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"gene 99642..99712/gene >> ENSG00000209002/locus_tag "AL035427.17"misc_RNA 99642..99712/gene >> "ENSG00000209002"/db_xref >> "Clone_based_ensembl_transcri:AL035427.17-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386267"gene >> 112108..113045/gene ENSG00000216245/locus_tag "RP11-522L3.1"misc_RNA >> 112108..113045/gene "ENSG00000216245"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.1-001"/db_xref >> "OTTT:OTTHUMT00000057652"/note "processed_pseudogene"/note >> "transcript_id=ENST00000404960"gene 113050..113109/gene >> ENSG00000208995/locus_tag "AL590407.8"misc_RNA 113050..113109/gene >> "ENSG00000208995"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386260"gene >> 113185..113253/gene ENSG00000208993/locus_tag "AL590407.8"misc_RNA >> 113185..113253/gene "ENSG00000208993"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386258"gene >> 113254..114828/gene ENSG00000218436/locus_tag "RP11-522L3.2"misc_RNA >> join(113254..113638,114269..114828)/gene "ENSG00000218436"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.2-001"/db_xref >> "OTTT:OTTHUMT00000057653"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403360"gene 122692..123510/gene >> ENSG00000220260/locus_tag "RP11-522L3.3"misc_RNA >> join(122692..122931,123275..123510)/gene "ENSG00000220260"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.3-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016279"/db_xref >> "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057654"/note >> "processed_pseudogene"/note "transcript_id=ENST00000407716"gene >> complement(123532..123603)/gene ENSG00000208991/locus_tag >> "AL590407.8"misc_RNA complement(123532..123603)/gene >> "ENSG00000208991"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386256"gene >> 123970..124556/gene ENSG00000219427/locus_tag "RP11-522L3.4"misc_RNA >> 123970..124556/gene "ENSG00000219427"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.4-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016279"/db_xref >> "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057655"/note >> "processed_pseudogene"/note "transcript_id=ENST00000406243"gene >> 124837..126001/gene ENSG00000218342/locus_tag "RP11-522L3.5"misc_RNA >> join(124837..125403,125910..126001)/gene "ENSG00000218342"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.5-001"/db_xref >> "OTTT:OTTHUMT00000057656"/note "processed_pseudogene"/note >> "transcript_id=ENST00000407350"gene 126004..126327/gene >> ENSG00000220461/locus_tag "RP11-522L3.6"misc_RNA 126004..126327/gene >> "ENSG00000220461"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.6-001"/db_xref >> "OTTT:OTTHUMT00000057657"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403529"gene 126383..127840/gene >> ENSG00000220086/locus_tag "RP11-522L3.7"misc_RNA >> join(126383..127532,127754..127840)/gene "ENSG00000220086"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.7-001"/db_xref >> "OTTT:OTTHUMT00000057648"/note "processed_pseudogene"/note >> "transcript_id=ENST00000405058"gene 127842..127907/gene >> ENSG00000208988/locus_tag "AL590407.8"misc_RNA 127842..127907/gene >> "ENSG00000208988"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386253"gene >> 129354..129411/gene ENSG00000208986/locus_tag "AL590407.8"misc_RNA >> 129354..129411/gene "ENSG00000208986"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref >> "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note >> "transcript_id=ENST00000386251"gene 129412..129481/gene >> ENSG00000208977/locus_tag "AL590407.8"misc_RNA 129412..129481/gene >> "ENSG00000208977"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref >> "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note >> "transcript_id=ENST00000386242"gene 129482..132579/gene >> ENSG00000216547/locus_tag "RP11-522L3.8"misc_RNA >> join(129482..129726,131073..132579)/gene "ENSG00000216547"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.8-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:2778904"/db_xref "OTTT:OTTHUMT00000057649"/note >> "processed_pseudogene"/note "transcript_id=ENST00000402841"gene >> complement(132605..133087)/gene ENSG00000217506/locus_tag >> "RP11-522L3.9"misc_RNA complement(132605..133087)/gene >> "ENSG00000217506"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.9-001"/db_xref >> "OTTT:OTTHUMT00000057650"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403019"gene 133182..134268/gene >> ENSG00000218097/locus_tag "RP11-522L3.11"misc_RNA >> 133182..134268/gene "ENSG00000218097"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.11-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016280"/db_xref >> "AFFY_HuGene_1_0_st_v1:8174199"/db_xref "OTTT:OTTHUMT00000057651"/note >> "processed_pseudogene"/note "transcript_id=ENST00000401627"gene >> complement(134334..134386)/gene ENSG00000208972/locus_tag >> "AL590407.8"misc_RNA complement(134334..134386)/gene >> "ENSG00000208972"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386237"gene >> 135559..135629/gene ENSG00000208969/locus_tag "AL590407.8"misc_RNA >> 135559..135629/gene "ENSG00000208969"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386234"gene >> 136559..136627/gene ENSG00000208964/locus_tag "AL590407.8"misc_RNA >> 136559..136627/gene "ENSG00000208964"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386229"gene >> 263713..264741/gene ENSG00000102128/locus_tag "RAB40AL"/note >> "Ras-related protein Rab-40A-like (Ras-like GTPase). >> [Source:Uniprot/SWISSPROT;Acc:P0C0E4]"mRNA 263713..264741/gene >> "ENSG00000102128"/note "transcript_id=ENST00000218249"CDS >> 263760..264596/gene "ENSG00000102128"/protein_id >> "ENSP00000218249"/note "transcript_id=ENST00000218249"/db_xref >> "HGNC:RAB40AL"/db_xref "CCDS:CCDS35353.1"/db_xref >> "Uniprot/SWISSPROT:RB40L_HUMAN"/db_xref >> "RefSeq_peptide:NP_001027004.1"/db_xref >> "RefSeq_dna:NM_001031834"/db_xref "EntrezGene:RAB40AL"/db_xref >> "AgilentProbe:A_32_P88717"/db_xref "AgilentProbe:A_32_P88719"/db_xref >> "EMBL:BC101169"/db_xref "EMBL:BC101170"/db_xref >> "EMBL:BC101171"/db_xref "EMBL:BC101172"/db_xref >> "EMBL:Z95624"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref >> "GO:GO:0005739"/db_xref "GO:GO:0005886"/db_xref >> "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref >> "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref >> "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref >> "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40AL-001"/db_xref >> "IPI:IPI00555763.1"/db_xref "MIM_GENE:300405"/db_xref >> "UniGene:Hs.449517"/db_xref "protein_id:AAI01170.1"/db_xref >> "protein_id:AAI01171.1"/db_xref "protein_id:AAI01172.1"/db_xref >> "protein_id:AAI01173.1"/db_xref "protein_id:CAB09136.1"/db_xref >> "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref >> "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref >> "AFFY_HG_U133_Plus_2:215782_at"/db_xref >> "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref >> "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref >> "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985604"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985605"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016299"/db_xref >> "AFFY_HuGeneFL:Z95624_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref >> "Illumina_V2:ILMN_24932"/db_xref "OTTT:OTTHUMT00000057679"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057679"/db_xref >> "shares_CDS_with_OTTT:RAB40AL-001"/translation >> "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYS >> HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF >> EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN >> FNIIESFTELARIVLLRHRLNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIAL >> RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCK >> IS"gene 333902..334513/gene ENSG00000219659/locus_tag >> "LL0XNC01-73E8.1"misc_RNA 333902..334513/gene >> "ENSG00000219659"/db_xref >> "Clone_based_vega_transcript:LL0XNC01-73E8.1-001"/db_xref >> "OTTT:OTTHUMT00000057683"/note "processed_pseudogene"/note >> "transcript_id=ENST00000406951"gene complement(389101..390681)/gene >> ENSG00000133169/locus_tag "BEX1"/note "Protein BEX1 (Brain-expressed >> X-linked protein 1). >> [Source:Uniprot/SWISSPROT;Acc:Q9HBH7]"mRNA >> join(complement(390537..390681), >> complement(390083..390172),complement(389101..389720))/gene >> "ENSG00000133169"/note "transcript_id=ENST00000372728"CDS >> complement(389338..389715)/gene "ENSG00000133169"/protein_id >> "ENSP00000361813"/note "transcript_id=ENST00000372728"/db_xref >> "HGNC:BEX1"/db_xref "CCDS:CCDS35354.1"/db_xref >> "Uniprot/SWISSPROT:BEX1_HUMAN"/db_xref >> "RefSeq_peptide:NP_060946.3"/db_xref "RefSeq_dna:NM_018476"/db_xref >> "EntrezGene:BEX1"/db_xref "AgilentProbe:A_23_P159952"/db_xref >> "AgilentProbe:A_32_P168503"/db_xref "EMBL:AF183416"/db_xref >> "EMBL:AF220189"/db_xref "EMBL:AF237783"/db_xref >> "EMBL:AK290958"/db_xref "EMBL:AL008708"/db_xref >> "EMBL:AY833561"/db_xref "EMBL:BC126427"/db_xref >> "EMBL:BC126429"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0007275"/db_xref >> "GO:GO:0007399"/db_xref "GO:GO:0030154"/db_xref >> "HGNC_curated_transcript:BEX1-001"/db_xref "IPI:IPI00020533.4"/db_xref >> "MIM_GENE:300690"/db_xref "protein_id:AAF67654.1"/db_xref >> "protein_id:AAG09685.1"/db_xref "protein_id:AAG09752.1"/db_xref >> "protein_id:AAI26428.1"/db_xref "protein_id:AAI26430.1"/db_xref >> "protein_id:AAX40679.1"/db_xref "protein_id:BAF83647.1"/db_xref >> "protein_id:CAI42418.1"/db_xref "AFFY_HG_U133A:218332_at"/db_xref >> "AFFY_HG_U133A_2:218332_at"/db_xref >> "AFFY_HG_U133_Plus_2:218332_at"/db_xref >> "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985407"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985408"/db_xref >> "AFFY_U133_X3P:g8923715_3p_at"/db_xref "Codelink:GE82387"/db_xref >> "Illumina_V1:GI_15147227-S"/db_xref "Illumina_V2:ILMN_23116"/db_xref >> "OTTT:OTTHUMT00000058925"/db_xref >> "shares_CDS_with_OTTT:BEX1-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058925"/translation >> "MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYC >> VPRGNRRRFRVRQPILQYRWDMMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLS >> HSLRAVSTDPPHHDHHDEFCLMP"gene complement(395306..395427)/gene >> ENSG00000221010/locus_tag "AL008708.4"misc_RNA >> complement(395306..395427)/gene "ENSG00000221010"/db_xref >> "Clone_based_ensembl_transcri:AL008708.4-201"/note "miRNA"/note >> "transcript_id=ENST00000408083"gene complement(402265..419540)/gene >> ENSG00000147206/locus_tag "NXF3"/note "Nuclear RNA export factor 3 >> (TAP-like protein 3) >> (TAPL-3). [Source:Uniprot/SWISSPROT;Acc:Q9H4D5]"mRNA >> join(complement(419437..419535), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402682..402742), >> complement(402265..402441))/gene "ENSG00000147206"/note >> "transcript_id=ENST00000395065"CDS join(complement(419437..419464), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402731..402742))/gene >> "ENSG00000147206"/protein_id "ENSP00000378504"/note >> "transcript_id=ENST00000395065"/db_xref "CCDS:CCDS14503.1"/db_xref >> "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref >> "RefSeq_peptide:NP_071335.1"/db_xref "RefSeq_dna:NM_022052"/db_xref >> "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref >> "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref >> "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref >> "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref >> "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref >> "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003729"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0006810"/db_xref >> "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref >> "HGNC_curated_transcript:NXF3-001"/db_xref "IPI:IPI00004930.5"/db_xref >> "IPI:IPI00552760.2"/db_xref "MIM_GENE:300316"/db_xref >> "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref >> "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref >> "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref >> "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref >> "AFFY_HG_U133A:220110_s_at"/db_xref >> "AFFY_HG_U133A_2:220110_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref >> "AFFY_HG_U95E:89668_at"/db_xref >> "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref >> "Illumina_V1:GI_11545756-S"/db_xref "Illumina_V2:ILMN_19573"/db_xref >> "OTTT:OTTHUMT00000057684"/db_xref >> "shares_CDS_with_OTTT:NXF3-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057684"/translation >> "MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSS >> SHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRME >> GNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENA >> SIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQ >> EALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPG >> EKCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGS >> FFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCK >> FFKDSRNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLC >> FSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFT >> LVPTAFSSSVPAFSQEQQKMLPS"mRNA join(complement(419437..419540), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402682..402742), >> complement(402265..402441))/gene "ENSG00000147206"/note >> "transcript_id=ENST00000372709"CDS join(complement(419437..419539), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402731..402742))/gene >> "ENSG00000147206"/protein_id "ENSP00000361794"/note >> "transcript_id=ENST00000372709"/db_xref "HGNC:NXF3"/db_xref >> "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref >> "RefSeq_peptide:NP_071335.1"/db_xref >> "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref >> "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref >> "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref >> "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref >> "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref >> "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003729"/db_xref "GO:GO:0003729"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0005737"/db_xref >> "GO:GO:0006810"/db_xref "GO:GO:0016973"/db_xref >> "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref >> "HGNC_automatic_transcript:NXF3-201"/db_xref >> "IPI:IPI00004930.5"/db_xref "IPI:IPI00552760.2"/db_xref >> "IPI:IPI00872823.1"/db_xref "MIM_GENE:300316"/db_xref >> "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref >> "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref >> "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref >> "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref >> "AFFY_HG_U133A:220110_s_at"/db_xref >> "AFFY_HG_U133A_2:220110_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref >> "AFFY_HG_U95E:89668_at"/db_xref >> "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref >> "Illumina_V1:GI_11545756-S"/db_xref >> "Illumina_V2:ILMN_19573"/translation >> "LNLLQTPVPRPHRFSSREPYKDIGKMSLPSGHTTGHTDQVVQRR >> ARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRK >> GSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQN >> ECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF >> VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASL >> DVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSILELFPKLLCL >> DGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSA >> YHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDIVDSLS >> ALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSS >> SLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS"gene >> 413637..415717/gene ENSG00000217368/locus_tag >> "LL0XNC01-221F2.2"misc_RNA 413637..415717/gene >> "ENSG00000217368"/db_xref "RefSeq_dna_predicted:XR_037041"/db_xref >> "RefSeq_dna_predicted:XR_037455"/db_xref >> "RefSeq_dna_predicted:XR_039021"/db_xref >> "Clone_based_vega_transcript:LL0XNC01-221F2.2- >> 001"/db_xref "AFFY_HuEx_1_0_st_v2:3588353"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016361"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016362"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016363"/db_xref >> "AFFY_U133_X3P:Hs.195728.0.A1_3p_at"/db_xref >> "OTTT:OTTHUMT00000057692"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403064"gene complement(482560..482652)/gene >> ENSG00000200662/locus_tag "AL035494.8"misc_RNA >> complement(482560..482652)/gene "ENSG00000200662"/db_xref >> "Clone_based_ensembl_transcri:AL035494.8-201"/db_xref >> "RFAM:RF00019"/note "misc_RNA"/note >> "transcript_id=ENST00000363792"gene complement(532453..533340)/gene >> ENSG00000220705/locus_tag "RP4-635G19.1"misc_RNA >> complement(532453..533340)/gene "ENSG00000220705"/db_xref >> "Clone_based_vega_transcript:RP4-635G19.1-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:2670016"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985483"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985484"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985485"/db_xref "OTTT:OTTHUMT00000057693"/note >> "processed_pseudogene"/note "transcript_id=ENST00000402296"gene >> 541565..543636/gene ENSG00000102409/locus_tag "BEX4"/note "Protein >> BEX4 (Brain-expressed X-linked protein 4) >> (BEX1-like 1) (Nerve growth factor receptor-associated >> protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NWD9]"mRNA >> join(541565..541679,542590..543540)/gene "ENSG00000102409"/note >> "transcript_id=ENST00000372691"CDS 542595..542957/gene >> "ENSG00000102409"/protein_id "ENSP00000361776"/note >> "transcript_id=ENST00000372691"/db_xref "HGNC:BEX4"/db_xref >> "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001073894.1"/db_xref "EntrezGene:BEX4"/db_xref >> "AgilentProbe:A_24_P40551"/db_xref "AgilentProbe:A_32_P156941"/db_xref >> "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref >> "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_curated_transcript:BEX4-002"/db_xref "IPI:IPI00739732.1"/db_xref >> "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref >> "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref >> "AFFY_HG_U133A:215440_s_at"/db_xref >> "AFFY_HG_U133A_2:215440_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref >> "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016383"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref >> "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref >> "Illumina_V2:ILMN_37437"/db_xref "OTTP:59442"/db_xref >> "OTTP:OTTHUMP00000023729"/db_xref >> "OTTT:OTTHUMT00000057695"/translation >> "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ >> KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY >> MRFQTPEPDNHYDFCLIP"mRNA >> join(541565..541679,542123..542205,542590..543636)/gene >> "ENSG00000102409"/note "transcript_id=ENST00000372695"CDS >> 542595..542957/gene "ENSG00000102409"/protein_id >> "ENSP00000361780"/note "transcript_id=ENST00000372695"/db_xref >> "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001073894.1"/db_xref >> "RefSeq_dna:NM_001080425"/db_xref >> "RefSeq_dna_predicted:XM_043653"/db_xref "EntrezGene:BEX4"/db_xref >> "AgilentProbe:A_23_P114391"/db_xref "AgilentProbe:A_24_P40551"/db_xref >> "AgilentProbe:A_32_P156941"/db_xref >> "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref >> "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_curated_transcript:BEX4-001"/db_xref "IPI:IPI00739732.1"/db_xref >> "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref >> "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref >> "AFFY_HG_U133A:215440_s_at"/db_xref >> "AFFY_HG_U133A_2:215440_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref >> "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016383"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref >> "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref >> "Illumina_V2:ILMN_37437"/db_xref "OTTT:OTTHUMT00000057694"/db_xref >> "shares_CDS_with_OTTT:BEX4-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057694"/translation >> "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ >> KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY >> MRFQTPEPDNHYDFCLIP"gene complement(579439..581634)/gene >> ENSG00000180964/locus_tag "TCEAL8"/note "Transcription elongation >> factor A protein-like 8 >> (TCEA-like protein 8) (Transcription elongation factor S- >> II protein-like 8). [Source:Uniprot/SWISSPROT;Acc:Q8IYN2]"mRNA >> join(complement(581519..581634), >> complement(579439..580458))/gene "ENSG00000180964"/note >> "transcript_id=ENST00000360000"CDS complement(580067..580420)/gene >> "ENSG00000180964"/protein_id "ENSP00000353093"/note >> "transcript_id=ENST00000360000"/db_xref "HGNC:TCEAL8"/db_xref >> "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006685.1"/db_xref >> "RefSeq_peptide:NP_699164.1"/db_xref "EntrezGene:TCEAL8"/db_xref >> "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref >> "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref >> "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref >> "HGNC_curated_transcript:TCEAL8-002"/db_xref >> "IPI:IPI00217810.1"/db_xref "UniGene:Hs.612731"/db_xref >> "protein_id:AAH35573.1"/db_xref "protein_id:CAI41979.1"/db_xref >> "AFFY_HG_U133B:224819_at"/db_xref >> "AFFY_HG_U133_Plus_2:224819_at"/db_xref >> "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985503"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985505"/db_xref >> "AFFY_U133_X3P:224819_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref >> "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref >> "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057699"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057699"/db_xref >> "shares_CDS_with_OTTT:TCEAL8-002"/translation >> "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ >> EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK >> QRHSRSRPYPVCFRP"mRNA join(complement(581519..581634), >> complement(581046..581118),complement(579439..580458))/gene >> "ENSG00000180964"/note "transcript_id=ENST00000372685"CDS >> complement(580067..580420)/gene "ENSG00000180964"/protein_id >> "ENSP00000361770"/note "transcript_id=ENST00000372685"/db_xref >> "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006685.1"/db_xref >> "RefSeq_peptide:NP_699164.1"/db_xref "RefSeq_dna:NM_001006684"/db_xref >> "RefSeq_dna:NM_153333"/db_xref "EntrezGene:TCEAL8"/db_xref >> "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref >> "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref >> "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref >> "HGNC_curated_transcript:TCEAL8-001"/db_xref >> "IPI:IPI00217810.1"/db_xref "protein_id:AAH35573.1"/db_xref >> "protein_id:CAI41979.1"/db_xref "AFFY_HG_U133B:224819_at"/db_xref >> "AFFY_HG_U133_Plus_2:224819_at"/db_xref >> "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985503"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985504"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985505"/db_xref >> "AFFY_U133_X3P:224819_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref >> "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref >> "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057698"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057698"/db_xref >> "shares_CDS_with_OTTT:TCEAL8-001"/translation >> "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ >> EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK >> QRHSRSRPYPVCFRP"mRNA join(complement(580331..580420), >> complement(580100..580231))/gene "ENSG00000180964"/note >> "transcript_id=ENST00000372681"CDS join(complement(580331..580420), >> complement(580100..580231))/gene "ENSG00000180964"/protein_id >> "ENSP00000361766"/note "transcript_id=ENST00000372681"/db_xref >> "Uniprot/SPTREMBL:Q5H9L1_HUMAN"/db_xref "EMBL:Z68694"/db_xref >> "GO:GO:0003746"/db_xref "HGNC_automatic_transcript:TCEAL8-201"/db_xref >> "IPI:IPI00640443.1"/db_xref "protein_id:CAI41978.1"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985503"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985504"/translation >> "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEDTPVRHLDPEEMIR >> GVDELERLREEIRRVRNKFVMMHWKQRHSR"gene complement(585013..586022)/gene >> ENSG00000219002/locus_tag "LL0XNC01-177E8.2"misc_RNA >> join(complement(585929..586022), >> complement(585013..585759))/gene "ENSG00000219002"/db_xref >> "Clone_based_vega_transcript:LL0XNC01-177E8.2- >> 001"/db_xref "OTTT:OTTHUMT00000057697"/note >> "processed_pseudogene"/note "transcript_id=ENST00000406148"gene >> complement(600132..603313)/gene ENSG00000204065/locus_tag >> "TCEAL5"/note "Transcription elongation factor A protein-like 5 >> (TCEA-like protein 5) (Transcription elongation factor S- >> II protein-like 5). [Source:Uniprot/SWISSPROT;Acc:Q5H9L2]"mRNA >> join(complement(603114..603313), >> complement(601716..601783),complement(600132..601031))/gene >> "ENSG00000204065"/note "transcript_id=ENST00000372680"CDS >> complement(600384..601004)/gene "ENSG00000204065"/protein_id >> "ENSP00000361765"/note "transcript_id=ENST00000372680"/db_xref >> "HGNC:TCEAL5"/db_xref "CCDS:CCDS35356.1"/db_xref >> "Uniprot/SWISSPROT:TCAL5_HUMAN"/db_xref >> "RefSeq_peptide:NP_001012997.1"/db_xref >> "RefSeq_dna:NM_001012979"/db_xref >> "Uniprot/SPTREMBL:A2RUJ4_HUMAN"/db_xref "EntrezGene:TCEAL5"/db_xref >> "AgilentProbe:A_23_P62399"/db_xref "AgilentProbe:A_32_P18470"/db_xref >> "EMBL:BC132922"/db_xref "EMBL:BC132924"/db_xref >> "EMBL:CH471190"/db_xref "EMBL:Z68694"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL5-001"/db_xref >> "IPI:IPI00257932.1"/db_xref "UniGene:Hs.403462"/db_xref >> "protein_id:AAI32923.1"/db_xref "protein_id:AAI32925.1"/db_xref >> "protein_id:CAI41976.1"/db_xref "protein_id:EAW54717.1"/db_xref >> "AFFY_HG_U95E:87383_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "Codelink:GE876309"/db_xref >> "Illumina_V1:GI_29744085-S"/db_xref "Illumina_V2:ILMN_10460"/db_xref >> "OTTP:59448"/db_xref "OTTP:OTTHUMP00000023730"/db_xref >> "OTTT:OTTHUMT00000057696"/db_xref >> "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057696"/db_xref >> "shares_CDS_and_UTR_with_OTTT:TCEAL5-001"/translation >> "MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDM >> EGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRA >> AEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELR >> KKQKMGGFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV"gene >> complement(635795..637458)/gene ENSG00000133134/locus_tag >> "BEX2"/note "Protein BEX2 (Brain-expressed X-linked protein 2) >> (hBex2). [Source:Uniprot/SWISSPROT;Acc:Q9BXY8]"mRNA >> join(complement(637301..637458), >> complement(636799..636874),complement(635795..636422))/gene >> "ENSG00000133134"/note "transcript_id=ENST00000372677"CDS >> complement(636031..636417)/gene "ENSG00000133134"/protein_id >> "ENSP00000361762"/note "transcript_id=ENST00000372677"/db_xref >> "HGNC:BEX2"/db_xref "CCDS:CCDS14505.1"/db_xref >> "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref >> "RefSeq_peptide:NP_116010.1"/db_xref "RefSeq_dna:NM_032621"/db_xref >> "EntrezGene:BEX2"/db_xref "AgilentProbe:A_23_P22735"/db_xref >> "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref >> "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref >> "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-002"/db_xref >> "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref >> "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref >> "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref >> "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref >> "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref >> "AFFY_HG_U133_Plus_2:224367_at"/db_xref >> "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985510"/db_xref >> "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref >> "Illumina_V1:hmm18828-S"/db_xref "Illumina_V1:hmm36653-S"/db_xref >> "OTTT:OTTHUMT00000057702"/db_xref >> "shares_CDS_with_OTTT:BEX2-002"/db_xref >> "shares_CDS_with_OTTT:BEX2-003"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057702"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057703"/translation >> "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS >> EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK >> QLSHSLRAVSTDPPHHDHHDEFCLMP"mRNA join(complement(637337..637448), >> complement(636799..636874),complement(635943..636422))/gene >> "ENSG00000133134"/note "transcript_id=ENST00000372674"CDS >> complement(636031..636417)/gene "ENSG00000133134"/protein_id >> "ENSP00000361759"/note "transcript_id=ENST00000372674"/db_xref >> "CCDS:CCDS14505.1"/db_xref "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref >> "RefSeq_peptide:NP_116010.1"/db_xref "EntrezGene:BEX2"/db_xref >> "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref >> "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref >> "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-003"/db_xref >> "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref >> "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref >> "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref >> "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref >> "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref >> "AFFY_HG_U133_Plus_2:224367_at"/db_xref >> "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985510"/db_xref >> "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref >> "Illumina_V1:hmm18828-S"/db_xref "OTTP:59451"/db_xref >> "OTTP:OTTHUMP00000023736"/db_xref "OTTT:OTTHUMT00000057703"/db_xref >> "shares_CDS_with_ENST:ENST00000372677"/translation >> "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS >> EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK >> QLSHSLRAVSTDPPHHDHHDEFCLMP"gene 656670..658766/gene >> ENSG00000182916/locus_tag "TCEAL7"/note "Transcription elongation >> factor A protein-like 7 >> (TCEA-like protein 7) (Transcription elongation factor S- >> II protein-like 7). [Source:Uniprot/SWISSPROT;Acc:Q9BRU2]"mRNA >> join(656670..656745,657418..657481,657818..658529)/gene >> "ENSG00000182916"/note "transcript_id=ENST00000372666"CDS >> 657845..658147/gene "ENSG00000182916"/protein_id >> "ENSP00000361751"/note "transcript_id=ENST00000372666"/db_xref >> "HGNC:TCEAL7"/db_xref "CCDS:CCDS14506.1"/db_xref >> "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref >> "RefSeq_peptide:NP_689491.1"/db_xref "RefSeq_dna:NM_152278"/db_xref >> "EntrezGene:TCEAL7"/db_xref "AgilentCGH:A_14_P111438"/db_xref >> "AgilentProbe:A_23_P125788"/db_xref "AgilentProbe:A_24_P49106"/db_xref >> "EMBL:BC005988"/db_xref "EMBL:BC016786"/db_xref >> "EMBL:Z92846"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref >> "HGNC_curated_transcript:TCEAL7-002"/db_xref >> "IPI:IPI00059712.1"/db_xref "protein_id:AAH05988.2"/db_xref >> "protein_id:AAH16786.1"/db_xref "protein_id:CAI41965.1"/db_xref >> "AFFY_HG_U133B:227705_at"/db_xref >> "AFFY_HG_U133_Plus_2:227705_at"/db_xref >> "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016444"/db_xref >> "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref >> "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref >> "Illumina_V2:ILMN_13373"/db_xref "OTTP:59455"/db_xref >> "OTTP:OTTHUMP00000023738"/db_xref "OTTT:OTTHUMT00000057705"/db_xref >> "shares_CDS_with_ENST:ENST00000332431"/translation >> "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS >> LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"mRNA >> join(656678..656745,657364..657481,657818..658766)/gene >> "ENSG00000182916"/note "transcript_id=ENST00000332431"CDS >> 657845..658147/gene "ENSG00000182916"/protein_id >> "ENSP00000329794"/note "transcript_id=ENST00000332431"/db_xref >> "CCDS:CCDS14506.1"/db_xref "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref >> "RefSeq_peptide:NP_689491.1"/db_xref "EntrezGene:TCEAL7"/db_xref >> "AgilentCGH:A_14_P111438"/db_xref "AgilentProbe:A_23_P125788"/db_xref >> "AgilentProbe:A_24_P49106"/db_xref "EMBL:BC005988"/db_xref >> "EMBL:BC016786"/db_xref "EMBL:Z92846"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL7-001"/db_xref >> "IPI:IPI00059712.1"/db_xref "UniGene:Hs.602651"/db_xref >> "protein_id:AAH05988.2"/db_xref "protein_id:AAH16786.1"/db_xref >> "protein_id:CAI41965.1"/db_xref "AFFY_HG_U133B:227705_at"/db_xref >> "AFFY_HG_U133_Plus_2:227705_at"/db_xref >> "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016446"/db_xref >> "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref >> "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref >> "Illumina_V2:ILMN_13373"/db_xref "OTTT:OTTHUMT00000057704"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057704"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057705"/db_xref >> "shares_CDS_with_OTTT:TCEAL7-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL7-002"/translation >> "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS >> LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"gene >> complement(673903..674170)/gene ENSG00000215026/locus_tag >> "LL0XNC01-105G4.3"misc_RNA complement(673903..674170)/gene >> "ENSG00000215026"/db_xref "Clone_based_vega_transcript:LL0XNC01-105G4.3- >> 001"/db_xref "OTTT:OTTHUMT00000057708"/note >> "processed_pseudogene"/note "transcript_id=ENST00000399456"gene >> 682893..684892/gene ENSG00000185222/locus_tag "WBP5"/note "WW >> domain-binding protein 5 (WBP-5). >> [Source:Uniprot/SWISSPROT;Acc:Q9UHQ7]"mRNA >> join(682893..683047,684056..684892)/gene "ENSG00000185222"/note >> "transcript_id=ENST00000372656"CDS 684126..684440/gene >> "ENSG00000185222"/protein_id "ENSP00000361740"/note >> "transcript_id=ENST00000372656"/db_xref "HGNC:WBP5"/db_xref >> "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006613.1"/db_xref >> "RefSeq_peptide:NP_001006614.1"/db_xref >> "RefSeq_peptide:NP_001006615.1"/db_xref >> "RefSeq_peptide:NP_057387.1"/db_xref "EntrezGene:WBP5"/db_xref >> "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref >> "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref >> "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref >> "HGNC_curated_transcript:WBP5-002"/db_xref "IPI:IPI00008434.1"/db_xref >> "protein_id:AAF17229.1"/db_xref "protein_id:AAH23544.1"/db_xref >> "protein_id:CAD12327.1"/db_xref "AFFY_HG_Focus:217975_at"/db_xref >> "AFFY_HG_U133A:217975_at"/db_xref "AFFY_HG_U133A_2:217975_at"/db_xref >> "AFFY_HG_U133_Plus_2:217975_at"/db_xref >> "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016456"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016458"/db_xref >> "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref >> "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref >> "OTTT:OTTHUMT00000057707"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057707"/db_xref >> "shares_CDS_with_OTTT:WBP5-002"/translation >> "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT >> FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY >> LM"mRNA join(682893..683047,683524..683602,684056..684892)/gene >> "ENSG00000185222"/note "transcript_id=ENST00000372661"CDS >> 684126..684440/gene "ENSG00000185222"/protein_id >> "ENSP00000361745"/note "transcript_id=ENST00000372661"/db_xref >> "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006613.1"/db_xref >> "RefSeq_peptide:NP_001006614.1"/db_xref >> "RefSeq_peptide:NP_001006615.1"/db_xref >> "RefSeq_peptide:NP_057387.1"/db_xref "RefSeq_dna:NM_001006612"/db_xref >> "RefSeq_dna:NM_001006613"/db_xref "RefSeq_dna:NM_001006614"/db_xref >> "RefSeq_dna:NM_016303"/db_xref "EntrezGene:WBP5"/db_xref >> "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref >> "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref >> "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref >> "GO:GO:0050699"/db_xref "HGNC_curated_transcript:WBP5-001"/db_xref >> "IPI:IPI00008434.1"/db_xref "protein_id:AAF17229.1"/db_xref >> "protein_id:AAH23544.1"/db_xref "protein_id:CAD12327.1"/db_xref >> "AFFY_HG_Focus:217975_at"/db_xref "AFFY_HG_U133A:217975_at"/db_xref >> "AFFY_HG_U133A_2:217975_at"/db_xref >> "AFFY_HG_U133_Plus_2:217975_at"/db_xref >> "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016456"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016458"/db_xref >> "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref >> "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref >> "OTTT:OTTHUMT00000057706"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057706"/db_xref >> "shares_CDS_with_OTTT:WBP5-001"/translation >> "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT >> FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY >> LM"gene 702767..704518/gene ENSG00000166681/locus_tag >> "NGFRAP1"/note "Protein BEX3 (Brain-expressed X-linked protein 3) >> (p75NTR-associated cell death executor) (Nerve growth >> factor receptor-associated protein 1) (Ovarian granulosa >> cell 13.0 kDa protein HGR74). >> [Source:Uniprot/SWISSPROT;Acc:Q00994]"mRNA >> join(702767..703054,703469..703547,703904..704509)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000299872"CDS >> 703963..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000299872"/note "transcript_id=ENST00000299872"/db_xref >> "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref >> "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref >> "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref >> "HGNC_automatic_transcript:NGFRAP1-201"/db_xref >> "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "shares_CDS_with_OTTT:NGFRAP1-002"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057710"/translation >> "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR >> QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA >> join(702767..703054,703469..703547,703904..704509)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000372645"CDS >> 703933..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000361728"/note "transcript_id=ENST00000372645"/db_xref >> "HGNC:NGFRAP1"/db_xref "CCDS:CCDS14508.1"/db_xref >> "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref >> "RefSeq_peptide:NP_055195.1"/db_xref >> "RefSeq_peptide:NP_996798.1"/db_xref >> "RefSeq_peptide:NP_996800.1"/db_xref "RefSeq_dna:NM_014380"/db_xref >> "RefSeq_dna:NM_206915"/db_xref "EntrezGene:NGFRAP1"/db_xref >> "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref >> "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref >> "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref >> "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref >> "GO:GO:0005123"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref >> "GO:GO:0005829"/db_xref "GO:GO:0006915"/db_xref >> "GO:GO:0006917"/db_xref "GO:GO:0007275"/db_xref >> "GO:GO:0008625"/db_xref "GO:GO:0046872"/db_xref >> "HGNC_curated_transcript:NGFRAP1-001"/db_xref >> "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref >> "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref >> "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref >> "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref >> "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref >> "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTT:OTTHUMT00000057709"/db_xref >> "shares_CDS_with_OTTT:NGFRAP1-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057709"/translation >> "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA >> PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD >> HHDEFCLMP"mRNA join(702781..703054,703469..703547,703951..704518)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000361298"CDS >> 703963..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000354843"/note "transcript_id=ENST00000361298"/db_xref >> "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref >> "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref >> "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref >> "HGNC_curated_transcript:NGFRAP1-002"/db_xref >> "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTP:59460"/db_xref "OTTP:OTTHUMP00000023742"/db_xref >> "OTTT:OTTHUMT00000057710"/db_xref >> "shares_CDS_with_ENST:ENST00000299872"/translation >> "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR >> QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA >> join(702848..703054,703904..704501)/gene "ENSG00000166681"/note >> "transcript_id=ENST00000372635"CDS 703933..704268/gene >> "ENSG00000166681"/protein_id "ENSP00000361718"/note >> "transcript_id=ENST00000372635"/db_xref "CCDS:CCDS14508.1"/db_xref >> "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref >> "RefSeq_peptide:NP_055195.1"/db_xref >> "RefSeq_peptide:NP_996798.1"/db_xref >> "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref >> "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref >> "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref >> "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref >> "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0006915"/db_xref >> "GO:GO:0007275"/db_xref "GO:GO:0046872"/db_xref >> "HGNC_curated_transcript:NGFRAP1-003"/db_xref >> "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref >> "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref >> "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref >> "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref >> "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref >> "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTP:59461"/db_xref "OTTP:OTTHUMP00000023743"/db_xref >> "OTTT:OTTHUMT00000057711"/translation >> "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA >> PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD >> HHDEFCLMP"mRNA join(703357..703547,703951..704512)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000372634"CDS >> 703963..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000361717"/note "transcript_id=ENST00000372634"/db_xref >> "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref >> "RefSeq_dna:NM_206917"/db_xref "EntrezGene:NGFRAP1"/db_xref >> "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref >> "AgilentProbe:A_32_P27879"/db_xref >> "HGNC_curated_transcript:NGFRAP1-004"/db_xref >> "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTP:59462"/db_xref "OTTP:OTTHUMP00000023744"/db_xref >> "OTTT:OTTHUMT00000057712"/translation >> "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR >> QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"gene >> complement(826191..845930)/gene ENSG00000172476/locus_tag >> "RAB40A"/note "Ras-related protein Rab-40A (SOCS box-containing >> protein RAR2A) (Protein Rar-2). >> [Source:Uniprot/SWISSPROT;Acc:Q8WXH6]"mRNA >> complement(826191..829316)/gene "ENSG00000172476"/note >> "transcript_id=ENST00000372633"CDS complement(826364..827197)/gene >> "ENSG00000172476"/protein_id "ENSP00000361716"/note >> "transcript_id=ENST00000372633"/db_xref "HGNC:RAB40A"/db_xref >> "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref >> "RefSeq_peptide:NP_543155.2"/db_xref "RefSeq_dna:NM_080879"/db_xref >> "EntrezGene:RAB40A"/db_xref "AgilentCGH:A_14_P129520"/db_xref >> "AgilentProbe:A_23_P259912"/db_xref >> "AgilentProbe:A_32_P464296"/db_xref "AgilentProbe:A_32_P88719"/db_xref >> "EMBL:AB232637"/db_xref "EMBL:AF132748"/db_xref >> "EMBL:AF422143"/db_xref "EMBL:BC074854"/db_xref >> "EMBL:BC074855"/db_xref "EMBL:BC113501"/db_xref >> "EMBL:BC117232"/db_xref "EMBL:Z69733"/db_xref >> "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref >> "GO:GO:0005622"/db_xref "GO:GO:0005886"/db_xref >> "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref >> "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref >> "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref >> "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40A-002"/db_xref >> "IPI:IPI00514509.4"/db_xref "UniGene:Hs.27453"/db_xref >> "protein_id:AAH74854.1"/db_xref "protein_id:AAH74855.1"/db_xref >> "protein_id:AAI13502.1"/db_xref "protein_id:AAI17233.1"/db_xref >> "protein_id:AAL60514.1"/db_xref "protein_id:AAL75949.1"/db_xref >> "protein_id:BAF02899.1"/db_xref "protein_id:CAI41993.1"/db_xref >> "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref >> "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A:217589_at"/db_xref >> "AFFY_HG_U133A_2:215782_at"/db_xref >> "AFFY_HG_U133A_2:217589_at"/db_xref >> "AFFY_HG_U133_Plus_2:215782_at"/db_xref >> "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref >> "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref >> "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref >> "AFFY_HG_U95Av2:33477_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985603"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985604"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985605"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985606"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985608"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016299"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref >> "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref >> "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V1:Hs.496523-S"/db_xref >> "Illumina_V2:ILMN_123867"/db_xref "Illumina_V2:ILMN_20197"/db_xref >> "OTTP:59465"/db_xref "OTTP:OTTHUMP00000023746"/db_xref >> "OTTT:OTTHUMT00000057714"/translation >> "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS >> HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF >> EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN >> FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL >> RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI >> S"mRNA join(complement(845811..845930), >> complement(843815..843966),complement(826195..827267))/gene >> "ENSG00000172476"/note "transcript_id=ENST00000304236"CDS >> complement(826364..827197)/gene "ENSG00000172476"/protein_id >> "ENSP00000305648"/note "transcript_id=ENST00000304236"/db_xref >> "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref >> "RefSeq_peptide:NP_543155.2"/db_xref "EntrezGene:RAB40A"/db_xref >> "AgilentCGH:A_14_P129520"/db_xref "AgilentProbe:A_23_P259912"/db_xref >> "AgilentProbe:A_32_P88719"/db_xref "EMBL:AB232637"/db_xref >> "EMBL:AF132748"/db_xref "EMBL:AF422143"/db_xref >> "EMBL:BC074854"/db_xref "EMBL:BC074855"/db_xref >> "EMBL:BC113501"/db_xref "EMBL:BC117232"/db_xref >> "EMBL:Z69733"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref >> "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref >> "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref >> "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref >> "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref >> "HGNC_curated_transcript:RAB40A-001"/db_xref >> "IPI:IPI00514509.4"/db_xref "protein_id:AAH74854.1"/db_xref >> "protein_id:AAH74855.1"/db_xref "protein_id:AAI13502.1"/db_xref >> "protein_id:AAI17233.1"/db_xref "protein_id:AAL60514.1"/db_xref >> "protein_id:AAL75949.1"/db_xref "protein_id:BAF02899.1"/db_xref >> "protein_id:CAI41993.1"/db_xref "AFFY_HC_G110:107_at"/db_xref >> "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref >> "AFFY_HG_U133A:217589_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref >> "AFFY_HG_U133A_2:217589_at"/db_xref >> "AFFY_HG_U133_Plus_2:215782_at"/db_xref >> "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref >> "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref >> "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref >> "AFFY_HG_U95Av2:33477_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985603"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985604"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985605"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016299"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref >> "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref >> "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V2:ILMN_20197"/db_xref >> "OTTP:59464"/db_xref "OTTP:OTTHUMP00000023745"/db_xref >> "OTTT:OTTHUMT00000057713"/db_xref >> "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057713"/db_xref >> "shares_CDS_and_UTR_with_OTTT:RAB40A-001"/translation >> "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS >> HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF >> EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN >> FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL >> RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI >> S"gene 902911..914166/gene ENSG00000133142/locus_tag "TCEAL4"/note >> "Transcription elongation factor A protein-like 4 >> (TCEA-like protein 4) (Transcription elongation factor S- >> II protein-like 4). [Source:Uniprot/SWISSPROT;Acc:Q96EI5]"mRNA >> join(902911..902973,903535..903654,912066..912201, >> 912660..912742,913090..913956)/gene "ENSG00000133142"/note >> "transcript_id=ENST00000372629"CDS >> join(902911..902973,903535..903654,912066..912201, >> 912660..912742,913090..913764)/gene >> "ENSG00000133142"/protein_id "ENSP00000361712"/note >> "transcript_id=ENST00000372629"/db_xref "HGNC:TCEAL4"/db_xref >> "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006936.1"/db_xref >> "RefSeq_peptide:NP_001006937.1"/db_xref >> "RefSeq_peptide:NP_001006938.1"/db_xref >> "RefSeq_peptide:NP_079139.4"/db_xref >> "Uniprot/Varsplic:Q96EI5-2"/db_xref "EntrezGene:TCEAL4"/db_xref >> "AgilentCGH:A_14_P118508"/db_xref "AgilentCGH:A_14_P128392"/db_xref >> "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref >> "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref >> "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL4-001"/db_xref >> "IPI:IPI00647163.1"/db_xref "IPI:IPI00657999.3"/db_xref >> "protein_id:AAG44794.1"/db_xref "protein_id:AAH12296.1"/db_xref >> "protein_id:AAL40909.1"/db_xref "protein_id:BAB15023.1"/db_xref >> "protein_id:CAI42031.1"/db_xref "AFFY_HG_U133A:202371_at"/db_xref >> "AFFY_HG_U133A_2:202371_at"/db_xref >> "AFFY_HG_U133_Plus_2:202371_at"/db_xref >> "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016542"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016545"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016547"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016548"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016549"/db_xref >> "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref >> "Illumina_V1:GI_21361595-S"/db_xref "Illumina_V2:ILMN_15986"/db_xref >> "Illumina_V2:ILMN_1896"/db_xref "OTTT:OTTHUMT00000252336"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000252336"/db_xref >> "shares_CDS_with_OTTT:TCEAL4-001"/translation >> "MPAGGQAPQLTPVIPAFWEARGLPNSKGRDKVHICQCEEWKGHI >> SYVERDITTSEIKSLPQVSVRAFHAASGTLEWRKGNGYGRGKGWGWGRVESREAGPSV >> DRDGGLRVCCSQRSAKPEKEEQPVQNPRRSVKDRKRRGNLDMEKLYSENEGMASNQGK >> MENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGK >> SEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKG >> LAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFY >> PRGPREFRGGCRAPRRDIEDIPYV"mRNA >> join(911932..912065,912660..912732,913090..914166)/gene >> "ENSG00000133142"/note "transcript_id=ENST00000395036"CDS >> 913117..913764/gene "ENSG00000133142"/protein_id >> "ENSP00000378477"/note "transcript_id=ENST00000395036"/db_xref >> "CCDS:CCDS14510.2"/db_xref "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006936.1"/db_xref >> "RefSeq_peptide:NP_001006937.1"/db_xref >> "RefSeq_peptide:NP_001006938.1"/db_xref >> "RefSeq_peptide:NP_079139.4"/db_xref "RefSeq_dna:NM_001006935"/db_xref >> "RefSeq_dna:NM_001006937"/db_xref "RefSeq_dna:NM_024863"/db_xref >> "EntrezGene:TCEAL4"/db_xref "AgilentCGH:A_14_P128392"/db_xref >> "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref >> "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref >> "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL4-201"/db_xref >> "IPI:IPI00657999.3"/db_xref "protein_id:AAG44794.1"/db_xref >> "protein_id:AAH12296.1"/db_xref "protein_id:AAL40909.1"/db_xref >> "protein_id:BAB15023.1"/db_xref "protein_id:CAI42031.1"/db_xref >> "AFFY_HG_U133A:202371_at"/db_xref "AFFY_HG_U133A_2:202371_at"/db_xref >> "AFFY_HG_U133_Plus_2:202371_at"/db_xref >> "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016538"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016540"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016541"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016545"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016547"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016548"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016549"/db_xref >> "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref >> "Illumina_V1:GI_21361595-S"/db_xref >> "Illumina_V2:ILMN_1896"/translation >> "MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENE >> GKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPES >> EGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFD >> NMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV"gene >> 933892..936368/gene ENSG00000196507/locus_tag "TCEAL3"/note >> "Transcription elongation factor A protein-like 3 >> (TCEA-like protein 3) (Transcription elongation factor S- >> II protein-like 3). [Source:Uniprot/SWISSPROT;Acc:Q969E4]"mRNA >> join(933892..934157,935045..935114,935484..936368)/gene >> "ENSG00000196507"/note "transcript_id=ENST00000372628"CDS >> 935506..936108/gene "ENSG00000196507"/protein_id >> "ENSP00000361711"/note "transcript_id=ENST00000372628"/db_xref >> "HGNC:TCEAL3"/db_xref "CCDS:CCDS14511.1"/db_xref >> "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref >> "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006934.1"/db_xref >> "RefSeq_peptide:NP_116315.1"/db_xref "RefSeq_dna:NM_001006933"/db_xref >> "RefSeq_dna:NM_032926"/db_xref >> "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref >> "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref >> "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref >> "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref >> "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-002"/db_xref >> "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref >> "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref >> "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref >> "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref >> "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref >> "AFFY_HG_U133B:227279_at"/db_xref >> "AFFY_HG_U133_Plus_2:227279_at"/db_xref >> "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref >> "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref >> "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref >> "OTTP:59471"/db_xref "OTTP:OTTHUMP00000023758"/db_xref >> "OTTT:OTTHUMT00000057737"/db_xref >> "shares_CDS_with_ENST:ENST00000243286"/db_xref >> "shares_CDS_with_ENST:ENST00000372627"/translation >> "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC >> EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA >> EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG >> GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA >> join(934347..934511,935045..935114,935479..936367)/gene >> "ENSG00000196507"/note "transcript_id=ENST00000243286"CDS >> 935506..936108/gene "ENSG00000196507"/protein_id >> "ENSP00000243286"/note "transcript_id=ENST00000243286"/db_xref >> "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref >> "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006934.1"/db_xref >> "RefSeq_peptide:NP_116315.1"/db_xref >> "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref >> "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref >> "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref >> "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref >> "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL3-201"/db_xref >> "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref >> "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref >> "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref >> "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref >> "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref >> "AFFY_HG_U133B:227279_at"/db_xref >> "AFFY_HG_U133_Plus_2:227279_at"/db_xref >> "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref >> "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref >> "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-002"/translation >> "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC >> EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA >> EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG >> GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA >> join(934406..934499,935045..935114,935479..936367)/gene >> "ENSG00000196507"/note "transcript_id=ENST00000372627"CDS >> 935506..936108/gene "ENSG00000196507"/protein_id >> "ENSP00000361710"/note "transcript_id=ENST00000372627"/db_xref >> "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref >> "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006934.1"/db_xref >> "RefSeq_peptide:NP_116315.1"/db_xref >> "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref >> "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref >> "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref >> "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref >> "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-001"/db_xref >> "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref >> "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref >> "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref >> "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref >> "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref >> "AFFY_HG_U133B:227279_at"/db_xref >> "AFFY_HG_U133_Plus_2:227279_at"/db_xref >> "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref >> "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref >> "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref >> "OTTT:OTTHUMT00000057736"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-002"/translation >> "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC >> EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA >> EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG >> GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"gene 955161..957387/gene >> ENSG00000172465/locus_tag "TCEAL1"/note "transcription elongation >> factor A (SII)-like 1 >> [Source:RefSeq_peptide;Acc:NP_001006641]"mRNA >> join(955161..955234,955935..956002,956326..957387)/gene >> "ENSG00000172465"/note "transcript_id=ENST00000372626"CDS >> 956358..956837/gene "ENSG00000172465"/protein_id >> "ENSP00000361709"/note "transcript_id=ENST00000372626"/db_xref >> "HGNC:TCEAL1"/db_xref "CCDS:CCDS35358.1"/db_xref >> "RefSeq_peptide:NP_001006640.1"/db_xref >> "RefSeq_peptide:NP_001006641.1"/db_xref >> "RefSeq_peptide:NP_004771.2"/db_xref "RefSeq_dna:NM_001006639"/db_xref >> "RefSeq_dna:NM_001006640"/db_xref "RefSeq_dna:NM_004780"/db_xref >> "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref >> "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref >> "AgilentProbe:A_32_P498070"/db_xref "GO:GO:0005515"/db_xref >> "HGNC_curated_transcript:TCEAL1-001"/db_xref >> "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref >> "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref >> "AFFY_HG_U133A_2:204045_at"/db_xref >> "AFFY_HG_U133_Plus_2:204045_at"/db_xref >> "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016567"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016569"/db_xref >> "AFFY_HuGeneFL:M99701_at"/db_xref >> "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref >> "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref >> "Illumina_V2:ILMN_23088"/db_xref "Illumina_V2:ILMN_28868"/db_xref >> "OTTT:OTTHUMT00000058903"/db_xref "OTTT:OTTHUMT00000058904"/db_xref >> "OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-002"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-003"/translation >> "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS >> EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF >> KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA >> join(955405..955466,955935..956002,956326..957387)/gene >> "ENSG00000172465"/note "transcript_id=ENST00000372624"CDS >> 956358..956837/gene "ENSG00000172465"/protein_id >> "ENSP00000361707"/note "transcript_id=ENST00000372624"/db_xref >> "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref >> "RefSeq_peptide:NP_001006641.1"/db_xref >> "RefSeq_peptide:NP_004771.2"/db_xref >> "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref >> "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref >> "AgilentProbe:A_32_P498070"/db_xref >> "HGNC_automatic_transcript:TCEAL1-201"/db_xref >> "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref >> "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref >> "AFFY_HG_U133A_2:204045_at"/db_xref >> "AFFY_HG_U133_Plus_2:204045_at"/db_xref >> "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016567"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016569"/db_xref >> "AFFY_HuGeneFL:M99701_at"/db_xref >> "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref >> "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref >> "Illumina_V2:ILMN_23088"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-002"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-003"/translation >> "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS >> EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF >> KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA >> join(955405..955466,955935..956014,956326..957387)/gene >> "ENSG00000172465"/note "transcript_id=ENST00000372625"CDS >> 956358..956837/gene "ENSG00000172465"/protein_id >> "ENSP00000361708"/note "transcript_id=ENST00000372625"/db_xref >> "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref >> "RefSeq_peptide:NP_001006641.1"/db_xref >> "RefSeq_peptide:NP_004771.2"/db_xref >> "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref >> "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref >> "HGNC_automatic_transcript:TCEAL1-202"/db_xref >> "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref >> "UniGene:Hs.95243"/db_xref "AFFY_HG_Focus:204045_at"/db_xref >> "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref >> "AFFY_HG_U133_Plus_2:204045_at"/db_xref >> "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016567"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016569"/db_xref >> "AFFY_HuGeneFL:M99701_at"/db_xref >> "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref >> "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref >> "Illumina_V2:ILMN_23088"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-002"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-003"/translation >> "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS >> EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF >> KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"gene >> complement(978174..978547)/gene ENSG00000180284/locus_tag >> "AL049610.9"misc_RNA join(complement(978422..978547), >> complement(978174..978419))/gene "ENSG00000180284"/db_xref >> "AgilentProbe:A_24_P349428"/db_xref >> "Clone_based_ensembl_transcri:AL049610.9-201"/db_xref >> "UniGene:Hs.712229"/note "pseudogene"/note >> "transcript_id=ENST00000312731"exon complement(5148..5254)/note >> "exon_id=ENSE00001396941"exon 32225..32681/note >> "exon_id=ENSE00001553787"exon 40223..40290/note >> "exon_id=ENSE00001318862"exon 39571..39658/note >> "exon_id=ENSE00001520517"exon 38853..38993/note >> "exon_id=ENSE00001520520"exon 40978..44173/note >> "exon_id=ENSE00001435544"exon 40630..40707/note >> "exon_id=ENSE00001296863"exon 38617..38993/note >> "exon_id=ENSE00001322878"exon 74258..74352/note >> "exon_id=ENSE00001458492"exon 47398..47532/note >> "exon_id=ENSE00001359890"exon 75140..79981/note >> "exon_id=ENSE00001458491"exon 72535..72615/note >> "exon_id=ENSE00001038238"exon 74026..74137/note >> "exon_id=ENSE00001458493"exon 47167..47262/note >> "exon_id=ENSE00001359898"exon 75140..78879/note >> "exon_id=ENSE00001458499"exon 99642..99712/note >> "exon_id=ENSE00001501273"exon 112108..113045/note >> "exon_id=ENSE00001559133"exon 113050..113109/note >> "exon_id=ENSE00001501266"exon 113185..113253/note >> "exon_id=ENSE00001501264"exon 113254..113638/note >> "exon_id=ENSE00001547725"exon 114269..114828/note >> "exon_id=ENSE00001549427"exon 123275..123510/note >> "exon_id=ENSE00001559090"exon 122692..122931/note >> "exon_id=ENSE00001563701"exon complement(123532..123603)/note >> "exon_id=ENSE00001501262"exon 123970..124556/note >> "exon_id=ENSE00001557597"exon 124837..125403/note >> "exon_id=ENSE00001550417"exon 125910..126001/note >> "exon_id=ENSE00001552084"exon 126004..126327/note >> "exon_id=ENSE00001549044"exon 126383..127532/note >> "exon_id=ENSE00001556456"exon 127754..127840/note >> "exon_id=ENSE00001562374"exon 127842..127907/note >> "exon_id=ENSE00001501259"exon 129354..129411/note >> "exon_id=ENSE00001501257"exon 129412..129481/note >> "exon_id=ENSE00001501248"exon 129482..129726/note >> "exon_id=ENSE00001554809"exon 131073..132579/note >> "exon_id=ENSE00001556308"exon complement(132605..133087)/note >> "exon_id=ENSE00001553181"exon 133182..134268/note >> "exon_id=ENSE00001547959"exon complement(134334..134386)/note >> "exon_id=ENSE00001501243"exon 135559..135629/note >> "exon_id=ENSE00001501240"exon 136559..136627/note >> "exon_id=ENSE00001501235"exon 263713..264741/note >> "exon_id=ENSE00000675363"exon 333902..334513/note >> "exon_id=ENSE00001556141"exon complement(389101..389720)/note >> "exon_id=ENSE00001458479"exon complement(390537..390681)/note >> "exon_id=ENSE00001105457"exon complement(390083..390172)/note >> "exon_id=ENSE00001105455"exon complement(395306..395427)/note >> "exon_id=ENSE00001564718"exon complement(419437..419535)/note >> "exon_id=ENSE00001458464"exon complement(409839..409943)/note >> "exon_id=ENSE00001322720"exon complement(404055..404187)/note >> "exon_id=ENSE00001302178"exon complement(406454..406509)/note >> "exon_id=ENSE00001293836"exon complement(402265..402441)/note >> "exon_id=ENSE00001458442"exon complement(406025..406083)/note >> "exon_id=ENSE00001314340"exon complement(405800..405915)/note >> "exon_id=ENSE00001325188"exon complement(406204..406311)/note >> "exon_id=ENSE00001313270"exon complement(410050..410133)/note >> "exon_id=ENSE00001303810"exon complement(411156..411324)/note >> "exon_id=ENSE00001327556"exon complement(419437..419540)/note >> "exon_id=ENSE00001520502"exon complement(407017..407053)/note >> "exon_id=ENSE00001322569"exon complement(409445..409514)/note >> "exon_id=ENSE00001308091"exon complement(405001..405073)/note >> "exon_id=ENSE00001293474"exon complement(406589..406657)/note >> "exon_id=ENSE00001301210"exon complement(402682..402742)/note >> "exon_id=ENSE00001327914"exon complement(409201..409289)/note >> "exon_id=ENSE00001292623"exon complement(409634..409714)/note >> "exon_id=ENSE00001291407"exon complement(410783..410936)/note >> "exon_id=ENSE00001311406"exon complement(408696..408805)/note >> "exon_id=ENSE00001309255"exon complement(405662..405704)/note >> "exon_id=ENSE00000979224"exon 413637..415717/note >> "exon_id=ENSE00001547073"exon complement(482560..482652)/note >> "exon_id=ENSE00001438555"exon complement(532453..533340)/note >> "exon_id=ENSE00001554209"exon 542590..543636/note >> "exon_id=ENSE00001458417"exon 542123..542205/note >> "exon_id=ENSE00000674092"exon 541565..541679/note >> "exon_id=ENSE00001458401"exon 542590..543540/note >> "exon_id=ENSE00001458400"exon complement(581519..581634)/note >> "exon_id=ENSE00001520463"exon complement(579439..580458)/note >> "exon_id=ENSE00001419203"exon complement(581046..581118)/note >> "exon_id=ENSE00001263715"exon complement(580331..580420)/note >> "exon_id=ENSE00001458382"exon complement(580100..580231)/note >> "exon_id=ENSE00001458381"exon complement(585013..585759)/note >> "exon_id=ENSE00001558162"exon complement(585929..586022)/note >> "exon_id=ENSE00001556744"exon complement(600132..601031)/note >> "exon_id=ENSE00001458378"exon complement(601716..601783)/note >> "exon_id=ENSE00001458379"exon complement(603114..603313)/note >> "exon_id=ENSE00001458380"exon complement(637301..637458)/note >> "exon_id=ENSE00001458422"exon complement(637337..637448)/note >> "exon_id=ENSE00001458367"exon complement(635795..636422)/note >> "exon_id=ENSE00001458371"exon complement(636799..636874)/note >> "exon_id=ENSE00001038555"exon complement(635943..636422)/note >> "exon_id=ENSE00001458366"exon 657818..658766/note >> "exon_id=ENSE00001325535"exon 657818..658529/note >> "exon_id=ENSE00001458343"exon 657364..657481/note >> "exon_id=ENSE00001305966"exon 657418..657481/note >> "exon_id=ENSE00001458345"exon 656670..656745/note >> "exon_id=ENSE00001458347"exon 656678..656745/note >> "exon_id=ENSE00001291638"exon complement(673903..674170)/note >> "exon_id=ENSE00001538428"exon 683524..683602/note >> "exon_id=ENSE00001318428"exon 682893..683047/note >> "exon_id=ENSE00001292620"exon 684056..684892/note >> "exon_id=ENSE00001458330"exon 703951..704512/note >> "exon_id=ENSE00001436496"exon 703357..703547/note >> "exon_id=ENSE00001458275"exon 702848..703054/note >> "exon_id=ENSE00001458277"exon 702781..703054/note >> "exon_id=ENSE00001375610"exon 703951..704518/note >> "exon_id=ENSE00001458290"exon 702767..703054/note >> "exon_id=ENSE00001458297"exon 703469..703547/note >> "exon_id=ENSE00001416044"exon 703904..704501/note >> "exon_id=ENSE00001458276"exon 703904..704509/note >> "exon_id=ENSE00001105579"exon complement(826191..829316)/note >> "exon_id=ENSE00001458270"exon complement(845811..845930)/note >> "exon_id=ENSE00001183586"exon complement(826195..827267)/note >> "exon_id=ENSE00001173849"exon complement(843815..843966)/note >> "exon_id=ENSE00001183584"exon 903535..903654/note >> "exon_id=ENSE00001183544"exon 911932..912065/note >> "exon_id=ENSE00001520388"exon 913090..913956/note >> "exon_id=ENSE00001458264"exon 912660..912732/note >> "exon_id=ENSE00001520387"exon 913090..914166/note >> "exon_id=ENSE00001520386"exon 912660..912742/note >> "exon_id=ENSE00001183536"exon 902911..902973/note >> "exon_id=ENSE00001458265"exon 912066..912201/note >> "exon_id=ENSE00001183538"exon 933892..934157/note >> "exon_id=ENSE00001458260"exon 935484..936368/note >> "exon_id=ENSE00001458259"exon 935479..936367/note >> "exon_id=ENSE00000840307"exon 934406..934499/note >> "exon_id=ENSE00001253340"exon 935045..935114/note >> "exon_id=ENSE00001253332"exon 934347..934511/note >> "exon_id=ENSE00001458257"exon 955405..955466/note >> "exon_id=ENSE00001458249"exon 955161..955234/note >> "exon_id=ENSE00001458252"exon 956326..957387/note >> "exon_id=ENSE00001458247"exon 955935..956002/note >> "exon_id=ENSE00001406936"exon 955935..956014/note >> "exon_id=ENSE00001458248"exon complement(978174..978419)/note >> "exon_id=ENSE00001250433"exon complement(978422..978547)/note >> "exon_id=ENSE00001250442"STS complement(22038..22346)/standard_name >> "SHGC-143390"/db_xref "UniSTS_NUM:185057"/db_xref >> "UniSTS:SHGC-143390"/note "map_weight=1"STS >> complement(43711..43868)/standard_name "RH78520"/db_xref >> "UniSTS_NUM:73812"/db_xref "UniSTS:RH78520"/db_xref >> "GM99-GB4:stSG41780"/note "map_weight=1"STS >> complement(49890..50031)/standard_name "A008N06"/db_xref >> "UniSTS_NUM:69104"/db_xref "UniSTS:A008N06"/note "map_weight=1"STS >> complement(78623..78780)/standard_name "DXS7007E"/db_xref >> "UniSTS_NUM:87907"/db_xref "UniSTS:DXS7007E"/db_xref >> "WUSTL-X:sWXD2417"/note "map_weight=1"STS >> complement(126684..126809)/standard_name "DXS7692"/db_xref >> "UniSTS_NUM:22137"/db_xref "UniSTS:L41751"/db_xref >> "UniSTS:DXS7692"/db_xref "WUSTL-X:sWXD1549"/note "map_weight=1"STS >> complement(126736..126835)/standard_name "L47999"/db_xref >> "UniSTS_NUM:32118"/db_xref "UniSTS:L47999"/db_xref >> "WUSTL-X:sWXD1440"/note "map_weight=1"STS >> complement(211742..211821)/standard_name "RH93084"/db_xref >> "UniSTS_NUM:88543"/db_xref "UniSTS:RH93084"/db_xref >> "GM99-GB4:stSG48268"/note "map_weight=1"STS >> complement(238085..238337)/standard_name "REN69440"/db_xref >> "UniSTS_NUM:394240"/db_xref "UniSTS:REN69440"/note "map_weight=3"STS >> complement(265241..265340)/standard_name "WI-16593"/db_xref >> "UniSTS_NUM:77493"/db_xref "UniSTS:T40480"/db_xref >> "UniSTS:WI-16593"/note "map_weight=1"STS >> complement(290665..290925)/standard_name "STS-N47340"/db_xref >> "UniSTS_NUM:24198"/db_xref "UniSTS:STS-N47340"/note >> "map_weight=1"STS complement(290723..290889)/standard_name >> "RH45776"/db_xref "UniSTS_NUM:47099"/db_xref >> "UniSTS:RH45776"/db_xref "GM99-GB4:stSG21435"/note "map_weight=1"STS >> complement(331700..331780)/standard_name "L77850"/db_xref >> "UniSTS_NUM:53608"/db_xref "UniSTS:L77850"/db_xref >> "WUSTL-X:sWXD2841"/note "map_weight=1"STS >> complement(389114..389226)/standard_name "RH18267"/db_xref >> "UniSTS_NUM:60599"/db_xref "UniSTS:RH18267"/db_xref >> "GM99-GB4:stSG9586"/note "map_weight=1"STS >> complement(402304..402528)/standard_name "RH79750"/db_xref >> "UniSTS_NUM:88517"/db_xref "UniSTS:RH79750"/db_xref >> "GM99-GB4:sts-AA010600"/note "map_weight=1"STS >> complement(402365..402517)/standard_name "RH102997"/db_xref >> "UniSTS_NUM:97331"/db_xref "UniSTS:RH102997"/db_xref >> "GM99-GB4:stSG54822"/note "map_weight=1"STS >> complement(429978..430117)/standard_name "DXS8350"/db_xref >> "UniSTS_NUM:80166"/db_xref "UniSTS:DXS8350"/db_xref >> "UniSTS:L41954"/db_xref "WUSTL-X:sWXD1283"/note "map_weight=1"STS >> complement(451418..451578)/standard_name "L77848"/db_xref >> "UniSTS_NUM:23678"/db_xref "UniSTS:L77848"/db_xref >> "WUSTL-X:sWXD2804"/note "map_weight=1"STS >> complement(513264..513554)/standard_name "GDB:315297"/db_xref >> "UniSTS_NUM:156514"/db_xref "UniSTS:GDB:315297"/note >> "map_weight=1"STS complement(543431..543624)/standard_name >> "RH80982"/db_xref "UniSTS_NUM:92748"/db_xref >> "UniSTS:RH80982"/db_xref "GM99-GB4:sts-T59331"/note >> "map_weight=1"STS complement(543471..543550)/standard_name >> "RH46879"/db_xref "UniSTS_NUM:24442"/db_xref >> "UniSTS:RH46879"/db_xref "GM99-GB4:stSG25760"/note "map_weight=1"STS >> complement(579449..579628)/standard_name "RH35755"/db_xref >> "UniSTS_NUM:71842"/db_xref "UniSTS:RH35755"/db_xref >> "GM99-GB4:stSG1764"/note "map_weight=1"STS >> complement(579510..579715)/standard_name "A002R41"/db_xref >> "UniSTS_NUM:5253"/db_xref "UniSTS:A002R41"/note "map_weight=1"STS >> complement(579804..579931)/standard_name "STS-R85811"/db_xref >> "UniSTS_NUM:50348"/db_xref "UniSTS:STS-R85811"/note >> "map_weight=1"STS complement(635821..635946)/standard_name >> "WI-15922"/db_xref "UniSTS_NUM:62839"/db_xref >> "UniSTS:WI-15922"/db_xref "UniSTS:G23964"/db_xref >> "UniSTS:R43117"/note "map_weight=1"STS >> complement(649415..649545)/standard_name "G22062"/db_xref >> "UniSTS_NUM:66864"/db_xref "UniSTS:G22062"/note "map_weight=1"STS >> complement(658543..658670)/standard_name "RH12449"/db_xref >> "UniSTS_NUM:76451"/db_xref "UniSTS:RH12449"/db_xref >> "GM99-GB4:stSG3774"/note "map_weight=1"STS >> complement(684688..684818)/standard_name "A006A03"/db_xref >> "UniSTS_NUM:41216"/db_xref "UniSTS:A006A03"/note "map_weight=1"STS >> complement(684688..684818)/standard_name "G20641"/db_xref >> "UniSTS_NUM:41217"/db_xref "UniSTS:G20641"/note "map_weight=1"STS >> complement(703954..704452)/standard_name "141173"/db_xref >> "UniSTS_NUM:141173"/note "map_weight=1"STS >> complement(704257..704403)/standard_name "DXS6984E"/db_xref >> "UniSTS_NUM:2498"/db_xref "UniSTS:DXS6984E"/db_xref >> "GM99-GB4:stSG2932"/note "map_weight=1"STS >> complement(704291..704471)/standard_name "STS-M38188"/db_xref >> "UniSTS_NUM:60882"/db_xref "UniSTS:STS-M38188"/note >> "map_weight=1"STS complement(704352..704489)/standard_name >> "D5S2593"/db_xref "UniSTS_NUM:32572"/db_xref >> "UniSTS:D5S2593"/db_xref "UniSTS:G13550"/note "map_weight=1"STS >> complement(732457..732578)/standard_name "AL035140"/db_xref >> "UniSTS_NUM:94651"/db_xref "UniSTS:AL035140"/note "map_weight=1"STS >> complement(754777..754899)/standard_name "AL035146"/db_xref >> "UniSTS_NUM:94658"/db_xref "UniSTS:AL035146"/note "map_weight=1"STS >> complement(792227..792346)/standard_name "AF020181"/db_xref >> "UniSTS_NUM:39479"/db_xref "UniSTS:AF020181"/db_xref >> "WUSTL-X:sWXD3585"/note "map_weight=1"STS >> complement(796966..797049)/standard_name "L77845"/db_xref >> "UniSTS_NUM:57902"/db_xref "UniSTS:L77845"/db_xref >> "WUSTL-X:sWXD2783"/note "map_weight=1"STS >> complement(803577..803776)/standard_name "DXS1106"/db_xref >> "UniSTS_NUM:30651"/db_xref "UniSTS:DXS1106"/db_xref >> "GM99-GB4:AFM263we1"/db_xref "TNG:SHGC-1092"/note "map_weight=1"STS >> complement(803580..803758)/standard_name "DXS1106"/db_xref >> "UniSTS_NUM:63232"/db_xref "UniSTS:Z17276"/db_xref >> "UniSTS:DXS1106"/db_xref "Genethon:AFM263we1"/db_xref >> "WUSTL-X:sWXD672"/note "map_weight=1"STS >> complement(804260..804395)/standard_name "AF020152"/db_xref >> "UniSTS_NUM:45420"/db_xref "UniSTS:AF020152"/db_xref >> "WUSTL-X:sWXD3586"/note "map_weight=1"STS >> complement(853592..853826)/standard_name "DXS8096"/db_xref >> "UniSTS_NUM:21236"/db_xref "UniSTS:DXS8096"/db_xref >> "UniSTS:Z51652"/db_xref "GM99-G3:AFMa051tc5"/db_xref >> "SHGC-G3:SHGC-21230"/note "map_weight=1"STS >> complement(853592..853864)/standard_name "SHGC-150960"/db_xref >> "UniSTS_NUM:173428"/db_xref "UniSTS:SHGC-150960"/note >> "map_weight=1"STS complement(906210..906384)/standard_name >> "AL008935"/db_xref "UniSTS_NUM:79896"/db_xref "UniSTS:AL008935"/note >> "map_weight=1"STS complement(914019..914122)/standard_name >> "STS-W88790"/db_xref "UniSTS_NUM:82788"/db_xref >> "UniSTS:STS-W88790"/note "map_weight=1"STS >> complement(914808..914927)/standard_name "SHGC-52701"/db_xref >> "UniSTS_NUM:11495"/db_xref "UniSTS:SHGC-52701"/db_xref >> "UniSTS:G36701"/note "map_weight=1"STS >> complement(916610..916774)/standard_name "RH45868"/db_xref >> "UniSTS_NUM:63171"/db_xref "UniSTS:RH45868"/db_xref >> "GM99-GB4:stSG21595"/note "map_weight=1"STS >> complement(936075..936201)/standard_name "RH78743"/db_xref >> "UniSTS_NUM:4877"/db_xref "UniSTS:RH78743"/db_xref >> "GM99-GB4:stSG42368"/note "map_weight=2"STS >> complement(936198..936325)/standard_name "SHGC-34973"/db_xref >> "UniSTS_NUM:23617"/db_xref "UniSTS:SHGC-34973"/db_xref >> "UniSTS:G29704"/note "map_weight=1"STS >> complement(939033..939162)/standard_name "RH17462"/db_xref >> "UniSTS_NUM:41304"/db_xref "UniSTS:H03933"/db_xref >> "UniSTS:RH17462"/note "map_weight=1"STS >> complement(939050..939161)/standard_name "A005E02"/db_xref >> "UniSTS_NUM:56778"/db_xref "UniSTS:G26235"/db_xref >> "UniSTS:R62801"/db_xref "UniSTS:A005E02"/db_xref >> "WI-RH:TIGR-A005E02"/note "map_weight=1"STS >> complement(956876..956996)/standard_name "STS-M99701"/db_xref >> "UniSTS_NUM:21153"/db_xref "UniSTS:STS-M99701"/note >> "map_weight=1"STS complement(957185..957362)/standard_name >> "RH80258"/db_xref "UniSTS_NUM:91622"/db_xref >> "UniSTS:RH80258"/db_xref "GM99-GB4:sts-AA040895"/note >> "map_weight=1"misc_feature 1..109496/note "contig >> AL035427.17.1.161273 51778..161273(1)"misc_feature 109497..189301/note >> "contig AL590407.8.1.81805 2001..81805(1)"misc_feature >> 189302..225201/note "contig Z68871.2.1.37899 1..35900(-1)"misc_feature >> 225202..230371/note "contig AL669904.1.1.5270 >> 101..5270(1)"misc_feature 230372..267593/note "contig >> Z95624.1.1.37322 1..37222(-1)"misc_feature 267594..267689/note >> "contig AL645812.1.1.195 100..195(1)"misc_feature 267690..282719/note >> "contig Z93943.1.1.15130 1..15030(-1)"misc_feature >> 282720..327653/note "contig Z75895.1.1.45038 1..44934(-1)"misc_feature >> 327654..365457/note "contig Z73361.1.1.40509 >> 1..37804(-1)"misc_feature 365458..401071/note "contig >> AL008708.4.1.35714 101..35714(1)"misc_feature 401072..438735/note >> "contig Z75746.1.1.37764 1..37664(-1)"misc_feature 438736..478402/note >> "contig Z85997.1.1.40600 1..39667(-1)"misc_feature >> 478403..547950/note "contig AL035494.8.1.69648 >> 101..69648(1)"misc_feature 547951..564664/note "contig >> Z81014.1.1.16814 1..16714(-1)"misc_feature 564665..605385/note >> "contig Z68694.1.1.40822 1..40721(-1)"misc_feature 605386..645869/note >> "contig AL133348.8.1.40584 101..40584(1)"misc_feature >> 645870..689721/note "contig Z92846.2.1.43952 >> 101..43952(1)"misc_feature 689722..749434/note "contig >> AL606763.6.1.61713 2001..61713(1)"misc_feature 749435..754942/note >> "contig AL079333.8.1.7508 2001..7508(1)"misc_feature >> 754943..807439/note "contig AL117327.5.1.52597 >> 101..52597(1)"misc_feature 807440..848370/note "contig >> Z69733.1.1.41031 1..40931(-1)"misc_feature 848371..875749/note >> "contig AL035444.9.1.27479 101..27479(1)"misc_feature >> 875750..897175/note "contig AL021308.1.1.21526 >> 101..21526(1)"misc_feature 897176..939757/note "contig >> Z73965.1.1.42686 1..42582(-1)"misc_feature 939758..944624/note >> "contig Z68327.1.1.4968 1..4867(-1)"misc_feature 944625..1000000/note >> "contig AL049610.9.1.100269 99..55474(1)" >> Stack trace follows .... >> >> >> at >> org.biojavax.bio.seq.io.GenbankFormat.readRichSequence( >> GenbankFormat.java:462) >> at >> org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) >> ... 1 more >> >> >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> >> >> >> >> >> > > > > From markjschreiber at gmail.com Sat Nov 1 04:11:19 2008 From: markjschreiber at gmail.com (Mark Schreiber) Date: Sat, 1 Nov 2008 12:11:19 +0800 Subject: [Biojava-l] How to get full query description from blast result In-Reply-To: References: <93b45ca50810310100w5e922161iaf79469050afbc3c@mail.gmail.com> Message-ID: <93b45ca50810312111hb861857qa121962498ef82c6@mail.gmail.com> Hi - You could make a request for improvement in the bugzilla system (that way we can track if it ever gets done). Alternatively if you post to the list some alternative code for the method that would be great. - Mark On Fri, Oct 31, 2008 at 8:07 PM, David Toomey wrote: > Hi Mark > > I tried that and it appears that it is not being parsed. Only the portion of the line up to the first space is returned as queryId. The rest of the line is not returned. > Could this be added to the blast parser? > > Cheers > > Dave > > > -----Original Message----- > From: Mark Schreiber [mailto:markjschreiber at gmail.com] > Sent: 31 October 2008 08:01 > To: holland at eaglegenomics.com > Cc: David Toomey; biojava-l at biojava.org > Subject: Re: [Biojava-l] How to get full query description from blast result > > Hi - > > If you use the BlastEcho program on the cookbook pages you can find > out if and how the information is being parsed and where it goes. > > It is possible it is not parsed. In this case you could add a feature request. > > - Mark > > On Thu, Oct 30, 2008 at 10:10 PM, Richard Holland > wrote: >> >> Good question! >> >> Can someone who knows a lot about the blast parser internals provide >> David with an answer to his question? >> >> cheers, >> Richard >> >> 2008/10/29 David Toomey : >> > Hi >> > >> > I am parsing blast results and I need to get the complete query description line but I can only work out how to get the first part of the line. So for example in the blast result query >> > >> > Query= sp|Q8I5D2|ABRA_PLAF7 101 kDa malaria antigen OS=Plasmodium >> > falciparum (isolate 3D7) GN=ABRA >> > >> > I need to get all of the description above but I can only seem to retrieve the first part 'sp|Q8I5D2|ABRA_PLAF7' which I get from the queryId property of the annotation >> > >> > Can anyone point me in the right direction for retrieving the complete query description? >> > >> > Thanks >> > >> > Dave >> > >> > >> > _______________________________________________ >> > Biojava-l mailing list - Biojava-l at lists.open-bio.org >> > http://lists.open-bio.org/mailman/listinfo/biojava-l >> > >> >> >> >> -- >> Richard Holland, BSc MBCS >> Finance Director, Eagle Genomics Ltd >> M: +44 7500 438846 | E: holland at eaglegenomics.com >> http://www.eaglegenomics.com/ >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l > From gabrielle_doan at gmx.net Mon Nov 3 14:48:45 2008 From: gabrielle_doan at gmx.net (Gabrielle Doan) Date: Mon, 03 Nov 2008 15:48:45 +0100 Subject: [Biojava-l] differences between read in sequence and stored sequence in database] In-Reply-To: References: <49072127.7010304@gmx.net> Message-ID: <490F0F4D.3090100@gmx.net> Hi all, I've changed the regular expression in org.biojavax.bio.seq.io.GenbankFormat from protected static final Pattern sectp = Pattern.compile("^(\\s{0,8}(\\S+)\\s{1,7}(.*)|\\s{21}(/\\S+?)=(.*)|\\s{21}(/\\S+))$"); <\code> to protected static final Pattern sectp = Pattern.compile("^(\\s{0,8}([A-Za-z]+)\\s{1,7}(.*)|\\s{21}(/\\S+?)=(.*)|\\s{21}(/\\S+))$"); <\code> like in BioRuby (http://cvs.biojava.org/cgi-bin/viewcvs/viewcvs.cgi/bioruby/lib/bio/db.rb.diff?r1=0.24&r2=0.25&cvsroot=bioruby). But than features like D-loop can't be detected. So this is not the solution for my problem. The reason for the truncation is readSection(BufferedReader br) in org.biojavax.bio.seq.io.GenbankFormat. if (line==null || line.length()==0 || (!line.startsWith(" ") && linecount++>0)) { // dump out last part of section section.add(new String[]{currKey,currVal.toString()}); br.reset(); done = true; <\snip> The condition in the if-clause will ignore lines which don't begin with a whitespace, so this line will be read 99999961 cccgcccaca cccctcggcc ctgccctctg gccatacagg ttctcggtgg tgttgaagag <\snip> and this line won't be read: 100000021 gtcctcgggc tccggcttgg tgctcacgca cacaggaaag tcagcttctc ctgggagggc <\snip> If you change the if-statement to this: String firstSecKey = section.size() == 0 ? "" : ((String[])section.get(0))[0]; if (line==null || line.length()==0 || (!line.startsWith(" ") && linecount++>0 && ( !firstSecKey.equals(START_SEQUENCE_TAG) || line.startsWith(END_SEQUENCE_TAG)))) <\snip> You can add the whole sequence without truncation to the database. I have attached GenbankFormat.java in this mail. Can anybody check the method for me and commit it? Since I'm not a BioJava specialist. Cheers, Gabrielle Richard Holland schrieb: > Hello. > > Sorry for the delayed reply - I've been away on business all week. > > The similar Ruby issue (and solution) is discussed here: > > http://portal.open-bio.org/pipermail/bioruby/2004-March.txt > > How did you parse the files in the first place? Did you use the new > GenBank parsers (BJX), or the older ones? This will help indicate > where the problem lies - the data will have been truncated at the > point it was parsed from file, so the data in your database will > reflect this and you'll have to reload it once the appropriate parser > has been fixed. > > If it was the newer BJX parser, then the problem most probably lies in > this regex from org.biojavax.bio.seq.io.GenbankFormat, which can > probably be fixed in a similar manner to the Ruby equivalent dicussed > in the posting above: > > protected static final Pattern sectp = > Pattern.compile("^(\\s{0,8}(\\S+)\\s{1,7}(.*)|\\s{21}(/\\S+?)=(.*)|\\s{21}(/\\S+))$"); > > Could someone volunteer to develop and test a fix? If you come up with > something, please commit it to the SVN trunk. > > cheers, > Richard > > > 2008/10/28 Gabrielle Doan : >> Hi all, >> concering the problem as described below I have found out that this problem >> also occured in BioRuby and was fixed in 2004. >> See: >> http://cvs.biojava.org/cgi-bin/viewcvs/viewcvs.cgi/bioruby/lib/bio/db.rb?cvsroot=bioruby >> Unfortunately I'm clueless about BioRuby. Does anybody recognize this >> problem or understand how it was solved in BioRuby? >> >> I am grateful for any hints. >> >> Cheers, >> >> Gabrielle >> >> >> -------- Original-Nachricht -------- >> Betreff: [Biojava-l] differences between read in sequence and stored >> sequence in database >> Datum: Mon, 27 Oct 2008 13:57:03 +0100 >> Von: Gabrielle Doan >> An: biojava-l at biojava.org >> >> Hi all, >> >> I have a BioSQL database which contains all human chromsomes. For my >> recent project I have to query for a part of a sequence. >> As far as I know I can get the whole sequence from the entry >> Biosequence.Seq in the BioSQL schema. So I've made this query: >> >> SELECT SUBSTRING(bs.seq, 131615042, 131626262) FROM biosequence bs; >> >> But this query hasn't yield the desired string, because the length of >> this biosequence is only 100,000,020 bp. I am very confused why I get >> such a discrepancy. I have added all chromosomes with the build in >> method in BioJava addRichSequence(RichSequence seq) to the database. >> From my raw data I know that this sequence should have a length of >> 140,279,252 bp. So where is the remaining part of my sequence? I have >> observed these discrepancies on all chromsomes which are longer than >> 100,000,020 bp. >> >> Here is an abstract of my database: >> bioentry_id description length >> 2 Homo sapiens mitochondrion, complete genome. 16571 >> 3 Homo sapiens chromosome Y, reference assembly, complete sequence. >> 57772954 >> 4 Homo sapiens chromosome X, reference assembly, complete sequence. >> 100000020 >> 5 Homo sapiens chromosome 22, reference assembly, complete sequence. >> 49691432 >> 6 Homo sapiens chromosome 21, reference assembly, complete sequence. >> 46944323 >> 7 Homo sapiens chromosome 20, reference assembly, complete sequence. >> 25960004 >> 8 Homo sapiens chromosome 9, reference assembly, complete sequence. >> 100000020 >> 9 Homo sapiens chromosome 7, reference assembly, complete sequence. >> 100000020 >> >> Sequences smaller than 100,000,020 bp are correctly stored under >> Biosequence.seq. >> >> I am grateful for any hints, which explain the behaviour of my database. >> >> Cheers, >> >> Gabrielle >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> > > > From community at struck.lu Mon Nov 3 16:54:16 2008 From: community at struck.lu (community at struck.lu) Date: Mon, 03 Nov 2008 17:54:16 +0100 Subject: [Biojava-l] Change the height of the peaks in a chromatogram Message-ID: Hello, I want to provide a slider where the user can change dynamically the height of the peaks of a chromatogram. To do this I change the maxTraceValue variable and set the maximum values lower than they are in reality. Does there exist a better method do this? Best regards, Daniel Struck _________________________________________________________ Mail sent using root eSolutions Webmailer - www.root.lu From holland at eaglegenomics.com Mon Nov 3 18:18:55 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Mon, 3 Nov 2008 18:18:55 +0000 Subject: [Biojava-l] Change the height of the peaks in a chromatogram In-Reply-To: References: Message-ID: Could you use some kind of scale transformation on the chromatogram's Graphics2D object, rather than modifying the data? http://java.sun.com/j2se/1.4.2/docs/api/java/awt/Graphics2D.html#scale(double,%20double) cheers, Richard 2008/11/3 community at struck.lu : > Hello, > > > I want to provide a slider where the user can change dynamically the height of > the peaks of a chromatogram. To do this I change the maxTraceValue variable > and set the maximum values lower than they are in reality. > Does there exist a better method do this? > > > Best regards, > Daniel Struck > _________________________________________________________ > Mail sent using root eSolutions Webmailer - www.root.lu > > > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From holland at eaglegenomics.com Mon Nov 3 18:22:29 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Mon, 3 Nov 2008 18:22:29 +0000 Subject: [Biojava-l] SCF: support for ambiguities In-Reply-To: References: Message-ID: Thanks for the fix. I'll review this and get back to you in a couple of days. cheers, Richard 2008/11/3 community at struck.lu : > I have added the missing ambiguities to DNATools.java and then used these in > SCF.java. > The two patches are appended to this email. > > Greetings, > Daniel > > > "Richard Holland" wrote: > >> A patch would be much appreciated! >> >> cheers, >> Richard >> >> 2008/10/31 community at struck.lu : >> > True. It was a first quick and dirty hack to get the rest of my project >> going. >> > >> > I think adding support of the IUPAC ambiguities to DNATools would be the >> most >> > approbate solution. The SCF class can then easily be adapted. >> > >> > Are there any plans to do so? >> > If not, I could give it a try and submit a patch for DNATools and SCF. >> > >> > Greetings, >> > Daniel >> > >> > "Richard Holland" wrote: >> > >> >> It is the correct method, yes. >> >> >> >> However your code constructs a new hash set every time it does the >> >> check for W or S etc.. It would be much more efficient to create >> >> class-static references to the ambiguity symbols you need, instead of >> >> (re)creating them every time they're encountered. A class-static gap >> >> symbol reference would also be good in this situation. >> >> >> >> cheers, >> >> Richard >> >> >> >> >> >> >> >> 2008/10/31 community at struck.lu : >> >> > Hello, >> >> > >> >> > >> >> > I am using the SCF class in the context of HIV-1 population sequencing. >> In >> >> > this context we do have sometimes ambiguous base calls. To support them > I >> >> > extended the SCF class to allow for IUPAC ambiguities up to 2 >> nucleotides. >> >> > >> >> > Therefore I simply added the following code to the "decode" function: >> >> > >> >> > ######################### >> >> > public Symbol decode(byte call) throws IllegalSymbolException { >> >> > >> >> > //get the DNA Alphabet >> >> > Alphabet dna = DNATools.getDNA(); >> >> > >> >> > char c = (char) call; >> >> > switch (c) { >> >> > case 'a': >> >> > case 'A': >> >> > return DNATools.a(); >> >> > case 'c': >> >> > case 'C': >> >> > return DNATools.c(); >> >> > case 'g': >> >> > case 'G': >> >> > return DNATools.g(); >> >> > case 't': >> >> > case 'T': >> >> > return DNATools.t(); >> >> > case 'n': >> >> > case 'N': >> >> > return DNATools.n(); >> >> > case '-': >> >> > return DNATools.getDNA().getGapSymbol(); >> >> > case 'w': >> >> > case 'W': >> >> > //make the 'W' symbol >> >> > Set symbolsThatMakeW = new HashSet(); >> >> > symbolsThatMakeW.add(DNATools.a()); >> >> > symbolsThatMakeW.add(DNATools.t()); >> >> > Symbol w = dna.getAmbiguity(symbolsThatMakeW); >> >> > return w; >> >> > case 's': >> >> > case 'S': >> >> > //make the 'S' symbol >> >> > Set symbolsThatMakeS = new HashSet(); >> >> > symbolsThatMakeS.add(DNATools.c()); >> >> > symbolsThatMakeS.add(DNATools.g()); >> >> > Symbol s = dna.getAmbiguity(symbolsThatMakeS); >> >> > return s; >> >> > ... (and so on) >> >> > ######################### >> >> > >> >> > Is this the right way to do it? And if so, how can this code be > submitted >> > to >> >> > the official biojava source code? >> >> > >> >> > >> >> > Best regards, >> >> > Daniel Struck >> >> > _________________________________________________________ >> >> > Mail sent using root eSolutions Webmailer - www.root.lu >> >> > >> >> > >> >> > _______________________________________________ >> >> > Biojava-l mailing list - Biojava-l at lists.open-bio.org >> >> > http://lists.open-bio.org/mailman/listinfo/biojava-l >> >> > >> >> >> >> >> > >> > >> > _________________________________________________________ >> > Mail sent using root eSolutions Webmailer - www.root.lu >> > >> > >> > >> >> > > > _________________________________________________________ > Mail sent using root eSolutions Webmailer - www.root.lu > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From gabrielle_doan at gmx.net Tue Nov 4 08:29:31 2008 From: gabrielle_doan at gmx.net (Gabrielle Doan) Date: Tue, 04 Nov 2008 09:29:31 +0100 Subject: [Biojava-l] performance problems with BJX In-Reply-To: <490F0F4D.3090100@gmx.net> References: <49072127.7010304@gmx.net> <490F0F4D.3090100@gmx.net> Message-ID: <491007EB.6000007@gmx.net> Dear all, I have some perfomance problems with BioJavaX. I wanted to add the human chromosome 1 into my MySQL database with the build in method addRichSequence from the org.biojavax.bio.db.biosql.BioSQLRichSequenceDB and was wondered why this method waste so much memory. I started my program with -Xmx8G but I got a Java heap space messseage on my console. So I used -Xmx15G to insert the chromsome (range between 8G and 15G not tested). I wonder why a genbank file of about 300 MB needs about 15G memory to be added into the database. Does anybody has the same problem or can give me any advice? Cheers, Gabrielle From markjschreiber at gmail.com Tue Nov 4 08:53:29 2008 From: markjschreiber at gmail.com (Mark Schreiber) Date: Tue, 4 Nov 2008 16:53:29 +0800 Subject: [Biojava-l] performance problems with BJX In-Reply-To: <491007EB.6000007@gmx.net> References: <49072127.7010304@gmx.net> <490F0F4D.3090100@gmx.net> <491007EB.6000007@gmx.net> Message-ID: <93b45ca50811040053w5111345t9bb895236393345a@mail.gmail.com> Object relational mapping can be memory hungry but this does seem expensive. Probably the easiest way to track the problem is to run a memory profiler (such as the one in Netbeans) and see if there is either some very large object or a proliferation of thousands of small objects which would point to a memory leak. Best regards, - Mark On Tue, Nov 4, 2008 at 4:29 PM, Gabrielle Doan wrote: > > Dear all, > I have some perfomance problems with BioJavaX. > > I wanted to add the human chromosome 1 into my MySQL database with the build in method addRichSequence from the org.biojavax.bio.db.biosql.BioSQLRichSequenceDB and was wondered why this method waste so much memory. I started my program with -Xmx8G but I got a Java heap space messseage on my console. So I used -Xmx15G to insert the chromsome (range between 8G and 15G not tested). > > I wonder why a genbank file of about 300 MB needs about 15G memory to be added into the database. > > Does anybody has the same problem or can give me any advice? > > Cheers, Gabrielle > > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l From markjschreiber at gmail.com Tue Nov 4 09:49:04 2008 From: markjschreiber at gmail.com (Mark Schreiber) Date: Tue, 4 Nov 2008 17:49:04 +0800 Subject: [Biojava-l] Off Topic: Solutions to evenly overlapping substring problem?? Message-ID: <93b45ca50811040149n640020dcp8948d4d875a62ed7@mail.gmail.com> Hi - Does anyone know how to solve this problem? I have a piece of DNA which is 10763 bp long. I want to divide this up evenly into 10 fragments each of 2500bp in length. What is the overlap required between each fragment? Or more generally, for a sequence of length L, how much overlap O is required to generate N fragments of length l (were N and l are fixed)? A solution would be most appreciated. Extra points for coding it in biojava and posting it on the cookbook!! - Mark From holland at eaglegenomics.com Tue Nov 4 10:49:17 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Tue, 4 Nov 2008 10:49:17 +0000 Subject: [Biojava-l] Off Topic: Solutions to evenly overlapping substring problem?? In-Reply-To: <93b45ca50811040149n640020dcp8948d4d875a62ed7@mail.gmail.com> References: <93b45ca50811040149n640020dcp8948d4d875a62ed7@mail.gmail.com> Message-ID: It's a maths problem. Length of total sequence = L Number of overlapping sequences required = N Number of overlaps required = N-1 Length of each overlapping sequence required =S Offset for each overlapping sequence = length of one non-overlapping sequence = L/(N-1) = X Overlap = O = S - X In your case this gives: X = 10763 / (10-1) = 10763 / 9 = 1196 (rounded up) O = 2500 - 1196 = 1304 So you would start at the beginning, take S bases, then move along X bases and take the next S, and so on... your first sequence would be 1..2500, your second would be 1197..3697, your third would be 2393..4893, etc. etc., and each one would then overlap the next by 1304. cheers, Richard 2008/11/4 Mark Schreiber : > Hi - > > Does anyone know how to solve this problem? > > I have a piece of DNA which is 10763 bp long. I want to divide this up > evenly into 10 fragments each of 2500bp in length. What is the overlap > required between each fragment? > > Or more generally, for a sequence of length L, how much overlap O is > required to generate N fragments of length l (were N and l are fixed)? > > A solution would be most appreciated. Extra points for coding it in > biojava and posting it on the cookbook!! > > - Mark > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From holland at eaglegenomics.com Tue Nov 4 11:58:18 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Tue, 4 Nov 2008 11:58:18 +0000 Subject: [Biojava-l] performance problems with BJX In-Reply-To: <93b45ca50811040053w5111345t9bb895236393345a@mail.gmail.com> References: <49072127.7010304@gmx.net> <490F0F4D.3090100@gmx.net> <491007EB.6000007@gmx.net> <93b45ca50811040053w5111345t9bb895236393345a@mail.gmail.com> Message-ID: BioJava stores sequences as a list of symbol objects. Each object is a singleton, and so the sequence is essentially a list of pointers. I guess you're running on a 64-bit machine. One pointer on a 64-bit machine is 64 bits = 8 bytes. Your genbank file for human chromosome 1 is probably going to have about 250,000,000 bases or so. Each of those bases, as a string, takes 1 or 2 bytes (8- or 16-bits) depending on encoding. So a string, or file, encoded using 8 bits, you're going to get 1 byte per base = approx. 250MB, plus feature and annotation data. That sounds about right given that your file is 300MB. As a list of pointers to singletons on a 64-bit machine, you're going to end up using 8 bytes per base instead of 1 byte. 8 * 250MB = 2Gig. This explains the first 2 gigabytes. Where the other 13 are coming from I'm not sure, but I wouldn't be surprised if they're the features. cheers, Richard PS. The new BJ3 will only convert sequences from String to Symbols when explicitly requested to do so - this will help save memory (and time) when doing simple operations such as copying files into databases without any intermediate processing. 2008/11/4 Mark Schreiber : > Object relational mapping can be memory hungry but this does seem > expensive. Probably the easiest way to track the problem is to run a > memory profiler (such as the one in Netbeans) and see if there is > either some very large object or a proliferation of thousands of small > objects which would point to a memory leak. > > Best regards, > > - Mark > > On Tue, Nov 4, 2008 at 4:29 PM, Gabrielle Doan wrote: >> >> Dear all, >> I have some perfomance problems with BioJavaX. >> >> I wanted to add the human chromosome 1 into my MySQL database with the build in method addRichSequence from the org.biojavax.bio.db.biosql.BioSQLRichSequenceDB and was wondered why this method waste so much memory. I started my program with -Xmx8G but I got a Java heap space messseage on my console. So I used -Xmx15G to insert the chromsome (range between 8G and 15G not tested). >> >> I wonder why a genbank file of about 300 MB needs about 15G memory to be added into the database. >> >> Does anybody has the same problem or can give me any advice? >> >> Cheers, Gabrielle >> >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From markjschreiber at gmail.com Tue Nov 4 12:05:34 2008 From: markjschreiber at gmail.com (Mark Schreiber) Date: Tue, 4 Nov 2008 20:05:34 +0800 Subject: [Biojava-l] performance problems with BJX In-Reply-To: References: <49072127.7010304@gmx.net> <490F0F4D.3090100@gmx.net> <491007EB.6000007@gmx.net> <93b45ca50811040053w5111345t9bb895236393345a@mail.gmail.com> Message-ID: <93b45ca50811040405l7e585775g91b0e667870c7541@mail.gmail.com> I would have thought the symbol packing threshold would have kicked in which should reduce the memory load on a sequence. - Mark On Tue, Nov 4, 2008 at 7:58 PM, Richard Holland wrote: > BioJava stores sequences as a list of symbol objects. Each object is a > singleton, and so the sequence is essentially a list of pointers. > > I guess you're running on a 64-bit machine. One pointer on a 64-bit > machine is 64 bits = 8 bytes. > > Your genbank file for human chromosome 1 is probably going to have > about 250,000,000 bases or so. Each of those bases, as a string, takes > 1 or 2 bytes (8- or 16-bits) depending on encoding. So a string, or > file, encoded using 8 bits, you're going to get 1 byte per base = > approx. 250MB, plus feature and annotation data. That sounds about > right given that your file is 300MB. > > As a list of pointers to singletons on a 64-bit machine, you're going > to end up using 8 bytes per base instead of 1 byte. 8 * 250MB = 2Gig. > > This explains the first 2 gigabytes. Where the other 13 are coming > from I'm not sure, but I wouldn't be surprised if they're the > features. > > cheers, > Richard > > PS. The new BJ3 will only convert sequences from String to Symbols > when explicitly requested to do so - this will help save memory (and > time) when doing simple operations such as copying files into > databases without any intermediate processing. > > > > 2008/11/4 Mark Schreiber : >> Object relational mapping can be memory hungry but this does seem >> expensive. Probably the easiest way to track the problem is to run a >> memory profiler (such as the one in Netbeans) and see if there is >> either some very large object or a proliferation of thousands of small >> objects which would point to a memory leak. >> >> Best regards, >> >> - Mark >> >> On Tue, Nov 4, 2008 at 4:29 PM, Gabrielle Doan wrote: >>> >>> Dear all, >>> I have some perfomance problems with BioJavaX. >>> >>> I wanted to add the human chromosome 1 into my MySQL database with the build in method addRichSequence from the org.biojavax.bio.db.biosql.BioSQLRichSequenceDB and was wondered why this method waste so much memory. I started my program with -Xmx8G but I got a Java heap space messseage on my console. So I used -Xmx15G to insert the chromsome (range between 8G and 15G not tested). >>> >>> I wonder why a genbank file of about 300 MB needs about 15G memory to be added into the database. >>> >>> Does anybody has the same problem or can give me any advice? >>> >>> Cheers, Gabrielle >>> >>> _______________________________________________ >>> Biojava-l mailing list - Biojava-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/biojava-l >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> > > > > -- > Richard Holland, BSc MBCS > Finance Director, Eagle Genomics Ltd > M: +44 7500 438846 | E: holland at eaglegenomics.com > http://www.eaglegenomics.com/ > From markjschreiber at gmail.com Tue Nov 4 12:55:58 2008 From: markjschreiber at gmail.com (Mark Schreiber) Date: Tue, 4 Nov 2008 20:55:58 +0800 Subject: [Biojava-l] Off Topic: Solutions to evenly overlapping substring problem?? In-Reply-To: References: <93b45ca50811040149n640020dcp8948d4d875a62ed7@mail.gmail.com> Message-ID: <93b45ca50811040455y7e531e90me3541252e5f24186@mail.gmail.com> Hi - This is what I thought as well but if you use that number to generate the sub strings it doesn't work. The value 1585 works (with one character left over). I'm not sure how to make that into a generalizable formula though. - Mark On Tue, Nov 4, 2008 at 6:49 PM, Richard Holland wrote: > It's a maths problem. > > Length of total sequence = L > > Number of overlapping sequences required = N > > Number of overlaps required = N-1 > > Length of each overlapping sequence required =S > > Offset for each overlapping sequence = length of one non-overlapping > sequence = L/(N-1) = X > > Overlap = O = S - X > > In your case this gives: > > X = 10763 / (10-1) > = 10763 / 9 > = 1196 (rounded up) > O = 2500 - 1196 > = 1304 > > So you would start at the beginning, take S bases, then move along X > bases and take the next S, and so on... your first sequence would be > 1..2500, your second would be 1197..3697, your third would be > 2393..4893, etc. etc., and each one would then overlap the next by > 1304. > > cheers, > Richard > > > 2008/11/4 Mark Schreiber : >> Hi - >> >> Does anyone know how to solve this problem? >> >> I have a piece of DNA which is 10763 bp long. I want to divide this up >> evenly into 10 fragments each of 2500bp in length. What is the overlap >> required between each fragment? >> >> Or more generally, for a sequence of length L, how much overlap O is >> required to generate N fragments of length l (were N and l are fixed)? >> >> A solution would be most appreciated. Extra points for coding it in >> biojava and posting it on the cookbook!! >> >> - Mark >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> > > > > -- > Richard Holland, BSc MBCS > Finance Director, Eagle Genomics Ltd > M: +44 7500 438846 | E: holland at eaglegenomics.com > http://www.eaglegenomics.com/ > From stefan.grzybek at novartis.com Tue Nov 4 13:51:52 2008 From: stefan.grzybek at novartis.com (stefan.grzybek at novartis.com) Date: Tue, 4 Nov 2008 14:51:52 +0100 Subject: [Biojava-l] Off Topic: Solutions to evenly overlapping substring problem?? In-Reply-To: <93b45ca50811040455y7e531e90me3541252e5f24186@mail.gmail.com> Message-ID: Hi Mark and David, I have a slightly different approach: n = L / N; minimum number of bp in a single interval o = (l-n) / (N-1); additional overlap possibility (bp) for each interval - maybe there is a better description for this ? Then you can start with the interval 1 to l and add to the start point for each iteration (l-n+o). It might be that the last segment needs to be a bit longer or shorter than l. For your example, n = 1076 ("floor"), o = 158 ("floor"), (l-n+o) = 1582. #segment, start, end, overlap with previous segment 1 s: 1 e: 2500 - overlap: 0 2 s: 919 e: 3418 - overlap: 1582 3 s: 1837 e: 4336 - overlap: 1582 4 s: 2755 e: 5254 - overlap: 1582 5 s: 3673 e: 6172 - overlap: 1582 6 s: 4591 e: 7090 - overlap: 1582 7 s: 5509 e: 8008 - overlap: 1582 8 s: 6427 e: 8926 - overlap: 1582 9 s: 7345 e: 9844 - overlap: 1582 10 s: 8263 e: 10762 - overlap: 1582 This approach seems to work reasonably well also with l=1500, l=3500, l=4500. Best regards, Stefan "Mark Schreiber" Sent by: biojava-l-bounces at lists.open-bio.org 04-11-2008 13:58 To holland at eaglegenomics.com cc "biojava-l at biojava.org" Subject Re: [Biojava-l] Off Topic: Solutions to evenly overlapping substring problem?? Hi - This is what I thought as well but if you use that number to generate the sub strings it doesn't work. The value 1585 works (with one character left over). I'm not sure how to make that into a generalizable formula though. - Mark On Tue, Nov 4, 2008 at 6:49 PM, Richard Holland wrote: > It's a maths problem. > > Length of total sequence = L > > Number of overlapping sequences required = N > > Number of overlaps required = N-1 > > Length of each overlapping sequence required =S > > Offset for each overlapping sequence = length of one non-overlapping > sequence = L/(N-1) = X > > Overlap = O = S - X > > In your case this gives: > > X = 10763 / (10-1) > = 10763 / 9 > = 1196 (rounded up) > O = 2500 - 1196 > = 1304 > > So you would start at the beginning, take S bases, then move along X > bases and take the next S, and so on... your first sequence would be > 1..2500, your second would be 1197..3697, your third would be > 2393..4893, etc. etc., and each one would then overlap the next by > 1304. > > cheers, > Richard > > > 2008/11/4 Mark Schreiber : >> Hi - >> >> Does anyone know how to solve this problem? >> >> I have a piece of DNA which is 10763 bp long. I want to divide this up >> evenly into 10 fragments each of 2500bp in length. What is the overlap >> required between each fragment? >> >> Or more generally, for a sequence of length L, how much overlap O is >> required to generate N fragments of length l (were N and l are fixed)? >> >> A solution would be most appreciated. Extra points for coding it in >> biojava and posting it on the cookbook!! >> >> - Mark >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> > > > > -- > Richard Holland, BSc MBCS > Finance Director, Eagle Genomics Ltd > M: +44 7500 438846 | E: holland at eaglegenomics.com > http://www.eaglegenomics.com/ > _______________________________________________ Biojava-l mailing list - Biojava-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/biojava-l _________________________ CONFIDENTIALITY NOTICE The information contained in this e-mail message is intended only for the exclusive use of the individual or entity named above and may contain information that is privileged, confidential or exempt from disclosure under applicable law. If the reader of this message is not the intended recipient, or the employee or agent responsible for delivery of the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify the sender immediately by e-mail and delete the material from any computer. Thank you. From community at struck.lu Tue Nov 4 16:20:09 2008 From: community at struck.lu (community at struck.lu) Date: Tue, 04 Nov 2008 17:20:09 +0100 Subject: [Biojava-l] Change the height of the peaks in a chromatogram In-Reply-To: References: Message-ID: Thanks, that did point me in the right direction. This did the trick: ######################### // zoom it g2.translate(0, -OUT_HEIGHT * (zoom - 1)); g2.scale(1, zoom); ######################### This is my test class if anyone wants to try it out: ######################### /* * To change this template, choose Tools | Templates * and open the template in the editor. */ package trace; import java.awt.Graphics; import java.awt.Graphics2D; import java.io.File; import java.io.IOException; import javax.swing.BoxLayout; import javax.swing.JFrame; import javax.swing.JPanel; import javax.swing.JSlider; import javax.swing.event.ChangeEvent; import javax.swing.event.ChangeListener; import org.biojava.bio.chromatogram.Chromatogram; import org.biojava.bio.chromatogram.UnsupportedChromatogramFormatException; import org.biojava.bio.chromatogram.graphic.ChromatogramGraphic; import org.biojava.bio.program.scf.SCF; /** * * @author Daniel Struck */ public class TracePanel_test extends JPanel implements ChangeListener { private final int OUT_HEIGHT = 50; private Chromatogram c; private double zoom; public TracePanel_test(Chromatogram c, double zoom) { this.c = c; this.zoom = zoom; } @Override public void paintComponent(Graphics g) { Graphics2D g2 = (Graphics2D) g; /* create ChromatogramGraphic */ ChromatogramGraphic gfx = new ChromatogramGraphic(c); gfx.setHeight(OUT_HEIGHT); gfx.setHorizontalScale(1.0f); gfx.setOption(ChromatogramGraphic.Option.USE_PER_SHAPE_TRANSFORM, Boolean.TRUE); // zoom it g2.translate(0, -OUT_HEIGHT * (zoom - 1)); g2.scale(1, zoom); gfx.drawTo(g2); } public static void main(String[] args) { try { JFrame frame = new JFrame(); frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE); SCF chroma = SCF.create(new File("someTraceFileSomeWhere.scf")); TracePanel_test test1 = new TracePanel_test(chroma, 1); JPanel panel = new JPanel(); panel.setLayout(new BoxLayout(panel, BoxLayout.X_AXIS)); JSlider zoomSlider = new JSlider(JSlider.VERTICAL, 1, 20, 1); zoomSlider.addChangeListener(test1); panel.add(zoomSlider); panel.add(test1); frame.getContentPane().add(panel); frame.setSize(800, 80); frame.setVisible(true); } catch (IOException ex) { ex.printStackTrace(); } catch (UnsupportedChromatogramFormatException ex) { ex.printStackTrace(); } } public void stateChanged(ChangeEvent e) { JSlider source = (JSlider) e.getSource(); zoom = source.getValue(); this.repaint(); } } ######################### Greetings, Daniel Struck "Richard Holland" wrote: > Could you use some kind of scale transformation on the chromatogram's > Graphics2D object, rather than modifying the data? > > http://java.sun.com/j2se/1.4.2/docs/api/java/awt/Graphics2D.html#scale(double,%20double) > > cheers, > Richard > > 2008/11/3 community at struck.lu : > > Hello, > > > > > > I want to provide a slider where the user can change dynamically the height > of > > the peaks of a chromatogram. To do this I change the maxTraceValue variable > > and set the maximum values lower than they are in reality. > > Does there exist a better method do this? > > > > > > Best regards, > > Daniel Struck > > _________________________________________________________ > > Mail sent using root eSolutions Webmailer - www.root.lu > > > > > > _______________________________________________ > > Biojava-l mailing list - Biojava-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/biojava-l > > > > _________________________________________________________ Mail sent using root eSolutions Webmailer - www.root.lu From holland at eaglegenomics.com Wed Nov 5 11:49:40 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Wed, 5 Nov 2008 11:49:40 +0000 Subject: [Biojava-l] SCF: support for ambiguities In-Reply-To: References: Message-ID: This has now been applied to the trunk of biojava-live. cheers, Richard 2008/11/3 Richard Holland : > Thanks for the fix. I'll review this and get back to you in a couple of days. > > cheers, > Richard > > 2008/11/3 community at struck.lu : >> I have added the missing ambiguities to DNATools.java and then used these in >> SCF.java. >> The two patches are appended to this email. >> >> Greetings, >> Daniel >> >> >> "Richard Holland" wrote: >> >>> A patch would be much appreciated! >>> >>> cheers, >>> Richard >>> >>> 2008/10/31 community at struck.lu : >>> > True. It was a first quick and dirty hack to get the rest of my project >>> going. >>> > >>> > I think adding support of the IUPAC ambiguities to DNATools would be the >>> most >>> > approbate solution. The SCF class can then easily be adapted. >>> > >>> > Are there any plans to do so? >>> > If not, I could give it a try and submit a patch for DNATools and SCF. >>> > >>> > Greetings, >>> > Daniel >>> > >>> > "Richard Holland" wrote: >>> > >>> >> It is the correct method, yes. >>> >> >>> >> However your code constructs a new hash set every time it does the >>> >> check for W or S etc.. It would be much more efficient to create >>> >> class-static references to the ambiguity symbols you need, instead of >>> >> (re)creating them every time they're encountered. A class-static gap >>> >> symbol reference would also be good in this situation. >>> >> >>> >> cheers, >>> >> Richard >>> >> >>> >> >>> >> >>> >> 2008/10/31 community at struck.lu : >>> >> > Hello, >>> >> > >>> >> > >>> >> > I am using the SCF class in the context of HIV-1 population sequencing. >>> In >>> >> > this context we do have sometimes ambiguous base calls. To support them >> I >>> >> > extended the SCF class to allow for IUPAC ambiguities up to 2 >>> nucleotides. >>> >> > >>> >> > Therefore I simply added the following code to the "decode" function: >>> >> > >>> >> > ######################### >>> >> > public Symbol decode(byte call) throws IllegalSymbolException { >>> >> > >>> >> > //get the DNA Alphabet >>> >> > Alphabet dna = DNATools.getDNA(); >>> >> > >>> >> > char c = (char) call; >>> >> > switch (c) { >>> >> > case 'a': >>> >> > case 'A': >>> >> > return DNATools.a(); >>> >> > case 'c': >>> >> > case 'C': >>> >> > return DNATools.c(); >>> >> > case 'g': >>> >> > case 'G': >>> >> > return DNATools.g(); >>> >> > case 't': >>> >> > case 'T': >>> >> > return DNATools.t(); >>> >> > case 'n': >>> >> > case 'N': >>> >> > return DNATools.n(); >>> >> > case '-': >>> >> > return DNATools.getDNA().getGapSymbol(); >>> >> > case 'w': >>> >> > case 'W': >>> >> > //make the 'W' symbol >>> >> > Set symbolsThatMakeW = new HashSet(); >>> >> > symbolsThatMakeW.add(DNATools.a()); >>> >> > symbolsThatMakeW.add(DNATools.t()); >>> >> > Symbol w = dna.getAmbiguity(symbolsThatMakeW); >>> >> > return w; >>> >> > case 's': >>> >> > case 'S': >>> >> > //make the 'S' symbol >>> >> > Set symbolsThatMakeS = new HashSet(); >>> >> > symbolsThatMakeS.add(DNATools.c()); >>> >> > symbolsThatMakeS.add(DNATools.g()); >>> >> > Symbol s = dna.getAmbiguity(symbolsThatMakeS); >>> >> > return s; >>> >> > ... (and so on) >>> >> > ######################### >>> >> > >>> >> > Is this the right way to do it? And if so, how can this code be >> submitted >>> > to >>> >> > the official biojava source code? >>> >> > >>> >> > >>> >> > Best regards, >>> >> > Daniel Struck >>> >> > _________________________________________________________ >>> >> > Mail sent using root eSolutions Webmailer - www.root.lu >>> >> > >>> >> > >>> >> > _______________________________________________ >>> >> > Biojava-l mailing list - Biojava-l at lists.open-bio.org >>> >> > http://lists.open-bio.org/mailman/listinfo/biojava-l >>> >> > >>> >> >>> >> >>> > >>> > >>> > _________________________________________________________ >>> > Mail sent using root eSolutions Webmailer - www.root.lu >>> > >>> > >>> > >>> >>> >> >> >> _________________________________________________________ >> Mail sent using root eSolutions Webmailer - www.root.lu >> > > > > -- > Richard Holland, BSc MBCS > Finance Director, Eagle Genomics Ltd > M: +44 7500 438846 | E: holland at eaglegenomics.com > http://www.eaglegenomics.com/ > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From raphael.andre.bauer at gmail.com Thu Nov 6 10:07:18 2008 From: raphael.andre.bauer at gmail.com (=?UTF-8?Q?Raphael_Andr=C3=A9_Bauer?=) Date: Thu, 6 Nov 2008 11:07:18 +0100 Subject: [Biojava-l] YG and parsing error of PDB file Message-ID: <9b46aa30811060207t4c7bf77fx231877e9269af462@mail.gmail.com> hi biojava-l, i am getting the following exception: badly formatted line ... SEQRES 3 A 76 C C A G A OMC U OMG A A YG A PSU org.biojava.bio.structure.io.PDBParseException: amino acid name is not of length 3! (YG) when i am trying to parse the pdb entry 4TNA [1] (a RNA structure). It seems that YG [2] is an ordinary compound that is built into the RNA chain. is this really an error inside the PDB file, or is this something where the biojava parser confuses amino acids and hetero ids because of their lengths? is there an approved biojava way where i can catch the exception without breaking the rest of the parsing? many thanks, raphael [1] http://bioinf-services.charite.de/supersite/resultHET.faces?hetid=YG [2] http://bioinf-services.charite.de/supersite/resultPDB.faces?pdbid=4TNA From ella.veitch at gmail.com Thu Nov 6 11:38:14 2008 From: ella.veitch at gmail.com (Ella Veitch) Date: Fri, 7 Nov 2008 00:38:14 +1300 Subject: [Biojava-l] SubSequence Help Message-ID: Hi guys- new here hope this is the right medium for getting questions answered. I hope someone can shed some light as to what i am doing wrong here I am trying to extract subsequence data from a RichSequence as follows: RichSequenceIterator seqs=RichSequence.IOTools.readFastaDNA(input, ns); RichSequence rs=seqs.nextRichSequence(); return RichSequence.Tools.subSequence(rs, startCoord, endCoord,rs.getNamespace(),seqName, rs.getAccession(), rs.getIdentifier(), rs.getVersion(),rs.getSeqVersion()); When I check my result againt the expected i find that for example 5001-5175 yeilds a sequence located at 10001 and 10175 Any insights as to why? I hope so Thanks for your help Ella From holland at eaglegenomics.com Thu Nov 6 12:13:07 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Thu, 6 Nov 2008 12:13:07 +0000 Subject: [Biojava-l] SubSequence Help In-Reply-To: References: Message-ID: I've just tried to reproduce this and haven't been able to. Could you supply the full code, including the bit where you set startCoord and endCoord, and also the full file that you're working on it with? (You'll have to send them direct to me if you're using attachments as the mailing list won't accept them). cheers, Richard 2008/11/6 Ella Veitch : > Hi guys- new here hope this is the right medium for getting questions > answered. > > I hope someone can shed some light as to what i am doing wrong here > I am trying to extract subsequence data from a RichSequence as follows: > > RichSequenceIterator seqs=RichSequence.IOTools.readFastaDNA(input, > ns); > RichSequence rs=seqs.nextRichSequence(); > > return RichSequence.Tools.subSequence(rs, startCoord, > endCoord,rs.getNamespace(),seqName, > rs.getAccession(), rs.getIdentifier(), > rs.getVersion(),rs.getSeqVersion()); > > When I check my result againt the expected i find that for example 5001-5175 > yeilds a sequence located at 10001 and 10175 > > Any insights as to why? > > I hope so > > Thanks for your help > > Ella > > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From andreas at sdsc.edu Thu Nov 6 16:20:06 2008 From: andreas at sdsc.edu (Andreas Prlic) Date: Thu, 6 Nov 2008 08:20:06 -0800 Subject: [Biojava-l] YG and parsing error of PDB file In-Reply-To: <9b46aa30811060207t4c7bf77fx231877e9269af462@mail.gmail.com> References: <9b46aa30811060207t4c7bf77fx231877e9269af462@mail.gmail.com> Message-ID: <59a41c430811060820o43f99eber6d52c1a288b1ad22@mail.gmail.com> Hi Raphael, The parsing is perhaps a bit verbose and might be misleading in this case. It does not break or stop after printing this exception. If you investigate the loaded structure object in the end you can see that the toString() looks like this: structure 4TNA IdCode: 4TNA Classification: AMINO-ACID TRANSPORT DepDate: Wed Apr 12 00:00:00 PST 1978 Technique: X-RAY DIFFRACTION Resolution: 2.5 ModDate: Tue Apr 01 00:00:00 PST 2003 Title: FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE chains: chain 0: >A< TRNAPHE length SEQRES: 0 length ATOM: 76 aminos: 0 hetatms: 14 nucleotides: 62 chain 1: > < length SEQRES: 0 length ATOM: 4 aminos: 0 hetatms: 4 nucleotides: 0 Andreas On Thu, Nov 6, 2008 at 2:07 AM, Raphael Andr? Bauer wrote: > hi biojava-l, > > > i am getting the following exception: > > badly formatted line ... SEQRES 3 A 76 C C A G A OMC U > OMG A A YG A PSU > org.biojava.bio.structure.io.PDBParseException: amino acid name is not > of length 3! (YG) > > > when i am trying to parse the pdb entry 4TNA [1] (a RNA structure). It > seems that YG [2] is an ordinary compound that is built into the RNA chain. > > > is this really an error inside the PDB file, or is this something > where the biojava parser confuses amino acids and hetero ids because of > their lengths? is there an approved biojava way where i can catch the > exception without breaking the rest of the parsing? > > > many thanks, > > raphael > > [1] http://bioinf-services.charite.de/supersite/resultHET.faces?hetid=YG > [2] http://bioinf-services.charite.de/supersite/resultPDB.faces?pdbid=4TNA > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > From raphael.andre.bauer at gmail.com Thu Nov 6 16:24:39 2008 From: raphael.andre.bauer at gmail.com (=?UTF-8?Q?Raphael_Andr=C3=A9_Bauer?=) Date: Thu, 6 Nov 2008 17:24:39 +0100 Subject: [Biojava-l] YG and parsing error of PDB file In-Reply-To: <59a41c430811060820o43f99eber6d52c1a288b1ad22@mail.gmail.com> References: <9b46aa30811060207t4c7bf77fx231877e9269af462@mail.gmail.com> <59a41c430811060820o43f99eber6d52c1a288b1ad22@mail.gmail.com> Message-ID: <9b46aa30811060824q6a27e1a6u49281b6e1722a947@mail.gmail.com> On Thu, Nov 6, 2008 at 5:20 PM, Andreas Prlic wrote: > Hi Raphael, > > The parsing is perhaps a bit verbose and might be misleading in this > case. It does not break or stop after printing this exception. If you > investigate the loaded structure object in the end you can see that > the toString() looks like this: ... you are right. i was a bit too quick here. one question still remains: do you know if the exception is "ok" in terms of the PDB file format or simply "wrong" because the exception thrown by the parser is wrong (or the parsing wents wrong?). if it is "wrong" i could easily fix it i guess. thanks for your help! raphael > > structure 4TNA IdCode: 4TNA Classification: AMINO-ACID TRANSPORT > DepDate: Wed Apr 12 00:00:00 PST 1978 Technique: X-RAY DIFFRACTION > Resolution: 2.5 ModDate: Tue Apr 01 00:00:00 PST 2003 Title: FURTHER > REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE > chains: > chain 0: >A< TRNAPHE > length SEQRES: 0 length ATOM: 76 aminos: 0 hetatms: 14 nucleotides: 62 > chain 1: > < > length SEQRES: 0 length ATOM: 4 aminos: 0 hetatms: 4 nucleotides: 0 > > Andreas > > On Thu, Nov 6, 2008 at 2:07 AM, Raphael Andr? Bauer > wrote: >> hi biojava-l, >> >> >> i am getting the following exception: >> >> badly formatted line ... SEQRES 3 A 76 C C A G A OMC U >> OMG A A YG A PSU >> org.biojava.bio.structure.io.PDBParseException: amino acid name is not >> of length 3! (YG) >> >> >> when i am trying to parse the pdb entry 4TNA [1] (a RNA structure). It >> seems that YG [2] is an ordinary compound that is built into the RNA chain. >> >> >> is this really an error inside the PDB file, or is this something >> where the biojava parser confuses amino acids and hetero ids because of >> their lengths? is there an approved biojava way where i can catch the >> exception without breaking the rest of the parsing? >> >> >> many thanks, >> >> raphael >> >> [1] http://bioinf-services.charite.de/supersite/resultHET.faces?hetid=YG >> [2] http://bioinf-services.charite.de/supersite/resultPDB.faces?pdbid=4TNA >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> > From engelmark at fh-bingen.de Thu Nov 6 20:33:07 2008 From: engelmark at fh-bingen.de (Markus Engel) Date: Thu, 06 Nov 2008 21:33:07 +0100 Subject: [Biojava-l] SequenceLogo Message-ID: <49135483.8000906@fh-bingen.de> Hi! I'm completely new and unfamiliar with the BioJava-Project. I'm trying to draw a sequence logo, but I have no idea how it works. A simple example or howto would be sufficient for the moment. At least I hope it is. If somebody could tell me, what I need and how it is done, I would be very grateful! best regards Markus Engel From holland at eaglegenomics.com Fri Nov 7 01:16:57 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Fri, 7 Nov 2008 01:16:57 +0000 Subject: [Biojava-l] SequenceLogo In-Reply-To: <49135483.8000906@fh-bingen.de> References: <49135483.8000906@fh-bingen.de> Message-ID: Hello. You need to do three things. First, you need to get your sequence alignment. This will involve constructing one yourself, or parsing it from a file. How you do this depends entirely on what form your alignment data is in. Second, you must convert your sequence alignment into a distribution. You can do this by using DistributionTools.distOverAlignment() and passing in your alignment: http://biojava.org/docs/api/org/biojava/bio/dist/DistributionTools.html#distOverAlignment(org.biojava.bio.symbol.Alignment) Lastly, you need to pass your distribution into an instance of DistributionLogo in order to render the logo: http://biojava.org/docs/api/org/biojava/bio/gui/DistributionLogo.html cheers, Richard 2008/11/6 Markus Engel : > Hi! > > I'm completely new and unfamiliar with the BioJava-Project. > I'm trying to draw a sequence logo, but I have no idea how it works. > A simple example or howto would be sufficient for the moment. At least I > hope it is. > If somebody could tell me, what I need and how it is done, I would be very > grateful! > > best regards > Markus Engel > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From andreas at sdsc.edu Fri Nov 7 07:26:10 2008 From: andreas at sdsc.edu (Andreas Prlic) Date: Thu, 6 Nov 2008 23:26:10 -0800 Subject: [Biojava-l] YG and parsing error of PDB file In-Reply-To: <9b46aa30811060824q6a27e1a6u49281b6e1722a947@mail.gmail.com> References: <9b46aa30811060207t4c7bf77fx231877e9269af462@mail.gmail.com> <59a41c430811060820o43f99eber6d52c1a288b1ad22@mail.gmail.com> <9b46aa30811060824q6a27e1a6u49281b6e1722a947@mail.gmail.com> Message-ID: <59a41c430811062326u79ce447eo55cd3d0b35488f5b@mail.gmail.com> Hi Raphael, I don't think anything is wrong in particular. YG is a modified nucleotide (Wybutosine, found at 3' to the anticodon, in eukaryotic tRNA-PHE). At the present, the parser reads YG as a group in the atoms section, but does not understand what YG means if found in the SEQRES. Is there anything you would like to be able to do with it? Andreas On Thu, Nov 6, 2008 at 8:24 AM, Raphael Andr? Bauer wrote: > On Thu, Nov 6, 2008 at 5:20 PM, Andreas Prlic wrote: >> Hi Raphael, >> >> The parsing is perhaps a bit verbose and might be misleading in this >> case. It does not break or stop after printing this exception. If you >> investigate the loaded structure object in the end you can see that >> the toString() looks like this: > ... you are right. i was a bit too quick here. one question still remains: do > you know if the exception is "ok" in terms of the PDB file format or > simply "wrong" > because the exception thrown by the parser is wrong (or the parsing > wents wrong?). > if it is "wrong" i could easily fix it i guess. > > thanks for your help! > > raphael > > > > > >> >> structure 4TNA IdCode: 4TNA Classification: AMINO-ACID TRANSPORT >> DepDate: Wed Apr 12 00:00:00 PST 1978 Technique: X-RAY DIFFRACTION >> Resolution: 2.5 ModDate: Tue Apr 01 00:00:00 PST 2003 Title: FURTHER >> REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE >> chains: >> chain 0: >A< TRNAPHE >> length SEQRES: 0 length ATOM: 76 aminos: 0 hetatms: 14 nucleotides: 62 >> chain 1: > < >> length SEQRES: 0 length ATOM: 4 aminos: 0 hetatms: 4 nucleotides: 0 >> >> Andreas >> >> On Thu, Nov 6, 2008 at 2:07 AM, Raphael Andr? Bauer >> wrote: >>> hi biojava-l, >>> >>> >>> i am getting the following exception: >>> >>> badly formatted line ... SEQRES 3 A 76 C C A G A OMC U >>> OMG A A YG A PSU >>> org.biojava.bio.structure.io.PDBParseException: amino acid name is not >>> of length 3! (YG) >>> >>> >>> when i am trying to parse the pdb entry 4TNA [1] (a RNA structure). It >>> seems that YG [2] is an ordinary compound that is built into the RNA chain. >>> >>> >>> is this really an error inside the PDB file, or is this something >>> where the biojava parser confuses amino acids and hetero ids because of >>> their lengths? is there an approved biojava way where i can catch the >>> exception without breaking the rest of the parsing? >>> >>> >>> many thanks, >>> >>> raphael >>> >>> [1] http://bioinf-services.charite.de/supersite/resultHET.faces?hetid=YG >>> [2] http://bioinf-services.charite.de/supersite/resultPDB.faces?pdbid=4TNA >>> _______________________________________________ >>> Biojava-l mailing list - Biojava-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/biojava-l >>> >> > From community at struck.lu Fri Nov 7 10:06:29 2008 From: community at struck.lu (community at struck.lu) Date: Fri, 07 Nov 2008 11:06:29 +0100 Subject: [Biojava-l] SCF: support for ambiguities In-Reply-To: References: Message-ID: Thank you, Daniel "Richard Holland" wrote: > This has now been applied to the trunk of biojava-live. > > cheers, > Richard > > 2008/11/3 Richard Holland : > > Thanks for the fix. I'll review this and get back to you in a couple of > days. > > > > cheers, > > Richard > > > > 2008/11/3 community at struck.lu : > >> I have added the missing ambiguities to DNATools.java and then used these > in > >> SCF.java. > >> The two patches are appended to this email. > >> > >> Greetings, > >> Daniel > >> > >> > >> "Richard Holland" wrote: > >> > >>> A patch would be much appreciated! > >>> > >>> cheers, > >>> Richard > >>> > >>> 2008/10/31 community at struck.lu : > >>> > True. It was a first quick and dirty hack to get the rest of my project > >>> going. > >>> > > >>> > I think adding support of the IUPAC ambiguities to DNATools would be the > >>> most > >>> > approbate solution. The SCF class can then easily be adapted. > >>> > > >>> > Are there any plans to do so? > >>> > If not, I could give it a try and submit a patch for DNATools and SCF. > >>> > > >>> > Greetings, > >>> > Daniel > >>> > > >>> > "Richard Holland" wrote: > >>> > > >>> >> It is the correct method, yes. > >>> >> > >>> >> However your code constructs a new hash set every time it does the > >>> >> check for W or S etc.. It would be much more efficient to create > >>> >> class-static references to the ambiguity symbols you need, instead of > >>> >> (re)creating them every time they're encountered. A class-static gap > >>> >> symbol reference would also be good in this situation. > >>> >> > >>> >> cheers, > >>> >> Richard > >>> >> > >>> >> > >>> >> > >>> >> 2008/10/31 community at struck.lu : > >>> >> > Hello, > >>> >> > > >>> >> > > >>> >> > I am using the SCF class in the context of HIV-1 population > sequencing. > >>> In > >>> >> > this context we do have sometimes ambiguous base calls. To support > them > >> I > >>> >> > extended the SCF class to allow for IUPAC ambiguities up to 2 > >>> nucleotides. > >>> >> > > >>> >> > Therefore I simply added the following code to the "decode" function: > >>> >> > > >>> >> > ######################### > >>> >> > public Symbol decode(byte call) throws IllegalSymbolException > { > >>> >> > > >>> >> > //get the DNA Alphabet > >>> >> > Alphabet dna = DNATools.getDNA(); > >>> >> > > >>> >> > char c = (char) call; > >>> >> > switch (c) { > >>> >> > case 'a': > >>> >> > case 'A': > >>> >> > return DNATools.a(); > >>> >> > case 'c': > >>> >> > case 'C': > >>> >> > return DNATools.c(); > >>> >> > case 'g': > >>> >> > case 'G': > >>> >> > return DNATools.g(); > >>> >> > case 't': > >>> >> > case 'T': > >>> >> > return DNATools.t(); > >>> >> > case 'n': > >>> >> > case 'N': > >>> >> > return DNATools.n(); > >>> >> > case '-': > >>> >> > return DNATools.getDNA().getGapSymbol(); > >>> >> > case 'w': > >>> >> > case 'W': > >>> >> > //make the 'W' symbol > >>> >> > Set symbolsThatMakeW = new HashSet(); > >>> >> > symbolsThatMakeW.add(DNATools.a()); > >>> >> > symbolsThatMakeW.add(DNATools.t()); > >>> >> > Symbol w = dna.getAmbiguity(symbolsThatMakeW); > >>> >> > return w; > >>> >> > case 's': > >>> >> > case 'S': > >>> >> > //make the 'S' symbol > >>> >> > Set symbolsThatMakeS = new HashSet(); > >>> >> > symbolsThatMakeS.add(DNATools.c()); > >>> >> > symbolsThatMakeS.add(DNATools.g()); > >>> >> > Symbol s = dna.getAmbiguity(symbolsThatMakeS); > >>> >> > return s; > >>> >> > ... (and so on) > >>> >> > ######################### > >>> >> > > >>> >> > Is this the right way to do it? And if so, how can this code be > >> submitted > >>> > to > >>> >> > the official biojava source code? > >>> >> > > >>> >> > > >>> >> > Best regards, > >>> >> > Daniel Struck > >>> >> > _________________________________________________________ > >>> >> > Mail sent using root eSolutions Webmailer - www.root.lu > >>> >> > > >>> >> > > >>> >> > _______________________________________________ > >>> >> > Biojava-l mailing list - Biojava-l at lists.open-bio.org > >>> >> > http://lists.open-bio.org/mailman/listinfo/biojava-l > >>> >> > > >>> >> > >>> >> > >>> > > >>> > > >>> > _________________________________________________________ > >>> > Mail sent using root eSolutions Webmailer - www.root.lu > >>> > > >>> > > >>> > > >>> > >>> > >> > >> > >> _________________________________________________________ > >> Mail sent using root eSolutions Webmailer - www.root.lu > >> > > > > > > > > -- > > Richard Holland, BSc MBCS > > Finance Director, Eagle Genomics Ltd > > M: +44 7500 438846 | E: holland at eaglegenomics.com > > http://www.eaglegenomics.com/ > > > > _________________________________________________________ Mail sent using root eSolutions Webmailer - www.root.lu From ixiivilibra at gmail.com Fri Nov 7 12:20:45 2008 From: ixiivilibra at gmail.com (Shenk.Time) Date: Fri, 7 Nov 2008 20:20:45 +0800 Subject: [Biojava-l] Questions about downloading sequences from DataBanks Message-ID: Hi friends! I am a preliminary learner of Biojava, and I just joined this booming organization some days ago. Apparently, Biojava is not a simple system, although there are a lot of examples on the website against so much more functions. Actually, the motivation of my starting to focus on it is I want to download sequences of genes, genomes or proteins freely and automatically. Gradually, with the progress of my learning, I found that it is a very useful tool for processing biological data. And I also like the conception model of biological entities expressed in Biojava. However, my problem still exists. I have been searching the answer for almost one month. It has disturbed me so much. How can I download the sequence data from NCBI or EBI freely, massively and automatically? Does Biojava have this function? If it does, then how can I do it? What Classes, Functions or packages should I learn? As I already knew, NCBI supports a kind of web service named 'eUtility'. The SOAP/WSDL model is recommended by them. Once, I used the Axis2 (developed by Apache) and the wsdl file (a URL on their website) to produce '*stub.java' files successfully on my computer. Because of the various versions, I had to produce groups of '*stub.java' files and *stub-like classes. And I have also tested those examples they give out. But, that is all. There is no documentation! It is difficult to understand how to use all the functions of their API by reading the source code. So, if Biojava has no ability to solve this problem, then what should I do? I want to ask some help from you precursors and colleagues. Thank you very much! Best regards. Shenk Time From holland at eaglegenomics.com Fri Nov 7 13:09:03 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Fri, 7 Nov 2008 13:09:03 +0000 Subject: [Biojava-l] Questions about downloading sequences from DataBanks In-Reply-To: References: Message-ID: Hello. The basic way of fetching a load of sequences from eutils by specifying a set of Genbank IDs can be done using this: http://biojava.org/docs/api/org/biojavax/bio/db/ncbi/GenbankRichSequenceDB.html If you want to specify more complex queries for locating sequences other than just by ID, you'll need to make a copy of GenbankRichSequenceDB and modify it to allow such queries. It uses the direct URL method for interacting with Entrez/eutils, and so with your modified class you'll be able to do anything that the webservice can do via URL requests. cheers, Richard 2008/11/7 Shenk.Time : > Hi friends! > > I am a preliminary learner of Biojava, and I just joined this booming > organization some days ago. Apparently, Biojava is not a simple system, > although there are a lot of examples on the website against so much more > functions. Actually, the motivation of my starting to focus on it is I want > to download sequences of genes, genomes or proteins freely and > automatically. Gradually, with the progress of my learning, I found that it > is a very useful tool for processing biological data. And I also like the > conception model of biological entities expressed in Biojava. However, my > problem still exists. I have been searching the answer for almost one month. > It has disturbed me so much. > > How can I download the sequence data from NCBI or EBI freely, massively and > automatically? Does Biojava have this function? If it does, then how can I > do it? What Classes, Functions or packages should I learn? > > As I already knew, NCBI supports a kind of web service named 'eUtility'. The > SOAP/WSDL model is recommended by them. Once, I used the Axis2 (developed by > Apache) and the wsdl file (a URL on their website) to produce '*stub.java' > files successfully on my computer. Because of the various versions, I had to > produce groups of '*stub.java' files and *stub-like classes. And I have also > tested those examples they give out. But, that is all. There is no > documentation! It is difficult to understand how to use all the functions of > their API by reading the source code. > > So, if Biojava has no ability to solve this problem, then what should I > do? > > I want to ask some help from you precursors and colleagues. Thank you very > much! > > > > Best regards. > > > > > > Shenk Time > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From ixiivilibra at gmail.com Sun Nov 9 06:02:51 2008 From: ixiivilibra at gmail.com (Shenk.Time) Date: Sun, 9 Nov 2008 14:02:51 +0800 Subject: [Biojava-l] questions Message-ID: Hi, Does anybody know how to build an object of a linkage in a web page? For example, http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=182086 is a standard page in NCBI (it belongs to an example in the cookbook, the ID is M98343). I want to build an object referred to keywords 'gene','CDS' and 'polyA_signal'.Then recursively, I can build objects in these pages. So I just want to ask what should I do,and what should I check in Biojava API. Thank you very much! Best -- Shenk.C.Time From aumanga at biggjapan.com Mon Nov 10 06:57:33 2008 From: aumanga at biggjapan.com (Ashika Umanga Umagiliya) Date: Mon, 10 Nov 2008 15:57:33 +0900 Subject: [Biojava-l] Blast XML output problem with multiple sequences Message-ID: <4917DB5D.6070005@biggjapan.com> Hi guys, I have a question with blastall. I use blast-2.2.18 on debian linux. I execute 'blastall' from my java application.I use m -7 parameter to get the result as an XML file. When my input file has more than one sequences like , >id 1 ytfgqgtk >id 2 leikrkr my output xml file actually contains two separate XML files appended together , like : .. .. .. .. How can i get my results in one XML file,so that i can process it easily? Thanks in advance, umanga From aumanga at biggjapan.com Mon Nov 10 07:50:20 2008 From: aumanga at biggjapan.com (Ashika Umanga Umagiliya) Date: Mon, 10 Nov 2008 16:50:20 +0900 Subject: [Biojava-l] Blast XML output with multiple sequences Message-ID: <4917E7BC.50402@biggjapan.com> Hi guys, Sorry if this mail has been posted twice.. I have a question with blastall. I use blast-2.2.18 on debian linux. I execute 'blastall' from my java application.I use m -7 parameter to get the result as an XML file. When my input file has more than one sequences like , >id 1 ytfgqgtk >id 2 leikrkr my output xml file actually contains two separate XML files appended together , like : .. .. .. .. How can i get my results in one XML file,so that i can process it easily? Thanks in advance, umanga From aumanga at biggjapan.com Mon Nov 10 08:50:54 2008 From: aumanga at biggjapan.com (Ashika Umanga Umagiliya) Date: Mon, 10 Nov 2008 17:50:54 +0900 Subject: [Biojava-l] Blast XML output with multiple sequences In-Reply-To: <4917F354.30006@imbusch.net> References: <4917E7BC.50402@biggjapan.com> <4917F354.30006@imbusch.net> Message-ID: <4917F5EE.8050608@biggjapan.com> Hi charles and all, Here is one of my actual input.txt : >seq 1 dssfyic >seq 2 dssfyic And here is the result output for this. output.xml its actually two appended XML files ???? blastp blastp 2.2.18 [Mar-02-2008] ~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs", Nucleic Acids Res. 25:3389-3402. /work/mysizuka-web/mysizouka2/src/main/webapp/WEB-INF/blast/db/tcrDB /work/mysizuka-web/mysizouka2/src/main/webapp/WEB-INF/blast/db/mabDB lcl|QUERY seq 1 7 BLOSUM62 10 11 1 F 1 6238 565098 0 4.6796e+07 0.041 0.267 0.14 No hits found blastp blastp 2.2.18 [Mar-02-2008] ~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs", Nucleic Acids Res. 25:3389-3402. /work/mysizuka-web/mysizouka2/src/main/webapp/WEB-INF/blast/db/tcrDB /work/mysizuka-web/mysizouka2/src/main/webapp/WEB-INF/blast/db/mabDB lcl|QUERY seq 2 7 BLOSUM62 10 11 1 F 1 6238 565098 0 4.6796e+07 0.041 0.267 0.14 No hits found Charles Imbusch wrote: > Hello Umanga, > > in my understanding blast always writes all results to one file > according to the sequences specified in the input file. > > So you could split the input file with multiple sequences into > files containing one sequence each. > > cheers, > Charles > > From charles at imbusch.net Mon Nov 10 08:39:48 2008 From: charles at imbusch.net (Charles Imbusch) Date: Mon, 10 Nov 2008 09:39:48 +0100 Subject: [Biojava-l] Blast XML output with multiple sequences In-Reply-To: <4917E7BC.50402@biggjapan.com> References: <4917E7BC.50402@biggjapan.com> Message-ID: <4917F354.30006@imbusch.net> Hello Umanga, in my understanding blast always writes all results to one file according to the sequences specified in the input file. So you could split the input file with multiple sequences into files containing one sequence each. cheers, Charles From raphael.andre.bauer at gmail.com Mon Nov 10 13:05:13 2008 From: raphael.andre.bauer at gmail.com (=?UTF-8?Q?Raphael_Andr=C3=A9_Bauer?=) Date: Mon, 10 Nov 2008 14:05:13 +0100 Subject: [Biojava-l] YG and parsing error of PDB file In-Reply-To: <59a41c430811062326u79ce447eo55cd3d0b35488f5b@mail.gmail.com> References: <9b46aa30811060207t4c7bf77fx231877e9269af462@mail.gmail.com> <59a41c430811060820o43f99eber6d52c1a288b1ad22@mail.gmail.com> <9b46aa30811060824q6a27e1a6u49281b6e1722a947@mail.gmail.com> <59a41c430811062326u79ce447eo55cd3d0b35488f5b@mail.gmail.com> Message-ID: <9b46aa30811100505w7046cd5cl8bea465ae36d0995@mail.gmail.com> On Fri, Nov 7, 2008 at 8:26 AM, Andreas Prlic wrote: > Hi Raphael, > > I don't think anything is wrong in particular. YG is a modified > nucleotide (Wybutosine, found at 3' to the anticodon, in eukaryotic > tRNA-PHE). At the present, the parser reads YG as a group in the > atoms section, but does not understand what YG means if found in the > SEQRES. Is there anything you would like to be able to do with it? I think how it is handled now is ok for me (just a short notice about the unknown YG). Thanks! Raphael > > Andreas > > > > > On Thu, Nov 6, 2008 at 8:24 AM, Raphael Andr? Bauer > wrote: >> On Thu, Nov 6, 2008 at 5:20 PM, Andreas Prlic wrote: >>> Hi Raphael, >>> >>> The parsing is perhaps a bit verbose and might be misleading in this >>> case. It does not break or stop after printing this exception. If you >>> investigate the loaded structure object in the end you can see that >>> the toString() looks like this: >> ... you are right. i was a bit too quick here. one question still remains: do >> you know if the exception is "ok" in terms of the PDB file format or >> simply "wrong" >> because the exception thrown by the parser is wrong (or the parsing >> wents wrong?). >> if it is "wrong" i could easily fix it i guess. >> >> thanks for your help! >> >> raphael >> >> >> >> >> >>> >>> structure 4TNA IdCode: 4TNA Classification: AMINO-ACID TRANSPORT >>> DepDate: Wed Apr 12 00:00:00 PST 1978 Technique: X-RAY DIFFRACTION >>> Resolution: 2.5 ModDate: Tue Apr 01 00:00:00 PST 2003 Title: FURTHER >>> REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE >>> chains: >>> chain 0: >A< TRNAPHE >>> length SEQRES: 0 length ATOM: 76 aminos: 0 hetatms: 14 nucleotides: 62 >>> chain 1: > < >>> length SEQRES: 0 length ATOM: 4 aminos: 0 hetatms: 4 nucleotides: 0 >>> >>> Andreas >>> >>> On Thu, Nov 6, 2008 at 2:07 AM, Raphael Andr? Bauer >>> wrote: >>>> hi biojava-l, >>>> >>>> >>>> i am getting the following exception: >>>> >>>> badly formatted line ... SEQRES 3 A 76 C C A G A OMC U >>>> OMG A A YG A PSU >>>> org.biojava.bio.structure.io.PDBParseException: amino acid name is not >>>> of length 3! (YG) >>>> >>>> >>>> when i am trying to parse the pdb entry 4TNA [1] (a RNA structure). It >>>> seems that YG [2] is an ordinary compound that is built into the RNA chain. >>>> >>>> >>>> is this really an error inside the PDB file, or is this something >>>> where the biojava parser confuses amino acids and hetero ids because of >>>> their lengths? is there an approved biojava way where i can catch the >>>> exception without breaking the rest of the parsing? >>>> >>>> >>>> many thanks, >>>> >>>> raphael >>>> >>>> [1] http://bioinf-services.charite.de/supersite/resultHET.faces?hetid=YG >>>> [2] http://bioinf-services.charite.de/supersite/resultPDB.faces?pdbid=4TNA >>>> _______________________________________________ >>>> Biojava-l mailing list - Biojava-l at lists.open-bio.org >>>> http://lists.open-bio.org/mailman/listinfo/biojava-l >>>> >>> >> > From anisahghoorah at hotmail.com Mon Nov 10 16:35:19 2008 From: anisahghoorah at hotmail.com (Anisah Ghoorah) Date: Mon, 10 Nov 2008 16:35:19 +0000 Subject: [Biojava-l] blast parser multiple iteration Message-ID: Hi Does BioJava 1.6 BlastXMLParser handle multiple iteration entries in the blast output xml file? Thanks Anisah Hi Ali, that's good news, can you send your patch to this list, so we can have a look? At this stage it would be also great to provide a new Junit test that makes sure that the parsing works ok and to demonstrate the new feature. If you provide more patches in the future we can also set up write access to the SVN repository. Andreas On Tue, Aug 19, 2008 at 6:10 AM, Muhammad Ali wrote: > Hello, > > The current version of the BlastXMLParser (used for parsing NCBI BLAST > output files) is not handling multiple Iteration entries in the file > correctly. It lumps them all together, resulting in a loss of > search-specific parameters. The end result is a single > SeqSimilaritySearchResult object. The expected output should be one > SeqSimilaritySearchResult for each Iteration entry in the file. > > I've fixed this issue on my locally checked out copy by modifying a > few files in the org.biojava.bio.program.sax.blastxml package. I'm > interested in submitting the updated code back to the main repository. > Can someone tell me how I can go about doing so? > > Also the javadocs for the BlastXMLParser seem to be outdated. They > mention malformed XML being generated by NCBI, but that doesn't seem > to be the case anymore. > > Thanks, > Ali. > _______________________________________________ > biojava-dev mailing list > biojava-dev at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-dev > _________________________________________________________________ Win ?1000 John Lewis shopping sprees with BigSnapSearch.com http://clk.atdmt.com/UKM/go/117442309/direct/01/ From aumanga at biggjapan.com Wed Nov 12 09:12:52 2008 From: aumanga at biggjapan.com (Ashika Umanga Umagiliya) Date: Wed, 12 Nov 2008 18:12:52 +0900 Subject: [Biojava-l] Retrieve PDB file from id Message-ID: <491A9E14.2040606@biggjapan.com> Hi guys, I am going to embedd JMol applet into my web application.And i want to retrieve PDB file from a remote database when the PDBID is given. Then I can load it with JMol. Is there such service which I can use ? thanks in advance, umanga From aumanga at biggjapan.com Wed Nov 12 09:16:49 2008 From: aumanga at biggjapan.com (Ashika Umanga Umagiliya) Date: Wed, 12 Nov 2008 18:16:49 +0900 Subject: [Biojava-l] Retrieve PDB file from id In-Reply-To: <491A9E14.2040606@biggjapan.com> References: <491A9E14.2040606@biggjapan.com> Message-ID: <491A9F01.3060403@biggjapan.com> Hi guys, I came up with this webservice : WSDBFetch service provided by the European Bioinformatics Institute I guess this service will do what i needed. thanks Ashika Umanga Umagiliya wrote: > Hi guys, > > I am going to embedd JMol applet into my web application.And i want to > retrieve PDB file from a remote database when the PDBID is given. > Then I can load it with JMol. > Is there such service which I can use ? > > thanks in advance, > umanga > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > From jw12 at sanger.ac.uk Wed Nov 12 11:12:31 2008 From: jw12 at sanger.ac.uk (Jonathan Warren) Date: Wed, 12 Nov 2008 11:12:31 +0000 Subject: [Biojava-l] Sharing and Collecting Biological Annotations Message-ID: <1226488351.4881.46.camel@deskpro20727.dynamic.sanger.ac.uk> DAS is currently being used to share annotations on genomes, protein alignments, structural and interaction information. If you are interested in sharing biological information the DAS workshop below may be of interest to you. Registration is open for the 2009 DAS workshop (8,9,10th March) at the Genome Campus, Hinxton UK. If you are interested in attending, please find out more by going to http://www.dasregistry.org/course.jsp and register via the web link at the bottom of the page. This workshop will cater for novice to expert DAS users as each day is optional. Closing date for registration is 1st Feb 2009. If you register now you can change the details of your registration any time up until this closing date. Please register early as places will be limited. Also if you would be interested in presenting your work please write to Jonathan Warren at jw12 at sanger.ac.uk with a synopsis and a title. -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. From andreas at sdsc.edu Wed Nov 12 15:45:37 2008 From: andreas at sdsc.edu (Andreas Prlic) Date: Wed, 12 Nov 2008 07:45:37 -0800 Subject: [Biojava-l] Retrieve PDB file from id In-Reply-To: <491A9E14.2040606@biggjapan.com> References: <491A9E14.2040606@biggjapan.com> Message-ID: <59a41c430811120745p5ec5fa6gea1957ad36e5f46b@mail.gmail.com> Hi Ashika, this is more a question for the Jmol mailing list, but to give you a quick reply: the jmol applet can load the PDB files directly from a server, you don;t need to pre-load it... If you want to load a PDB file from remote you can also talk to the RCSB or EBI ftp servers. Cheers, Andreas On Wed, Nov 12, 2008 at 1:12 AM, Ashika Umanga Umagiliya wrote: > Hi guys, > > I am going to embedd JMol applet into my web application.And i want to > retrieve PDB file from a remote database when the PDBID is given. > Then I can load it with JMol. > Is there such service which I can use ? > > thanks in advance, > umanga > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > From pzgyuanf at gmail.com Sat Nov 15 06:11:47 2008 From: pzgyuanf at gmail.com (pprun) Date: Sat, 15 Nov 2008 14:11:47 +0800 Subject: [Biojava-l] An Exception Has Occurred During Parsing ensembl Genbank file Homo_sapiens.0.dat Message-ID: Environments: ------------- Biojava: 1.6 Java: 1.6.0_10; Java HotSpot(TM) Client VM 11.0-b15 System: Linux version 2.6.24-21-generic running on i386; UTF-8; zh_CN The detail: -------------- Format_object=org.biojavax.bio.seq.io.GenbankFormat Accession=chromosome:NCBI36:X:101815144:102815143:1 Id=null Comments=Bad dbxref Parse_block=FEATURES Location/Qualifierssource 1..1000000/organism "Homo sapiens"/db_xref "taxon:9606"gene complement(5148..5254)/gene ENSG00000193147/locus_tag "AL035427.17"misc_RNA complement(5148..5254)/gene "ENSG00000193147"/db_xref "Clone_based_ensembl_transcri:AL035427.17-201"/db_xref "RFAM:RF00026"/db_xref "AFFY_HuEx_1_0_st_v2:3985294"/note "snRNA"/note "transcript_id=ENST00000348857"gene 32225..32681/gene ENSG00000220050/locus_tag "RP4-769N13.2"misc_RNA 32225..32681/gene "ENSG00000220050"/db_xref "AgilentProbe:A_32_P940920"/db_xref "Clone_based_vega_transcript:RP4-769N13.2-001"/db_xref "OTTT:OTTHUMT00000057625"/note "processed_pseudogene"/note "transcript_id=ENST00000405532"gene 38617..44173/gene ENSG00000158301/locus_tag "GPRASP2"/note "G-protein coupled receptor-associated sorting protein 2 (GASP-2). [Source:Uniprot/SWISSPROT;Acc:Q96D09]"mRNA join(38617..38993,40223..40290,40630..40707,40978..44173)/gene "ENSG00000158301"/note "transcript_id=ENST00000332262"CDS 41311..43827/gene "ENSG00000158301"/protein_id "ENSP00000339057"/note "transcript_id=ENST00000332262"/db_xref "HGNC:GPRASP2"/db_xref "CCDS:CCDS14501.1"/db_xref "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref "RefSeq_peptide:NP_001004051.1"/db_xref "RefSeq_peptide:NP_612446.1"/db_xref "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:GPRASP2-001"/db_xref "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref "UniGene:Hs.603154"/db_xref "protein_id:AAH13576.1"/db_xref "protein_id:AAH36772.1"/db_xref "protein_id:BAC04010.1"/db_xref "protein_id:BAC04692.1"/db_xref "protein_id:CAI43060.1"/db_xref "AFFY_HG_U133B:228027_at"/db_xref "AFFY_HG_U133_Plus_2:228027_at"/db_xref "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref "AFFY_HuEx_1_0_st_v2:4016236"/db_xref "AFFY_HuEx_1_0_st_v2:4016243"/db_xref "AFFY_HuEx_1_0_st_v2:4016244"/db_xref "AFFY_HuEx_1_0_st_v2:4016261"/db_xref "AFFY_HuEx_1_0_st_v2:4016262"/db_xref "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref "Illumina_V2:ILMN_8313"/db_xref "OTTT:OTTHUMT00000057626"/db_xref "shares_CDS_with_OTTT:GPRASP2-001"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057626"/translation "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"mRNA join(38853..38993,39571..39658,40223..40290,40630..40707, 40978..44173)/gene "ENSG00000158301"/note "transcript_id=ENST00000340885"CDS 41311..43827/gene "ENSG00000158301"/protein_id "ENSP00000342986"/note "transcript_id=ENST00000340885"/db_xref "CCDS:CCDS14501.1"/db_xref "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref "RefSeq_peptide:NP_001004051.1"/db_xref "RefSeq_peptide:NP_612446.1"/db_xref "RefSeq_dna:NM_001004051"/db_xref "RefSeq_dna:NM_138437"/db_xref "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref "HGNC_automatic_transcript:GPRASP2-201"/db_xref "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref "UniGene:Hs.603154"/db_xref "UniGene:Hs.656888"/db_xref "protein_id:AAH13576.1"/db_xref "protein_id:AAH36772.1"/db_xref "protein_id:BAC04010.1"/db_xref "protein_id:BAC04692.1"/db_xref "protein_id:CAI43060.1"/db_xref "AFFY_HG_U133B:228027_at"/db_xref "AFFY_HG_U133_Plus_2:228027_at"/db_xref "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref "AFFY_HuEx_1_0_st_v2:4016244"/db_xref "AFFY_HuEx_1_0_st_v2:4016261"/db_xref "AFFY_HuEx_1_0_st_v2:4016262"/db_xref "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref "Illumina_V2:ILMN_8313"/translation "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"gene 47167..79981/gene ENSG00000198908/locus_tag "BHLHB9"/note "Protein BHLHB9 (bHLHB9) (Transcription regulator of 60 kDa) (p60TRP). [Source:Uniprot/SWISSPROT;Acc:Q6PI77]"mRNA join(47167..47262,47398..47532,75140..78879)/gene "ENSG00000198908"/note "transcript_id=ENST00000372738"CDS 75437..77080/gene "ENSG00000198908"/protein_id "ENSP00000361823"/note "transcript_id=ENST00000372738"/db_xref "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref "RefSeq_peptide:NP_085142.1"/db_xref "RefSeq_dna:NM_030639"/db_xref "EntrezGene:BHLHB9"/db_xref "AgilentProbe:A_23_P308954"/db_xref "AgilentProbe:A_32_P348800"/db_xref "AgilentProbe:A_32_P796164"/db_xref "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-002"/db_xref "IPI:IPI00513802.1"/db_xref "UniGene:Hs.4276"/db_xref "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref "AFFY_HG_U133_Plus_2:213709_at"/db_xref "AFFY_HuEx_1_0_st_v2:3937803"/db_xref "AFFY_HuEx_1_0_st_v2:4016264"/db_xref "AFFY_HuEx_1_0_st_v2:4016266"/db_xref "AFFY_HuEx_1_0_st_v2:4016274"/db_xref "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref "OTTT:OTTHUMT00000057631"/db_xref "shares_CDS_with_OTTT:BHLHB9-002"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057631"/translation "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"mRNA join(47167..47262,47398..47532,75140..78879)/gene "ENSG00000198908"/note "transcript_id=ENST00000361229"CDS 75368..77080/gene "ENSG00000198908"/protein_id "ENSP00000354675"/note "transcript_id=ENST00000361229"/db_xref "HGNC:BHLHB9"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref "AgilentProbe:A_23_P308954"/db_xref "AgilentProbe:A_32_P348800"/db_xref "AgilentProbe:A_32_P796164"/db_xref "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_automatic_transcript:BHLHB9-201"/db_xref "IPI:IPI00513802.1"/db_xref "IPI:IPI00844393.1"/db_xref "UniGene:Hs.4276"/db_xref "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref "AFFY_HG_U133_Plus_2:213709_at"/db_xref "AFFY_HuEx_1_0_st_v2:3937803"/db_xref "AFFY_HuEx_1_0_st_v2:4016264"/db_xref "AFFY_HuEx_1_0_st_v2:4016266"/db_xref "AFFY_HuEx_1_0_st_v2:4016274"/db_xref "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/translation "DFDLGHIENQGQDWTGPYNWASTMAGTKNKTRAQAKTEKKAAIQ AKAGAEREATGVVRPVAKTRAKAKAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPK TLGKAMGDFTPKAGNESTSSTCKNEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKN DKPEIGAQVCAEELEPAAGADCKPRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSR IVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAE ENACSLPVATACRPSRNTRSCSQPIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFA CPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTL IESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLK ILGQLTTDFVHHYIVANYFSELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMK ALAALKLIFNQKEAKANLVSGVAIFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEI IETM"mRNA join(72535..72615,74026..74137,74258..74352,75140..79981)/gene "ENSG00000198908"/note "transcript_id=ENST00000372735"CDS 75437..77080/gene "ENSG00000198908"/protein_id "ENSP00000361820"/note "transcript_id=ENST00000372735"/db_xref "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref "AgilentCGH:A_14_P200664"/db_xref "AgilentProbe:A_23_P308954"/db_xref "AgilentProbe:A_32_P348800"/db_xref "AgilentProbe:A_32_P796164"/db_xref "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-001"/db_xref "IPI:IPI00513802.1"/db_xref "UniGene:Hs.603894"/db_xref "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref "AFFY_HG_U133_Plus_2:213709_at"/db_xref "AFFY_HuEx_1_0_st_v2:3937803"/db_xref "AFFY_HuEx_1_0_st_v2:4016224"/db_xref "AFFY_HuEx_1_0_st_v2:4016270"/db_xref "AFFY_HuEx_1_0_st_v2:4016274"/db_xref "AFFY_HuEx_1_0_st_v2:4016276"/db_xref "AFFY_HuEx_1_0_st_v2:4016277"/db_xref "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref "Codelink:GE54272"/db_xref "Codelink:GE822399"/db_xref "Illumina_V1:GI_14769619-S"/db_xref "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref "OTTP:59431"/db_xref "OTTP:OTTHUMP00000023715"/db_xref "OTTT:OTTHUMT00000057630"/translation "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"gene 99642..99712/gene ENSG00000209002/locus_tag "AL035427.17"misc_RNA 99642..99712/gene "ENSG00000209002"/db_xref "Clone_based_ensembl_transcri:AL035427.17-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386267"gene 112108..113045/gene ENSG00000216245/locus_tag "RP11-522L3.1"misc_RNA 112108..113045/gene "ENSG00000216245"/db_xref "Clone_based_vega_transcript:RP11-522L3.1-001"/db_xref "OTTT:OTTHUMT00000057652"/note "processed_pseudogene"/note "transcript_id=ENST00000404960"gene 113050..113109/gene ENSG00000208995/locus_tag "AL590407.8"misc_RNA 113050..113109/gene "ENSG00000208995"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386260"gene 113185..113253/gene ENSG00000208993/locus_tag "AL590407.8"misc_RNA 113185..113253/gene "ENSG00000208993"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386258"gene 113254..114828/gene ENSG00000218436/locus_tag "RP11-522L3.2"misc_RNA join(113254..113638,114269..114828)/gene "ENSG00000218436"/db_xref "Clone_based_vega_transcript:RP11-522L3.2-001"/db_xref "OTTT:OTTHUMT00000057653"/note "processed_pseudogene"/note "transcript_id=ENST00000403360"gene 122692..123510/gene ENSG00000220260/locus_tag "RP11-522L3.3"misc_RNA join(122692..122931,123275..123510)/gene "ENSG00000220260"/db_xref "Clone_based_vega_transcript:RP11-522L3.3-001"/db_xref "AFFY_HuEx_1_0_st_v2:4016279"/db_xref "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057654"/note "processed_pseudogene"/note "transcript_id=ENST00000407716"gene complement(123532..123603)/gene ENSG00000208991/locus_tag "AL590407.8"misc_RNA complement(123532..123603)/gene "ENSG00000208991"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386256"gene 123970..124556/gene ENSG00000219427/locus_tag "RP11-522L3.4"misc_RNA 123970..124556/gene "ENSG00000219427"/db_xref "Clone_based_vega_transcript:RP11-522L3.4-001"/db_xref "AFFY_HuEx_1_0_st_v2:4016279"/db_xref "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057655"/note "processed_pseudogene"/note "transcript_id=ENST00000406243"gene 124837..126001/gene ENSG00000218342/locus_tag "RP11-522L3.5"misc_RNA join(124837..125403,125910..126001)/gene "ENSG00000218342"/db_xref "Clone_based_vega_transcript:RP11-522L3.5-001"/db_xref "OTTT:OTTHUMT00000057656"/note "processed_pseudogene"/note "transcript_id=ENST00000407350"gene 126004..126327/gene ENSG00000220461/locus_tag "RP11-522L3.6"misc_RNA 126004..126327/gene "ENSG00000220461"/db_xref "Clone_based_vega_transcript:RP11-522L3.6-001"/db_xref "OTTT:OTTHUMT00000057657"/note "processed_pseudogene"/note "transcript_id=ENST00000403529"gene 126383..127840/gene ENSG00000220086/locus_tag "RP11-522L3.7"misc_RNA join(126383..127532,127754..127840)/gene "ENSG00000220086"/db_xref "Clone_based_vega_transcript:RP11-522L3.7-001"/db_xref "OTTT:OTTHUMT00000057648"/note "processed_pseudogene"/note "transcript_id=ENST00000405058"gene 127842..127907/gene ENSG00000208988/locus_tag "AL590407.8"misc_RNA 127842..127907/gene "ENSG00000208988"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386253"gene 129354..129411/gene ENSG00000208986/locus_tag "AL590407.8"misc_RNA 129354..129411/gene "ENSG00000208986"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386251"gene 129412..129481/gene ENSG00000208977/locus_tag "AL590407.8"misc_RNA 129412..129481/gene "ENSG00000208977"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386242"gene 129482..132579/gene ENSG00000216547/locus_tag "RP11-522L3.8"misc_RNA join(129482..129726,131073..132579)/gene "ENSG00000216547"/db_xref "Clone_based_vega_transcript:RP11-522L3.8-001"/db_xref "AFFY_HuEx_1_0_st_v2:2778904"/db_xref "OTTT:OTTHUMT00000057649"/note "processed_pseudogene"/note "transcript_id=ENST00000402841"gene complement(132605..133087)/gene ENSG00000217506/locus_tag "RP11-522L3.9"misc_RNA complement(132605..133087)/gene "ENSG00000217506"/db_xref "Clone_based_vega_transcript:RP11-522L3.9-001"/db_xref "OTTT:OTTHUMT00000057650"/note "processed_pseudogene"/note "transcript_id=ENST00000403019"gene 133182..134268/gene ENSG00000218097/locus_tag "RP11-522L3.11"misc_RNA 133182..134268/gene "ENSG00000218097"/db_xref "Clone_based_vega_transcript:RP11-522L3.11-001"/db_xref "AFFY_HuEx_1_0_st_v2:4016280"/db_xref "AFFY_HuGene_1_0_st_v1:8174199"/db_xref "OTTT:OTTHUMT00000057651"/note "processed_pseudogene"/note "transcript_id=ENST00000401627"gene complement(134334..134386)/gene ENSG00000208972/locus_tag "AL590407.8"misc_RNA complement(134334..134386)/gene "ENSG00000208972"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386237"gene 135559..135629/gene ENSG00000208969/locus_tag "AL590407.8"misc_RNA 135559..135629/gene "ENSG00000208969"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386234"gene 136559..136627/gene ENSG00000208964/locus_tag "AL590407.8"misc_RNA 136559..136627/gene "ENSG00000208964"/db_xref "Clone_based_ensembl_transcri:AL590407.8-201"/note "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386229"gene 263713..264741/gene ENSG00000102128/locus_tag "RAB40AL"/note "Ras-related protein Rab-40A-like (Ras-like GTPase). [Source:Uniprot/SWISSPROT;Acc:P0C0E4]"mRNA 263713..264741/gene "ENSG00000102128"/note "transcript_id=ENST00000218249"CDS 263760..264596/gene "ENSG00000102128"/protein_id "ENSP00000218249"/note "transcript_id=ENST00000218249"/db_xref "HGNC:RAB40AL"/db_xref "CCDS:CCDS35353.1"/db_xref "Uniprot/SWISSPROT:RB40L_HUMAN"/db_xref "RefSeq_peptide:NP_001027004.1"/db_xref "RefSeq_dna:NM_001031834"/db_xref "EntrezGene:RAB40AL"/db_xref "AgilentProbe:A_32_P88717"/db_xref "AgilentProbe:A_32_P88719"/db_xref "EMBL:BC101169"/db_xref "EMBL:BC101170"/db_xref "EMBL:BC101171"/db_xref "EMBL:BC101172"/db_xref "EMBL:Z95624"/db_xref "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref "GO:GO:0005739"/db_xref "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40AL-001"/db_xref "IPI:IPI00555763.1"/db_xref "MIM_GENE:300405"/db_xref "UniGene:Hs.449517"/db_xref "protein_id:AAI01170.1"/db_xref "protein_id:AAI01171.1"/db_xref "protein_id:AAI01172.1"/db_xref "protein_id:AAI01173.1"/db_xref "protein_id:CAB09136.1"/db_xref "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref "AFFY_HG_U133_Plus_2:215782_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985604"/db_xref "AFFY_HuEx_1_0_st_v2:3985605"/db_xref "AFFY_HuEx_1_0_st_v2:4016299"/db_xref "AFFY_HuGeneFL:Z95624_at"/db_xref "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref "Illumina_V2:ILMN_24932"/db_xref "OTTT:OTTHUMT00000057679"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057679"/db_xref "shares_CDS_with_OTTT:RAB40AL-001"/translation "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYS HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN FNIIESFTELARIVLLRHRLNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIAL RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCK IS"gene 333902..334513/gene ENSG00000219659/locus_tag "LL0XNC01-73E8.1"misc_RNA 333902..334513/gene "ENSG00000219659"/db_xref "Clone_based_vega_transcript:LL0XNC01-73E8.1-001"/db_xref "OTTT:OTTHUMT00000057683"/note "processed_pseudogene"/note "transcript_id=ENST00000406951"gene complement(389101..390681)/gene ENSG00000133169/locus_tag "BEX1"/note "Protein BEX1 (Brain-expressed X-linked protein 1). [Source:Uniprot/SWISSPROT;Acc:Q9HBH7]"mRNA join(complement(390537..390681), complement(390083..390172),complement(389101..389720))/gene "ENSG00000133169"/note "transcript_id=ENST00000372728"CDS complement(389338..389715)/gene "ENSG00000133169"/protein_id "ENSP00000361813"/note "transcript_id=ENST00000372728"/db_xref "HGNC:BEX1"/db_xref "CCDS:CCDS35354.1"/db_xref "Uniprot/SWISSPROT:BEX1_HUMAN"/db_xref "RefSeq_peptide:NP_060946.3"/db_xref "RefSeq_dna:NM_018476"/db_xref "EntrezGene:BEX1"/db_xref "AgilentProbe:A_23_P159952"/db_xref "AgilentProbe:A_32_P168503"/db_xref "EMBL:AF183416"/db_xref "EMBL:AF220189"/db_xref "EMBL:AF237783"/db_xref "EMBL:AK290958"/db_xref "EMBL:AL008708"/db_xref "EMBL:AY833561"/db_xref "EMBL:BC126427"/db_xref "EMBL:BC126429"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "GO:GO:0007275"/db_xref "GO:GO:0007399"/db_xref "GO:GO:0030154"/db_xref "HGNC_curated_transcript:BEX1-001"/db_xref "IPI:IPI00020533.4"/db_xref "MIM_GENE:300690"/db_xref "protein_id:AAF67654.1"/db_xref "protein_id:AAG09685.1"/db_xref "protein_id:AAG09752.1"/db_xref "protein_id:AAI26428.1"/db_xref "protein_id:AAI26430.1"/db_xref "protein_id:AAX40679.1"/db_xref "protein_id:BAF83647.1"/db_xref "protein_id:CAI42418.1"/db_xref "AFFY_HG_U133A:218332_at"/db_xref "AFFY_HG_U133A_2:218332_at"/db_xref "AFFY_HG_U133_Plus_2:218332_at"/db_xref "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref "AFFY_HuEx_1_0_st_v2:3985407"/db_xref "AFFY_HuEx_1_0_st_v2:3985408"/db_xref "AFFY_U133_X3P:g8923715_3p_at"/db_xref "Codelink:GE82387"/db_xref "Illumina_V1:GI_15147227-S"/db_xref "Illumina_V2:ILMN_23116"/db_xref "OTTT:OTTHUMT00000058925"/db_xref "shares_CDS_with_OTTT:BEX1-001"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058925"/translation "MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYC VPRGNRRRFRVRQPILQYRWDMMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLS HSLRAVSTDPPHHDHHDEFCLMP"gene complement(395306..395427)/gene ENSG00000221010/locus_tag "AL008708.4"misc_RNA complement(395306..395427)/gene "ENSG00000221010"/db_xref "Clone_based_ensembl_transcri:AL008708.4-201"/note "miRNA"/note "transcript_id=ENST00000408083"gene complement(402265..419540)/gene ENSG00000147206/locus_tag "NXF3"/note "Nuclear RNA export factor 3 (TAP-like protein 3) (TAPL-3). [Source:Uniprot/SWISSPROT;Acc:Q9H4D5]"mRNA join(complement(419437..419535), complement(411156..411324),complement(410783..410936), complement(410050..410133),complement(409839..409943), complement(409634..409714),complement(409445..409514), complement(409201..409289),complement(408696..408805), complement(407017..407053),complement(406589..406657), complement(406454..406509),complement(406204..406311), complement(406025..406083),complement(405800..405915), complement(405662..405704),complement(405001..405073), complement(404055..404187),complement(402682..402742), complement(402265..402441))/gene "ENSG00000147206"/note "transcript_id=ENST00000395065"CDS join(complement(419437..419464), complement(411156..411324),complement(410783..410936), complement(410050..410133),complement(409839..409943), complement(409634..409714),complement(409445..409514), complement(409201..409289),complement(408696..408805), complement(407017..407053),complement(406589..406657), complement(406454..406509),complement(406204..406311), complement(406025..406083),complement(405800..405915), complement(405662..405704),complement(405001..405073), complement(404055..404187),complement(402731..402742))/gene "ENSG00000147206"/protein_id "ENSP00000378504"/note "transcript_id=ENST00000395065"/db_xref "CCDS:CCDS14503.1"/db_xref "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref "RefSeq_peptide:NP_071335.1"/db_xref "RefSeq_dna:NM_022052"/db_xref "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref "GO:GO:0003729"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "GO:GO:0006810"/db_xref "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref "HGNC_curated_transcript:NXF3-001"/db_xref "IPI:IPI00004930.5"/db_xref "IPI:IPI00552760.2"/db_xref "MIM_GENE:300316"/db_xref "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref "AFFY_HG_U133A:220110_s_at"/db_xref "AFFY_HG_U133A_2:220110_s_at"/db_xref "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref "AFFY_HG_U95E:89668_at"/db_xref "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref "Illumina_V1:GI_11545756-S"/db_xref "Illumina_V2:ILMN_19573"/db_xref "OTTT:OTTHUMT00000057684"/db_xref "shares_CDS_with_OTTT:NXF3-001"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057684"/translation "MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSS SHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRME GNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENA SIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQ EALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPG EKCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGS FFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCK FFKDSRNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLC FSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFT LVPTAFSSSVPAFSQEQQKMLPS"mRNA join(complement(419437..419540), complement(411156..411324),complement(410783..410936), complement(410050..410133),complement(409839..409943), complement(409634..409714),complement(409445..409514), complement(409201..409289),complement(408696..408805), complement(407017..407053),complement(406589..406657), complement(406454..406509),complement(406204..406311), complement(406025..406083),complement(405800..405915), complement(405662..405704),complement(405001..405073), complement(404055..404187),complement(402682..402742), complement(402265..402441))/gene "ENSG00000147206"/note "transcript_id=ENST00000372709"CDS join(complement(419437..419539), complement(411156..411324),complement(410783..410936), complement(410050..410133),complement(409839..409943), complement(409634..409714),complement(409445..409514), complement(409201..409289),complement(408696..408805), complement(407017..407053),complement(406589..406657), complement(406454..406509),complement(406204..406311), complement(406025..406083),complement(405800..405915), complement(405662..405704),complement(405001..405073), complement(404055..404187),complement(402731..402742))/gene "ENSG00000147206"/protein_id "ENSP00000361794"/note "transcript_id=ENST00000372709"/db_xref "HGNC:NXF3"/db_xref "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref "RefSeq_peptide:NP_071335.1"/db_xref "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref "GO:GO:0003729"/db_xref "GO:GO:0003729"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "GO:GO:0005737"/db_xref "GO:GO:0006810"/db_xref "GO:GO:0016973"/db_xref "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref "HGNC_automatic_transcript:NXF3-201"/db_xref "IPI:IPI00004930.5"/db_xref "IPI:IPI00552760.2"/db_xref "IPI:IPI00872823.1"/db_xref "MIM_GENE:300316"/db_xref "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref "AFFY_HG_U133A:220110_s_at"/db_xref "AFFY_HG_U133A_2:220110_s_at"/db_xref "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref "AFFY_HG_U95E:89668_at"/db_xref "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref "Illumina_V1:GI_11545756-S"/db_xref "Illumina_V2:ILMN_19573"/translation "LNLLQTPVPRPHRFSSREPYKDIGKMSLPSGHTTGHTDQVVQRR ARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRK GSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQN ECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASL DVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSILELFPKLLCL DGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSA YHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDIVDSLS ALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSS SLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS"gene 413637..415717/gene ENSG00000217368/locus_tag "LL0XNC01-221F2.2"misc_RNA 413637..415717/gene "ENSG00000217368"/db_xref "RefSeq_dna_predicted:XR_037041"/db_xref "RefSeq_dna_predicted:XR_037455"/db_xref "RefSeq_dna_predicted:XR_039021"/db_xref "Clone_based_vega_transcript:LL0XNC01-221F2.2- 001"/db_xref "AFFY_HuEx_1_0_st_v2:3588353"/db_xref "AFFY_HuEx_1_0_st_v2:4016361"/db_xref "AFFY_HuEx_1_0_st_v2:4016362"/db_xref "AFFY_HuEx_1_0_st_v2:4016363"/db_xref "AFFY_U133_X3P:Hs.195728.0.A1_3p_at"/db_xref "OTTT:OTTHUMT00000057692"/note "processed_pseudogene"/note "transcript_id=ENST00000403064"gene complement(482560..482652)/gene ENSG00000200662/locus_tag "AL035494.8"misc_RNA complement(482560..482652)/gene "ENSG00000200662"/db_xref "Clone_based_ensembl_transcri:AL035494.8-201"/db_xref "RFAM:RF00019"/note "misc_RNA"/note "transcript_id=ENST00000363792"gene complement(532453..533340)/gene ENSG00000220705/locus_tag "RP4-635G19.1"misc_RNA complement(532453..533340)/gene "ENSG00000220705"/db_xref "Clone_based_vega_transcript:RP4-635G19.1-001"/db_xref "AFFY_HuEx_1_0_st_v2:2670016"/db_xref "AFFY_HuEx_1_0_st_v2:3985483"/db_xref "AFFY_HuEx_1_0_st_v2:3985484"/db_xref "AFFY_HuEx_1_0_st_v2:3985485"/db_xref "OTTT:OTTHUMT00000057693"/note "processed_pseudogene"/note "transcript_id=ENST00000402296"gene 541565..543636/gene ENSG00000102409/locus_tag "BEX4"/note "Protein BEX4 (Brain-expressed X-linked protein 4) (BEX1-like 1) (Nerve growth factor receptor-associated protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NWD9]"mRNA join(541565..541679,542590..543540)/gene "ENSG00000102409"/note "transcript_id=ENST00000372691"CDS 542595..542957/gene "ENSG00000102409"/protein_id "ENSP00000361776"/note "transcript_id=ENST00000372691"/db_xref "HGNC:BEX4"/db_xref "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref "RefSeq_peptide:NP_001073894.1"/db_xref "EntrezGene:BEX4"/db_xref "AgilentProbe:A_24_P40551"/db_xref "AgilentProbe:A_32_P156941"/db_xref "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX4-002"/db_xref "IPI:IPI00739732.1"/db_xref "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref "AFFY_HG_U133A:215440_s_at"/db_xref "AFFY_HG_U133A_2:215440_s_at"/db_xref "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016383"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref "Illumina_V2:ILMN_37437"/db_xref "OTTP:59442"/db_xref "OTTP:OTTHUMP00000023729"/db_xref "OTTT:OTTHUMT00000057695"/translation "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY MRFQTPEPDNHYDFCLIP"mRNA join(541565..541679,542123..542205,542590..543636)/gene "ENSG00000102409"/note "transcript_id=ENST00000372695"CDS 542595..542957/gene "ENSG00000102409"/protein_id "ENSP00000361780"/note "transcript_id=ENST00000372695"/db_xref "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref "RefSeq_peptide:NP_001073894.1"/db_xref "RefSeq_dna:NM_001080425"/db_xref "RefSeq_dna_predicted:XM_043653"/db_xref "EntrezGene:BEX4"/db_xref "AgilentProbe:A_23_P114391"/db_xref "AgilentProbe:A_24_P40551"/db_xref "AgilentProbe:A_32_P156941"/db_xref "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX4-001"/db_xref "IPI:IPI00739732.1"/db_xref "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref "AFFY_HG_U133A:215440_s_at"/db_xref "AFFY_HG_U133A_2:215440_s_at"/db_xref "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016383"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref "Illumina_V2:ILMN_37437"/db_xref "OTTT:OTTHUMT00000057694"/db_xref "shares_CDS_with_OTTT:BEX4-001"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057694"/translation "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY MRFQTPEPDNHYDFCLIP"gene complement(579439..581634)/gene ENSG00000180964/locus_tag "TCEAL8"/note "Transcription elongation factor A protein-like 8 (TCEA-like protein 8) (Transcription elongation factor S- II protein-like 8). [Source:Uniprot/SWISSPROT;Acc:Q8IYN2]"mRNA join(complement(581519..581634), complement(579439..580458))/gene "ENSG00000180964"/note "transcript_id=ENST00000360000"CDS complement(580067..580420)/gene "ENSG00000180964"/protein_id "ENSP00000353093"/note "transcript_id=ENST00000360000"/db_xref "HGNC:TCEAL8"/db_xref "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref "RefSeq_peptide:NP_001006685.1"/db_xref "RefSeq_peptide:NP_699164.1"/db_xref "EntrezGene:TCEAL8"/db_xref "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL8-002"/db_xref "IPI:IPI00217810.1"/db_xref "UniGene:Hs.612731"/db_xref "protein_id:AAH35573.1"/db_xref "protein_id:CAI41979.1"/db_xref "AFFY_HG_U133B:224819_at"/db_xref "AFFY_HG_U133_Plus_2:224819_at"/db_xref "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref "AFFY_HuEx_1_0_st_v2:3985503"/db_xref "AFFY_HuEx_1_0_st_v2:3985505"/db_xref "AFFY_U133_X3P:224819_3p_at"/db_xref "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057699"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057699"/db_xref "shares_CDS_with_OTTT:TCEAL8-002"/translation "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK QRHSRSRPYPVCFRP"mRNA join(complement(581519..581634), complement(581046..581118),complement(579439..580458))/gene "ENSG00000180964"/note "transcript_id=ENST00000372685"CDS complement(580067..580420)/gene "ENSG00000180964"/protein_id "ENSP00000361770"/note "transcript_id=ENST00000372685"/db_xref "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref "RefSeq_peptide:NP_001006685.1"/db_xref "RefSeq_peptide:NP_699164.1"/db_xref "RefSeq_dna:NM_001006684"/db_xref "RefSeq_dna:NM_153333"/db_xref "EntrezGene:TCEAL8"/db_xref "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL8-001"/db_xref "IPI:IPI00217810.1"/db_xref "protein_id:AAH35573.1"/db_xref "protein_id:CAI41979.1"/db_xref "AFFY_HG_U133B:224819_at"/db_xref "AFFY_HG_U133_Plus_2:224819_at"/db_xref "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref "AFFY_HuEx_1_0_st_v2:3985503"/db_xref "AFFY_HuEx_1_0_st_v2:3985504"/db_xref "AFFY_HuEx_1_0_st_v2:3985505"/db_xref "AFFY_U133_X3P:224819_3p_at"/db_xref "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057698"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057698"/db_xref "shares_CDS_with_OTTT:TCEAL8-001"/translation "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK QRHSRSRPYPVCFRP"mRNA join(complement(580331..580420), complement(580100..580231))/gene "ENSG00000180964"/note "transcript_id=ENST00000372681"CDS join(complement(580331..580420), complement(580100..580231))/gene "ENSG00000180964"/protein_id "ENSP00000361766"/note "transcript_id=ENST00000372681"/db_xref "Uniprot/SPTREMBL:Q5H9L1_HUMAN"/db_xref "EMBL:Z68694"/db_xref "GO:GO:0003746"/db_xref "HGNC_automatic_transcript:TCEAL8-201"/db_xref "IPI:IPI00640443.1"/db_xref "protein_id:CAI41978.1"/db_xref "AFFY_HuEx_1_0_st_v2:3985503"/db_xref "AFFY_HuEx_1_0_st_v2:3985504"/translation "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEDTPVRHLDPEEMIR GVDELERLREEIRRVRNKFVMMHWKQRHSR"gene complement(585013..586022)/gene ENSG00000219002/locus_tag "LL0XNC01-177E8.2"misc_RNA join(complement(585929..586022), complement(585013..585759))/gene "ENSG00000219002"/db_xref "Clone_based_vega_transcript:LL0XNC01-177E8.2- 001"/db_xref "OTTT:OTTHUMT00000057697"/note "processed_pseudogene"/note "transcript_id=ENST00000406148"gene complement(600132..603313)/gene ENSG00000204065/locus_tag "TCEAL5"/note "Transcription elongation factor A protein-like 5 (TCEA-like protein 5) (Transcription elongation factor S- II protein-like 5). [Source:Uniprot/SWISSPROT;Acc:Q5H9L2]"mRNA join(complement(603114..603313), complement(601716..601783),complement(600132..601031))/gene "ENSG00000204065"/note "transcript_id=ENST00000372680"CDS complement(600384..601004)/gene "ENSG00000204065"/protein_id "ENSP00000361765"/note "transcript_id=ENST00000372680"/db_xref "HGNC:TCEAL5"/db_xref "CCDS:CCDS35356.1"/db_xref "Uniprot/SWISSPROT:TCAL5_HUMAN"/db_xref "RefSeq_peptide:NP_001012997.1"/db_xref "RefSeq_dna:NM_001012979"/db_xref "Uniprot/SPTREMBL:A2RUJ4_HUMAN"/db_xref "EntrezGene:TCEAL5"/db_xref "AgilentProbe:A_23_P62399"/db_xref "AgilentProbe:A_32_P18470"/db_xref "EMBL:BC132922"/db_xref "EMBL:BC132924"/db_xref "EMBL:CH471190"/db_xref "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL5-001"/db_xref "IPI:IPI00257932.1"/db_xref "UniGene:Hs.403462"/db_xref "protein_id:AAI32923.1"/db_xref "protein_id:AAI32925.1"/db_xref "protein_id:CAI41976.1"/db_xref "protein_id:EAW54717.1"/db_xref "AFFY_HG_U95E:87383_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "Codelink:GE876309"/db_xref "Illumina_V1:GI_29744085-S"/db_xref "Illumina_V2:ILMN_10460"/db_xref "OTTP:59448"/db_xref "OTTP:OTTHUMP00000023730"/db_xref "OTTT:OTTHUMT00000057696"/db_xref "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057696"/db_xref "shares_CDS_and_UTR_with_OTTT:TCEAL5-001"/translation "MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDM EGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRA AEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELR KKQKMGGFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV"gene complement(635795..637458)/gene ENSG00000133134/locus_tag "BEX2"/note "Protein BEX2 (Brain-expressed X-linked protein 2) (hBex2). [Source:Uniprot/SWISSPROT;Acc:Q9BXY8]"mRNA join(complement(637301..637458), complement(636799..636874),complement(635795..636422))/gene "ENSG00000133134"/note "transcript_id=ENST00000372677"CDS complement(636031..636417)/gene "ENSG00000133134"/protein_id "ENSP00000361762"/note "transcript_id=ENST00000372677"/db_xref "HGNC:BEX2"/db_xref "CCDS:CCDS14505.1"/db_xref "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref "RefSeq_peptide:NP_116010.1"/db_xref "RefSeq_dna:NM_032621"/db_xref "EntrezGene:BEX2"/db_xref "AgilentProbe:A_23_P22735"/db_xref "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-002"/db_xref "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref "AFFY_HG_U133_Plus_2:224367_at"/db_xref "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref "AFFY_HuEx_1_0_st_v2:3985510"/db_xref "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref "Illumina_V1:hmm18828-S"/db_xref "Illumina_V1:hmm36653-S"/db_xref "OTTT:OTTHUMT00000057702"/db_xref "shares_CDS_with_OTTT:BEX2-002"/db_xref "shares_CDS_with_OTTT:BEX2-003"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057702"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057703"/translation "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK QLSHSLRAVSTDPPHHDHHDEFCLMP"mRNA join(complement(637337..637448), complement(636799..636874),complement(635943..636422))/gene "ENSG00000133134"/note "transcript_id=ENST00000372674"CDS complement(636031..636417)/gene "ENSG00000133134"/protein_id "ENSP00000361759"/note "transcript_id=ENST00000372674"/db_xref "CCDS:CCDS14505.1"/db_xref "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref "RefSeq_peptide:NP_116010.1"/db_xref "EntrezGene:BEX2"/db_xref "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-003"/db_xref "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref "AFFY_HG_U133_Plus_2:224367_at"/db_xref "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref "AFFY_HuEx_1_0_st_v2:3985510"/db_xref "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref "Illumina_V1:hmm18828-S"/db_xref "OTTP:59451"/db_xref "OTTP:OTTHUMP00000023736"/db_xref "OTTT:OTTHUMT00000057703"/db_xref "shares_CDS_with_ENST:ENST00000372677"/translation "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK QLSHSLRAVSTDPPHHDHHDEFCLMP"gene 656670..658766/gene ENSG00000182916/locus_tag "TCEAL7"/note "Transcription elongation factor A protein-like 7 (TCEA-like protein 7) (Transcription elongation factor S- II protein-like 7). [Source:Uniprot/SWISSPROT;Acc:Q9BRU2]"mRNA join(656670..656745,657418..657481,657818..658529)/gene "ENSG00000182916"/note "transcript_id=ENST00000372666"CDS 657845..658147/gene "ENSG00000182916"/protein_id "ENSP00000361751"/note "transcript_id=ENST00000372666"/db_xref "HGNC:TCEAL7"/db_xref "CCDS:CCDS14506.1"/db_xref "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref "RefSeq_peptide:NP_689491.1"/db_xref "RefSeq_dna:NM_152278"/db_xref "EntrezGene:TCEAL7"/db_xref "AgilentCGH:A_14_P111438"/db_xref "AgilentProbe:A_23_P125788"/db_xref "AgilentProbe:A_24_P49106"/db_xref "EMBL:BC005988"/db_xref "EMBL:BC016786"/db_xref "EMBL:Z92846"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL7-002"/db_xref "IPI:IPI00059712.1"/db_xref "protein_id:AAH05988.2"/db_xref "protein_id:AAH16786.1"/db_xref "protein_id:CAI41965.1"/db_xref "AFFY_HG_U133B:227705_at"/db_xref "AFFY_HG_U133_Plus_2:227705_at"/db_xref "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016444"/db_xref "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref "Illumina_V2:ILMN_13373"/db_xref "OTTP:59455"/db_xref "OTTP:OTTHUMP00000023738"/db_xref "OTTT:OTTHUMT00000057705"/db_xref "shares_CDS_with_ENST:ENST00000332431"/translation "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"mRNA join(656678..656745,657364..657481,657818..658766)/gene "ENSG00000182916"/note "transcript_id=ENST00000332431"CDS 657845..658147/gene "ENSG00000182916"/protein_id "ENSP00000329794"/note "transcript_id=ENST00000332431"/db_xref "CCDS:CCDS14506.1"/db_xref "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref "RefSeq_peptide:NP_689491.1"/db_xref "EntrezGene:TCEAL7"/db_xref "AgilentCGH:A_14_P111438"/db_xref "AgilentProbe:A_23_P125788"/db_xref "AgilentProbe:A_24_P49106"/db_xref "EMBL:BC005988"/db_xref "EMBL:BC016786"/db_xref "EMBL:Z92846"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL7-001"/db_xref "IPI:IPI00059712.1"/db_xref "UniGene:Hs.602651"/db_xref "protein_id:AAH05988.2"/db_xref "protein_id:AAH16786.1"/db_xref "protein_id:CAI41965.1"/db_xref "AFFY_HG_U133B:227705_at"/db_xref "AFFY_HG_U133_Plus_2:227705_at"/db_xref "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016446"/db_xref "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref "Illumina_V2:ILMN_13373"/db_xref "OTTT:OTTHUMT00000057704"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057704"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057705"/db_xref "shares_CDS_with_OTTT:TCEAL7-001"/db_xref "shares_CDS_with_OTTT:TCEAL7-002"/translation "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"gene complement(673903..674170)/gene ENSG00000215026/locus_tag "LL0XNC01-105G4.3"misc_RNA complement(673903..674170)/gene "ENSG00000215026"/db_xref "Clone_based_vega_transcript:LL0XNC01-105G4.3- 001"/db_xref "OTTT:OTTHUMT00000057708"/note "processed_pseudogene"/note "transcript_id=ENST00000399456"gene 682893..684892/gene ENSG00000185222/locus_tag "WBP5"/note "WW domain-binding protein 5 (WBP-5). [Source:Uniprot/SWISSPROT;Acc:Q9UHQ7]"mRNA join(682893..683047,684056..684892)/gene "ENSG00000185222"/note "transcript_id=ENST00000372656"CDS 684126..684440/gene "ENSG00000185222"/protein_id "ENSP00000361740"/note "transcript_id=ENST00000372656"/db_xref "HGNC:WBP5"/db_xref "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref "RefSeq_peptide:NP_001006613.1"/db_xref "RefSeq_peptide:NP_001006614.1"/db_xref "RefSeq_peptide:NP_001006615.1"/db_xref "RefSeq_peptide:NP_057387.1"/db_xref "EntrezGene:WBP5"/db_xref "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref "HGNC_curated_transcript:WBP5-002"/db_xref "IPI:IPI00008434.1"/db_xref "protein_id:AAF17229.1"/db_xref "protein_id:AAH23544.1"/db_xref "protein_id:CAD12327.1"/db_xref "AFFY_HG_Focus:217975_at"/db_xref "AFFY_HG_U133A:217975_at"/db_xref "AFFY_HG_U133A_2:217975_at"/db_xref "AFFY_HG_U133_Plus_2:217975_at"/db_xref "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016456"/db_xref "AFFY_HuEx_1_0_st_v2:4016458"/db_xref "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref "OTTT:OTTHUMT00000057707"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057707"/db_xref "shares_CDS_with_OTTT:WBP5-002"/translation "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY LM"mRNA join(682893..683047,683524..683602,684056..684892)/gene "ENSG00000185222"/note "transcript_id=ENST00000372661"CDS 684126..684440/gene "ENSG00000185222"/protein_id "ENSP00000361745"/note "transcript_id=ENST00000372661"/db_xref "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref "RefSeq_peptide:NP_001006613.1"/db_xref "RefSeq_peptide:NP_001006614.1"/db_xref "RefSeq_peptide:NP_001006615.1"/db_xref "RefSeq_peptide:NP_057387.1"/db_xref "RefSeq_dna:NM_001006612"/db_xref "RefSeq_dna:NM_001006613"/db_xref "RefSeq_dna:NM_001006614"/db_xref "RefSeq_dna:NM_016303"/db_xref "EntrezGene:WBP5"/db_xref "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref "GO:GO:0050699"/db_xref "HGNC_curated_transcript:WBP5-001"/db_xref "IPI:IPI00008434.1"/db_xref "protein_id:AAF17229.1"/db_xref "protein_id:AAH23544.1"/db_xref "protein_id:CAD12327.1"/db_xref "AFFY_HG_Focus:217975_at"/db_xref "AFFY_HG_U133A:217975_at"/db_xref "AFFY_HG_U133A_2:217975_at"/db_xref "AFFY_HG_U133_Plus_2:217975_at"/db_xref "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016456"/db_xref "AFFY_HuEx_1_0_st_v2:4016458"/db_xref "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref "OTTT:OTTHUMT00000057706"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057706"/db_xref "shares_CDS_with_OTTT:WBP5-001"/translation "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY LM"gene 702767..704518/gene ENSG00000166681/locus_tag "NGFRAP1"/note "Protein BEX3 (Brain-expressed X-linked protein 3) (p75NTR-associated cell death executor) (Nerve growth factor receptor-associated protein 1) (Ovarian granulosa cell 13.0 kDa protein HGR74). [Source:Uniprot/SWISSPROT;Acc:Q00994]"mRNA join(702767..703054,703469..703547,703904..704509)/gene "ENSG00000166681"/note "transcript_id=ENST00000299872"CDS 703963..704268/gene "ENSG00000166681"/protein_id "ENSP00000299872"/note "transcript_id=ENST00000299872"/db_xref "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref "HGNC_automatic_transcript:NGFRAP1-201"/db_xref "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref "AFFY_HG_U133A:217963_s_at"/db_xref "AFFY_HG_U133A_2:217963_s_at"/db_xref "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_HuEx_1_0_st_v2:4016461"/db_xref "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref "shares_CDS_with_OTTT:NGFRAP1-002"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057710"/translation "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA join(702767..703054,703469..703547,703904..704509)/gene "ENSG00000166681"/note "transcript_id=ENST00000372645"CDS 703933..704268/gene "ENSG00000166681"/protein_id "ENSP00000361728"/note "transcript_id=ENST00000372645"/db_xref "HGNC:NGFRAP1"/db_xref "CCDS:CCDS14508.1"/db_xref "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref "RefSeq_peptide:NP_055195.1"/db_xref "RefSeq_peptide:NP_996798.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref "RefSeq_dna:NM_014380"/db_xref "RefSeq_dna:NM_206915"/db_xref "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref "GO:GO:0005123"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "GO:GO:0005829"/db_xref "GO:GO:0006915"/db_xref "GO:GO:0006917"/db_xref "GO:GO:0007275"/db_xref "GO:GO:0008625"/db_xref "GO:GO:0046872"/db_xref "HGNC_curated_transcript:NGFRAP1-001"/db_xref "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref "AFFY_HG_U133A:217963_s_at"/db_xref "AFFY_HG_U133A_2:217963_s_at"/db_xref "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_HuEx_1_0_st_v2:4016461"/db_xref "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref "OTTT:OTTHUMT00000057709"/db_xref "shares_CDS_with_OTTT:NGFRAP1-001"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057709"/translation "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD HHDEFCLMP"mRNA join(702781..703054,703469..703547,703951..704518)/gene "ENSG00000166681"/note "transcript_id=ENST00000361298"CDS 703963..704268/gene "ENSG00000166681"/protein_id "ENSP00000354843"/note "transcript_id=ENST00000361298"/db_xref "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref "HGNC_curated_transcript:NGFRAP1-002"/db_xref "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref "AFFY_HG_U133A:217963_s_at"/db_xref "AFFY_HG_U133A_2:217963_s_at"/db_xref "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_HuEx_1_0_st_v2:4016461"/db_xref "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref "OTTP:59460"/db_xref "OTTP:OTTHUMP00000023742"/db_xref "OTTT:OTTHUMT00000057710"/db_xref "shares_CDS_with_ENST:ENST00000299872"/translation "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA join(702848..703054,703904..704501)/gene "ENSG00000166681"/note "transcript_id=ENST00000372635"CDS 703933..704268/gene "ENSG00000166681"/protein_id "ENSP00000361718"/note "transcript_id=ENST00000372635"/db_xref "CCDS:CCDS14508.1"/db_xref "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref "RefSeq_peptide:NP_055195.1"/db_xref "RefSeq_peptide:NP_996798.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref "GO:GO:0006915"/db_xref "GO:GO:0007275"/db_xref "GO:GO:0046872"/db_xref "HGNC_curated_transcript:NGFRAP1-003"/db_xref "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref "AFFY_HG_U133A:217963_s_at"/db_xref "AFFY_HG_U133A_2:217963_s_at"/db_xref "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_HuEx_1_0_st_v2:4016461"/db_xref "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref "OTTP:59461"/db_xref "OTTP:OTTHUMP00000023743"/db_xref "OTTT:OTTHUMT00000057711"/translation "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD HHDEFCLMP"mRNA join(703357..703547,703951..704512)/gene "ENSG00000166681"/note "transcript_id=ENST00000372634"CDS 703963..704268/gene "ENSG00000166681"/protein_id "ENSP00000361717"/note "transcript_id=ENST00000372634"/db_xref "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref "RefSeq_dna:NM_206917"/db_xref "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref "HGNC_curated_transcript:NGFRAP1-004"/db_xref "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref "AFFY_HG_U133A:217963_s_at"/db_xref "AFFY_HG_U133A_2:217963_s_at"/db_xref "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref "AFFY_HuEx_1_0_st_v2:4016461"/db_xref "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref "OTTP:59462"/db_xref "OTTP:OTTHUMP00000023744"/db_xref "OTTT:OTTHUMT00000057712"/translation "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"gene complement(826191..845930)/gene ENSG00000172476/locus_tag "RAB40A"/note "Ras-related protein Rab-40A (SOCS box-containing protein RAR2A) (Protein Rar-2). [Source:Uniprot/SWISSPROT;Acc:Q8WXH6]"mRNA complement(826191..829316)/gene "ENSG00000172476"/note "transcript_id=ENST00000372633"CDS complement(826364..827197)/gene "ENSG00000172476"/protein_id "ENSP00000361716"/note "transcript_id=ENST00000372633"/db_xref "HGNC:RAB40A"/db_xref "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref "RefSeq_peptide:NP_543155.2"/db_xref "RefSeq_dna:NM_080879"/db_xref "EntrezGene:RAB40A"/db_xref "AgilentCGH:A_14_P129520"/db_xref "AgilentProbe:A_23_P259912"/db_xref "AgilentProbe:A_32_P464296"/db_xref "AgilentProbe:A_32_P88719"/db_xref "EMBL:AB232637"/db_xref "EMBL:AF132748"/db_xref "EMBL:AF422143"/db_xref "EMBL:BC074854"/db_xref "EMBL:BC074855"/db_xref "EMBL:BC113501"/db_xref "EMBL:BC117232"/db_xref "EMBL:Z69733"/db_xref "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40A-002"/db_xref "IPI:IPI00514509.4"/db_xref "UniGene:Hs.27453"/db_xref "protein_id:AAH74854.1"/db_xref "protein_id:AAH74855.1"/db_xref "protein_id:AAI13502.1"/db_xref "protein_id:AAI17233.1"/db_xref "protein_id:AAL60514.1"/db_xref "protein_id:AAL75949.1"/db_xref "protein_id:BAF02899.1"/db_xref "protein_id:CAI41993.1"/db_xref "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A:217589_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref "AFFY_HG_U133A_2:217589_at"/db_xref "AFFY_HG_U133_Plus_2:215782_at"/db_xref "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985603"/db_xref "AFFY_HuEx_1_0_st_v2:3985604"/db_xref "AFFY_HuEx_1_0_st_v2:3985605"/db_xref "AFFY_HuEx_1_0_st_v2:3985606"/db_xref "AFFY_HuEx_1_0_st_v2:3985608"/db_xref "AFFY_HuEx_1_0_st_v2:4016299"/db_xref "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V1:Hs.496523-S"/db_xref "Illumina_V2:ILMN_123867"/db_xref "Illumina_V2:ILMN_20197"/db_xref "OTTP:59465"/db_xref "OTTP:OTTHUMP00000023746"/db_xref "OTTT:OTTHUMT00000057714"/translation "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI S"mRNA join(complement(845811..845930), complement(843815..843966),complement(826195..827267))/gene "ENSG00000172476"/note "transcript_id=ENST00000304236"CDS complement(826364..827197)/gene "ENSG00000172476"/protein_id "ENSP00000305648"/note "transcript_id=ENST00000304236"/db_xref "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref "RefSeq_peptide:NP_543155.2"/db_xref "EntrezGene:RAB40A"/db_xref "AgilentCGH:A_14_P129520"/db_xref "AgilentProbe:A_23_P259912"/db_xref "AgilentProbe:A_32_P88719"/db_xref "EMBL:AB232637"/db_xref "EMBL:AF132748"/db_xref "EMBL:AF422143"/db_xref "EMBL:BC074854"/db_xref "EMBL:BC074855"/db_xref "EMBL:BC113501"/db_xref "EMBL:BC117232"/db_xref "EMBL:Z69733"/db_xref "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40A-001"/db_xref "IPI:IPI00514509.4"/db_xref "protein_id:AAH74854.1"/db_xref "protein_id:AAH74855.1"/db_xref "protein_id:AAI13502.1"/db_xref "protein_id:AAI17233.1"/db_xref "protein_id:AAL60514.1"/db_xref "protein_id:AAL75949.1"/db_xref "protein_id:BAF02899.1"/db_xref "protein_id:CAI41993.1"/db_xref "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A:217589_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref "AFFY_HG_U133A_2:217589_at"/db_xref "AFFY_HG_U133_Plus_2:215782_at"/db_xref "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985603"/db_xref "AFFY_HuEx_1_0_st_v2:3985604"/db_xref "AFFY_HuEx_1_0_st_v2:3985605"/db_xref "AFFY_HuEx_1_0_st_v2:4016299"/db_xref "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V2:ILMN_20197"/db_xref "OTTP:59464"/db_xref "OTTP:OTTHUMP00000023745"/db_xref "OTTT:OTTHUMT00000057713"/db_xref "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057713"/db_xref "shares_CDS_and_UTR_with_OTTT:RAB40A-001"/translation "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI S"gene 902911..914166/gene ENSG00000133142/locus_tag "TCEAL4"/note "Transcription elongation factor A protein-like 4 (TCEA-like protein 4) (Transcription elongation factor S- II protein-like 4). [Source:Uniprot/SWISSPROT;Acc:Q96EI5]"mRNA join(902911..902973,903535..903654,912066..912201, 912660..912742,913090..913956)/gene "ENSG00000133142"/note "transcript_id=ENST00000372629"CDS join(902911..902973,903535..903654,912066..912201, 912660..912742,913090..913764)/gene "ENSG00000133142"/protein_id "ENSP00000361712"/note "transcript_id=ENST00000372629"/db_xref "HGNC:TCEAL4"/db_xref "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref "RefSeq_peptide:NP_001006936.1"/db_xref "RefSeq_peptide:NP_001006937.1"/db_xref "RefSeq_peptide:NP_001006938.1"/db_xref "RefSeq_peptide:NP_079139.4"/db_xref "Uniprot/Varsplic:Q96EI5-2"/db_xref "EntrezGene:TCEAL4"/db_xref "AgilentCGH:A_14_P118508"/db_xref "AgilentCGH:A_14_P128392"/db_xref "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL4-001"/db_xref "IPI:IPI00647163.1"/db_xref "IPI:IPI00657999.3"/db_xref "protein_id:AAG44794.1"/db_xref "protein_id:AAH12296.1"/db_xref "protein_id:AAL40909.1"/db_xref "protein_id:BAB15023.1"/db_xref "protein_id:CAI42031.1"/db_xref "AFFY_HG_U133A:202371_at"/db_xref "AFFY_HG_U133A_2:202371_at"/db_xref "AFFY_HG_U133_Plus_2:202371_at"/db_xref "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016542"/db_xref "AFFY_HuEx_1_0_st_v2:4016545"/db_xref "AFFY_HuEx_1_0_st_v2:4016547"/db_xref "AFFY_HuEx_1_0_st_v2:4016548"/db_xref "AFFY_HuEx_1_0_st_v2:4016549"/db_xref "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref "Illumina_V1:GI_21361595-S"/db_xref "Illumina_V2:ILMN_15986"/db_xref "Illumina_V2:ILMN_1896"/db_xref "OTTT:OTTHUMT00000252336"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000252336"/db_xref "shares_CDS_with_OTTT:TCEAL4-001"/translation "MPAGGQAPQLTPVIPAFWEARGLPNSKGRDKVHICQCEEWKGHI SYVERDITTSEIKSLPQVSVRAFHAASGTLEWRKGNGYGRGKGWGWGRVESREAGPSV DRDGGLRVCCSQRSAKPEKEEQPVQNPRRSVKDRKRRGNLDMEKLYSENEGMASNQGK MENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGK SEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKG LAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFY PRGPREFRGGCRAPRRDIEDIPYV"mRNA join(911932..912065,912660..912732,913090..914166)/gene "ENSG00000133142"/note "transcript_id=ENST00000395036"CDS 913117..913764/gene "ENSG00000133142"/protein_id "ENSP00000378477"/note "transcript_id=ENST00000395036"/db_xref "CCDS:CCDS14510.2"/db_xref "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref "RefSeq_peptide:NP_001006936.1"/db_xref "RefSeq_peptide:NP_001006937.1"/db_xref "RefSeq_peptide:NP_001006938.1"/db_xref "RefSeq_peptide:NP_079139.4"/db_xref "RefSeq_dna:NM_001006935"/db_xref "RefSeq_dna:NM_001006937"/db_xref "RefSeq_dna:NM_024863"/db_xref "EntrezGene:TCEAL4"/db_xref "AgilentCGH:A_14_P128392"/db_xref "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL4-201"/db_xref "IPI:IPI00657999.3"/db_xref "protein_id:AAG44794.1"/db_xref "protein_id:AAH12296.1"/db_xref "protein_id:AAL40909.1"/db_xref "protein_id:BAB15023.1"/db_xref "protein_id:CAI42031.1"/db_xref "AFFY_HG_U133A:202371_at"/db_xref "AFFY_HG_U133A_2:202371_at"/db_xref "AFFY_HG_U133_Plus_2:202371_at"/db_xref "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016538"/db_xref "AFFY_HuEx_1_0_st_v2:4016540"/db_xref "AFFY_HuEx_1_0_st_v2:4016541"/db_xref "AFFY_HuEx_1_0_st_v2:4016545"/db_xref "AFFY_HuEx_1_0_st_v2:4016547"/db_xref "AFFY_HuEx_1_0_st_v2:4016548"/db_xref "AFFY_HuEx_1_0_st_v2:4016549"/db_xref "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref "Illumina_V1:GI_21361595-S"/db_xref "Illumina_V2:ILMN_1896"/translation "MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENE GKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPES EGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFD NMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV"gene 933892..936368/gene ENSG00000196507/locus_tag "TCEAL3"/note "Transcription elongation factor A protein-like 3 (TCEA-like protein 3) (Transcription elongation factor S- II protein-like 3). [Source:Uniprot/SWISSPROT;Acc:Q969E4]"mRNA join(933892..934157,935045..935114,935484..936368)/gene "ENSG00000196507"/note "transcript_id=ENST00000372628"CDS 935506..936108/gene "ENSG00000196507"/protein_id "ENSP00000361711"/note "transcript_id=ENST00000372628"/db_xref "HGNC:TCEAL3"/db_xref "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref "RefSeq_peptide:NP_001006934.1"/db_xref "RefSeq_peptide:NP_116315.1"/db_xref "RefSeq_dna:NM_001006933"/db_xref "RefSeq_dna:NM_032926"/db_xref "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-002"/db_xref "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref "AFFY_HG_U133B:227279_at"/db_xref "AFFY_HG_U133_Plus_2:227279_at"/db_xref "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref "OTTP:59471"/db_xref "OTTP:OTTHUMP00000023758"/db_xref "OTTT:OTTHUMT00000057737"/db_xref "shares_CDS_with_ENST:ENST00000243286"/db_xref "shares_CDS_with_ENST:ENST00000372627"/translation "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA join(934347..934511,935045..935114,935479..936367)/gene "ENSG00000196507"/note "transcript_id=ENST00000243286"CDS 935506..936108/gene "ENSG00000196507"/protein_id "ENSP00000243286"/note "transcript_id=ENST00000243286"/db_xref "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref "RefSeq_peptide:NP_001006934.1"/db_xref "RefSeq_peptide:NP_116315.1"/db_xref "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL3-201"/db_xref "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref "AFFY_HG_U133B:227279_at"/db_xref "AFFY_HG_U133_Plus_2:227279_at"/db_xref "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref "shares_CDS_with_OTTT:TCEAL3-001"/db_xref "shares_CDS_with_OTTT:TCEAL3-002"/translation "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA join(934406..934499,935045..935114,935479..936367)/gene "ENSG00000196507"/note "transcript_id=ENST00000372627"CDS 935506..936108/gene "ENSG00000196507"/protein_id "ENSP00000361710"/note "transcript_id=ENST00000372627"/db_xref "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref "RefSeq_peptide:NP_001006934.1"/db_xref "RefSeq_peptide:NP_116315.1"/db_xref "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-001"/db_xref "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref "AFFY_HG_U133B:227279_at"/db_xref "AFFY_HG_U133_Plus_2:227279_at"/db_xref "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref "OTTT:OTTHUMT00000057736"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref "shares_CDS_with_OTTT:TCEAL3-001"/db_xref "shares_CDS_with_OTTT:TCEAL3-002"/translation "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"gene 955161..957387/gene ENSG00000172465/locus_tag "TCEAL1"/note "transcription elongation factor A (SII)-like 1 [Source:RefSeq_peptide;Acc:NP_001006641]"mRNA join(955161..955234,955935..956002,956326..957387)/gene "ENSG00000172465"/note "transcript_id=ENST00000372626"CDS 956358..956837/gene "ENSG00000172465"/protein_id "ENSP00000361709"/note "transcript_id=ENST00000372626"/db_xref "HGNC:TCEAL1"/db_xref "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref "RefSeq_peptide:NP_001006641.1"/db_xref "RefSeq_peptide:NP_004771.2"/db_xref "RefSeq_dna:NM_001006639"/db_xref "RefSeq_dna:NM_001006640"/db_xref "RefSeq_dna:NM_004780"/db_xref "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref "AgilentProbe:A_32_P498070"/db_xref "GO:GO:0005515"/db_xref "HGNC_curated_transcript:TCEAL1-001"/db_xref "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref "AFFY_HG_U133_Plus_2:204045_at"/db_xref "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016567"/db_xref "AFFY_HuEx_1_0_st_v2:4016569"/db_xref "AFFY_HuGeneFL:M99701_at"/db_xref "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref "Illumina_V2:ILMN_23088"/db_xref "Illumina_V2:ILMN_28868"/db_xref "OTTT:OTTHUMT00000058903"/db_xref "OTTT:OTTHUMT00000058904"/db_xref "OTTT:OTTHUMT00000058905"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref "shares_CDS_with_OTTT:TCEAL1-001"/db_xref "shares_CDS_with_OTTT:TCEAL1-002"/db_xref "shares_CDS_with_OTTT:TCEAL1-003"/translation "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA join(955405..955466,955935..956002,956326..957387)/gene "ENSG00000172465"/note "transcript_id=ENST00000372624"CDS 956358..956837/gene "ENSG00000172465"/protein_id "ENSP00000361707"/note "transcript_id=ENST00000372624"/db_xref "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref "RefSeq_peptide:NP_001006641.1"/db_xref "RefSeq_peptide:NP_004771.2"/db_xref "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref "AgilentProbe:A_32_P498070"/db_xref "HGNC_automatic_transcript:TCEAL1-201"/db_xref "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref "AFFY_HG_U133_Plus_2:204045_at"/db_xref "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016567"/db_xref "AFFY_HuEx_1_0_st_v2:4016569"/db_xref "AFFY_HuGeneFL:M99701_at"/db_xref "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref "Illumina_V2:ILMN_23088"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref "shares_CDS_with_OTTT:TCEAL1-001"/db_xref "shares_CDS_with_OTTT:TCEAL1-002"/db_xref "shares_CDS_with_OTTT:TCEAL1-003"/translation "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA join(955405..955466,955935..956014,956326..957387)/gene "ENSG00000172465"/note "transcript_id=ENST00000372625"CDS 956358..956837/gene "ENSG00000172465"/protein_id "ENSP00000361708"/note "transcript_id=ENST00000372625"/db_xref "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref "RefSeq_peptide:NP_001006641.1"/db_xref "RefSeq_peptide:NP_004771.2"/db_xref "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref "HGNC_automatic_transcript:TCEAL1-202"/db_xref "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref "UniGene:Hs.95243"/db_xref "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref "AFFY_HG_U133_Plus_2:204045_at"/db_xref "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016567"/db_xref "AFFY_HuEx_1_0_st_v2:4016569"/db_xref "AFFY_HuGeneFL:M99701_at"/db_xref "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref "Illumina_V2:ILMN_23088"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref "shares_CDS_with_OTTT:TCEAL1-001"/db_xref "shares_CDS_with_OTTT:TCEAL1-002"/db_xref "shares_CDS_with_OTTT:TCEAL1-003"/translation "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"gene complement(978174..978547)/gene ENSG00000180284/locus_tag "AL049610.9"misc_RNA join(complement(978422..978547), complement(978174..978419))/gene "ENSG00000180284"/db_xref "AgilentProbe:A_24_P349428"/db_xref "Clone_based_ensembl_transcri:AL049610.9-201"/db_xref "UniGene:Hs.712229"/note "pseudogene"/note "transcript_id=ENST00000312731"exon complement(5148..5254)/note "exon_id=ENSE00001396941"exon 32225..32681/note "exon_id=ENSE00001553787"exon 40223..40290/note "exon_id=ENSE00001318862"exon 39571..39658/note "exon_id=ENSE00001520517"exon 38853..38993/note "exon_id=ENSE00001520520"exon 40978..44173/note "exon_id=ENSE00001435544"exon 40630..40707/note "exon_id=ENSE00001296863"exon 38617..38993/note "exon_id=ENSE00001322878"exon 74258..74352/note "exon_id=ENSE00001458492"exon 47398..47532/note "exon_id=ENSE00001359890"exon 75140..79981/note "exon_id=ENSE00001458491"exon 72535..72615/note "exon_id=ENSE00001038238"exon 74026..74137/note "exon_id=ENSE00001458493"exon 47167..47262/note "exon_id=ENSE00001359898"exon 75140..78879/note "exon_id=ENSE00001458499"exon 99642..99712/note "exon_id=ENSE00001501273"exon 112108..113045/note "exon_id=ENSE00001559133"exon 113050..113109/note "exon_id=ENSE00001501266"exon 113185..113253/note "exon_id=ENSE00001501264"exon 113254..113638/note "exon_id=ENSE00001547725"exon 114269..114828/note "exon_id=ENSE00001549427"exon 123275..123510/note "exon_id=ENSE00001559090"exon 122692..122931/note "exon_id=ENSE00001563701"exon complement(123532..123603)/note "exon_id=ENSE00001501262"exon 123970..124556/note "exon_id=ENSE00001557597"exon 124837..125403/note "exon_id=ENSE00001550417"exon 125910..126001/note "exon_id=ENSE00001552084"exon 126004..126327/note "exon_id=ENSE00001549044"exon 126383..127532/note "exon_id=ENSE00001556456"exon 127754..127840/note "exon_id=ENSE00001562374"exon 127842..127907/note "exon_id=ENSE00001501259"exon 129354..129411/note "exon_id=ENSE00001501257"exon 129412..129481/note "exon_id=ENSE00001501248"exon 129482..129726/note "exon_id=ENSE00001554809"exon 131073..132579/note "exon_id=ENSE00001556308"exon complement(132605..133087)/note "exon_id=ENSE00001553181"exon 133182..134268/note "exon_id=ENSE00001547959"exon complement(134334..134386)/note "exon_id=ENSE00001501243"exon 135559..135629/note "exon_id=ENSE00001501240"exon 136559..136627/note "exon_id=ENSE00001501235"exon 263713..264741/note "exon_id=ENSE00000675363"exon 333902..334513/note "exon_id=ENSE00001556141"exon complement(389101..389720)/note "exon_id=ENSE00001458479"exon complement(390537..390681)/note "exon_id=ENSE00001105457"exon complement(390083..390172)/note "exon_id=ENSE00001105455"exon complement(395306..395427)/note "exon_id=ENSE00001564718"exon complement(419437..419535)/note "exon_id=ENSE00001458464"exon complement(409839..409943)/note "exon_id=ENSE00001322720"exon complement(404055..404187)/note "exon_id=ENSE00001302178"exon complement(406454..406509)/note "exon_id=ENSE00001293836"exon complement(402265..402441)/note "exon_id=ENSE00001458442"exon complement(406025..406083)/note "exon_id=ENSE00001314340"exon complement(405800..405915)/note "exon_id=ENSE00001325188"exon complement(406204..406311)/note "exon_id=ENSE00001313270"exon complement(410050..410133)/note "exon_id=ENSE00001303810"exon complement(411156..411324)/note "exon_id=ENSE00001327556"exon complement(419437..419540)/note "exon_id=ENSE00001520502"exon complement(407017..407053)/note "exon_id=ENSE00001322569"exon complement(409445..409514)/note "exon_id=ENSE00001308091"exon complement(405001..405073)/note "exon_id=ENSE00001293474"exon complement(406589..406657)/note "exon_id=ENSE00001301210"exon complement(402682..402742)/note "exon_id=ENSE00001327914"exon complement(409201..409289)/note "exon_id=ENSE00001292623"exon complement(409634..409714)/note "exon_id=ENSE00001291407"exon complement(410783..410936)/note "exon_id=ENSE00001311406"exon complement(408696..408805)/note "exon_id=ENSE00001309255"exon complement(405662..405704)/note "exon_id=ENSE00000979224"exon 413637..415717/note "exon_id=ENSE00001547073"exon complement(482560..482652)/note "exon_id=ENSE00001438555"exon complement(532453..533340)/note "exon_id=ENSE00001554209"exon 542590..543636/note "exon_id=ENSE00001458417"exon 542123..542205/note "exon_id=ENSE00000674092"exon 541565..541679/note "exon_id=ENSE00001458401"exon 542590..543540/note "exon_id=ENSE00001458400"exon complement(581519..581634)/note "exon_id=ENSE00001520463"exon complement(579439..580458)/note "exon_id=ENSE00001419203"exon complement(581046..581118)/note "exon_id=ENSE00001263715"exon complement(580331..580420)/note "exon_id=ENSE00001458382"exon complement(580100..580231)/note "exon_id=ENSE00001458381"exon complement(585013..585759)/note "exon_id=ENSE00001558162"exon complement(585929..586022)/note "exon_id=ENSE00001556744"exon complement(600132..601031)/note "exon_id=ENSE00001458378"exon complement(601716..601783)/note "exon_id=ENSE00001458379"exon complement(603114..603313)/note "exon_id=ENSE00001458380"exon complement(637301..637458)/note "exon_id=ENSE00001458422"exon complement(637337..637448)/note "exon_id=ENSE00001458367"exon complement(635795..636422)/note "exon_id=ENSE00001458371"exon complement(636799..636874)/note "exon_id=ENSE00001038555"exon complement(635943..636422)/note "exon_id=ENSE00001458366"exon 657818..658766/note "exon_id=ENSE00001325535"exon 657818..658529/note "exon_id=ENSE00001458343"exon 657364..657481/note "exon_id=ENSE00001305966"exon 657418..657481/note "exon_id=ENSE00001458345"exon 656670..656745/note "exon_id=ENSE00001458347"exon 656678..656745/note "exon_id=ENSE00001291638"exon complement(673903..674170)/note "exon_id=ENSE00001538428"exon 683524..683602/note "exon_id=ENSE00001318428"exon 682893..683047/note "exon_id=ENSE00001292620"exon 684056..684892/note "exon_id=ENSE00001458330"exon 703951..704512/note "exon_id=ENSE00001436496"exon 703357..703547/note "exon_id=ENSE00001458275"exon 702848..703054/note "exon_id=ENSE00001458277"exon 702781..703054/note "exon_id=ENSE00001375610"exon 703951..704518/note "exon_id=ENSE00001458290"exon 702767..703054/note "exon_id=ENSE00001458297"exon 703469..703547/note "exon_id=ENSE00001416044"exon 703904..704501/note "exon_id=ENSE00001458276"exon 703904..704509/note "exon_id=ENSE00001105579"exon complement(826191..829316)/note "exon_id=ENSE00001458270"exon complement(845811..845930)/note "exon_id=ENSE00001183586"exon complement(826195..827267)/note "exon_id=ENSE00001173849"exon complement(843815..843966)/note "exon_id=ENSE00001183584"exon 903535..903654/note "exon_id=ENSE00001183544"exon 911932..912065/note "exon_id=ENSE00001520388"exon 913090..913956/note "exon_id=ENSE00001458264"exon 912660..912732/note "exon_id=ENSE00001520387"exon 913090..914166/note "exon_id=ENSE00001520386"exon 912660..912742/note "exon_id=ENSE00001183536"exon 902911..902973/note "exon_id=ENSE00001458265"exon 912066..912201/note "exon_id=ENSE00001183538"exon 933892..934157/note "exon_id=ENSE00001458260"exon 935484..936368/note "exon_id=ENSE00001458259"exon 935479..936367/note "exon_id=ENSE00000840307"exon 934406..934499/note "exon_id=ENSE00001253340"exon 935045..935114/note "exon_id=ENSE00001253332"exon 934347..934511/note "exon_id=ENSE00001458257"exon 955405..955466/note "exon_id=ENSE00001458249"exon 955161..955234/note "exon_id=ENSE00001458252"exon 956326..957387/note "exon_id=ENSE00001458247"exon 955935..956002/note "exon_id=ENSE00001406936"exon 955935..956014/note "exon_id=ENSE00001458248"exon complement(978174..978419)/note "exon_id=ENSE00001250433"exon complement(978422..978547)/note "exon_id=ENSE00001250442"STS complement(22038..22346)/standard_name "SHGC-143390"/db_xref "UniSTS_NUM:185057"/db_xref "UniSTS:SHGC-143390"/note "map_weight=1"STS complement(43711..43868)/standard_name "RH78520"/db_xref "UniSTS_NUM:73812"/db_xref "UniSTS:RH78520"/db_xref "GM99-GB4:stSG41780"/note "map_weight=1"STS complement(49890..50031)/standard_name "A008N06"/db_xref "UniSTS_NUM:69104"/db_xref "UniSTS:A008N06"/note "map_weight=1"STS complement(78623..78780)/standard_name "DXS7007E"/db_xref "UniSTS_NUM:87907"/db_xref "UniSTS:DXS7007E"/db_xref "WUSTL-X:sWXD2417"/note "map_weight=1"STS complement(126684..126809)/standard_name "DXS7692"/db_xref "UniSTS_NUM:22137"/db_xref "UniSTS:L41751"/db_xref "UniSTS:DXS7692"/db_xref "WUSTL-X:sWXD1549"/note "map_weight=1"STS complement(126736..126835)/standard_name "L47999"/db_xref "UniSTS_NUM:32118"/db_xref "UniSTS:L47999"/db_xref "WUSTL-X:sWXD1440"/note "map_weight=1"STS complement(211742..211821)/standard_name "RH93084"/db_xref "UniSTS_NUM:88543"/db_xref "UniSTS:RH93084"/db_xref "GM99-GB4:stSG48268"/note "map_weight=1"STS complement(238085..238337)/standard_name "REN69440"/db_xref "UniSTS_NUM:394240"/db_xref "UniSTS:REN69440"/note "map_weight=3"STS complement(265241..265340)/standard_name "WI-16593"/db_xref "UniSTS_NUM:77493"/db_xref "UniSTS:T40480"/db_xref "UniSTS:WI-16593"/note "map_weight=1"STS complement(290665..290925)/standard_name "STS-N47340"/db_xref "UniSTS_NUM:24198"/db_xref "UniSTS:STS-N47340"/note "map_weight=1"STS complement(290723..290889)/standard_name "RH45776"/db_xref "UniSTS_NUM:47099"/db_xref "UniSTS:RH45776"/db_xref "GM99-GB4:stSG21435"/note "map_weight=1"STS complement(331700..331780)/standard_name "L77850"/db_xref "UniSTS_NUM:53608"/db_xref "UniSTS:L77850"/db_xref "WUSTL-X:sWXD2841"/note "map_weight=1"STS complement(389114..389226)/standard_name "RH18267"/db_xref "UniSTS_NUM:60599"/db_xref "UniSTS:RH18267"/db_xref "GM99-GB4:stSG9586"/note "map_weight=1"STS complement(402304..402528)/standard_name "RH79750"/db_xref "UniSTS_NUM:88517"/db_xref "UniSTS:RH79750"/db_xref "GM99-GB4:sts-AA010600"/note "map_weight=1"STS complement(402365..402517)/standard_name "RH102997"/db_xref "UniSTS_NUM:97331"/db_xref "UniSTS:RH102997"/db_xref "GM99-GB4:stSG54822"/note "map_weight=1"STS complement(429978..430117)/standard_name "DXS8350"/db_xref "UniSTS_NUM:80166"/db_xref "UniSTS:DXS8350"/db_xref "UniSTS:L41954"/db_xref "WUSTL-X:sWXD1283"/note "map_weight=1"STS complement(451418..451578)/standard_name "L77848"/db_xref "UniSTS_NUM:23678"/db_xref "UniSTS:L77848"/db_xref "WUSTL-X:sWXD2804"/note "map_weight=1"STS complement(513264..513554)/standard_name "GDB:315297"/db_xref "UniSTS_NUM:156514"/db_xref "UniSTS:GDB:315297"/note "map_weight=1"STS complement(543431..543624)/standard_name "RH80982"/db_xref "UniSTS_NUM:92748"/db_xref "UniSTS:RH80982"/db_xref "GM99-GB4:sts-T59331"/note "map_weight=1"STS complement(543471..543550)/standard_name "RH46879"/db_xref "UniSTS_NUM:24442"/db_xref "UniSTS:RH46879"/db_xref "GM99-GB4:stSG25760"/note "map_weight=1"STS complement(579449..579628)/standard_name "RH35755"/db_xref "UniSTS_NUM:71842"/db_xref "UniSTS:RH35755"/db_xref "GM99-GB4:stSG1764"/note "map_weight=1"STS complement(579510..579715)/standard_name "A002R41"/db_xref "UniSTS_NUM:5253"/db_xref "UniSTS:A002R41"/note "map_weight=1"STS complement(579804..579931)/standard_name "STS-R85811"/db_xref "UniSTS_NUM:50348"/db_xref "UniSTS:STS-R85811"/note "map_weight=1"STS complement(635821..635946)/standard_name "WI-15922"/db_xref "UniSTS_NUM:62839"/db_xref "UniSTS:WI-15922"/db_xref "UniSTS:G23964"/db_xref "UniSTS:R43117"/note "map_weight=1"STS complement(649415..649545)/standard_name "G22062"/db_xref "UniSTS_NUM:66864"/db_xref "UniSTS:G22062"/note "map_weight=1"STS complement(658543..658670)/standard_name "RH12449"/db_xref "UniSTS_NUM:76451"/db_xref "UniSTS:RH12449"/db_xref "GM99-GB4:stSG3774"/note "map_weight=1"STS complement(684688..684818)/standard_name "A006A03"/db_xref "UniSTS_NUM:41216"/db_xref "UniSTS:A006A03"/note "map_weight=1"STS complement(684688..684818)/standard_name "G20641"/db_xref "UniSTS_NUM:41217"/db_xref "UniSTS:G20641"/note "map_weight=1"STS complement(703954..704452)/standard_name "141173"/db_xref "UniSTS_NUM:141173"/note "map_weight=1"STS complement(704257..704403)/standard_name "DXS6984E"/db_xref "UniSTS_NUM:2498"/db_xref "UniSTS:DXS6984E"/db_xref "GM99-GB4:stSG2932"/note "map_weight=1"STS complement(704291..704471)/standard_name "STS-M38188"/db_xref "UniSTS_NUM:60882"/db_xref "UniSTS:STS-M38188"/note "map_weight=1"STS complement(704352..704489)/standard_name "D5S2593"/db_xref "UniSTS_NUM:32572"/db_xref "UniSTS:D5S2593"/db_xref "UniSTS:G13550"/note "map_weight=1"STS complement(732457..732578)/standard_name "AL035140"/db_xref "UniSTS_NUM:94651"/db_xref "UniSTS:AL035140"/note "map_weight=1"STS complement(754777..754899)/standard_name "AL035146"/db_xref "UniSTS_NUM:94658"/db_xref "UniSTS:AL035146"/note "map_weight=1"STS complement(792227..792346)/standard_name "AF020181"/db_xref "UniSTS_NUM:39479"/db_xref "UniSTS:AF020181"/db_xref "WUSTL-X:sWXD3585"/note "map_weight=1"STS complement(796966..797049)/standard_name "L77845"/db_xref "UniSTS_NUM:57902"/db_xref "UniSTS:L77845"/db_xref "WUSTL-X:sWXD2783"/note "map_weight=1"STS complement(803577..803776)/standard_name "DXS1106"/db_xref "UniSTS_NUM:30651"/db_xref "UniSTS:DXS1106"/db_xref "GM99-GB4:AFM263we1"/db_xref "TNG:SHGC-1092"/note "map_weight=1"STS complement(803580..803758)/standard_name "DXS1106"/db_xref "UniSTS_NUM:63232"/db_xref "UniSTS:Z17276"/db_xref "UniSTS:DXS1106"/db_xref "Genethon:AFM263we1"/db_xref "WUSTL-X:sWXD672"/note "map_weight=1"STS complement(804260..804395)/standard_name "AF020152"/db_xref "UniSTS_NUM:45420"/db_xref "UniSTS:AF020152"/db_xref "WUSTL-X:sWXD3586"/note "map_weight=1"STS complement(853592..853826)/standard_name "DXS8096"/db_xref "UniSTS_NUM:21236"/db_xref "UniSTS:DXS8096"/db_xref "UniSTS:Z51652"/db_xref "GM99-G3:AFMa051tc5"/db_xref "SHGC-G3:SHGC-21230"/note "map_weight=1"STS complement(853592..853864)/standard_name "SHGC-150960"/db_xref "UniSTS_NUM:173428"/db_xref "UniSTS:SHGC-150960"/note "map_weight=1"STS complement(906210..906384)/standard_name "AL008935"/db_xref "UniSTS_NUM:79896"/db_xref "UniSTS:AL008935"/note "map_weight=1"STS complement(914019..914122)/standard_name "STS-W88790"/db_xref "UniSTS_NUM:82788"/db_xref "UniSTS:STS-W88790"/note "map_weight=1"STS complement(914808..914927)/standard_name "SHGC-52701"/db_xref "UniSTS_NUM:11495"/db_xref "UniSTS:SHGC-52701"/db_xref "UniSTS:G36701"/note "map_weight=1"STS complement(916610..916774)/standard_name "RH45868"/db_xref "UniSTS_NUM:63171"/db_xref "UniSTS:RH45868"/db_xref "GM99-GB4:stSG21595"/note "map_weight=1"STS complement(936075..936201)/standard_name "RH78743"/db_xref "UniSTS_NUM:4877"/db_xref "UniSTS:RH78743"/db_xref "GM99-GB4:stSG42368"/note "map_weight=2"STS complement(936198..936325)/standard_name "SHGC-34973"/db_xref "UniSTS_NUM:23617"/db_xref "UniSTS:SHGC-34973"/db_xref "UniSTS:G29704"/note "map_weight=1"STS complement(939033..939162)/standard_name "RH17462"/db_xref "UniSTS_NUM:41304"/db_xref "UniSTS:H03933"/db_xref "UniSTS:RH17462"/note "map_weight=1"STS complement(939050..939161)/standard_name "A005E02"/db_xref "UniSTS_NUM:56778"/db_xref "UniSTS:G26235"/db_xref "UniSTS:R62801"/db_xref "UniSTS:A005E02"/db_xref "WI-RH:TIGR-A005E02"/note "map_weight=1"STS complement(956876..956996)/standard_name "STS-M99701"/db_xref "UniSTS_NUM:21153"/db_xref "UniSTS:STS-M99701"/note "map_weight=1"STS complement(957185..957362)/standard_name "RH80258"/db_xref "UniSTS_NUM:91622"/db_xref "UniSTS:RH80258"/db_xref "GM99-GB4:sts-AA040895"/note "map_weight=1"misc_feature 1..109496/note "contig AL035427.17.1.161273 51778..161273(1)"misc_feature 109497..189301/note "contig AL590407.8.1.81805 2001..81805(1)"misc_feature 189302..225201/note "contig Z68871.2.1.37899 1..35900(-1)"misc_feature 225202..230371/note "contig AL669904.1.1.5270 101..5270(1)"misc_feature 230372..267593/note "contig Z95624.1.1.37322 1..37222(-1)"misc_feature 267594..267689/note "contig AL645812.1.1.195 100..195(1)"misc_feature 267690..282719/note "contig Z93943.1.1.15130 1..15030(-1)"misc_feature 282720..327653/note "contig Z75895.1.1.45038 1..44934(-1)"misc_feature 327654..365457/note "contig Z73361.1.1.40509 1..37804(-1)"misc_feature 365458..401071/note "contig AL008708.4.1.35714 101..35714(1)"misc_feature 401072..438735/note "contig Z75746.1.1.37764 1..37664(-1)"misc_feature 438736..478402/note "contig Z85997.1.1.40600 1..39667(-1)"misc_feature 478403..547950/note "contig AL035494.8.1.69648 101..69648(1)"misc_feature 547951..564664/note "contig Z81014.1.1.16814 1..16714(-1)"misc_feature 564665..605385/note "contig Z68694.1.1.40822 1..40721(-1)"misc_feature 605386..645869/note "contig AL133348.8.1.40584 101..40584(1)"misc_feature 645870..689721/note "contig Z92846.2.1.43952 101..43952(1)"misc_feature 689722..749434/note "contig AL606763.6.1.61713 2001..61713(1)"misc_feature 749435..754942/note "contig AL079333.8.1.7508 2001..7508(1)"misc_feature 754943..807439/note "contig AL117327.5.1.52597 101..52597(1)"misc_feature 807440..848370/note "contig Z69733.1.1.41031 1..40931(-1)"misc_feature 848371..875749/note "contig AL035444.9.1.27479 101..27479(1)"misc_feature 875750..897175/note "contig AL021308.1.1.21526 101..21526(1)"misc_feature 897176..939757/note "contig Z73965.1.1.42686 1..42582(-1)"misc_feature 939758..944624/note "contig Z68327.1.1.4968 1..4867(-1)"misc_feature 944625..1000000/note "contig AL049610.9.1.100269 99..55474(1)" Stack trace follows .... at org.biojavax.bio.seq.io.GenbankFormat.readRichSequence(GenbankFormat.java:462) at org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) ... 1 more From holland at eaglegenomics.com Sat Nov 15 16:59:05 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Sat, 15 Nov 2008 16:59:05 +0000 Subject: [Biojava-l] An Exception Has Occurred During Parsing ensembl Genbank file Homo_sapiens.0.dat In-Reply-To: <491EEEC0.7090209@gmail.com> References: <491EEA74.4080902@gmail.com> <491EEEC0.7090209@gmail.com> Message-ID: Based on the error stack you previously gave, it seems it is a data problem. Seeing as you've already got the file downloaded, could you filter out all the 'dbxref' lines using grep or something similar, then construct a regex to see if any of them do not match the 'dbxref="something:accession"' pattern? I suspect you'll find at least one, in which case it is indeed a data problem and needs to be addressed to the Ensembl helpdesk so they can correct their dump files. cheers, Richard 2008/11/15 pprun : > It is too large to send it by email, the exactly file name is: > Homo_sapiens.0.dat > The exception took place when first X Chr. sequence was encountered. > > Hope this can help a bit. > - Pprun > > > Richard Holland ??: >> >> There are many files on that site. I need to know which specific one >> you are working with so that I can also attempt to parse it with some >> debugging options turned on. >> >> Could you attach the file you are using to an email if possible? >> >> cheers, >> Richard >> >> >> 2008/11/15 pprun : >> >>> >>> Hi Richard, >>> Did the original file you mean is the ensembl genbank file? >>> If so, you can get it from ensembl website >>> ftp://ftp.ensembl.org/pub/current_genbank/homo_sapiens/ >>> >>> >>> >>> Richard Holland ??: >>> >>> This exception occurs when the Genbank file contains a db_xref entry >>> that does not follow the format "Type:Accession". >>> >>> It's hard to tell if this is the problem here without seeing the original >>> file. >>> >>> cheers, >>> Richard >>> >>> 2008/11/15 pprun : >>> >>> >>> Environments: >>> ------------- >>> Biojava: 1.6 >>> Java: 1.6.0_10; Java HotSpot(TM) Client VM 11.0-b15 >>> System: Linux version 2.6.24-21-generic running on i386; UTF-8; zh_CN >>> >>> >>> The detail: >>> -------------- >>> Format_object=org.biojavax.bio.seq.io.GenbankFormat >>> Accession=chromosome:NCBI36:X:101815144:102815143:1 >>> Id=null >>> Comments=Bad dbxref >>> Parse_block=FEATURES Location/Qualifierssource 1..1000000/organism >>> "Homo sapiens"/db_xref "taxon:9606"gene complement(5148..5254)/gene >>> ENSG00000193147/locus_tag "AL035427.17"misc_RNA >>> complement(5148..5254)/gene "ENSG00000193147"/db_xref >>> "Clone_based_ensembl_transcri:AL035427.17-201"/db_xref > ... > > [Message clipped] -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From holland at eaglegenomics.com Wed Nov 19 03:36:27 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Wed, 19 Nov 2008 03:36:27 +0000 Subject: [Biojava-l] BioJava 3 code usage examples Message-ID: I've posted some brief HOWTOs here on how to use the new code as it progresses: http://biojava.org/wiki/BioJava3:HowTo Hopefully the examples will make the new approach a bit clearer. The FASTA parser example does need simplifying even further, through a standard file parser utility class to go in the core module which has yet to be written. But the examples on the page are a start and show you what the convenience methods would have to implement internally (hint, hint!). cheers, Richard -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From holland at eaglegenomics.com Wed Nov 26 16:04:56 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Wed, 26 Nov 2008 16:04:56 +0000 Subject: [Biojava-l] BugZilla! Message-ID: <492D73A8.4020401@eaglegenomics.com> Hi all, There's been a few new bugs reported on BugZilla recently. Whilst the development of the new BJ features is fun, it's really important to maintain the existing code and keep on top of the issues reported. If there's anyone with a few minutes spare, or would like to learn BioJava and don't know where to start - then zapping a few virtual creepy crawlies is an excellent way to get involved and make a contribution. Here's the list of the currently outstanding problems: http://bugzilla.open-bio.org/buglist.cgi?product=BioJava&bug_status=NEW&bug_status=ASSIGNED&bug_status=REOPENED If you see one you think you can fix, or might like to try to investigate, go for it! All you have to do is assign the bug to yourself in order to take ownership of it so that people don't end up working on the same thing without knowing. cheers, Richard -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From mark.schreiber at novartis.com Thu Nov 27 02:33:05 2008 From: mark.schreiber at novartis.com (mark.schreiber at novartis.com) Date: Thu, 27 Nov 2008 10:33:05 +0800 Subject: [Biojava-l] BugZilla! In-Reply-To: <492D73A8.4020401@eaglegenomics.com> Message-ID: Hi - I would concur with this. BioJava is volunteer based and requires people to volunteer before things happen. In my experience bug reports get resolved most rapidly if the person reporting the bug can do as much of their own investigation as possible. Have a good look at the stack trace and try using a debugger. You can rapidly narrow down the underlying cause. Even if you are not confident about the best way to fix the problem, armed with all the relevant information someone more experienced will be able to tell you if you are on the right track. Unit tests are also good here. For one thing they will set-up a situation to replicate your bug. They will also provide a way to make sure the bug doesn't happen again in future releases. Finally, the more unit tests there are the more confident you can be that your proposed bug fix won't break anything else. Helping fix stuff in BioJava will definitely improve you're programming skills and greatly increase your knowledge of how the API works so by helping others you are probably helping yourself more. - Mark biojava-l-bounces at lists.open-bio.org wrote on 11/27/2008 12:04:56 AM: > Hi all, > > There's been a few new bugs reported on BugZilla recently. Whilst the > development of the new BJ features is fun, it's really important to > maintain the existing code and keep on top of the issues reported. > > If there's anyone with a few minutes spare, or would like to learn > BioJava and don't know where to start - then zapping a few virtual > creepy crawlies is an excellent way to get involved and make a contribution. > > Here's the list of the currently outstanding problems: > > http://bugzilla.open-bio.org/buglist.cgi? > product=BioJava&bug_status=NEW&bug_status=ASSIGNED&bug_status=REOPENED > > If you see one you think you can fix, or might like to try to > investigate, go for it! All you have to do is assign the bug to yourself > in order to take ownership of it so that people don't end up working on > the same thing without knowing. > > cheers, > Richard > > -- > Richard Holland, BSc MBCS > Finance Director, Eagle Genomics Ltd > M: +44 7500 438846 | E: holland at eaglegenomics.com > http://www.eaglegenomics.com/ > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l _________________________ CONFIDENTIALITY NOTICE The information contained in this e-mail message is intended only for the exclusive use of the individual or entity named above and may contain information that is privileged, confidential or exempt from disclosure under applicable law. If the reader of this message is not the intended recipient, or the employee or agent responsible for delivery of the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify the sender immediately by e-mail and delete the material from any computer. Thank you. From community at struck.lu Mon Nov 3 15:12:34 2008 From: community at struck.lu (community at struck.lu) Date: Mon, 03 Nov 2008 15:12:34 -0000 Subject: [Biojava-l] SCF: support for ambiguities In-Reply-To: References: Message-ID: I have added the missing ambiguities to DNATools.java and then used these in SCF.java. The two patches are appended to this email. Greetings, Daniel "Richard Holland" wrote: > A patch would be much appreciated! > > cheers, > Richard > > 2008/10/31 community at struck.lu : > > True. It was a first quick and dirty hack to get the rest of my project > going. > > > > I think adding support of the IUPAC ambiguities to DNATools would be the > most > > approbate solution. The SCF class can then easily be adapted. > > > > Are there any plans to do so? > > If not, I could give it a try and submit a patch for DNATools and SCF. > > > > Greetings, > > Daniel > > > > "Richard Holland" wrote: > > > >> It is the correct method, yes. > >> > >> However your code constructs a new hash set every time it does the > >> check for W or S etc.. It would be much more efficient to create > >> class-static references to the ambiguity symbols you need, instead of > >> (re)creating them every time they're encountered. A class-static gap > >> symbol reference would also be good in this situation. > >> > >> cheers, > >> Richard > >> > >> > >> > >> 2008/10/31 community at struck.lu : > >> > Hello, > >> > > >> > > >> > I am using the SCF class in the context of HIV-1 population sequencing. > In > >> > this context we do have sometimes ambiguous base calls. To support them I > >> > extended the SCF class to allow for IUPAC ambiguities up to 2 > nucleotides. > >> > > >> > Therefore I simply added the following code to the "decode" function: > >> > > >> > ######################### > >> > public Symbol decode(byte call) throws IllegalSymbolException { > >> > > >> > //get the DNA Alphabet > >> > Alphabet dna = DNATools.getDNA(); > >> > > >> > char c = (char) call; > >> > switch (c) { > >> > case 'a': > >> > case 'A': > >> > return DNATools.a(); > >> > case 'c': > >> > case 'C': > >> > return DNATools.c(); > >> > case 'g': > >> > case 'G': > >> > return DNATools.g(); > >> > case 't': > >> > case 'T': > >> > return DNATools.t(); > >> > case 'n': > >> > case 'N': > >> > return DNATools.n(); > >> > case '-': > >> > return DNATools.getDNA().getGapSymbol(); > >> > case 'w': > >> > case 'W': > >> > //make the 'W' symbol > >> > Set symbolsThatMakeW = new HashSet(); > >> > symbolsThatMakeW.add(DNATools.a()); > >> > symbolsThatMakeW.add(DNATools.t()); > >> > Symbol w = dna.getAmbiguity(symbolsThatMakeW); > >> > return w; > >> > case 's': > >> > case 'S': > >> > //make the 'S' symbol > >> > Set symbolsThatMakeS = new HashSet(); > >> > symbolsThatMakeS.add(DNATools.c()); > >> > symbolsThatMakeS.add(DNATools.g()); > >> > Symbol s = dna.getAmbiguity(symbolsThatMakeS); > >> > return s; > >> > ... (and so on) > >> > ######################### > >> > > >> > Is this the right way to do it? And if so, how can this code be submitted > > to > >> > the official biojava source code? > >> > > >> > > >> > Best regards, > >> > Daniel Struck > >> > _________________________________________________________ > >> > Mail sent using root eSolutions Webmailer - www.root.lu > >> > > >> > > >> > _______________________________________________ > >> > Biojava-l mailing list - Biojava-l at lists.open-bio.org > >> > http://lists.open-bio.org/mailman/listinfo/biojava-l > >> > > >> > >> > > > > > > _________________________________________________________ > > Mail sent using root eSolutions Webmailer - www.root.lu > > > > > > > > _________________________________________________________ Mail sent using root eSolutions Webmailer - www.root.lu -------------- next part -------------- A non-text attachment was scrubbed... Name: DNATools.diff Type: text/x-diff Size: 2128 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: SCF.diff Type: text/x-diff Size: 1149 bytes Desc: not available URL: From holland at eaglegenomics.com Sat Nov 15 09:29:11 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Sat, 15 Nov 2008 09:29:11 -0000 Subject: [Biojava-l] An Exception Has Occurred During Parsing ensembl Genbank file Homo_sapiens.0.dat In-Reply-To: References: Message-ID: This exception occurs when the Genbank file contains a db_xref entry that does not follow the format "Type:Accession". It's hard to tell if this is the problem here without seeing the original file. cheers, Richard 2008/11/15 pprun : > Environments: > ------------- > Biojava: 1.6 > Java: 1.6.0_10; Java HotSpot(TM) Client VM 11.0-b15 > System: Linux version 2.6.24-21-generic running on i386; UTF-8; zh_CN > > > The detail: > -------------- > Format_object=org.biojavax.bio.seq.io.GenbankFormat > Accession=chromosome:NCBI36:X:101815144:102815143:1 > Id=null > Comments=Bad dbxref > Parse_block=FEATURES Location/Qualifierssource 1..1000000/organism > "Homo sapiens"/db_xref "taxon:9606"gene complement(5148..5254)/gene > ENSG00000193147/locus_tag "AL035427.17"misc_RNA > complement(5148..5254)/gene "ENSG00000193147"/db_xref > "Clone_based_ensembl_transcri:AL035427.17-201"/db_xref > "RFAM:RF00026"/db_xref "AFFY_HuEx_1_0_st_v2:3985294"/note > "snRNA"/note "transcript_id=ENST00000348857"gene 32225..32681/gene > ENSG00000220050/locus_tag "RP4-769N13.2"misc_RNA 32225..32681/gene > "ENSG00000220050"/db_xref "AgilentProbe:A_32_P940920"/db_xref > "Clone_based_vega_transcript:RP4-769N13.2-001"/db_xref > "OTTT:OTTHUMT00000057625"/note "processed_pseudogene"/note > "transcript_id=ENST00000405532"gene 38617..44173/gene > ENSG00000158301/locus_tag "GPRASP2"/note "G-protein coupled > receptor-associated sorting > protein 2 (GASP-2). [Source:Uniprot/SWISSPROT;Acc:Q96D09]"mRNA > join(38617..38993,40223..40290,40630..40707,40978..44173)/gene > "ENSG00000158301"/note "transcript_id=ENST00000332262"CDS > 41311..43827/gene "ENSG00000158301"/protein_id > "ENSP00000339057"/note "transcript_id=ENST00000332262"/db_xref > "HGNC:GPRASP2"/db_xref "CCDS:CCDS14501.1"/db_xref > "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref > "RefSeq_peptide:NP_001004051.1"/db_xref > "RefSeq_peptide:NP_612446.1"/db_xref > "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref > "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref > "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref > "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref > "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref > "HGNC_curated_transcript:GPRASP2-001"/db_xref > "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref > "UniGene:Hs.603154"/db_xref "protein_id:AAH13576.1"/db_xref > "protein_id:AAH36772.1"/db_xref "protein_id:BAC04010.1"/db_xref > "protein_id:BAC04692.1"/db_xref "protein_id:CAI43060.1"/db_xref > "AFFY_HG_U133B:228027_at"/db_xref > "AFFY_HG_U133_Plus_2:228027_at"/db_xref > "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref > "AFFY_HuEx_1_0_st_v2:4016236"/db_xref > "AFFY_HuEx_1_0_st_v2:4016243"/db_xref > "AFFY_HuEx_1_0_st_v2:4016244"/db_xref > "AFFY_HuEx_1_0_st_v2:4016261"/db_xref > "AFFY_HuEx_1_0_st_v2:4016262"/db_xref > "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref > "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref > "Illumina_V2:ILMN_8313"/db_xref "OTTT:OTTHUMT00000057626"/db_xref > "shares_CDS_with_OTTT:GPRASP2-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057626"/translation > "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA > TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA > RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES > GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA > SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA > YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF > YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW > AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG > SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF > RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE > IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR > SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV > CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK > MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL > IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"mRNA > join(38853..38993,39571..39658,40223..40290,40630..40707, > 40978..44173)/gene "ENSG00000158301"/note > "transcript_id=ENST00000340885"CDS 41311..43827/gene > "ENSG00000158301"/protein_id "ENSP00000342986"/note > "transcript_id=ENST00000340885"/db_xref "CCDS:CCDS14501.1"/db_xref > "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref > "RefSeq_peptide:NP_001004051.1"/db_xref > "RefSeq_peptide:NP_612446.1"/db_xref "RefSeq_dna:NM_001004051"/db_xref > "RefSeq_dna:NM_138437"/db_xref > "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref > "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref > "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref > "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref > "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref > "HGNC_automatic_transcript:GPRASP2-201"/db_xref > "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref > "UniGene:Hs.603154"/db_xref "UniGene:Hs.656888"/db_xref > "protein_id:AAH13576.1"/db_xref "protein_id:AAH36772.1"/db_xref > "protein_id:BAC04010.1"/db_xref "protein_id:BAC04692.1"/db_xref > "protein_id:CAI43060.1"/db_xref "AFFY_HG_U133B:228027_at"/db_xref > "AFFY_HG_U133_Plus_2:228027_at"/db_xref > "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref > "AFFY_HuEx_1_0_st_v2:4016244"/db_xref > "AFFY_HuEx_1_0_st_v2:4016261"/db_xref > "AFFY_HuEx_1_0_st_v2:4016262"/db_xref > "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref > "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref > "Illumina_V2:ILMN_8313"/translation > "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA > TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA > RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES > GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA > SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA > YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF > YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW > AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG > SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF > RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE > IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR > SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV > CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK > MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL > IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"gene 47167..79981/gene > ENSG00000198908/locus_tag "BHLHB9"/note "Protein BHLHB9 (bHLHB9) > (Transcription regulator of > 60 kDa) (p60TRP). [Source:Uniprot/SWISSPROT;Acc:Q6PI77]"mRNA > join(47167..47262,47398..47532,75140..78879)/gene > "ENSG00000198908"/note "transcript_id=ENST00000372738"CDS > 75437..77080/gene "ENSG00000198908"/protein_id > "ENSP00000361823"/note "transcript_id=ENST00000372738"/db_xref > "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref > "RefSeq_peptide:NP_085142.1"/db_xref "RefSeq_dna:NM_030639"/db_xref > "EntrezGene:BHLHB9"/db_xref "AgilentProbe:A_23_P308954"/db_xref > "AgilentProbe:A_32_P348800"/db_xref > "AgilentProbe:A_32_P796164"/db_xref > "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref > "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref > "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref > "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-002"/db_xref > "IPI:IPI00513802.1"/db_xref "UniGene:Hs.4276"/db_xref > "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref > "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref > "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref > "AFFY_HG_U133A_2:213709_at"/db_xref > "AFFY_HG_U133_Plus_2:213709_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3937803"/db_xref > "AFFY_HuEx_1_0_st_v2:4016264"/db_xref > "AFFY_HuEx_1_0_st_v2:4016266"/db_xref > "AFFY_HuEx_1_0_st_v2:4016274"/db_xref > "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref > "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref > "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref > "OTTT:OTTHUMT00000057631"/db_xref > "shares_CDS_with_OTTT:BHLHB9-002"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057631"/translation > "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA > KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK > NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK > PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT > IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ > PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS > TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP > SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF > HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA > IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"mRNA > join(47167..47262,47398..47532,75140..78879)/gene > "ENSG00000198908"/note "transcript_id=ENST00000361229"CDS > 75368..77080/gene "ENSG00000198908"/protein_id > "ENSP00000354675"/note "transcript_id=ENST00000361229"/db_xref > "HGNC:BHLHB9"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref > "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref > "AgilentProbe:A_23_P308954"/db_xref > "AgilentProbe:A_32_P348800"/db_xref > "AgilentProbe:A_32_P796164"/db_xref > "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref > "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref > "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref > "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_automatic_transcript:BHLHB9-201"/db_xref > "IPI:IPI00513802.1"/db_xref "IPI:IPI00844393.1"/db_xref > "UniGene:Hs.4276"/db_xref "protein_id:AAH41409.1"/db_xref > "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref > "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref > "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref > "AFFY_HG_U133_Plus_2:213709_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3937803"/db_xref > "AFFY_HuEx_1_0_st_v2:4016264"/db_xref > "AFFY_HuEx_1_0_st_v2:4016266"/db_xref > "AFFY_HuEx_1_0_st_v2:4016274"/db_xref > "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref > "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref > "Illumina_V1:GI_39930462-S"/db_xref > "Illumina_V2:ILMN_3098"/translation > "DFDLGHIENQGQDWTGPYNWASTMAGTKNKTRAQAKTEKKAAIQ > AKAGAEREATGVVRPVAKTRAKAKAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPK > TLGKAMGDFTPKAGNESTSSTCKNEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKN > DKPEIGAQVCAEELEPAAGADCKPRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSR > IVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAE > ENACSLPVATACRPSRNTRSCSQPIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFA > CPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTL > IESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLK > ILGQLTTDFVHHYIVANYFSELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMK > ALAALKLIFNQKEAKANLVSGVAIFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEI > IETM"mRNA > join(72535..72615,74026..74137,74258..74352,75140..79981)/gene > "ENSG00000198908"/note "transcript_id=ENST00000372735"CDS > 75437..77080/gene "ENSG00000198908"/protein_id > "ENSP00000361820"/note "transcript_id=ENST00000372735"/db_xref > "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref > "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref > "AgilentCGH:A_14_P200664"/db_xref "AgilentProbe:A_23_P308954"/db_xref > "AgilentProbe:A_32_P348800"/db_xref > "AgilentProbe:A_32_P796164"/db_xref > "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref > "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref > "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref > "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-001"/db_xref > "IPI:IPI00513802.1"/db_xref "UniGene:Hs.603894"/db_xref > "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref > "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref > "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref > "AFFY_HG_U133A_2:213709_at"/db_xref > "AFFY_HG_U133_Plus_2:213709_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3937803"/db_xref > "AFFY_HuEx_1_0_st_v2:4016224"/db_xref > "AFFY_HuEx_1_0_st_v2:4016270"/db_xref > "AFFY_HuEx_1_0_st_v2:4016274"/db_xref > "AFFY_HuEx_1_0_st_v2:4016276"/db_xref > "AFFY_HuEx_1_0_st_v2:4016277"/db_xref > "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref > "Codelink:GE54272"/db_xref "Codelink:GE822399"/db_xref > "Illumina_V1:GI_14769619-S"/db_xref > "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref > "OTTP:59431"/db_xref "OTTP:OTTHUMP00000023715"/db_xref > "OTTT:OTTHUMT00000057630"/translation > "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA > KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK > NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK > PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT > IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ > PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS > TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP > SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF > HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA > IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"gene 99642..99712/gene > ENSG00000209002/locus_tag "AL035427.17"misc_RNA 99642..99712/gene > "ENSG00000209002"/db_xref > "Clone_based_ensembl_transcri:AL035427.17-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386267"gene > 112108..113045/gene ENSG00000216245/locus_tag "RP11-522L3.1"misc_RNA > 112108..113045/gene "ENSG00000216245"/db_xref > "Clone_based_vega_transcript:RP11-522L3.1-001"/db_xref > "OTTT:OTTHUMT00000057652"/note "processed_pseudogene"/note > "transcript_id=ENST00000404960"gene 113050..113109/gene > ENSG00000208995/locus_tag "AL590407.8"misc_RNA 113050..113109/gene > "ENSG00000208995"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386260"gene > 113185..113253/gene ENSG00000208993/locus_tag "AL590407.8"misc_RNA > 113185..113253/gene "ENSG00000208993"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386258"gene > 113254..114828/gene ENSG00000218436/locus_tag "RP11-522L3.2"misc_RNA > join(113254..113638,114269..114828)/gene "ENSG00000218436"/db_xref > "Clone_based_vega_transcript:RP11-522L3.2-001"/db_xref > "OTTT:OTTHUMT00000057653"/note "processed_pseudogene"/note > "transcript_id=ENST00000403360"gene 122692..123510/gene > ENSG00000220260/locus_tag "RP11-522L3.3"misc_RNA > join(122692..122931,123275..123510)/gene "ENSG00000220260"/db_xref > "Clone_based_vega_transcript:RP11-522L3.3-001"/db_xref > "AFFY_HuEx_1_0_st_v2:4016279"/db_xref > "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057654"/note > "processed_pseudogene"/note "transcript_id=ENST00000407716"gene > complement(123532..123603)/gene ENSG00000208991/locus_tag > "AL590407.8"misc_RNA complement(123532..123603)/gene > "ENSG00000208991"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386256"gene > 123970..124556/gene ENSG00000219427/locus_tag "RP11-522L3.4"misc_RNA > 123970..124556/gene "ENSG00000219427"/db_xref > "Clone_based_vega_transcript:RP11-522L3.4-001"/db_xref > "AFFY_HuEx_1_0_st_v2:4016279"/db_xref > "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057655"/note > "processed_pseudogene"/note "transcript_id=ENST00000406243"gene > 124837..126001/gene ENSG00000218342/locus_tag "RP11-522L3.5"misc_RNA > join(124837..125403,125910..126001)/gene "ENSG00000218342"/db_xref > "Clone_based_vega_transcript:RP11-522L3.5-001"/db_xref > "OTTT:OTTHUMT00000057656"/note "processed_pseudogene"/note > "transcript_id=ENST00000407350"gene 126004..126327/gene > ENSG00000220461/locus_tag "RP11-522L3.6"misc_RNA 126004..126327/gene > "ENSG00000220461"/db_xref > "Clone_based_vega_transcript:RP11-522L3.6-001"/db_xref > "OTTT:OTTHUMT00000057657"/note "processed_pseudogene"/note > "transcript_id=ENST00000403529"gene 126383..127840/gene > ENSG00000220086/locus_tag "RP11-522L3.7"misc_RNA > join(126383..127532,127754..127840)/gene "ENSG00000220086"/db_xref > "Clone_based_vega_transcript:RP11-522L3.7-001"/db_xref > "OTTT:OTTHUMT00000057648"/note "processed_pseudogene"/note > "transcript_id=ENST00000405058"gene 127842..127907/gene > ENSG00000208988/locus_tag "AL590407.8"misc_RNA 127842..127907/gene > "ENSG00000208988"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386253"gene > 129354..129411/gene ENSG00000208986/locus_tag "AL590407.8"misc_RNA > 129354..129411/gene "ENSG00000208986"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref > "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note > "transcript_id=ENST00000386251"gene 129412..129481/gene > ENSG00000208977/locus_tag "AL590407.8"misc_RNA 129412..129481/gene > "ENSG00000208977"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref > "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note > "transcript_id=ENST00000386242"gene 129482..132579/gene > ENSG00000216547/locus_tag "RP11-522L3.8"misc_RNA > join(129482..129726,131073..132579)/gene "ENSG00000216547"/db_xref > "Clone_based_vega_transcript:RP11-522L3.8-001"/db_xref > "AFFY_HuEx_1_0_st_v2:2778904"/db_xref "OTTT:OTTHUMT00000057649"/note > "processed_pseudogene"/note "transcript_id=ENST00000402841"gene > complement(132605..133087)/gene ENSG00000217506/locus_tag > "RP11-522L3.9"misc_RNA complement(132605..133087)/gene > "ENSG00000217506"/db_xref > "Clone_based_vega_transcript:RP11-522L3.9-001"/db_xref > "OTTT:OTTHUMT00000057650"/note "processed_pseudogene"/note > "transcript_id=ENST00000403019"gene 133182..134268/gene > ENSG00000218097/locus_tag "RP11-522L3.11"misc_RNA > 133182..134268/gene "ENSG00000218097"/db_xref > "Clone_based_vega_transcript:RP11-522L3.11-001"/db_xref > "AFFY_HuEx_1_0_st_v2:4016280"/db_xref > "AFFY_HuGene_1_0_st_v1:8174199"/db_xref "OTTT:OTTHUMT00000057651"/note > "processed_pseudogene"/note "transcript_id=ENST00000401627"gene > complement(134334..134386)/gene ENSG00000208972/locus_tag > "AL590407.8"misc_RNA complement(134334..134386)/gene > "ENSG00000208972"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386237"gene > 135559..135629/gene ENSG00000208969/locus_tag "AL590407.8"misc_RNA > 135559..135629/gene "ENSG00000208969"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386234"gene > 136559..136627/gene ENSG00000208964/locus_tag "AL590407.8"misc_RNA > 136559..136627/gene "ENSG00000208964"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386229"gene > 263713..264741/gene ENSG00000102128/locus_tag "RAB40AL"/note > "Ras-related protein Rab-40A-like (Ras-like GTPase). > [Source:Uniprot/SWISSPROT;Acc:P0C0E4]"mRNA 263713..264741/gene > "ENSG00000102128"/note "transcript_id=ENST00000218249"CDS > 263760..264596/gene "ENSG00000102128"/protein_id > "ENSP00000218249"/note "transcript_id=ENST00000218249"/db_xref > "HGNC:RAB40AL"/db_xref "CCDS:CCDS35353.1"/db_xref > "Uniprot/SWISSPROT:RB40L_HUMAN"/db_xref > "RefSeq_peptide:NP_001027004.1"/db_xref > "RefSeq_dna:NM_001031834"/db_xref "EntrezGene:RAB40AL"/db_xref > "AgilentProbe:A_32_P88717"/db_xref "AgilentProbe:A_32_P88719"/db_xref > "EMBL:BC101169"/db_xref "EMBL:BC101170"/db_xref > "EMBL:BC101171"/db_xref "EMBL:BC101172"/db_xref > "EMBL:Z95624"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref > "GO:GO:0005739"/db_xref "GO:GO:0005886"/db_xref > "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref > "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref > "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref > "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40AL-001"/db_xref > "IPI:IPI00555763.1"/db_xref "MIM_GENE:300405"/db_xref > "UniGene:Hs.449517"/db_xref "protein_id:AAI01170.1"/db_xref > "protein_id:AAI01171.1"/db_xref "protein_id:AAI01172.1"/db_xref > "protein_id:AAI01173.1"/db_xref "protein_id:CAB09136.1"/db_xref > "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref > "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref > "AFFY_HG_U133_Plus_2:215782_at"/db_xref > "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref > "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref > "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3985604"/db_xref > "AFFY_HuEx_1_0_st_v2:3985605"/db_xref > "AFFY_HuEx_1_0_st_v2:4016299"/db_xref > "AFFY_HuGeneFL:Z95624_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref > "Illumina_V2:ILMN_24932"/db_xref "OTTT:OTTHUMT00000057679"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057679"/db_xref > "shares_CDS_with_OTTT:RAB40AL-001"/translation > "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYS > HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF > EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN > FNIIESFTELARIVLLRHRLNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIAL > RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCK > IS"gene 333902..334513/gene ENSG00000219659/locus_tag > "LL0XNC01-73E8.1"misc_RNA 333902..334513/gene > "ENSG00000219659"/db_xref > "Clone_based_vega_transcript:LL0XNC01-73E8.1-001"/db_xref > "OTTT:OTTHUMT00000057683"/note "processed_pseudogene"/note > "transcript_id=ENST00000406951"gene complement(389101..390681)/gene > ENSG00000133169/locus_tag "BEX1"/note "Protein BEX1 (Brain-expressed > X-linked protein 1). > [Source:Uniprot/SWISSPROT;Acc:Q9HBH7]"mRNA > join(complement(390537..390681), > complement(390083..390172),complement(389101..389720))/gene > "ENSG00000133169"/note "transcript_id=ENST00000372728"CDS > complement(389338..389715)/gene "ENSG00000133169"/protein_id > "ENSP00000361813"/note "transcript_id=ENST00000372728"/db_xref > "HGNC:BEX1"/db_xref "CCDS:CCDS35354.1"/db_xref > "Uniprot/SWISSPROT:BEX1_HUMAN"/db_xref > "RefSeq_peptide:NP_060946.3"/db_xref "RefSeq_dna:NM_018476"/db_xref > "EntrezGene:BEX1"/db_xref "AgilentProbe:A_23_P159952"/db_xref > "AgilentProbe:A_32_P168503"/db_xref "EMBL:AF183416"/db_xref > "EMBL:AF220189"/db_xref "EMBL:AF237783"/db_xref > "EMBL:AK290958"/db_xref "EMBL:AL008708"/db_xref > "EMBL:AY833561"/db_xref "EMBL:BC126427"/db_xref > "EMBL:BC126429"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0007275"/db_xref > "GO:GO:0007399"/db_xref "GO:GO:0030154"/db_xref > "HGNC_curated_transcript:BEX1-001"/db_xref "IPI:IPI00020533.4"/db_xref > "MIM_GENE:300690"/db_xref "protein_id:AAF67654.1"/db_xref > "protein_id:AAG09685.1"/db_xref "protein_id:AAG09752.1"/db_xref > "protein_id:AAI26428.1"/db_xref "protein_id:AAI26430.1"/db_xref > "protein_id:AAX40679.1"/db_xref "protein_id:BAF83647.1"/db_xref > "protein_id:CAI42418.1"/db_xref "AFFY_HG_U133A:218332_at"/db_xref > "AFFY_HG_U133A_2:218332_at"/db_xref > "AFFY_HG_U133_Plus_2:218332_at"/db_xref > "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref > "AFFY_HuEx_1_0_st_v2:3985407"/db_xref > "AFFY_HuEx_1_0_st_v2:3985408"/db_xref > "AFFY_U133_X3P:g8923715_3p_at"/db_xref "Codelink:GE82387"/db_xref > "Illumina_V1:GI_15147227-S"/db_xref "Illumina_V2:ILMN_23116"/db_xref > "OTTT:OTTHUMT00000058925"/db_xref > "shares_CDS_with_OTTT:BEX1-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058925"/translation > "MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYC > VPRGNRRRFRVRQPILQYRWDMMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLS > HSLRAVSTDPPHHDHHDEFCLMP"gene complement(395306..395427)/gene > ENSG00000221010/locus_tag "AL008708.4"misc_RNA > complement(395306..395427)/gene "ENSG00000221010"/db_xref > "Clone_based_ensembl_transcri:AL008708.4-201"/note "miRNA"/note > "transcript_id=ENST00000408083"gene complement(402265..419540)/gene > ENSG00000147206/locus_tag "NXF3"/note "Nuclear RNA export factor 3 > (TAP-like protein 3) > (TAPL-3). [Source:Uniprot/SWISSPROT;Acc:Q9H4D5]"mRNA > join(complement(419437..419535), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402682..402742), > complement(402265..402441))/gene "ENSG00000147206"/note > "transcript_id=ENST00000395065"CDS join(complement(419437..419464), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402731..402742))/gene > "ENSG00000147206"/protein_id "ENSP00000378504"/note > "transcript_id=ENST00000395065"/db_xref "CCDS:CCDS14503.1"/db_xref > "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref > "RefSeq_peptide:NP_071335.1"/db_xref "RefSeq_dna:NM_022052"/db_xref > "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref > "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref > "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref > "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref > "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref > "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003729"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0006810"/db_xref > "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref > "HGNC_curated_transcript:NXF3-001"/db_xref "IPI:IPI00004930.5"/db_xref > "IPI:IPI00552760.2"/db_xref "MIM_GENE:300316"/db_xref > "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref > "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref > "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref > "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref > "AFFY_HG_U133A:220110_s_at"/db_xref > "AFFY_HG_U133A_2:220110_s_at"/db_xref > "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref > "AFFY_HG_U95E:89668_at"/db_xref > "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref > "Illumina_V1:GI_11545756-S"/db_xref "Illumina_V2:ILMN_19573"/db_xref > "OTTT:OTTHUMT00000057684"/db_xref > "shares_CDS_with_OTTT:NXF3-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057684"/translation > "MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSS > SHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRME > GNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENA > SIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQ > EALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPG > EKCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGS > FFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCK > FFKDSRNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLC > FSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFT > LVPTAFSSSVPAFSQEQQKMLPS"mRNA join(complement(419437..419540), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402682..402742), > complement(402265..402441))/gene "ENSG00000147206"/note > "transcript_id=ENST00000372709"CDS join(complement(419437..419539), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402731..402742))/gene > "ENSG00000147206"/protein_id "ENSP00000361794"/note > "transcript_id=ENST00000372709"/db_xref "HGNC:NXF3"/db_xref > "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref > "RefSeq_peptide:NP_071335.1"/db_xref > "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref > "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref > "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref > "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref > "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref > "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003729"/db_xref "GO:GO:0003729"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0005737"/db_xref > "GO:GO:0006810"/db_xref "GO:GO:0016973"/db_xref > "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref > "HGNC_automatic_transcript:NXF3-201"/db_xref > "IPI:IPI00004930.5"/db_xref "IPI:IPI00552760.2"/db_xref > "IPI:IPI00872823.1"/db_xref "MIM_GENE:300316"/db_xref > "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref > "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref > "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref > "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref > "AFFY_HG_U133A:220110_s_at"/db_xref > "AFFY_HG_U133A_2:220110_s_at"/db_xref > "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref > "AFFY_HG_U95E:89668_at"/db_xref > "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref > "Illumina_V1:GI_11545756-S"/db_xref > "Illumina_V2:ILMN_19573"/translation > "LNLLQTPVPRPHRFSSREPYKDIGKMSLPSGHTTGHTDQVVQRR > ARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRK > GSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQN > ECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF > VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASL > DVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSILELFPKLLCL > DGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSA > YHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDIVDSLS > ALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSS > SLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS"gene > 413637..415717/gene ENSG00000217368/locus_tag > "LL0XNC01-221F2.2"misc_RNA 413637..415717/gene > "ENSG00000217368"/db_xref "RefSeq_dna_predicted:XR_037041"/db_xref > "RefSeq_dna_predicted:XR_037455"/db_xref > "RefSeq_dna_predicted:XR_039021"/db_xref > "Clone_based_vega_transcript:LL0XNC01-221F2.2- > 001"/db_xref "AFFY_HuEx_1_0_st_v2:3588353"/db_xref > "AFFY_HuEx_1_0_st_v2:4016361"/db_xref > "AFFY_HuEx_1_0_st_v2:4016362"/db_xref > "AFFY_HuEx_1_0_st_v2:4016363"/db_xref > "AFFY_U133_X3P:Hs.195728.0.A1_3p_at"/db_xref > "OTTT:OTTHUMT00000057692"/note "processed_pseudogene"/note > "transcript_id=ENST00000403064"gene complement(482560..482652)/gene > ENSG00000200662/locus_tag "AL035494.8"misc_RNA > complement(482560..482652)/gene "ENSG00000200662"/db_xref > "Clone_based_ensembl_transcri:AL035494.8-201"/db_xref > "RFAM:RF00019"/note "misc_RNA"/note > "transcript_id=ENST00000363792"gene complement(532453..533340)/gene > ENSG00000220705/locus_tag "RP4-635G19.1"misc_RNA > complement(532453..533340)/gene "ENSG00000220705"/db_xref > "Clone_based_vega_transcript:RP4-635G19.1-001"/db_xref > "AFFY_HuEx_1_0_st_v2:2670016"/db_xref > "AFFY_HuEx_1_0_st_v2:3985483"/db_xref > "AFFY_HuEx_1_0_st_v2:3985484"/db_xref > "AFFY_HuEx_1_0_st_v2:3985485"/db_xref "OTTT:OTTHUMT00000057693"/note > "processed_pseudogene"/note "transcript_id=ENST00000402296"gene > 541565..543636/gene ENSG00000102409/locus_tag "BEX4"/note "Protein > BEX4 (Brain-expressed X-linked protein 4) > (BEX1-like 1) (Nerve growth factor receptor-associated > protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NWD9]"mRNA > join(541565..541679,542590..543540)/gene "ENSG00000102409"/note > "transcript_id=ENST00000372691"CDS 542595..542957/gene > "ENSG00000102409"/protein_id "ENSP00000361776"/note > "transcript_id=ENST00000372691"/db_xref "HGNC:BEX4"/db_xref > "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref > "RefSeq_peptide:NP_001073894.1"/db_xref "EntrezGene:BEX4"/db_xref > "AgilentProbe:A_24_P40551"/db_xref "AgilentProbe:A_32_P156941"/db_xref > "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref > "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref > "HGNC_curated_transcript:BEX4-002"/db_xref "IPI:IPI00739732.1"/db_xref > "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref > "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref > "AFFY_HG_U133A:215440_s_at"/db_xref > "AFFY_HG_U133A_2:215440_s_at"/db_xref > "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref > "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016383"/db_xref > "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref > "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref > "Illumina_V2:ILMN_37437"/db_xref "OTTP:59442"/db_xref > "OTTP:OTTHUMP00000023729"/db_xref > "OTTT:OTTHUMT00000057695"/translation > "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ > KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY > MRFQTPEPDNHYDFCLIP"mRNA > join(541565..541679,542123..542205,542590..543636)/gene > "ENSG00000102409"/note "transcript_id=ENST00000372695"CDS > 542595..542957/gene "ENSG00000102409"/protein_id > "ENSP00000361780"/note "transcript_id=ENST00000372695"/db_xref > "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref > "RefSeq_peptide:NP_001073894.1"/db_xref > "RefSeq_dna:NM_001080425"/db_xref > "RefSeq_dna_predicted:XM_043653"/db_xref "EntrezGene:BEX4"/db_xref > "AgilentProbe:A_23_P114391"/db_xref "AgilentProbe:A_24_P40551"/db_xref > "AgilentProbe:A_32_P156941"/db_xref > "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref > "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref > "HGNC_curated_transcript:BEX4-001"/db_xref "IPI:IPI00739732.1"/db_xref > "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref > "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref > "AFFY_HG_U133A:215440_s_at"/db_xref > "AFFY_HG_U133A_2:215440_s_at"/db_xref > "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref > "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016383"/db_xref > "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref > "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref > "Illumina_V2:ILMN_37437"/db_xref "OTTT:OTTHUMT00000057694"/db_xref > "shares_CDS_with_OTTT:BEX4-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057694"/translation > "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ > KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY > MRFQTPEPDNHYDFCLIP"gene complement(579439..581634)/gene > ENSG00000180964/locus_tag "TCEAL8"/note "Transcription elongation > factor A protein-like 8 > (TCEA-like protein 8) (Transcription elongation factor S- > II protein-like 8). [Source:Uniprot/SWISSPROT;Acc:Q8IYN2]"mRNA > join(complement(581519..581634), > complement(579439..580458))/gene "ENSG00000180964"/note > "transcript_id=ENST00000360000"CDS complement(580067..580420)/gene > "ENSG00000180964"/protein_id "ENSP00000353093"/note > "transcript_id=ENST00000360000"/db_xref "HGNC:TCEAL8"/db_xref > "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref > "RefSeq_peptide:NP_001006685.1"/db_xref > "RefSeq_peptide:NP_699164.1"/db_xref "EntrezGene:TCEAL8"/db_xref > "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref > "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref > "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref > "HGNC_curated_transcript:TCEAL8-002"/db_xref > "IPI:IPI00217810.1"/db_xref "UniGene:Hs.612731"/db_xref > "protein_id:AAH35573.1"/db_xref "protein_id:CAI41979.1"/db_xref > "AFFY_HG_U133B:224819_at"/db_xref > "AFFY_HG_U133_Plus_2:224819_at"/db_xref > "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref > "AFFY_HuEx_1_0_st_v2:3985503"/db_xref > "AFFY_HuEx_1_0_st_v2:3985505"/db_xref > "AFFY_U133_X3P:224819_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref > "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref > "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057699"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057699"/db_xref > "shares_CDS_with_OTTT:TCEAL8-002"/translation > "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ > EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK > QRHSRSRPYPVCFRP"mRNA join(complement(581519..581634), > complement(581046..581118),complement(579439..580458))/gene > "ENSG00000180964"/note "transcript_id=ENST00000372685"CDS > complement(580067..580420)/gene "ENSG00000180964"/protein_id > "ENSP00000361770"/note "transcript_id=ENST00000372685"/db_xref > "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref > "RefSeq_peptide:NP_001006685.1"/db_xref > "RefSeq_peptide:NP_699164.1"/db_xref "RefSeq_dna:NM_001006684"/db_xref > "RefSeq_dna:NM_153333"/db_xref "EntrezGene:TCEAL8"/db_xref > "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref > "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref > "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref > "HGNC_curated_transcript:TCEAL8-001"/db_xref > "IPI:IPI00217810.1"/db_xref "protein_id:AAH35573.1"/db_xref > "protein_id:CAI41979.1"/db_xref "AFFY_HG_U133B:224819_at"/db_xref > "AFFY_HG_U133_Plus_2:224819_at"/db_xref > "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref > "AFFY_HuEx_1_0_st_v2:3985503"/db_xref > "AFFY_HuEx_1_0_st_v2:3985504"/db_xref > "AFFY_HuEx_1_0_st_v2:3985505"/db_xref > "AFFY_U133_X3P:224819_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref > "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref > "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057698"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057698"/db_xref > "shares_CDS_with_OTTT:TCEAL8-001"/translation > "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ > EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK > QRHSRSRPYPVCFRP"mRNA join(complement(580331..580420), > complement(580100..580231))/gene "ENSG00000180964"/note > "transcript_id=ENST00000372681"CDS join(complement(580331..580420), > complement(580100..580231))/gene "ENSG00000180964"/protein_id > "ENSP00000361766"/note "transcript_id=ENST00000372681"/db_xref > "Uniprot/SPTREMBL:Q5H9L1_HUMAN"/db_xref "EMBL:Z68694"/db_xref > "GO:GO:0003746"/db_xref "HGNC_automatic_transcript:TCEAL8-201"/db_xref > "IPI:IPI00640443.1"/db_xref "protein_id:CAI41978.1"/db_xref > "AFFY_HuEx_1_0_st_v2:3985503"/db_xref > "AFFY_HuEx_1_0_st_v2:3985504"/translation > "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEDTPVRHLDPEEMIR > GVDELERLREEIRRVRNKFVMMHWKQRHSR"gene complement(585013..586022)/gene > ENSG00000219002/locus_tag "LL0XNC01-177E8.2"misc_RNA > join(complement(585929..586022), > complement(585013..585759))/gene "ENSG00000219002"/db_xref > "Clone_based_vega_transcript:LL0XNC01-177E8.2- > 001"/db_xref "OTTT:OTTHUMT00000057697"/note > "processed_pseudogene"/note "transcript_id=ENST00000406148"gene > complement(600132..603313)/gene ENSG00000204065/locus_tag > "TCEAL5"/note "Transcription elongation factor A protein-like 5 > (TCEA-like protein 5) (Transcription elongation factor S- > II protein-like 5). [Source:Uniprot/SWISSPROT;Acc:Q5H9L2]"mRNA > join(complement(603114..603313), > complement(601716..601783),complement(600132..601031))/gene > "ENSG00000204065"/note "transcript_id=ENST00000372680"CDS > complement(600384..601004)/gene "ENSG00000204065"/protein_id > "ENSP00000361765"/note "transcript_id=ENST00000372680"/db_xref > "HGNC:TCEAL5"/db_xref "CCDS:CCDS35356.1"/db_xref > "Uniprot/SWISSPROT:TCAL5_HUMAN"/db_xref > "RefSeq_peptide:NP_001012997.1"/db_xref > "RefSeq_dna:NM_001012979"/db_xref > "Uniprot/SPTREMBL:A2RUJ4_HUMAN"/db_xref "EntrezGene:TCEAL5"/db_xref > "AgilentProbe:A_23_P62399"/db_xref "AgilentProbe:A_32_P18470"/db_xref > "EMBL:BC132922"/db_xref "EMBL:BC132924"/db_xref > "EMBL:CH471190"/db_xref "EMBL:Z68694"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL5-001"/db_xref > "IPI:IPI00257932.1"/db_xref "UniGene:Hs.403462"/db_xref > "protein_id:AAI32923.1"/db_xref "protein_id:AAI32925.1"/db_xref > "protein_id:CAI41976.1"/db_xref "protein_id:EAW54717.1"/db_xref > "AFFY_HG_U95E:87383_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "Codelink:GE876309"/db_xref > "Illumina_V1:GI_29744085-S"/db_xref "Illumina_V2:ILMN_10460"/db_xref > "OTTP:59448"/db_xref "OTTP:OTTHUMP00000023730"/db_xref > "OTTT:OTTHUMT00000057696"/db_xref > "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057696"/db_xref > "shares_CDS_and_UTR_with_OTTT:TCEAL5-001"/translation > "MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDM > EGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRA > AEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELR > KKQKMGGFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV"gene > complement(635795..637458)/gene ENSG00000133134/locus_tag > "BEX2"/note "Protein BEX2 (Brain-expressed X-linked protein 2) > (hBex2). [Source:Uniprot/SWISSPROT;Acc:Q9BXY8]"mRNA > join(complement(637301..637458), > complement(636799..636874),complement(635795..636422))/gene > "ENSG00000133134"/note "transcript_id=ENST00000372677"CDS > complement(636031..636417)/gene "ENSG00000133134"/protein_id > "ENSP00000361762"/note "transcript_id=ENST00000372677"/db_xref > "HGNC:BEX2"/db_xref "CCDS:CCDS14505.1"/db_xref > "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref > "RefSeq_peptide:NP_116010.1"/db_xref "RefSeq_dna:NM_032621"/db_xref > "EntrezGene:BEX2"/db_xref "AgilentProbe:A_23_P22735"/db_xref > "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref > "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref > "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-002"/db_xref > "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref > "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref > "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref > "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref > "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref > "AFFY_HG_U133_Plus_2:224367_at"/db_xref > "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref > "AFFY_HuEx_1_0_st_v2:3985510"/db_xref > "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref > "Illumina_V1:hmm18828-S"/db_xref "Illumina_V1:hmm36653-S"/db_xref > "OTTT:OTTHUMT00000057702"/db_xref > "shares_CDS_with_OTTT:BEX2-002"/db_xref > "shares_CDS_with_OTTT:BEX2-003"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057702"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057703"/translation > "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS > EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK > QLSHSLRAVSTDPPHHDHHDEFCLMP"mRNA join(complement(637337..637448), > complement(636799..636874),complement(635943..636422))/gene > "ENSG00000133134"/note "transcript_id=ENST00000372674"CDS > complement(636031..636417)/gene "ENSG00000133134"/protein_id > "ENSP00000361759"/note "transcript_id=ENST00000372674"/db_xref > "CCDS:CCDS14505.1"/db_xref "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref > "RefSeq_peptide:NP_116010.1"/db_xref "EntrezGene:BEX2"/db_xref > "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref > "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref > "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-003"/db_xref > "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref > "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref > "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref > "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref > "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref > "AFFY_HG_U133_Plus_2:224367_at"/db_xref > "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref > "AFFY_HuEx_1_0_st_v2:3985510"/db_xref > "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref > "Illumina_V1:hmm18828-S"/db_xref "OTTP:59451"/db_xref > "OTTP:OTTHUMP00000023736"/db_xref "OTTT:OTTHUMT00000057703"/db_xref > "shares_CDS_with_ENST:ENST00000372677"/translation > "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS > EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK > QLSHSLRAVSTDPPHHDHHDEFCLMP"gene 656670..658766/gene > ENSG00000182916/locus_tag "TCEAL7"/note "Transcription elongation > factor A protein-like 7 > (TCEA-like protein 7) (Transcription elongation factor S- > II protein-like 7). [Source:Uniprot/SWISSPROT;Acc:Q9BRU2]"mRNA > join(656670..656745,657418..657481,657818..658529)/gene > "ENSG00000182916"/note "transcript_id=ENST00000372666"CDS > 657845..658147/gene "ENSG00000182916"/protein_id > "ENSP00000361751"/note "transcript_id=ENST00000372666"/db_xref > "HGNC:TCEAL7"/db_xref "CCDS:CCDS14506.1"/db_xref > "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref > "RefSeq_peptide:NP_689491.1"/db_xref "RefSeq_dna:NM_152278"/db_xref > "EntrezGene:TCEAL7"/db_xref "AgilentCGH:A_14_P111438"/db_xref > "AgilentProbe:A_23_P125788"/db_xref "AgilentProbe:A_24_P49106"/db_xref > "EMBL:BC005988"/db_xref "EMBL:BC016786"/db_xref > "EMBL:Z92846"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref > "HGNC_curated_transcript:TCEAL7-002"/db_xref > "IPI:IPI00059712.1"/db_xref "protein_id:AAH05988.2"/db_xref > "protein_id:AAH16786.1"/db_xref "protein_id:CAI41965.1"/db_xref > "AFFY_HG_U133B:227705_at"/db_xref > "AFFY_HG_U133_Plus_2:227705_at"/db_xref > "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016444"/db_xref > "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref > "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref > "Illumina_V2:ILMN_13373"/db_xref "OTTP:59455"/db_xref > "OTTP:OTTHUMP00000023738"/db_xref "OTTT:OTTHUMT00000057705"/db_xref > "shares_CDS_with_ENST:ENST00000332431"/translation > "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS > LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"mRNA > join(656678..656745,657364..657481,657818..658766)/gene > "ENSG00000182916"/note "transcript_id=ENST00000332431"CDS > 657845..658147/gene "ENSG00000182916"/protein_id > "ENSP00000329794"/note "transcript_id=ENST00000332431"/db_xref > "CCDS:CCDS14506.1"/db_xref "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref > "RefSeq_peptide:NP_689491.1"/db_xref "EntrezGene:TCEAL7"/db_xref > "AgilentCGH:A_14_P111438"/db_xref "AgilentProbe:A_23_P125788"/db_xref > "AgilentProbe:A_24_P49106"/db_xref "EMBL:BC005988"/db_xref > "EMBL:BC016786"/db_xref "EMBL:Z92846"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL7-001"/db_xref > "IPI:IPI00059712.1"/db_xref "UniGene:Hs.602651"/db_xref > "protein_id:AAH05988.2"/db_xref "protein_id:AAH16786.1"/db_xref > "protein_id:CAI41965.1"/db_xref "AFFY_HG_U133B:227705_at"/db_xref > "AFFY_HG_U133_Plus_2:227705_at"/db_xref > "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016446"/db_xref > "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref > "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref > "Illumina_V2:ILMN_13373"/db_xref "OTTT:OTTHUMT00000057704"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057704"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057705"/db_xref > "shares_CDS_with_OTTT:TCEAL7-001"/db_xref > "shares_CDS_with_OTTT:TCEAL7-002"/translation > "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS > LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"gene > complement(673903..674170)/gene ENSG00000215026/locus_tag > "LL0XNC01-105G4.3"misc_RNA complement(673903..674170)/gene > "ENSG00000215026"/db_xref "Clone_based_vega_transcript:LL0XNC01-105G4.3- > 001"/db_xref "OTTT:OTTHUMT00000057708"/note > "processed_pseudogene"/note "transcript_id=ENST00000399456"gene > 682893..684892/gene ENSG00000185222/locus_tag "WBP5"/note "WW > domain-binding protein 5 (WBP-5). > [Source:Uniprot/SWISSPROT;Acc:Q9UHQ7]"mRNA > join(682893..683047,684056..684892)/gene "ENSG00000185222"/note > "transcript_id=ENST00000372656"CDS 684126..684440/gene > "ENSG00000185222"/protein_id "ENSP00000361740"/note > "transcript_id=ENST00000372656"/db_xref "HGNC:WBP5"/db_xref > "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref > "RefSeq_peptide:NP_001006613.1"/db_xref > "RefSeq_peptide:NP_001006614.1"/db_xref > "RefSeq_peptide:NP_001006615.1"/db_xref > "RefSeq_peptide:NP_057387.1"/db_xref "EntrezGene:WBP5"/db_xref > "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref > "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref > "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref > "HGNC_curated_transcript:WBP5-002"/db_xref "IPI:IPI00008434.1"/db_xref > "protein_id:AAF17229.1"/db_xref "protein_id:AAH23544.1"/db_xref > "protein_id:CAD12327.1"/db_xref "AFFY_HG_Focus:217975_at"/db_xref > "AFFY_HG_U133A:217975_at"/db_xref "AFFY_HG_U133A_2:217975_at"/db_xref > "AFFY_HG_U133_Plus_2:217975_at"/db_xref > "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016456"/db_xref > "AFFY_HuEx_1_0_st_v2:4016458"/db_xref > "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref > "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref > "OTTT:OTTHUMT00000057707"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057707"/db_xref > "shares_CDS_with_OTTT:WBP5-002"/translation > "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT > FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY > LM"mRNA join(682893..683047,683524..683602,684056..684892)/gene > "ENSG00000185222"/note "transcript_id=ENST00000372661"CDS > 684126..684440/gene "ENSG00000185222"/protein_id > "ENSP00000361745"/note "transcript_id=ENST00000372661"/db_xref > "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref > "RefSeq_peptide:NP_001006613.1"/db_xref > "RefSeq_peptide:NP_001006614.1"/db_xref > "RefSeq_peptide:NP_001006615.1"/db_xref > "RefSeq_peptide:NP_057387.1"/db_xref "RefSeq_dna:NM_001006612"/db_xref > "RefSeq_dna:NM_001006613"/db_xref "RefSeq_dna:NM_001006614"/db_xref > "RefSeq_dna:NM_016303"/db_xref "EntrezGene:WBP5"/db_xref > "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref > "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref > "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref > "GO:GO:0050699"/db_xref "HGNC_curated_transcript:WBP5-001"/db_xref > "IPI:IPI00008434.1"/db_xref "protein_id:AAF17229.1"/db_xref > "protein_id:AAH23544.1"/db_xref "protein_id:CAD12327.1"/db_xref > "AFFY_HG_Focus:217975_at"/db_xref "AFFY_HG_U133A:217975_at"/db_xref > "AFFY_HG_U133A_2:217975_at"/db_xref > "AFFY_HG_U133_Plus_2:217975_at"/db_xref > "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016456"/db_xref > "AFFY_HuEx_1_0_st_v2:4016458"/db_xref > "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref > "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref > "OTTT:OTTHUMT00000057706"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057706"/db_xref > "shares_CDS_with_OTTT:WBP5-001"/translation > "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT > FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY > LM"gene 702767..704518/gene ENSG00000166681/locus_tag > "NGFRAP1"/note "Protein BEX3 (Brain-expressed X-linked protein 3) > (p75NTR-associated cell death executor) (Nerve growth > factor receptor-associated protein 1) (Ovarian granulosa > cell 13.0 kDa protein HGR74). > [Source:Uniprot/SWISSPROT;Acc:Q00994]"mRNA > join(702767..703054,703469..703547,703904..704509)/gene > "ENSG00000166681"/note "transcript_id=ENST00000299872"CDS > 703963..704268/gene "ENSG00000166681"/protein_id > "ENSP00000299872"/note "transcript_id=ENST00000299872"/db_xref > "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref > "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref > "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref > "HGNC_automatic_transcript:NGFRAP1-201"/db_xref > "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "shares_CDS_with_OTTT:NGFRAP1-002"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057710"/translation > "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR > QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA > join(702767..703054,703469..703547,703904..704509)/gene > "ENSG00000166681"/note "transcript_id=ENST00000372645"CDS > 703933..704268/gene "ENSG00000166681"/protein_id > "ENSP00000361728"/note "transcript_id=ENST00000372645"/db_xref > "HGNC:NGFRAP1"/db_xref "CCDS:CCDS14508.1"/db_xref > "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref > "RefSeq_peptide:NP_055195.1"/db_xref > "RefSeq_peptide:NP_996798.1"/db_xref > "RefSeq_peptide:NP_996800.1"/db_xref "RefSeq_dna:NM_014380"/db_xref > "RefSeq_dna:NM_206915"/db_xref "EntrezGene:NGFRAP1"/db_xref > "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref > "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref > "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref > "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref > "GO:GO:0005123"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref > "GO:GO:0005829"/db_xref "GO:GO:0006915"/db_xref > "GO:GO:0006917"/db_xref "GO:GO:0007275"/db_xref > "GO:GO:0008625"/db_xref "GO:GO:0046872"/db_xref > "HGNC_curated_transcript:NGFRAP1-001"/db_xref > "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref > "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref > "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref > "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref > "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref > "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTT:OTTHUMT00000057709"/db_xref > "shares_CDS_with_OTTT:NGFRAP1-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057709"/translation > "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA > PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD > HHDEFCLMP"mRNA join(702781..703054,703469..703547,703951..704518)/gene > "ENSG00000166681"/note "transcript_id=ENST00000361298"CDS > 703963..704268/gene "ENSG00000166681"/protein_id > "ENSP00000354843"/note "transcript_id=ENST00000361298"/db_xref > "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref > "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref > "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref > "HGNC_curated_transcript:NGFRAP1-002"/db_xref > "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTP:59460"/db_xref "OTTP:OTTHUMP00000023742"/db_xref > "OTTT:OTTHUMT00000057710"/db_xref > "shares_CDS_with_ENST:ENST00000299872"/translation > "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR > QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA > join(702848..703054,703904..704501)/gene "ENSG00000166681"/note > "transcript_id=ENST00000372635"CDS 703933..704268/gene > "ENSG00000166681"/protein_id "ENSP00000361718"/note > "transcript_id=ENST00000372635"/db_xref "CCDS:CCDS14508.1"/db_xref > "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref > "RefSeq_peptide:NP_055195.1"/db_xref > "RefSeq_peptide:NP_996798.1"/db_xref > "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref > "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref > "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref > "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref > "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0006915"/db_xref > "GO:GO:0007275"/db_xref "GO:GO:0046872"/db_xref > "HGNC_curated_transcript:NGFRAP1-003"/db_xref > "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref > "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref > "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref > "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref > "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref > "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTP:59461"/db_xref "OTTP:OTTHUMP00000023743"/db_xref > "OTTT:OTTHUMT00000057711"/translation > "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA > PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD > HHDEFCLMP"mRNA join(703357..703547,703951..704512)/gene > "ENSG00000166681"/note "transcript_id=ENST00000372634"CDS > 703963..704268/gene "ENSG00000166681"/protein_id > "ENSP00000361717"/note "transcript_id=ENST00000372634"/db_xref > "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref > "RefSeq_dna:NM_206917"/db_xref "EntrezGene:NGFRAP1"/db_xref > "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref > "AgilentProbe:A_32_P27879"/db_xref > "HGNC_curated_transcript:NGFRAP1-004"/db_xref > "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTP:59462"/db_xref "OTTP:OTTHUMP00000023744"/db_xref > "OTTT:OTTHUMT00000057712"/translation > "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR > QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"gene > complement(826191..845930)/gene ENSG00000172476/locus_tag > "RAB40A"/note "Ras-related protein Rab-40A (SOCS box-containing > protein RAR2A) (Protein Rar-2). > [Source:Uniprot/SWISSPROT;Acc:Q8WXH6]"mRNA > complement(826191..829316)/gene "ENSG00000172476"/note > "transcript_id=ENST00000372633"CDS complement(826364..827197)/gene > "ENSG00000172476"/protein_id "ENSP00000361716"/note > "transcript_id=ENST00000372633"/db_xref "HGNC:RAB40A"/db_xref > "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref > "RefSeq_peptide:NP_543155.2"/db_xref "RefSeq_dna:NM_080879"/db_xref > "EntrezGene:RAB40A"/db_xref "AgilentCGH:A_14_P129520"/db_xref > "AgilentProbe:A_23_P259912"/db_xref > "AgilentProbe:A_32_P464296"/db_xref "AgilentProbe:A_32_P88719"/db_xref > "EMBL:AB232637"/db_xref "EMBL:AF132748"/db_xref > "EMBL:AF422143"/db_xref "EMBL:BC074854"/db_xref > "EMBL:BC074855"/db_xref "EMBL:BC113501"/db_xref > "EMBL:BC117232"/db_xref "EMBL:Z69733"/db_xref > "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref > "GO:GO:0005622"/db_xref "GO:GO:0005886"/db_xref > "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref > "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref > "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref > "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40A-002"/db_xref > "IPI:IPI00514509.4"/db_xref "UniGene:Hs.27453"/db_xref > "protein_id:AAH74854.1"/db_xref "protein_id:AAH74855.1"/db_xref > "protein_id:AAI13502.1"/db_xref "protein_id:AAI17233.1"/db_xref > "protein_id:AAL60514.1"/db_xref "protein_id:AAL75949.1"/db_xref > "protein_id:BAF02899.1"/db_xref "protein_id:CAI41993.1"/db_xref > "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref > "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A:217589_at"/db_xref > "AFFY_HG_U133A_2:215782_at"/db_xref > "AFFY_HG_U133A_2:217589_at"/db_xref > "AFFY_HG_U133_Plus_2:215782_at"/db_xref > "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref > "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref > "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref > "AFFY_HG_U95Av2:33477_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3985603"/db_xref > "AFFY_HuEx_1_0_st_v2:3985604"/db_xref > "AFFY_HuEx_1_0_st_v2:3985605"/db_xref > "AFFY_HuEx_1_0_st_v2:3985606"/db_xref > "AFFY_HuEx_1_0_st_v2:3985608"/db_xref > "AFFY_HuEx_1_0_st_v2:4016299"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref > "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref > "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V1:Hs.496523-S"/db_xref > "Illumina_V2:ILMN_123867"/db_xref "Illumina_V2:ILMN_20197"/db_xref > "OTTP:59465"/db_xref "OTTP:OTTHUMP00000023746"/db_xref > "OTTT:OTTHUMT00000057714"/translation > "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS > HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF > EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN > FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL > RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI > S"mRNA join(complement(845811..845930), > complement(843815..843966),complement(826195..827267))/gene > "ENSG00000172476"/note "transcript_id=ENST00000304236"CDS > complement(826364..827197)/gene "ENSG00000172476"/protein_id > "ENSP00000305648"/note "transcript_id=ENST00000304236"/db_xref > "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref > "RefSeq_peptide:NP_543155.2"/db_xref "EntrezGene:RAB40A"/db_xref > "AgilentCGH:A_14_P129520"/db_xref "AgilentProbe:A_23_P259912"/db_xref > "AgilentProbe:A_32_P88719"/db_xref "EMBL:AB232637"/db_xref > "EMBL:AF132748"/db_xref "EMBL:AF422143"/db_xref > "EMBL:BC074854"/db_xref "EMBL:BC074855"/db_xref > "EMBL:BC113501"/db_xref "EMBL:BC117232"/db_xref > "EMBL:Z69733"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref > "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref > "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref > "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref > "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref > "HGNC_curated_transcript:RAB40A-001"/db_xref > "IPI:IPI00514509.4"/db_xref "protein_id:AAH74854.1"/db_xref > "protein_id:AAH74855.1"/db_xref "protein_id:AAI13502.1"/db_xref > "protein_id:AAI17233.1"/db_xref "protein_id:AAL60514.1"/db_xref > "protein_id:AAL75949.1"/db_xref "protein_id:BAF02899.1"/db_xref > "protein_id:CAI41993.1"/db_xref "AFFY_HC_G110:107_at"/db_xref > "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref > "AFFY_HG_U133A:217589_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref > "AFFY_HG_U133A_2:217589_at"/db_xref > "AFFY_HG_U133_Plus_2:215782_at"/db_xref > "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref > "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref > "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref > "AFFY_HG_U95Av2:33477_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3985603"/db_xref > "AFFY_HuEx_1_0_st_v2:3985604"/db_xref > "AFFY_HuEx_1_0_st_v2:3985605"/db_xref > "AFFY_HuEx_1_0_st_v2:4016299"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref > "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref > "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V2:ILMN_20197"/db_xref > "OTTP:59464"/db_xref "OTTP:OTTHUMP00000023745"/db_xref > "OTTT:OTTHUMT00000057713"/db_xref > "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057713"/db_xref > "shares_CDS_and_UTR_with_OTTT:RAB40A-001"/translation > "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS > HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF > EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN > FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL > RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI > S"gene 902911..914166/gene ENSG00000133142/locus_tag "TCEAL4"/note > "Transcription elongation factor A protein-like 4 > (TCEA-like protein 4) (Transcription elongation factor S- > II protein-like 4). [Source:Uniprot/SWISSPROT;Acc:Q96EI5]"mRNA > join(902911..902973,903535..903654,912066..912201, > 912660..912742,913090..913956)/gene "ENSG00000133142"/note > "transcript_id=ENST00000372629"CDS > join(902911..902973,903535..903654,912066..912201, > 912660..912742,913090..913764)/gene > "ENSG00000133142"/protein_id "ENSP00000361712"/note > "transcript_id=ENST00000372629"/db_xref "HGNC:TCEAL4"/db_xref > "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref > "RefSeq_peptide:NP_001006936.1"/db_xref > "RefSeq_peptide:NP_001006937.1"/db_xref > "RefSeq_peptide:NP_001006938.1"/db_xref > "RefSeq_peptide:NP_079139.4"/db_xref > "Uniprot/Varsplic:Q96EI5-2"/db_xref "EntrezGene:TCEAL4"/db_xref > "AgilentCGH:A_14_P118508"/db_xref "AgilentCGH:A_14_P128392"/db_xref > "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref > "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref > "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL4-001"/db_xref > "IPI:IPI00647163.1"/db_xref "IPI:IPI00657999.3"/db_xref > "protein_id:AAG44794.1"/db_xref "protein_id:AAH12296.1"/db_xref > "protein_id:AAL40909.1"/db_xref "protein_id:BAB15023.1"/db_xref > "protein_id:CAI42031.1"/db_xref "AFFY_HG_U133A:202371_at"/db_xref > "AFFY_HG_U133A_2:202371_at"/db_xref > "AFFY_HG_U133_Plus_2:202371_at"/db_xref > "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016542"/db_xref > "AFFY_HuEx_1_0_st_v2:4016545"/db_xref > "AFFY_HuEx_1_0_st_v2:4016547"/db_xref > "AFFY_HuEx_1_0_st_v2:4016548"/db_xref > "AFFY_HuEx_1_0_st_v2:4016549"/db_xref > "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref > "Illumina_V1:GI_21361595-S"/db_xref "Illumina_V2:ILMN_15986"/db_xref > "Illumina_V2:ILMN_1896"/db_xref "OTTT:OTTHUMT00000252336"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000252336"/db_xref > "shares_CDS_with_OTTT:TCEAL4-001"/translation > "MPAGGQAPQLTPVIPAFWEARGLPNSKGRDKVHICQCEEWKGHI > SYVERDITTSEIKSLPQVSVRAFHAASGTLEWRKGNGYGRGKGWGWGRVESREAGPSV > DRDGGLRVCCSQRSAKPEKEEQPVQNPRRSVKDRKRRGNLDMEKLYSENEGMASNQGK > MENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGK > SEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKG > LAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFY > PRGPREFRGGCRAPRRDIEDIPYV"mRNA > join(911932..912065,912660..912732,913090..914166)/gene > "ENSG00000133142"/note "transcript_id=ENST00000395036"CDS > 913117..913764/gene "ENSG00000133142"/protein_id > "ENSP00000378477"/note "transcript_id=ENST00000395036"/db_xref > "CCDS:CCDS14510.2"/db_xref "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref > "RefSeq_peptide:NP_001006936.1"/db_xref > "RefSeq_peptide:NP_001006937.1"/db_xref > "RefSeq_peptide:NP_001006938.1"/db_xref > "RefSeq_peptide:NP_079139.4"/db_xref "RefSeq_dna:NM_001006935"/db_xref > "RefSeq_dna:NM_001006937"/db_xref "RefSeq_dna:NM_024863"/db_xref > "EntrezGene:TCEAL4"/db_xref "AgilentCGH:A_14_P128392"/db_xref > "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref > "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref > "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL4-201"/db_xref > "IPI:IPI00657999.3"/db_xref "protein_id:AAG44794.1"/db_xref > "protein_id:AAH12296.1"/db_xref "protein_id:AAL40909.1"/db_xref > "protein_id:BAB15023.1"/db_xref "protein_id:CAI42031.1"/db_xref > "AFFY_HG_U133A:202371_at"/db_xref "AFFY_HG_U133A_2:202371_at"/db_xref > "AFFY_HG_U133_Plus_2:202371_at"/db_xref > "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016538"/db_xref > "AFFY_HuEx_1_0_st_v2:4016540"/db_xref > "AFFY_HuEx_1_0_st_v2:4016541"/db_xref > "AFFY_HuEx_1_0_st_v2:4016545"/db_xref > "AFFY_HuEx_1_0_st_v2:4016547"/db_xref > "AFFY_HuEx_1_0_st_v2:4016548"/db_xref > "AFFY_HuEx_1_0_st_v2:4016549"/db_xref > "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref > "Illumina_V1:GI_21361595-S"/db_xref > "Illumina_V2:ILMN_1896"/translation > "MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENE > GKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPES > EGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFD > NMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV"gene > 933892..936368/gene ENSG00000196507/locus_tag "TCEAL3"/note > "Transcription elongation factor A protein-like 3 > (TCEA-like protein 3) (Transcription elongation factor S- > II protein-like 3). [Source:Uniprot/SWISSPROT;Acc:Q969E4]"mRNA > join(933892..934157,935045..935114,935484..936368)/gene > "ENSG00000196507"/note "transcript_id=ENST00000372628"CDS > 935506..936108/gene "ENSG00000196507"/protein_id > "ENSP00000361711"/note "transcript_id=ENST00000372628"/db_xref > "HGNC:TCEAL3"/db_xref "CCDS:CCDS14511.1"/db_xref > "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref > "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref > "RefSeq_peptide:NP_001006934.1"/db_xref > "RefSeq_peptide:NP_116315.1"/db_xref "RefSeq_dna:NM_001006933"/db_xref > "RefSeq_dna:NM_032926"/db_xref > "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref > "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref > "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref > "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref > "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-002"/db_xref > "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref > "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref > "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref > "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref > "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref > "AFFY_HG_U133B:227279_at"/db_xref > "AFFY_HG_U133_Plus_2:227279_at"/db_xref > "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref > "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref > "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref > "OTTP:59471"/db_xref "OTTP:OTTHUMP00000023758"/db_xref > "OTTT:OTTHUMT00000057737"/db_xref > "shares_CDS_with_ENST:ENST00000243286"/db_xref > "shares_CDS_with_ENST:ENST00000372627"/translation > "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC > EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA > EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG > GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA > join(934347..934511,935045..935114,935479..936367)/gene > "ENSG00000196507"/note "transcript_id=ENST00000243286"CDS > 935506..936108/gene "ENSG00000196507"/protein_id > "ENSP00000243286"/note "transcript_id=ENST00000243286"/db_xref > "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref > "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref > "RefSeq_peptide:NP_001006934.1"/db_xref > "RefSeq_peptide:NP_116315.1"/db_xref > "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref > "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref > "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref > "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref > "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL3-201"/db_xref > "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref > "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref > "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref > "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref > "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref > "AFFY_HG_U133B:227279_at"/db_xref > "AFFY_HG_U133_Plus_2:227279_at"/db_xref > "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref > "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref > "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref > "shares_CDS_with_OTTT:TCEAL3-001"/db_xref > "shares_CDS_with_OTTT:TCEAL3-002"/translation > "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC > EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA > EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG > GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA > join(934406..934499,935045..935114,935479..936367)/gene > "ENSG00000196507"/note "transcript_id=ENST00000372627"CDS > 935506..936108/gene "ENSG00000196507"/protein_id > "ENSP00000361710"/note "transcript_id=ENST00000372627"/db_xref > "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref > "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref > "RefSeq_peptide:NP_001006934.1"/db_xref > "RefSeq_peptide:NP_116315.1"/db_xref > "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref > "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref > "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref > "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref > "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-001"/db_xref > "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref > "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref > "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref > "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref > "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref > "AFFY_HG_U133B:227279_at"/db_xref > "AFFY_HG_U133_Plus_2:227279_at"/db_xref > "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref > "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref > "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref > "OTTT:OTTHUMT00000057736"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref > "shares_CDS_with_OTTT:TCEAL3-001"/db_xref > "shares_CDS_with_OTTT:TCEAL3-002"/translation > "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC > EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA > EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG > GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"gene 955161..957387/gene > ENSG00000172465/locus_tag "TCEAL1"/note "transcription elongation > factor A (SII)-like 1 > [Source:RefSeq_peptide;Acc:NP_001006641]"mRNA > join(955161..955234,955935..956002,956326..957387)/gene > "ENSG00000172465"/note "transcript_id=ENST00000372626"CDS > 956358..956837/gene "ENSG00000172465"/protein_id > "ENSP00000361709"/note "transcript_id=ENST00000372626"/db_xref > "HGNC:TCEAL1"/db_xref "CCDS:CCDS35358.1"/db_xref > "RefSeq_peptide:NP_001006640.1"/db_xref > "RefSeq_peptide:NP_001006641.1"/db_xref > "RefSeq_peptide:NP_004771.2"/db_xref "RefSeq_dna:NM_001006639"/db_xref > "RefSeq_dna:NM_001006640"/db_xref "RefSeq_dna:NM_004780"/db_xref > "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref > "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref > "AgilentProbe:A_32_P498070"/db_xref "GO:GO:0005515"/db_xref > "HGNC_curated_transcript:TCEAL1-001"/db_xref > "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref > "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref > "AFFY_HG_U133A_2:204045_at"/db_xref > "AFFY_HG_U133_Plus_2:204045_at"/db_xref > "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016567"/db_xref > "AFFY_HuEx_1_0_st_v2:4016569"/db_xref > "AFFY_HuGeneFL:M99701_at"/db_xref > "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref > "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref > "Illumina_V2:ILMN_23088"/db_xref "Illumina_V2:ILMN_28868"/db_xref > "OTTT:OTTHUMT00000058903"/db_xref "OTTT:OTTHUMT00000058904"/db_xref > "OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:TCEAL1-001"/db_xref > "shares_CDS_with_OTTT:TCEAL1-002"/db_xref > "shares_CDS_with_OTTT:TCEAL1-003"/translation > "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS > EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF > KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA > join(955405..955466,955935..956002,956326..957387)/gene > "ENSG00000172465"/note "transcript_id=ENST00000372624"CDS > 956358..956837/gene "ENSG00000172465"/protein_id > "ENSP00000361707"/note "transcript_id=ENST00000372624"/db_xref > "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref > "RefSeq_peptide:NP_001006641.1"/db_xref > "RefSeq_peptide:NP_004771.2"/db_xref > "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref > "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref > "AgilentProbe:A_32_P498070"/db_xref > "HGNC_automatic_transcript:TCEAL1-201"/db_xref > "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref > "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref > "AFFY_HG_U133A_2:204045_at"/db_xref > "AFFY_HG_U133_Plus_2:204045_at"/db_xref > "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016567"/db_xref > "AFFY_HuEx_1_0_st_v2:4016569"/db_xref > "AFFY_HuGeneFL:M99701_at"/db_xref > "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref > "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref > "Illumina_V2:ILMN_23088"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:TCEAL1-001"/db_xref > "shares_CDS_with_OTTT:TCEAL1-002"/db_xref > "shares_CDS_with_OTTT:TCEAL1-003"/translation > "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS > EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF > KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA > join(955405..955466,955935..956014,956326..957387)/gene > "ENSG00000172465"/note "transcript_id=ENST00000372625"CDS > 956358..956837/gene "ENSG00000172465"/protein_id > "ENSP00000361708"/note "transcript_id=ENST00000372625"/db_xref > "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref > "RefSeq_peptide:NP_001006641.1"/db_xref > "RefSeq_peptide:NP_004771.2"/db_xref > "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref > "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref > "HGNC_automatic_transcript:TCEAL1-202"/db_xref > "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref > "UniGene:Hs.95243"/db_xref "AFFY_HG_Focus:204045_at"/db_xref > "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref > "AFFY_HG_U133_Plus_2:204045_at"/db_xref > "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016567"/db_xref > "AFFY_HuEx_1_0_st_v2:4016569"/db_xref > "AFFY_HuGeneFL:M99701_at"/db_xref > "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref > "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref > "Illumina_V2:ILMN_23088"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:TCEAL1-001"/db_xref > "shares_CDS_with_OTTT:TCEAL1-002"/db_xref > "shares_CDS_with_OTTT:TCEAL1-003"/translation > "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS > EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF > KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"gene > complement(978174..978547)/gene ENSG00000180284/locus_tag > "AL049610.9"misc_RNA join(complement(978422..978547), > complement(978174..978419))/gene "ENSG00000180284"/db_xref > "AgilentProbe:A_24_P349428"/db_xref > "Clone_based_ensembl_transcri:AL049610.9-201"/db_xref > "UniGene:Hs.712229"/note "pseudogene"/note > "transcript_id=ENST00000312731"exon complement(5148..5254)/note > "exon_id=ENSE00001396941"exon 32225..32681/note > "exon_id=ENSE00001553787"exon 40223..40290/note > "exon_id=ENSE00001318862"exon 39571..39658/note > "exon_id=ENSE00001520517"exon 38853..38993/note > "exon_id=ENSE00001520520"exon 40978..44173/note > "exon_id=ENSE00001435544"exon 40630..40707/note > "exon_id=ENSE00001296863"exon 38617..38993/note > "exon_id=ENSE00001322878"exon 74258..74352/note > "exon_id=ENSE00001458492"exon 47398..47532/note > "exon_id=ENSE00001359890"exon 75140..79981/note > "exon_id=ENSE00001458491"exon 72535..72615/note > "exon_id=ENSE00001038238"exon 74026..74137/note > "exon_id=ENSE00001458493"exon 47167..47262/note > "exon_id=ENSE00001359898"exon 75140..78879/note > "exon_id=ENSE00001458499"exon 99642..99712/note > "exon_id=ENSE00001501273"exon 112108..113045/note > "exon_id=ENSE00001559133"exon 113050..113109/note > "exon_id=ENSE00001501266"exon 113185..113253/note > "exon_id=ENSE00001501264"exon 113254..113638/note > "exon_id=ENSE00001547725"exon 114269..114828/note > "exon_id=ENSE00001549427"exon 123275..123510/note > "exon_id=ENSE00001559090"exon 122692..122931/note > "exon_id=ENSE00001563701"exon complement(123532..123603)/note > "exon_id=ENSE00001501262"exon 123970..124556/note > "exon_id=ENSE00001557597"exon 124837..125403/note > "exon_id=ENSE00001550417"exon 125910..126001/note > "exon_id=ENSE00001552084"exon 126004..126327/note > "exon_id=ENSE00001549044"exon 126383..127532/note > "exon_id=ENSE00001556456"exon 127754..127840/note > "exon_id=ENSE00001562374"exon 127842..127907/note > "exon_id=ENSE00001501259"exon 129354..129411/note > "exon_id=ENSE00001501257"exon 129412..129481/note > "exon_id=ENSE00001501248"exon 129482..129726/note > "exon_id=ENSE00001554809"exon 131073..132579/note > "exon_id=ENSE00001556308"exon complement(132605..133087)/note > "exon_id=ENSE00001553181"exon 133182..134268/note > "exon_id=ENSE00001547959"exon complement(134334..134386)/note > "exon_id=ENSE00001501243"exon 135559..135629/note > "exon_id=ENSE00001501240"exon 136559..136627/note > "exon_id=ENSE00001501235"exon 263713..264741/note > "exon_id=ENSE00000675363"exon 333902..334513/note > "exon_id=ENSE00001556141"exon complement(389101..389720)/note > "exon_id=ENSE00001458479"exon complement(390537..390681)/note > "exon_id=ENSE00001105457"exon complement(390083..390172)/note > "exon_id=ENSE00001105455"exon complement(395306..395427)/note > "exon_id=ENSE00001564718"exon complement(419437..419535)/note > "exon_id=ENSE00001458464"exon complement(409839..409943)/note > "exon_id=ENSE00001322720"exon complement(404055..404187)/note > "exon_id=ENSE00001302178"exon complement(406454..406509)/note > "exon_id=ENSE00001293836"exon complement(402265..402441)/note > "exon_id=ENSE00001458442"exon complement(406025..406083)/note > "exon_id=ENSE00001314340"exon complement(405800..405915)/note > "exon_id=ENSE00001325188"exon complement(406204..406311)/note > "exon_id=ENSE00001313270"exon complement(410050..410133)/note > "exon_id=ENSE00001303810"exon complement(411156..411324)/note > "exon_id=ENSE00001327556"exon complement(419437..419540)/note > "exon_id=ENSE00001520502"exon complement(407017..407053)/note > "exon_id=ENSE00001322569"exon complement(409445..409514)/note > "exon_id=ENSE00001308091"exon complement(405001..405073)/note > "exon_id=ENSE00001293474"exon complement(406589..406657)/note > "exon_id=ENSE00001301210"exon complement(402682..402742)/note > "exon_id=ENSE00001327914"exon complement(409201..409289)/note > "exon_id=ENSE00001292623"exon complement(409634..409714)/note > "exon_id=ENSE00001291407"exon complement(410783..410936)/note > "exon_id=ENSE00001311406"exon complement(408696..408805)/note > "exon_id=ENSE00001309255"exon complement(405662..405704)/note > "exon_id=ENSE00000979224"exon 413637..415717/note > "exon_id=ENSE00001547073"exon complement(482560..482652)/note > "exon_id=ENSE00001438555"exon complement(532453..533340)/note > "exon_id=ENSE00001554209"exon 542590..543636/note > "exon_id=ENSE00001458417"exon 542123..542205/note > "exon_id=ENSE00000674092"exon 541565..541679/note > "exon_id=ENSE00001458401"exon 542590..543540/note > "exon_id=ENSE00001458400"exon complement(581519..581634)/note > "exon_id=ENSE00001520463"exon complement(579439..580458)/note > "exon_id=ENSE00001419203"exon complement(581046..581118)/note > "exon_id=ENSE00001263715"exon complement(580331..580420)/note > "exon_id=ENSE00001458382"exon complement(580100..580231)/note > "exon_id=ENSE00001458381"exon complement(585013..585759)/note > "exon_id=ENSE00001558162"exon complement(585929..586022)/note > "exon_id=ENSE00001556744"exon complement(600132..601031)/note > "exon_id=ENSE00001458378"exon complement(601716..601783)/note > "exon_id=ENSE00001458379"exon complement(603114..603313)/note > "exon_id=ENSE00001458380"exon complement(637301..637458)/note > "exon_id=ENSE00001458422"exon complement(637337..637448)/note > "exon_id=ENSE00001458367"exon complement(635795..636422)/note > "exon_id=ENSE00001458371"exon complement(636799..636874)/note > "exon_id=ENSE00001038555"exon complement(635943..636422)/note > "exon_id=ENSE00001458366"exon 657818..658766/note > "exon_id=ENSE00001325535"exon 657818..658529/note > "exon_id=ENSE00001458343"exon 657364..657481/note > "exon_id=ENSE00001305966"exon 657418..657481/note > "exon_id=ENSE00001458345"exon 656670..656745/note > "exon_id=ENSE00001458347"exon 656678..656745/note > "exon_id=ENSE00001291638"exon complement(673903..674170)/note > "exon_id=ENSE00001538428"exon 683524..683602/note > "exon_id=ENSE00001318428"exon 682893..683047/note > "exon_id=ENSE00001292620"exon 684056..684892/note > "exon_id=ENSE00001458330"exon 703951..704512/note > "exon_id=ENSE00001436496"exon 703357..703547/note > "exon_id=ENSE00001458275"exon 702848..703054/note > "exon_id=ENSE00001458277"exon 702781..703054/note > "exon_id=ENSE00001375610"exon 703951..704518/note > "exon_id=ENSE00001458290"exon 702767..703054/note > "exon_id=ENSE00001458297"exon 703469..703547/note > "exon_id=ENSE00001416044"exon 703904..704501/note > "exon_id=ENSE00001458276"exon 703904..704509/note > "exon_id=ENSE00001105579"exon complement(826191..829316)/note > "exon_id=ENSE00001458270"exon complement(845811..845930)/note > "exon_id=ENSE00001183586"exon complement(826195..827267)/note > "exon_id=ENSE00001173849"exon complement(843815..843966)/note > "exon_id=ENSE00001183584"exon 903535..903654/note > "exon_id=ENSE00001183544"exon 911932..912065/note > "exon_id=ENSE00001520388"exon 913090..913956/note > "exon_id=ENSE00001458264"exon 912660..912732/note > "exon_id=ENSE00001520387"exon 913090..914166/note > "exon_id=ENSE00001520386"exon 912660..912742/note > "exon_id=ENSE00001183536"exon 902911..902973/note > "exon_id=ENSE00001458265"exon 912066..912201/note > "exon_id=ENSE00001183538"exon 933892..934157/note > "exon_id=ENSE00001458260"exon 935484..936368/note > "exon_id=ENSE00001458259"exon 935479..936367/note > "exon_id=ENSE00000840307"exon 934406..934499/note > "exon_id=ENSE00001253340"exon 935045..935114/note > "exon_id=ENSE00001253332"exon 934347..934511/note > "exon_id=ENSE00001458257"exon 955405..955466/note > "exon_id=ENSE00001458249"exon 955161..955234/note > "exon_id=ENSE00001458252"exon 956326..957387/note > "exon_id=ENSE00001458247"exon 955935..956002/note > "exon_id=ENSE00001406936"exon 955935..956014/note > "exon_id=ENSE00001458248"exon complement(978174..978419)/note > "exon_id=ENSE00001250433"exon complement(978422..978547)/note > "exon_id=ENSE00001250442"STS complement(22038..22346)/standard_name > "SHGC-143390"/db_xref "UniSTS_NUM:185057"/db_xref > "UniSTS:SHGC-143390"/note "map_weight=1"STS > complement(43711..43868)/standard_name "RH78520"/db_xref > "UniSTS_NUM:73812"/db_xref "UniSTS:RH78520"/db_xref > "GM99-GB4:stSG41780"/note "map_weight=1"STS > complement(49890..50031)/standard_name "A008N06"/db_xref > "UniSTS_NUM:69104"/db_xref "UniSTS:A008N06"/note "map_weight=1"STS > complement(78623..78780)/standard_name "DXS7007E"/db_xref > "UniSTS_NUM:87907"/db_xref "UniSTS:DXS7007E"/db_xref > "WUSTL-X:sWXD2417"/note "map_weight=1"STS > complement(126684..126809)/standard_name "DXS7692"/db_xref > "UniSTS_NUM:22137"/db_xref "UniSTS:L41751"/db_xref > "UniSTS:DXS7692"/db_xref "WUSTL-X:sWXD1549"/note "map_weight=1"STS > complement(126736..126835)/standard_name "L47999"/db_xref > "UniSTS_NUM:32118"/db_xref "UniSTS:L47999"/db_xref > "WUSTL-X:sWXD1440"/note "map_weight=1"STS > complement(211742..211821)/standard_name "RH93084"/db_xref > "UniSTS_NUM:88543"/db_xref "UniSTS:RH93084"/db_xref > "GM99-GB4:stSG48268"/note "map_weight=1"STS > complement(238085..238337)/standard_name "REN69440"/db_xref > "UniSTS_NUM:394240"/db_xref "UniSTS:REN69440"/note "map_weight=3"STS > complement(265241..265340)/standard_name "WI-16593"/db_xref > "UniSTS_NUM:77493"/db_xref "UniSTS:T40480"/db_xref > "UniSTS:WI-16593"/note "map_weight=1"STS > complement(290665..290925)/standard_name "STS-N47340"/db_xref > "UniSTS_NUM:24198"/db_xref "UniSTS:STS-N47340"/note > "map_weight=1"STS complement(290723..290889)/standard_name > "RH45776"/db_xref "UniSTS_NUM:47099"/db_xref > "UniSTS:RH45776"/db_xref "GM99-GB4:stSG21435"/note "map_weight=1"STS > complement(331700..331780)/standard_name "L77850"/db_xref > "UniSTS_NUM:53608"/db_xref "UniSTS:L77850"/db_xref > "WUSTL-X:sWXD2841"/note "map_weight=1"STS > complement(389114..389226)/standard_name "RH18267"/db_xref > "UniSTS_NUM:60599"/db_xref "UniSTS:RH18267"/db_xref > "GM99-GB4:stSG9586"/note "map_weight=1"STS > complement(402304..402528)/standard_name "RH79750"/db_xref > "UniSTS_NUM:88517"/db_xref "UniSTS:RH79750"/db_xref > "GM99-GB4:sts-AA010600"/note "map_weight=1"STS > complement(402365..402517)/standard_name "RH102997"/db_xref > "UniSTS_NUM:97331"/db_xref "UniSTS:RH102997"/db_xref > "GM99-GB4:stSG54822"/note "map_weight=1"STS > complement(429978..430117)/standard_name "DXS8350"/db_xref > "UniSTS_NUM:80166"/db_xref "UniSTS:DXS8350"/db_xref > "UniSTS:L41954"/db_xref "WUSTL-X:sWXD1283"/note "map_weight=1"STS > complement(451418..451578)/standard_name "L77848"/db_xref > "UniSTS_NUM:23678"/db_xref "UniSTS:L77848"/db_xref > "WUSTL-X:sWXD2804"/note "map_weight=1"STS > complement(513264..513554)/standard_name "GDB:315297"/db_xref > "UniSTS_NUM:156514"/db_xref "UniSTS:GDB:315297"/note > "map_weight=1"STS complement(543431..543624)/standard_name > "RH80982"/db_xref "UniSTS_NUM:92748"/db_xref > "UniSTS:RH80982"/db_xref "GM99-GB4:sts-T59331"/note > "map_weight=1"STS complement(543471..543550)/standard_name > "RH46879"/db_xref "UniSTS_NUM:24442"/db_xref > "UniSTS:RH46879"/db_xref "GM99-GB4:stSG25760"/note "map_weight=1"STS > complement(579449..579628)/standard_name "RH35755"/db_xref > "UniSTS_NUM:71842"/db_xref "UniSTS:RH35755"/db_xref > "GM99-GB4:stSG1764"/note "map_weight=1"STS > complement(579510..579715)/standard_name "A002R41"/db_xref > "UniSTS_NUM:5253"/db_xref "UniSTS:A002R41"/note "map_weight=1"STS > complement(579804..579931)/standard_name "STS-R85811"/db_xref > "UniSTS_NUM:50348"/db_xref "UniSTS:STS-R85811"/note > "map_weight=1"STS complement(635821..635946)/standard_name > "WI-15922"/db_xref "UniSTS_NUM:62839"/db_xref > "UniSTS:WI-15922"/db_xref "UniSTS:G23964"/db_xref > "UniSTS:R43117"/note "map_weight=1"STS > complement(649415..649545)/standard_name "G22062"/db_xref > "UniSTS_NUM:66864"/db_xref "UniSTS:G22062"/note "map_weight=1"STS > complement(658543..658670)/standard_name "RH12449"/db_xref > "UniSTS_NUM:76451"/db_xref "UniSTS:RH12449"/db_xref > "GM99-GB4:stSG3774"/note "map_weight=1"STS > complement(684688..684818)/standard_name "A006A03"/db_xref > "UniSTS_NUM:41216"/db_xref "UniSTS:A006A03"/note "map_weight=1"STS > complement(684688..684818)/standard_name "G20641"/db_xref > "UniSTS_NUM:41217"/db_xref "UniSTS:G20641"/note "map_weight=1"STS > complement(703954..704452)/standard_name "141173"/db_xref > "UniSTS_NUM:141173"/note "map_weight=1"STS > complement(704257..704403)/standard_name "DXS6984E"/db_xref > "UniSTS_NUM:2498"/db_xref "UniSTS:DXS6984E"/db_xref > "GM99-GB4:stSG2932"/note "map_weight=1"STS > complement(704291..704471)/standard_name "STS-M38188"/db_xref > "UniSTS_NUM:60882"/db_xref "UniSTS:STS-M38188"/note > "map_weight=1"STS complement(704352..704489)/standard_name > "D5S2593"/db_xref "UniSTS_NUM:32572"/db_xref > "UniSTS:D5S2593"/db_xref "UniSTS:G13550"/note "map_weight=1"STS > complement(732457..732578)/standard_name "AL035140"/db_xref > "UniSTS_NUM:94651"/db_xref "UniSTS:AL035140"/note "map_weight=1"STS > complement(754777..754899)/standard_name "AL035146"/db_xref > "UniSTS_NUM:94658"/db_xref "UniSTS:AL035146"/note "map_weight=1"STS > complement(792227..792346)/standard_name "AF020181"/db_xref > "UniSTS_NUM:39479"/db_xref "UniSTS:AF020181"/db_xref > "WUSTL-X:sWXD3585"/note "map_weight=1"STS > complement(796966..797049)/standard_name "L77845"/db_xref > "UniSTS_NUM:57902"/db_xref "UniSTS:L77845"/db_xref > "WUSTL-X:sWXD2783"/note "map_weight=1"STS > complement(803577..803776)/standard_name "DXS1106"/db_xref > "UniSTS_NUM:30651"/db_xref "UniSTS:DXS1106"/db_xref > "GM99-GB4:AFM263we1"/db_xref "TNG:SHGC-1092"/note "map_weight=1"STS > complement(803580..803758)/standard_name "DXS1106"/db_xref > "UniSTS_NUM:63232"/db_xref "UniSTS:Z17276"/db_xref > "UniSTS:DXS1106"/db_xref "Genethon:AFM263we1"/db_xref > "WUSTL-X:sWXD672"/note "map_weight=1"STS > complement(804260..804395)/standard_name "AF020152"/db_xref > "UniSTS_NUM:45420"/db_xref "UniSTS:AF020152"/db_xref > "WUSTL-X:sWXD3586"/note "map_weight=1"STS > complement(853592..853826)/standard_name "DXS8096"/db_xref > "UniSTS_NUM:21236"/db_xref "UniSTS:DXS8096"/db_xref > "UniSTS:Z51652"/db_xref "GM99-G3:AFMa051tc5"/db_xref > "SHGC-G3:SHGC-21230"/note "map_weight=1"STS > complement(853592..853864)/standard_name "SHGC-150960"/db_xref > "UniSTS_NUM:173428"/db_xref "UniSTS:SHGC-150960"/note > "map_weight=1"STS complement(906210..906384)/standard_name > "AL008935"/db_xref "UniSTS_NUM:79896"/db_xref "UniSTS:AL008935"/note > "map_weight=1"STS complement(914019..914122)/standard_name > "STS-W88790"/db_xref "UniSTS_NUM:82788"/db_xref > "UniSTS:STS-W88790"/note "map_weight=1"STS > complement(914808..914927)/standard_name "SHGC-52701"/db_xref > "UniSTS_NUM:11495"/db_xref "UniSTS:SHGC-52701"/db_xref > "UniSTS:G36701"/note "map_weight=1"STS > complement(916610..916774)/standard_name "RH45868"/db_xref > "UniSTS_NUM:63171"/db_xref "UniSTS:RH45868"/db_xref > "GM99-GB4:stSG21595"/note "map_weight=1"STS > complement(936075..936201)/standard_name "RH78743"/db_xref > "UniSTS_NUM:4877"/db_xref "UniSTS:RH78743"/db_xref > "GM99-GB4:stSG42368"/note "map_weight=2"STS > complement(936198..936325)/standard_name "SHGC-34973"/db_xref > "UniSTS_NUM:23617"/db_xref "UniSTS:SHGC-34973"/db_xref > "UniSTS:G29704"/note "map_weight=1"STS > complement(939033..939162)/standard_name "RH17462"/db_xref > "UniSTS_NUM:41304"/db_xref "UniSTS:H03933"/db_xref > "UniSTS:RH17462"/note "map_weight=1"STS > complement(939050..939161)/standard_name "A005E02"/db_xref > "UniSTS_NUM:56778"/db_xref "UniSTS:G26235"/db_xref > "UniSTS:R62801"/db_xref "UniSTS:A005E02"/db_xref > "WI-RH:TIGR-A005E02"/note "map_weight=1"STS > complement(956876..956996)/standard_name "STS-M99701"/db_xref > "UniSTS_NUM:21153"/db_xref "UniSTS:STS-M99701"/note > "map_weight=1"STS complement(957185..957362)/standard_name > "RH80258"/db_xref "UniSTS_NUM:91622"/db_xref > "UniSTS:RH80258"/db_xref "GM99-GB4:sts-AA040895"/note > "map_weight=1"misc_feature 1..109496/note "contig > AL035427.17.1.161273 51778..161273(1)"misc_feature 109497..189301/note > "contig AL590407.8.1.81805 2001..81805(1)"misc_feature > 189302..225201/note "contig Z68871.2.1.37899 1..35900(-1)"misc_feature > 225202..230371/note "contig AL669904.1.1.5270 > 101..5270(1)"misc_feature 230372..267593/note "contig > Z95624.1.1.37322 1..37222(-1)"misc_feature 267594..267689/note > "contig AL645812.1.1.195 100..195(1)"misc_feature 267690..282719/note > "contig Z93943.1.1.15130 1..15030(-1)"misc_feature > 282720..327653/note "contig Z75895.1.1.45038 1..44934(-1)"misc_feature > 327654..365457/note "contig Z73361.1.1.40509 > 1..37804(-1)"misc_feature 365458..401071/note "contig > AL008708.4.1.35714 101..35714(1)"misc_feature 401072..438735/note > "contig Z75746.1.1.37764 1..37664(-1)"misc_feature 438736..478402/note > "contig Z85997.1.1.40600 1..39667(-1)"misc_feature > 478403..547950/note "contig AL035494.8.1.69648 > 101..69648(1)"misc_feature 547951..564664/note "contig > Z81014.1.1.16814 1..16714(-1)"misc_feature 564665..605385/note > "contig Z68694.1.1.40822 1..40721(-1)"misc_feature 605386..645869/note > "contig AL133348.8.1.40584 101..40584(1)"misc_feature > 645870..689721/note "contig Z92846.2.1.43952 > 101..43952(1)"misc_feature 689722..749434/note "contig > AL606763.6.1.61713 2001..61713(1)"misc_feature 749435..754942/note > "contig AL079333.8.1.7508 2001..7508(1)"misc_feature > 754943..807439/note "contig AL117327.5.1.52597 > 101..52597(1)"misc_feature 807440..848370/note "contig > Z69733.1.1.41031 1..40931(-1)"misc_feature 848371..875749/note > "contig AL035444.9.1.27479 101..27479(1)"misc_feature > 875750..897175/note "contig AL021308.1.1.21526 > 101..21526(1)"misc_feature 897176..939757/note "contig > Z73965.1.1.42686 1..42582(-1)"misc_feature 939758..944624/note > "contig Z68327.1.1.4968 1..4867(-1)"misc_feature 944625..1000000/note > "contig AL049610.9.1.100269 99..55474(1)" > Stack trace follows .... > > > at > org.biojavax.bio.seq.io.GenbankFormat.readRichSequence(GenbankFormat.java:462) > at > org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) > ... 1 more > > > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From pzgyuanf at gmail.com Sat Nov 15 15:28:14 2008 From: pzgyuanf at gmail.com (pprun) Date: Sat, 15 Nov 2008 15:28:14 -0000 Subject: [Biojava-l] An Exception Has Occurred During Parsing ensembl Genbank file Homo_sapiens.0.dat In-Reply-To: References: Message-ID: <491EEA74.4080902@gmail.com> Hi Richard, Did the original file you mean is the ensembl genbank file? If so, you can get it from ensembl website ftp://ftp.ensembl.org/pub/current_genbank/homo_sapiens/ Richard Holland ??: > This exception occurs when the Genbank file contains a db_xref entry > that does not follow the format "Type:Accession". > > It's hard to tell if this is the problem here without seeing the original file. > > cheers, > Richard > > 2008/11/15 pprun : > >> Environments: >> ------------- >> Biojava: 1.6 >> Java: 1.6.0_10; Java HotSpot(TM) Client VM 11.0-b15 >> System: Linux version 2.6.24-21-generic running on i386; UTF-8; zh_CN >> >> >> The detail: >> -------------- >> Format_object=org.biojavax.bio.seq.io.GenbankFormat >> Accession=chromosome:NCBI36:X:101815144:102815143:1 >> Id=null >> Comments=Bad dbxref >> Parse_block=FEATURES Location/Qualifierssource 1..1000000/organism >> "Homo sapiens"/db_xref "taxon:9606"gene complement(5148..5254)/gene >> ENSG00000193147/locus_tag "AL035427.17"misc_RNA >> complement(5148..5254)/gene "ENSG00000193147"/db_xref >> "Clone_based_ensembl_transcri:AL035427.17-201"/db_xref >> "RFAM:RF00026"/db_xref "AFFY_HuEx_1_0_st_v2:3985294"/note >> "snRNA"/note "transcript_id=ENST00000348857"gene 32225..32681/gene >> ENSG00000220050/locus_tag "RP4-769N13.2"misc_RNA 32225..32681/gene >> "ENSG00000220050"/db_xref "AgilentProbe:A_32_P940920"/db_xref >> "Clone_based_vega_transcript:RP4-769N13.2-001"/db_xref >> "OTTT:OTTHUMT00000057625"/note "processed_pseudogene"/note >> "transcript_id=ENST00000405532"gene 38617..44173/gene >> ENSG00000158301/locus_tag "GPRASP2"/note "G-protein coupled >> receptor-associated sorting >> protein 2 (GASP-2). [Source:Uniprot/SWISSPROT;Acc:Q96D09]"mRNA >> join(38617..38993,40223..40290,40630..40707,40978..44173)/gene >> "ENSG00000158301"/note "transcript_id=ENST00000332262"CDS >> 41311..43827/gene "ENSG00000158301"/protein_id >> "ENSP00000339057"/note "transcript_id=ENST00000332262"/db_xref >> "HGNC:GPRASP2"/db_xref "CCDS:CCDS14501.1"/db_xref >> "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref >> "RefSeq_peptide:NP_001004051.1"/db_xref >> "RefSeq_peptide:NP_612446.1"/db_xref >> "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref >> "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref >> "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref >> "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref >> "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_curated_transcript:GPRASP2-001"/db_xref >> "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref >> "UniGene:Hs.603154"/db_xref "protein_id:AAH13576.1"/db_xref >> "protein_id:AAH36772.1"/db_xref "protein_id:BAC04010.1"/db_xref >> "protein_id:BAC04692.1"/db_xref "protein_id:CAI43060.1"/db_xref >> "AFFY_HG_U133B:228027_at"/db_xref >> "AFFY_HG_U133_Plus_2:228027_at"/db_xref >> "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016236"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016243"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016244"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016261"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016262"/db_xref >> "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref >> "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref >> "Illumina_V2:ILMN_8313"/db_xref "OTTT:OTTHUMT00000057626"/db_xref >> "shares_CDS_with_OTTT:GPRASP2-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057626"/translation >> "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA >> TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA >> RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES >> GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA >> SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA >> YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF >> YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW >> AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG >> SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF >> RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE >> IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR >> SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV >> CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK >> MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL >> IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"mRNA >> join(38853..38993,39571..39658,40223..40290,40630..40707, >> 40978..44173)/gene "ENSG00000158301"/note >> "transcript_id=ENST00000340885"CDS 41311..43827/gene >> "ENSG00000158301"/protein_id "ENSP00000342986"/note >> "transcript_id=ENST00000340885"/db_xref "CCDS:CCDS14501.1"/db_xref >> "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref >> "RefSeq_peptide:NP_001004051.1"/db_xref >> "RefSeq_peptide:NP_612446.1"/db_xref "RefSeq_dna:NM_001004051"/db_xref >> "RefSeq_dna:NM_138437"/db_xref >> "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref >> "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref >> "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref >> "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref >> "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_automatic_transcript:GPRASP2-201"/db_xref >> "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref >> "UniGene:Hs.603154"/db_xref "UniGene:Hs.656888"/db_xref >> "protein_id:AAH13576.1"/db_xref "protein_id:AAH36772.1"/db_xref >> "protein_id:BAC04010.1"/db_xref "protein_id:BAC04692.1"/db_xref >> "protein_id:CAI43060.1"/db_xref "AFFY_HG_U133B:228027_at"/db_xref >> "AFFY_HG_U133_Plus_2:228027_at"/db_xref >> "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016244"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016261"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016262"/db_xref >> "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref >> "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref >> "Illumina_V2:ILMN_8313"/translation >> "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA >> TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA >> RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES >> GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA >> SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA >> YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF >> YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW >> AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG >> SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF >> RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE >> IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR >> SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV >> CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK >> MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL >> IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"gene 47167..79981/gene >> ENSG00000198908/locus_tag "BHLHB9"/note "Protein BHLHB9 (bHLHB9) >> (Transcription regulator of >> 60 kDa) (p60TRP). [Source:Uniprot/SWISSPROT;Acc:Q6PI77]"mRNA >> join(47167..47262,47398..47532,75140..78879)/gene >> "ENSG00000198908"/note "transcript_id=ENST00000372738"CDS >> 75437..77080/gene "ENSG00000198908"/protein_id >> "ENSP00000361823"/note "transcript_id=ENST00000372738"/db_xref >> "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref >> "RefSeq_peptide:NP_085142.1"/db_xref "RefSeq_dna:NM_030639"/db_xref >> "EntrezGene:BHLHB9"/db_xref "AgilentProbe:A_23_P308954"/db_xref >> "AgilentProbe:A_32_P348800"/db_xref >> "AgilentProbe:A_32_P796164"/db_xref >> "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref >> "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref >> "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref >> "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-002"/db_xref >> "IPI:IPI00513802.1"/db_xref "UniGene:Hs.4276"/db_xref >> "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref >> "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref >> "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref >> "AFFY_HG_U133A_2:213709_at"/db_xref >> "AFFY_HG_U133_Plus_2:213709_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3937803"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016264"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016266"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016274"/db_xref >> "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref >> "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref >> "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref >> "OTTT:OTTHUMT00000057631"/db_xref >> "shares_CDS_with_OTTT:BHLHB9-002"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057631"/translation >> "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA >> KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK >> NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK >> PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT >> IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ >> PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS >> TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP >> SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF >> HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA >> IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"mRNA >> join(47167..47262,47398..47532,75140..78879)/gene >> "ENSG00000198908"/note "transcript_id=ENST00000361229"CDS >> 75368..77080/gene "ENSG00000198908"/protein_id >> "ENSP00000354675"/note "transcript_id=ENST00000361229"/db_xref >> "HGNC:BHLHB9"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref >> "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref >> "AgilentProbe:A_23_P308954"/db_xref >> "AgilentProbe:A_32_P348800"/db_xref >> "AgilentProbe:A_32_P796164"/db_xref >> "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref >> "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref >> "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref >> "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_automatic_transcript:BHLHB9-201"/db_xref >> "IPI:IPI00513802.1"/db_xref "IPI:IPI00844393.1"/db_xref >> "UniGene:Hs.4276"/db_xref "protein_id:AAH41409.1"/db_xref >> "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref >> "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref >> "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref >> "AFFY_HG_U133_Plus_2:213709_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3937803"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016264"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016266"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016274"/db_xref >> "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref >> "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref >> "Illumina_V1:GI_39930462-S"/db_xref >> "Illumina_V2:ILMN_3098"/translation >> "DFDLGHIENQGQDWTGPYNWASTMAGTKNKTRAQAKTEKKAAIQ >> AKAGAEREATGVVRPVAKTRAKAKAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPK >> TLGKAMGDFTPKAGNESTSSTCKNEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKN >> DKPEIGAQVCAEELEPAAGADCKPRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSR >> IVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAE >> ENACSLPVATACRPSRNTRSCSQPIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFA >> CPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTL >> IESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLK >> ILGQLTTDFVHHYIVANYFSELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMK >> ALAALKLIFNQKEAKANLVSGVAIFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEI >> IETM"mRNA >> join(72535..72615,74026..74137,74258..74352,75140..79981)/gene >> "ENSG00000198908"/note "transcript_id=ENST00000372735"CDS >> 75437..77080/gene "ENSG00000198908"/protein_id >> "ENSP00000361820"/note "transcript_id=ENST00000372735"/db_xref >> "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref >> "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref >> "AgilentCGH:A_14_P200664"/db_xref "AgilentProbe:A_23_P308954"/db_xref >> "AgilentProbe:A_32_P348800"/db_xref >> "AgilentProbe:A_32_P796164"/db_xref >> "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref >> "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref >> "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref >> "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-001"/db_xref >> "IPI:IPI00513802.1"/db_xref "UniGene:Hs.603894"/db_xref >> "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref >> "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref >> "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref >> "AFFY_HG_U133A_2:213709_at"/db_xref >> "AFFY_HG_U133_Plus_2:213709_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3937803"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016224"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016270"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016274"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016276"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016277"/db_xref >> "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref >> "Codelink:GE54272"/db_xref "Codelink:GE822399"/db_xref >> "Illumina_V1:GI_14769619-S"/db_xref >> "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref >> "OTTP:59431"/db_xref "OTTP:OTTHUMP00000023715"/db_xref >> "OTTT:OTTHUMT00000057630"/translation >> "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA >> KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK >> NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK >> PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT >> IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ >> PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS >> TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP >> SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF >> HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA >> IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"gene 99642..99712/gene >> ENSG00000209002/locus_tag "AL035427.17"misc_RNA 99642..99712/gene >> "ENSG00000209002"/db_xref >> "Clone_based_ensembl_transcri:AL035427.17-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386267"gene >> 112108..113045/gene ENSG00000216245/locus_tag "RP11-522L3.1"misc_RNA >> 112108..113045/gene "ENSG00000216245"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.1-001"/db_xref >> "OTTT:OTTHUMT00000057652"/note "processed_pseudogene"/note >> "transcript_id=ENST00000404960"gene 113050..113109/gene >> ENSG00000208995/locus_tag "AL590407.8"misc_RNA 113050..113109/gene >> "ENSG00000208995"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386260"gene >> 113185..113253/gene ENSG00000208993/locus_tag "AL590407.8"misc_RNA >> 113185..113253/gene "ENSG00000208993"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386258"gene >> 113254..114828/gene ENSG00000218436/locus_tag "RP11-522L3.2"misc_RNA >> join(113254..113638,114269..114828)/gene "ENSG00000218436"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.2-001"/db_xref >> "OTTT:OTTHUMT00000057653"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403360"gene 122692..123510/gene >> ENSG00000220260/locus_tag "RP11-522L3.3"misc_RNA >> join(122692..122931,123275..123510)/gene "ENSG00000220260"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.3-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016279"/db_xref >> "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057654"/note >> "processed_pseudogene"/note "transcript_id=ENST00000407716"gene >> complement(123532..123603)/gene ENSG00000208991/locus_tag >> "AL590407.8"misc_RNA complement(123532..123603)/gene >> "ENSG00000208991"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386256"gene >> 123970..124556/gene ENSG00000219427/locus_tag "RP11-522L3.4"misc_RNA >> 123970..124556/gene "ENSG00000219427"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.4-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016279"/db_xref >> "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057655"/note >> "processed_pseudogene"/note "transcript_id=ENST00000406243"gene >> 124837..126001/gene ENSG00000218342/locus_tag "RP11-522L3.5"misc_RNA >> join(124837..125403,125910..126001)/gene "ENSG00000218342"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.5-001"/db_xref >> "OTTT:OTTHUMT00000057656"/note "processed_pseudogene"/note >> "transcript_id=ENST00000407350"gene 126004..126327/gene >> ENSG00000220461/locus_tag "RP11-522L3.6"misc_RNA 126004..126327/gene >> "ENSG00000220461"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.6-001"/db_xref >> "OTTT:OTTHUMT00000057657"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403529"gene 126383..127840/gene >> ENSG00000220086/locus_tag "RP11-522L3.7"misc_RNA >> join(126383..127532,127754..127840)/gene "ENSG00000220086"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.7-001"/db_xref >> "OTTT:OTTHUMT00000057648"/note "processed_pseudogene"/note >> "transcript_id=ENST00000405058"gene 127842..127907/gene >> ENSG00000208988/locus_tag "AL590407.8"misc_RNA 127842..127907/gene >> "ENSG00000208988"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386253"gene >> 129354..129411/gene ENSG00000208986/locus_tag "AL590407.8"misc_RNA >> 129354..129411/gene "ENSG00000208986"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref >> "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note >> "transcript_id=ENST00000386251"gene 129412..129481/gene >> ENSG00000208977/locus_tag "AL590407.8"misc_RNA 129412..129481/gene >> "ENSG00000208977"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref >> "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note >> "transcript_id=ENST00000386242"gene 129482..132579/gene >> ENSG00000216547/locus_tag "RP11-522L3.8"misc_RNA >> join(129482..129726,131073..132579)/gene "ENSG00000216547"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.8-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:2778904"/db_xref "OTTT:OTTHUMT00000057649"/note >> "processed_pseudogene"/note "transcript_id=ENST00000402841"gene >> complement(132605..133087)/gene ENSG00000217506/locus_tag >> "RP11-522L3.9"misc_RNA complement(132605..133087)/gene >> "ENSG00000217506"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.9-001"/db_xref >> "OTTT:OTTHUMT00000057650"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403019"gene 133182..134268/gene >> ENSG00000218097/locus_tag "RP11-522L3.11"misc_RNA >> 133182..134268/gene "ENSG00000218097"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.11-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016280"/db_xref >> "AFFY_HuGene_1_0_st_v1:8174199"/db_xref "OTTT:OTTHUMT00000057651"/note >> "processed_pseudogene"/note "transcript_id=ENST00000401627"gene >> complement(134334..134386)/gene ENSG00000208972/locus_tag >> "AL590407.8"misc_RNA complement(134334..134386)/gene >> "ENSG00000208972"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386237"gene >> 135559..135629/gene ENSG00000208969/locus_tag "AL590407.8"misc_RNA >> 135559..135629/gene "ENSG00000208969"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386234"gene >> 136559..136627/gene ENSG00000208964/locus_tag "AL590407.8"misc_RNA >> 136559..136627/gene "ENSG00000208964"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386229"gene >> 263713..264741/gene ENSG00000102128/locus_tag "RAB40AL"/note >> "Ras-related protein Rab-40A-like (Ras-like GTPase). >> [Source:Uniprot/SWISSPROT;Acc:P0C0E4]"mRNA 263713..264741/gene >> "ENSG00000102128"/note "transcript_id=ENST00000218249"CDS >> 263760..264596/gene "ENSG00000102128"/protein_id >> "ENSP00000218249"/note "transcript_id=ENST00000218249"/db_xref >> "HGNC:RAB40AL"/db_xref "CCDS:CCDS35353.1"/db_xref >> "Uniprot/SWISSPROT:RB40L_HUMAN"/db_xref >> "RefSeq_peptide:NP_001027004.1"/db_xref >> "RefSeq_dna:NM_001031834"/db_xref "EntrezGene:RAB40AL"/db_xref >> "AgilentProbe:A_32_P88717"/db_xref "AgilentProbe:A_32_P88719"/db_xref >> "EMBL:BC101169"/db_xref "EMBL:BC101170"/db_xref >> "EMBL:BC101171"/db_xref "EMBL:BC101172"/db_xref >> "EMBL:Z95624"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref >> "GO:GO:0005739"/db_xref "GO:GO:0005886"/db_xref >> "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref >> "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref >> "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref >> "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40AL-001"/db_xref >> "IPI:IPI00555763.1"/db_xref "MIM_GENE:300405"/db_xref >> "UniGene:Hs.449517"/db_xref "protein_id:AAI01170.1"/db_xref >> "protein_id:AAI01171.1"/db_xref "protein_id:AAI01172.1"/db_xref >> "protein_id:AAI01173.1"/db_xref "protein_id:CAB09136.1"/db_xref >> "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref >> "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref >> "AFFY_HG_U133_Plus_2:215782_at"/db_xref >> "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref >> "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref >> "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985604"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985605"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016299"/db_xref >> "AFFY_HuGeneFL:Z95624_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref >> "Illumina_V2:ILMN_24932"/db_xref "OTTT:OTTHUMT00000057679"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057679"/db_xref >> "shares_CDS_with_OTTT:RAB40AL-001"/translation >> "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYS >> HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF >> EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN >> FNIIESFTELARIVLLRHRLNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIAL >> RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCK >> IS"gene 333902..334513/gene ENSG00000219659/locus_tag >> "LL0XNC01-73E8.1"misc_RNA 333902..334513/gene >> "ENSG00000219659"/db_xref >> "Clone_based_vega_transcript:LL0XNC01-73E8.1-001"/db_xref >> "OTTT:OTTHUMT00000057683"/note "processed_pseudogene"/note >> "transcript_id=ENST00000406951"gene complement(389101..390681)/gene >> ENSG00000133169/locus_tag "BEX1"/note "Protein BEX1 (Brain-expressed >> X-linked protein 1). >> [Source:Uniprot/SWISSPROT;Acc:Q9HBH7]"mRNA >> join(complement(390537..390681), >> complement(390083..390172),complement(389101..389720))/gene >> "ENSG00000133169"/note "transcript_id=ENST00000372728"CDS >> complement(389338..389715)/gene "ENSG00000133169"/protein_id >> "ENSP00000361813"/note "transcript_id=ENST00000372728"/db_xref >> "HGNC:BEX1"/db_xref "CCDS:CCDS35354.1"/db_xref >> "Uniprot/SWISSPROT:BEX1_HUMAN"/db_xref >> "RefSeq_peptide:NP_060946.3"/db_xref "RefSeq_dna:NM_018476"/db_xref >> "EntrezGene:BEX1"/db_xref "AgilentProbe:A_23_P159952"/db_xref >> "AgilentProbe:A_32_P168503"/db_xref "EMBL:AF183416"/db_xref >> "EMBL:AF220189"/db_xref "EMBL:AF237783"/db_xref >> "EMBL:AK290958"/db_xref "EMBL:AL008708"/db_xref >> "EMBL:AY833561"/db_xref "EMBL:BC126427"/db_xref >> "EMBL:BC126429"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0007275"/db_xref >> "GO:GO:0007399"/db_xref "GO:GO:0030154"/db_xref >> "HGNC_curated_transcript:BEX1-001"/db_xref "IPI:IPI00020533.4"/db_xref >> "MIM_GENE:300690"/db_xref "protein_id:AAF67654.1"/db_xref >> "protein_id:AAG09685.1"/db_xref "protein_id:AAG09752.1"/db_xref >> "protein_id:AAI26428.1"/db_xref "protein_id:AAI26430.1"/db_xref >> "protein_id:AAX40679.1"/db_xref "protein_id:BAF83647.1"/db_xref >> "protein_id:CAI42418.1"/db_xref "AFFY_HG_U133A:218332_at"/db_xref >> "AFFY_HG_U133A_2:218332_at"/db_xref >> "AFFY_HG_U133_Plus_2:218332_at"/db_xref >> "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985407"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985408"/db_xref >> "AFFY_U133_X3P:g8923715_3p_at"/db_xref "Codelink:GE82387"/db_xref >> "Illumina_V1:GI_15147227-S"/db_xref "Illumina_V2:ILMN_23116"/db_xref >> "OTTT:OTTHUMT00000058925"/db_xref >> "shares_CDS_with_OTTT:BEX1-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058925"/translation >> "MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYC >> VPRGNRRRFRVRQPILQYRWDMMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLS >> HSLRAVSTDPPHHDHHDEFCLMP"gene complement(395306..395427)/gene >> ENSG00000221010/locus_tag "AL008708.4"misc_RNA >> complement(395306..395427)/gene "ENSG00000221010"/db_xref >> "Clone_based_ensembl_transcri:AL008708.4-201"/note "miRNA"/note >> "transcript_id=ENST00000408083"gene complement(402265..419540)/gene >> ENSG00000147206/locus_tag "NXF3"/note "Nuclear RNA export factor 3 >> (TAP-like protein 3) >> (TAPL-3). [Source:Uniprot/SWISSPROT;Acc:Q9H4D5]"mRNA >> join(complement(419437..419535), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402682..402742), >> complement(402265..402441))/gene "ENSG00000147206"/note >> "transcript_id=ENST00000395065"CDS join(complement(419437..419464), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402731..402742))/gene >> "ENSG00000147206"/protein_id "ENSP00000378504"/note >> "transcript_id=ENST00000395065"/db_xref "CCDS:CCDS14503.1"/db_xref >> "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref >> "RefSeq_peptide:NP_071335.1"/db_xref "RefSeq_dna:NM_022052"/db_xref >> "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref >> "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref >> "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref >> "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref >> "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref >> "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003729"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0006810"/db_xref >> "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref >> "HGNC_curated_transcript:NXF3-001"/db_xref "IPI:IPI00004930.5"/db_xref >> "IPI:IPI00552760.2"/db_xref "MIM_GENE:300316"/db_xref >> "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref >> "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref >> "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref >> "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref >> "AFFY_HG_U133A:220110_s_at"/db_xref >> "AFFY_HG_U133A_2:220110_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref >> "AFFY_HG_U95E:89668_at"/db_xref >> "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref >> "Illumina_V1:GI_11545756-S"/db_xref "Illumina_V2:ILMN_19573"/db_xref >> "OTTT:OTTHUMT00000057684"/db_xref >> "shares_CDS_with_OTTT:NXF3-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057684"/translation >> "MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSS >> SHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRME >> GNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENA >> SIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQ >> EALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPG >> EKCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGS >> FFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCK >> FFKDSRNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLC >> FSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFT >> LVPTAFSSSVPAFSQEQQKMLPS"mRNA join(complement(419437..419540), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402682..402742), >> complement(402265..402441))/gene "ENSG00000147206"/note >> "transcript_id=ENST00000372709"CDS join(complement(419437..419539), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402731..402742))/gene >> "ENSG00000147206"/protein_id "ENSP00000361794"/note >> "transcript_id=ENST00000372709"/db_xref "HGNC:NXF3"/db_xref >> "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref >> "RefSeq_peptide:NP_071335.1"/db_xref >> "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref >> "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref >> "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref >> "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref >> "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref >> "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003729"/db_xref "GO:GO:0003729"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0005737"/db_xref >> "GO:GO:0006810"/db_xref "GO:GO:0016973"/db_xref >> "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref >> "HGNC_automatic_transcript:NXF3-201"/db_xref >> "IPI:IPI00004930.5"/db_xref "IPI:IPI00552760.2"/db_xref >> "IPI:IPI00872823.1"/db_xref "MIM_GENE:300316"/db_xref >> "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref >> "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref >> "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref >> "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref >> "AFFY_HG_U133A:220110_s_at"/db_xref >> "AFFY_HG_U133A_2:220110_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref >> "AFFY_HG_U95E:89668_at"/db_xref >> "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref >> "Illumina_V1:GI_11545756-S"/db_xref >> "Illumina_V2:ILMN_19573"/translation >> "LNLLQTPVPRPHRFSSREPYKDIGKMSLPSGHTTGHTDQVVQRR >> ARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRK >> GSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQN >> ECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF >> VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASL >> DVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSILELFPKLLCL >> DGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSA >> YHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDIVDSLS >> ALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSS >> SLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS"gene >> 413637..415717/gene ENSG00000217368/locus_tag >> "LL0XNC01-221F2.2"misc_RNA 413637..415717/gene >> "ENSG00000217368"/db_xref "RefSeq_dna_predicted:XR_037041"/db_xref >> "RefSeq_dna_predicted:XR_037455"/db_xref >> "RefSeq_dna_predicted:XR_039021"/db_xref >> "Clone_based_vega_transcript:LL0XNC01-221F2.2- >> 001"/db_xref "AFFY_HuEx_1_0_st_v2:3588353"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016361"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016362"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016363"/db_xref >> "AFFY_U133_X3P:Hs.195728.0.A1_3p_at"/db_xref >> "OTTT:OTTHUMT00000057692"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403064"gene complement(482560..482652)/gene >> ENSG00000200662/locus_tag "AL035494.8"misc_RNA >> complement(482560..482652)/gene "ENSG00000200662"/db_xref >> "Clone_based_ensembl_transcri:AL035494.8-201"/db_xref >> "RFAM:RF00019"/note "misc_RNA"/note >> "transcript_id=ENST00000363792"gene complement(532453..533340)/gene >> ENSG00000220705/locus_tag "RP4-635G19.1"misc_RNA >> complement(532453..533340)/gene "ENSG00000220705"/db_xref >> "Clone_based_vega_transcript:RP4-635G19.1-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:2670016"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985483"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985484"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985485"/db_xref "OTTT:OTTHUMT00000057693"/note >> "processed_pseudogene"/note "transcript_id=ENST00000402296"gene >> 541565..543636/gene ENSG00000102409/locus_tag "BEX4"/note "Protein >> BEX4 (Brain-expressed X-linked protein 4) >> (BEX1-like 1) (Nerve growth factor receptor-associated >> protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NWD9]"mRNA >> join(541565..541679,542590..543540)/gene "ENSG00000102409"/note >> "transcript_id=ENST00000372691"CDS 542595..542957/gene >> "ENSG00000102409"/protein_id "ENSP00000361776"/note >> "transcript_id=ENST00000372691"/db_xref "HGNC:BEX4"/db_xref >> "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001073894.1"/db_xref "EntrezGene:BEX4"/db_xref >> "AgilentProbe:A_24_P40551"/db_xref "AgilentProbe:A_32_P156941"/db_xref >> "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref >> "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_curated_transcript:BEX4-002"/db_xref "IPI:IPI00739732.1"/db_xref >> "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref >> "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref >> "AFFY_HG_U133A:215440_s_at"/db_xref >> "AFFY_HG_U133A_2:215440_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref >> "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016383"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref >> "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref >> "Illumina_V2:ILMN_37437"/db_xref "OTTP:59442"/db_xref >> "OTTP:OTTHUMP00000023729"/db_xref >> "OTTT:OTTHUMT00000057695"/translation >> "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ >> KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY >> MRFQTPEPDNHYDFCLIP"mRNA >> join(541565..541679,542123..542205,542590..543636)/gene >> "ENSG00000102409"/note "transcript_id=ENST00000372695"CDS >> 542595..542957/gene "ENSG00000102409"/protein_id >> "ENSP00000361780"/note "transcript_id=ENST00000372695"/db_xref >> "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001073894.1"/db_xref >> "RefSeq_dna:NM_001080425"/db_xref >> "RefSeq_dna_predicted:XM_043653"/db_xref "EntrezGene:BEX4"/db_xref >> "AgilentProbe:A_23_P114391"/db_xref "AgilentProbe:A_24_P40551"/db_xref >> "AgilentProbe:A_32_P156941"/db_xref >> "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref >> "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_curated_transcript:BEX4-001"/db_xref "IPI:IPI00739732.1"/db_xref >> "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref >> "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref >> "AFFY_HG_U133A:215440_s_at"/db_xref >> "AFFY_HG_U133A_2:215440_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref >> "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016383"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref >> "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref >> "Illumina_V2:ILMN_37437"/db_xref "OTTT:OTTHUMT00000057694"/db_xref >> "shares_CDS_with_OTTT:BEX4-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057694"/translation >> "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ >> KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY >> MRFQTPEPDNHYDFCLIP"gene complement(579439..581634)/gene >> ENSG00000180964/locus_tag "TCEAL8"/note "Transcription elongation >> factor A protein-like 8 >> (TCEA-like protein 8) (Transcription elongation factor S- >> II protein-like 8). [Source:Uniprot/SWISSPROT;Acc:Q8IYN2]"mRNA >> join(complement(581519..581634), >> complement(579439..580458))/gene "ENSG00000180964"/note >> "transcript_id=ENST00000360000"CDS complement(580067..580420)/gene >> "ENSG00000180964"/protein_id "ENSP00000353093"/note >> "transcript_id=ENST00000360000"/db_xref "HGNC:TCEAL8"/db_xref >> "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006685.1"/db_xref >> "RefSeq_peptide:NP_699164.1"/db_xref "EntrezGene:TCEAL8"/db_xref >> "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref >> "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref >> "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref >> "HGNC_curated_transcript:TCEAL8-002"/db_xref >> "IPI:IPI00217810.1"/db_xref "UniGene:Hs.612731"/db_xref >> "protein_id:AAH35573.1"/db_xref "protein_id:CAI41979.1"/db_xref >> "AFFY_HG_U133B:224819_at"/db_xref >> "AFFY_HG_U133_Plus_2:224819_at"/db_xref >> "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985503"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985505"/db_xref >> "AFFY_U133_X3P:224819_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref >> "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref >> "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057699"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057699"/db_xref >> "shares_CDS_with_OTTT:TCEAL8-002"/translation >> "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ >> EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK >> QRHSRSRPYPVCFRP"mRNA join(complement(581519..581634), >> complement(581046..581118),complement(579439..580458))/gene >> "ENSG00000180964"/note "transcript_id=ENST00000372685"CDS >> complement(580067..580420)/gene "ENSG00000180964"/protein_id >> "ENSP00000361770"/note "transcript_id=ENST00000372685"/db_xref >> "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006685.1"/db_xref >> "RefSeq_peptide:NP_699164.1"/db_xref "RefSeq_dna:NM_001006684"/db_xref >> "RefSeq_dna:NM_153333"/db_xref "EntrezGene:TCEAL8"/db_xref >> "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref >> "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref >> "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref >> "HGNC_curated_transcript:TCEAL8-001"/db_xref >> "IPI:IPI00217810.1"/db_xref "protein_id:AAH35573.1"/db_xref >> "protein_id:CAI41979.1"/db_xref "AFFY_HG_U133B:224819_at"/db_xref >> "AFFY_HG_U133_Plus_2:224819_at"/db_xref >> "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985503"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985504"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985505"/db_xref >> "AFFY_U133_X3P:224819_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref >> "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref >> "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057698"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057698"/db_xref >> "shares_CDS_with_OTTT:TCEAL8-001"/translation >> "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ >> EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK >> QRHSRSRPYPVCFRP"mRNA join(complement(580331..580420), >> complement(580100..580231))/gene "ENSG00000180964"/note >> "transcript_id=ENST00000372681"CDS join(complement(580331..580420), >> complement(580100..580231))/gene "ENSG00000180964"/protein_id >> "ENSP00000361766"/note "transcript_id=ENST00000372681"/db_xref >> "Uniprot/SPTREMBL:Q5H9L1_HUMAN"/db_xref "EMBL:Z68694"/db_xref >> "GO:GO:0003746"/db_xref "HGNC_automatic_transcript:TCEAL8-201"/db_xref >> "IPI:IPI00640443.1"/db_xref "protein_id:CAI41978.1"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985503"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985504"/translation >> "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEDTPVRHLDPEEMIR >> GVDELERLREEIRRVRNKFVMMHWKQRHSR"gene complement(585013..586022)/gene >> ENSG00000219002/locus_tag "LL0XNC01-177E8.2"misc_RNA >> join(complement(585929..586022), >> complement(585013..585759))/gene "ENSG00000219002"/db_xref >> "Clone_based_vega_transcript:LL0XNC01-177E8.2- >> 001"/db_xref "OTTT:OTTHUMT00000057697"/note >> "processed_pseudogene"/note "transcript_id=ENST00000406148"gene >> complement(600132..603313)/gene ENSG00000204065/locus_tag >> "TCEAL5"/note "Transcription elongation factor A protein-like 5 >> (TCEA-like protein 5) (Transcription elongation factor S- >> II protein-like 5). [Source:Uniprot/SWISSPROT;Acc:Q5H9L2]"mRNA >> join(complement(603114..603313), >> complement(601716..601783),complement(600132..601031))/gene >> "ENSG00000204065"/note "transcript_id=ENST00000372680"CDS >> complement(600384..601004)/gene "ENSG00000204065"/protein_id >> "ENSP00000361765"/note "transcript_id=ENST00000372680"/db_xref >> "HGNC:TCEAL5"/db_xref "CCDS:CCDS35356.1"/db_xref >> "Uniprot/SWISSPROT:TCAL5_HUMAN"/db_xref >> "RefSeq_peptide:NP_001012997.1"/db_xref >> "RefSeq_dna:NM_001012979"/db_xref >> "Uniprot/SPTREMBL:A2RUJ4_HUMAN"/db_xref "EntrezGene:TCEAL5"/db_xref >> "AgilentProbe:A_23_P62399"/db_xref "AgilentProbe:A_32_P18470"/db_xref >> "EMBL:BC132922"/db_xref "EMBL:BC132924"/db_xref >> "EMBL:CH471190"/db_xref "EMBL:Z68694"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL5-001"/db_xref >> "IPI:IPI00257932.1"/db_xref "UniGene:Hs.403462"/db_xref >> "protein_id:AAI32923.1"/db_xref "protein_id:AAI32925.1"/db_xref >> "protein_id:CAI41976.1"/db_xref "protein_id:EAW54717.1"/db_xref >> "AFFY_HG_U95E:87383_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "Codelink:GE876309"/db_xref >> "Illumina_V1:GI_29744085-S"/db_xref "Illumina_V2:ILMN_10460"/db_xref >> "OTTP:59448"/db_xref "OTTP:OTTHUMP00000023730"/db_xref >> "OTTT:OTTHUMT00000057696"/db_xref >> "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057696"/db_xref >> "shares_CDS_and_UTR_with_OTTT:TCEAL5-001"/translation >> "MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDM >> EGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRA >> AEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELR >> KKQKMGGFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV"gene >> complement(635795..637458)/gene ENSG00000133134/locus_tag >> "BEX2"/note "Protein BEX2 (Brain-expressed X-linked protein 2) >> (hBex2). [Source:Uniprot/SWISSPROT;Acc:Q9BXY8]"mRNA >> join(complement(637301..637458), >> complement(636799..636874),complement(635795..636422))/gene >> "ENSG00000133134"/note "transcript_id=ENST00000372677"CDS >> complement(636031..636417)/gene "ENSG00000133134"/protein_id >> "ENSP00000361762"/note "transcript_id=ENST00000372677"/db_xref >> "HGNC:BEX2"/db_xref "CCDS:CCDS14505.1"/db_xref >> "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref >> "RefSeq_peptide:NP_116010.1"/db_xref "RefSeq_dna:NM_032621"/db_xref >> "EntrezGene:BEX2"/db_xref "AgilentProbe:A_23_P22735"/db_xref >> "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref >> "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref >> "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-002"/db_xref >> "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref >> "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref >> "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref >> "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref >> "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref >> "AFFY_HG_U133_Plus_2:224367_at"/db_xref >> "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985510"/db_xref >> "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref >> "Illumina_V1:hmm18828-S"/db_xref "Illumina_V1:hmm36653-S"/db_xref >> "OTTT:OTTHUMT00000057702"/db_xref >> "shares_CDS_with_OTTT:BEX2-002"/db_xref >> "shares_CDS_with_OTTT:BEX2-003"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057702"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057703"/translation >> "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS >> EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK >> QLSHSLRAVSTDPPHHDHHDEFCLMP"mRNA join(complement(637337..637448), >> complement(636799..636874),complement(635943..636422))/gene >> "ENSG00000133134"/note "transcript_id=ENST00000372674"CDS >> complement(636031..636417)/gene "ENSG00000133134"/protein_id >> "ENSP00000361759"/note "transcript_id=ENST00000372674"/db_xref >> "CCDS:CCDS14505.1"/db_xref "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref >> "RefSeq_peptide:NP_116010.1"/db_xref "EntrezGene:BEX2"/db_xref >> "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref >> "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref >> "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-003"/db_xref >> "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref >> "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref >> "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref >> "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref >> "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref >> "AFFY_HG_U133_Plus_2:224367_at"/db_xref >> "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985510"/db_xref >> "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref >> "Illumina_V1:hmm18828-S"/db_xref "OTTP:59451"/db_xref >> "OTTP:OTTHUMP00000023736"/db_xref "OTTT:OTTHUMT00000057703"/db_xref >> "shares_CDS_with_ENST:ENST00000372677"/translation >> "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS >> EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK >> QLSHSLRAVSTDPPHHDHHDEFCLMP"gene 656670..658766/gene >> ENSG00000182916/locus_tag "TCEAL7"/note "Transcription elongation >> factor A protein-like 7 >> (TCEA-like protein 7) (Transcription elongation factor S- >> II protein-like 7). [Source:Uniprot/SWISSPROT;Acc:Q9BRU2]"mRNA >> join(656670..656745,657418..657481,657818..658529)/gene >> "ENSG00000182916"/note "transcript_id=ENST00000372666"CDS >> 657845..658147/gene "ENSG00000182916"/protein_id >> "ENSP00000361751"/note "transcript_id=ENST00000372666"/db_xref >> "HGNC:TCEAL7"/db_xref "CCDS:CCDS14506.1"/db_xref >> "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref >> "RefSeq_peptide:NP_689491.1"/db_xref "RefSeq_dna:NM_152278"/db_xref >> "EntrezGene:TCEAL7"/db_xref "AgilentCGH:A_14_P111438"/db_xref >> "AgilentProbe:A_23_P125788"/db_xref "AgilentProbe:A_24_P49106"/db_xref >> "EMBL:BC005988"/db_xref "EMBL:BC016786"/db_xref >> "EMBL:Z92846"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref >> "HGNC_curated_transcript:TCEAL7-002"/db_xref >> "IPI:IPI00059712.1"/db_xref "protein_id:AAH05988.2"/db_xref >> "protein_id:AAH16786.1"/db_xref "protein_id:CAI41965.1"/db_xref >> "AFFY_HG_U133B:227705_at"/db_xref >> "AFFY_HG_U133_Plus_2:227705_at"/db_xref >> "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016444"/db_xref >> "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref >> "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref >> "Illumina_V2:ILMN_13373"/db_xref "OTTP:59455"/db_xref >> "OTTP:OTTHUMP00000023738"/db_xref "OTTT:OTTHUMT00000057705"/db_xref >> "shares_CDS_with_ENST:ENST00000332431"/translation >> "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS >> LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"mRNA >> join(656678..656745,657364..657481,657818..658766)/gene >> "ENSG00000182916"/note "transcript_id=ENST00000332431"CDS >> 657845..658147/gene "ENSG00000182916"/protein_id >> "ENSP00000329794"/note "transcript_id=ENST00000332431"/db_xref >> "CCDS:CCDS14506.1"/db_xref "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref >> "RefSeq_peptide:NP_689491.1"/db_xref "EntrezGene:TCEAL7"/db_xref >> "AgilentCGH:A_14_P111438"/db_xref "AgilentProbe:A_23_P125788"/db_xref >> "AgilentProbe:A_24_P49106"/db_xref "EMBL:BC005988"/db_xref >> "EMBL:BC016786"/db_xref "EMBL:Z92846"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL7-001"/db_xref >> "IPI:IPI00059712.1"/db_xref "UniGene:Hs.602651"/db_xref >> "protein_id:AAH05988.2"/db_xref "protein_id:AAH16786.1"/db_xref >> "protein_id:CAI41965.1"/db_xref "AFFY_HG_U133B:227705_at"/db_xref >> "AFFY_HG_U133_Plus_2:227705_at"/db_xref >> "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016446"/db_xref >> "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref >> "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref >> "Illumina_V2:ILMN_13373"/db_xref "OTTT:OTTHUMT00000057704"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057704"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057705"/db_xref >> "shares_CDS_with_OTTT:TCEAL7-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL7-002"/translation >> "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS >> LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"gene >> complement(673903..674170)/gene ENSG00000215026/locus_tag >> "LL0XNC01-105G4.3"misc_RNA complement(673903..674170)/gene >> "ENSG00000215026"/db_xref "Clone_based_vega_transcript:LL0XNC01-105G4.3- >> 001"/db_xref "OTTT:OTTHUMT00000057708"/note >> "processed_pseudogene"/note "transcript_id=ENST00000399456"gene >> 682893..684892/gene ENSG00000185222/locus_tag "WBP5"/note "WW >> domain-binding protein 5 (WBP-5). >> [Source:Uniprot/SWISSPROT;Acc:Q9UHQ7]"mRNA >> join(682893..683047,684056..684892)/gene "ENSG00000185222"/note >> "transcript_id=ENST00000372656"CDS 684126..684440/gene >> "ENSG00000185222"/protein_id "ENSP00000361740"/note >> "transcript_id=ENST00000372656"/db_xref "HGNC:WBP5"/db_xref >> "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006613.1"/db_xref >> "RefSeq_peptide:NP_001006614.1"/db_xref >> "RefSeq_peptide:NP_001006615.1"/db_xref >> "RefSeq_peptide:NP_057387.1"/db_xref "EntrezGene:WBP5"/db_xref >> "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref >> "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref >> "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref >> "HGNC_curated_transcript:WBP5-002"/db_xref "IPI:IPI00008434.1"/db_xref >> "protein_id:AAF17229.1"/db_xref "protein_id:AAH23544.1"/db_xref >> "protein_id:CAD12327.1"/db_xref "AFFY_HG_Focus:217975_at"/db_xref >> "AFFY_HG_U133A:217975_at"/db_xref "AFFY_HG_U133A_2:217975_at"/db_xref >> "AFFY_HG_U133_Plus_2:217975_at"/db_xref >> "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016456"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016458"/db_xref >> "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref >> "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref >> "OTTT:OTTHUMT00000057707"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057707"/db_xref >> "shares_CDS_with_OTTT:WBP5-002"/translation >> "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT >> FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY >> LM"mRNA join(682893..683047,683524..683602,684056..684892)/gene >> "ENSG00000185222"/note "transcript_id=ENST00000372661"CDS >> 684126..684440/gene "ENSG00000185222"/protein_id >> "ENSP00000361745"/note "transcript_id=ENST00000372661"/db_xref >> "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006613.1"/db_xref >> "RefSeq_peptide:NP_001006614.1"/db_xref >> "RefSeq_peptide:NP_001006615.1"/db_xref >> "RefSeq_peptide:NP_057387.1"/db_xref "RefSeq_dna:NM_001006612"/db_xref >> "RefSeq_dna:NM_001006613"/db_xref "RefSeq_dna:NM_001006614"/db_xref >> "RefSeq_dna:NM_016303"/db_xref "EntrezGene:WBP5"/db_xref >> "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref >> "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref >> "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref >> "GO:GO:0050699"/db_xref "HGNC_curated_transcript:WBP5-001"/db_xref >> "IPI:IPI00008434.1"/db_xref "protein_id:AAF17229.1"/db_xref >> "protein_id:AAH23544.1"/db_xref "protein_id:CAD12327.1"/db_xref >> "AFFY_HG_Focus:217975_at"/db_xref "AFFY_HG_U133A:217975_at"/db_xref >> "AFFY_HG_U133A_2:217975_at"/db_xref >> "AFFY_HG_U133_Plus_2:217975_at"/db_xref >> "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016456"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016458"/db_xref >> "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref >> "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref >> "OTTT:OTTHUMT00000057706"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057706"/db_xref >> "shares_CDS_with_OTTT:WBP5-001"/translation >> "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT >> FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY >> LM"gene 702767..704518/gene ENSG00000166681/locus_tag >> "NGFRAP1"/note "Protein BEX3 (Brain-expressed X-linked protein 3) >> (p75NTR-associated cell death executor) (Nerve growth >> factor receptor-associated protein 1) (Ovarian granulosa >> cell 13.0 kDa protein HGR74). >> [Source:Uniprot/SWISSPROT;Acc:Q00994]"mRNA >> join(702767..703054,703469..703547,703904..704509)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000299872"CDS >> 703963..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000299872"/note "transcript_id=ENST00000299872"/db_xref >> "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref >> "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref >> "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref >> "HGNC_automatic_transcript:NGFRAP1-201"/db_xref >> "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "shares_CDS_with_OTTT:NGFRAP1-002"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057710"/translation >> "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR >> QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA >> join(702767..703054,703469..703547,703904..704509)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000372645"CDS >> 703933..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000361728"/note "transcript_id=ENST00000372645"/db_xref >> "HGNC:NGFRAP1"/db_xref "CCDS:CCDS14508.1"/db_xref >> "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref >> "RefSeq_peptide:NP_055195.1"/db_xref >> "RefSeq_peptide:NP_996798.1"/db_xref >> "RefSeq_peptide:NP_996800.1"/db_xref "RefSeq_dna:NM_014380"/db_xref >> "RefSeq_dna:NM_206915"/db_xref "EntrezGene:NGFRAP1"/db_xref >> "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref >> "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref >> "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref >> "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref >> "GO:GO:0005123"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref >> "GO:GO:0005829"/db_xref "GO:GO:0006915"/db_xref >> "GO:GO:0006917"/db_xref "GO:GO:0007275"/db_xref >> "GO:GO:0008625"/db_xref "GO:GO:0046872"/db_xref >> "HGNC_curated_transcript:NGFRAP1-001"/db_xref >> "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref >> "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref >> "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref >> "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref >> "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref >> "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTT:OTTHUMT00000057709"/db_xref >> "shares_CDS_with_OTTT:NGFRAP1-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057709"/translation >> "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA >> PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD >> HHDEFCLMP"mRNA join(702781..703054,703469..703547,703951..704518)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000361298"CDS >> 703963..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000354843"/note "transcript_id=ENST00000361298"/db_xref >> "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref >> "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref >> "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref >> "HGNC_curated_transcript:NGFRAP1-002"/db_xref >> "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTP:59460"/db_xref "OTTP:OTTHUMP00000023742"/db_xref >> "OTTT:OTTHUMT00000057710"/db_xref >> "shares_CDS_with_ENST:ENST00000299872"/translation >> "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR >> QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA >> join(702848..703054,703904..704501)/gene "ENSG00000166681"/note >> "transcript_id=ENST00000372635"CDS 703933..704268/gene >> "ENSG00000166681"/protein_id "ENSP00000361718"/note >> "transcript_id=ENST00000372635"/db_xref "CCDS:CCDS14508.1"/db_xref >> "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref >> "RefSeq_peptide:NP_055195.1"/db_xref >> "RefSeq_peptide:NP_996798.1"/db_xref >> "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref >> "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref >> "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref >> "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref >> "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0006915"/db_xref >> "GO:GO:0007275"/db_xref "GO:GO:0046872"/db_xref >> "HGNC_curated_transcript:NGFRAP1-003"/db_xref >> "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref >> "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref >> "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref >> "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref >> "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref >> "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTP:59461"/db_xref "OTTP:OTTHUMP00000023743"/db_xref >> "OTTT:OTTHUMT00000057711"/translation >> "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA >> PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD >> HHDEFCLMP"mRNA join(703357..703547,703951..704512)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000372634"CDS >> 703963..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000361717"/note "transcript_id=ENST00000372634"/db_xref >> "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref >> "RefSeq_dna:NM_206917"/db_xref "EntrezGene:NGFRAP1"/db_xref >> "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref >> "AgilentProbe:A_32_P27879"/db_xref >> "HGNC_curated_transcript:NGFRAP1-004"/db_xref >> "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTP:59462"/db_xref "OTTP:OTTHUMP00000023744"/db_xref >> "OTTT:OTTHUMT00000057712"/translation >> "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR >> QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"gene >> complement(826191..845930)/gene ENSG00000172476/locus_tag >> "RAB40A"/note "Ras-related protein Rab-40A (SOCS box-containing >> protein RAR2A) (Protein Rar-2). >> [Source:Uniprot/SWISSPROT;Acc:Q8WXH6]"mRNA >> complement(826191..829316)/gene "ENSG00000172476"/note >> "transcript_id=ENST00000372633"CDS complement(826364..827197)/gene >> "ENSG00000172476"/protein_id "ENSP00000361716"/note >> "transcript_id=ENST00000372633"/db_xref "HGNC:RAB40A"/db_xref >> "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref >> "RefSeq_peptide:NP_543155.2"/db_xref "RefSeq_dna:NM_080879"/db_xref >> "EntrezGene:RAB40A"/db_xref "AgilentCGH:A_14_P129520"/db_xref >> "AgilentProbe:A_23_P259912"/db_xref >> "AgilentProbe:A_32_P464296"/db_xref "AgilentProbe:A_32_P88719"/db_xref >> "EMBL:AB232637"/db_xref "EMBL:AF132748"/db_xref >> "EMBL:AF422143"/db_xref "EMBL:BC074854"/db_xref >> "EMBL:BC074855"/db_xref "EMBL:BC113501"/db_xref >> "EMBL:BC117232"/db_xref "EMBL:Z69733"/db_xref >> "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref >> "GO:GO:0005622"/db_xref "GO:GO:0005886"/db_xref >> "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref >> "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref >> "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref >> "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40A-002"/db_xref >> "IPI:IPI00514509.4"/db_xref "UniGene:Hs.27453"/db_xref >> "protein_id:AAH74854.1"/db_xref "protein_id:AAH74855.1"/db_xref >> "protein_id:AAI13502.1"/db_xref "protein_id:AAI17233.1"/db_xref >> "protein_id:AAL60514.1"/db_xref "protein_id:AAL75949.1"/db_xref >> "protein_id:BAF02899.1"/db_xref "protein_id:CAI41993.1"/db_xref >> "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref >> "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A:217589_at"/db_xref >> "AFFY_HG_U133A_2:215782_at"/db_xref >> "AFFY_HG_U133A_2:217589_at"/db_xref >> "AFFY_HG_U133_Plus_2:215782_at"/db_xref >> "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref >> "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref >> "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref >> "AFFY_HG_U95Av2:33477_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985603"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985604"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985605"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985606"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985608"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016299"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref >> "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref >> "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V1:Hs.496523-S"/db_xref >> "Illumina_V2:ILMN_123867"/db_xref "Illumina_V2:ILMN_20197"/db_xref >> "OTTP:59465"/db_xref "OTTP:OTTHUMP00000023746"/db_xref >> "OTTT:OTTHUMT00000057714"/translation >> "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS >> HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF >> EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN >> FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL >> RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI >> S"mRNA join(complement(845811..845930), >> complement(843815..843966),complement(826195..827267))/gene >> "ENSG00000172476"/note "transcript_id=ENST00000304236"CDS >> complement(826364..827197)/gene "ENSG00000172476"/protein_id >> "ENSP00000305648"/note "transcript_id=ENST00000304236"/db_xref >> "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref >> "RefSeq_peptide:NP_543155.2"/db_xref "EntrezGene:RAB40A"/db_xref >> "AgilentCGH:A_14_P129520"/db_xref "AgilentProbe:A_23_P259912"/db_xref >> "AgilentProbe:A_32_P88719"/db_xref "EMBL:AB232637"/db_xref >> "EMBL:AF132748"/db_xref "EMBL:AF422143"/db_xref >> "EMBL:BC074854"/db_xref "EMBL:BC074855"/db_xref >> "EMBL:BC113501"/db_xref "EMBL:BC117232"/db_xref >> "EMBL:Z69733"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref >> "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref >> "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref >> "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref >> "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref >> "HGNC_curated_transcript:RAB40A-001"/db_xref >> "IPI:IPI00514509.4"/db_xref "protein_id:AAH74854.1"/db_xref >> "protein_id:AAH74855.1"/db_xref "protein_id:AAI13502.1"/db_xref >> "protein_id:AAI17233.1"/db_xref "protein_id:AAL60514.1"/db_xref >> "protein_id:AAL75949.1"/db_xref "protein_id:BAF02899.1"/db_xref >> "protein_id:CAI41993.1"/db_xref "AFFY_HC_G110:107_at"/db_xref >> "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref >> "AFFY_HG_U133A:217589_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref >> "AFFY_HG_U133A_2:217589_at"/db_xref >> "AFFY_HG_U133_Plus_2:215782_at"/db_xref >> "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref >> "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref >> "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref >> "AFFY_HG_U95Av2:33477_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985603"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985604"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985605"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016299"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref >> "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref >> "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V2:ILMN_20197"/db_xref >> "OTTP:59464"/db_xref "OTTP:OTTHUMP00000023745"/db_xref >> "OTTT:OTTHUMT00000057713"/db_xref >> "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057713"/db_xref >> "shares_CDS_and_UTR_with_OTTT:RAB40A-001"/translation >> "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS >> HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF >> EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN >> FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL >> RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI >> S"gene 902911..914166/gene ENSG00000133142/locus_tag "TCEAL4"/note >> "Transcription elongation factor A protein-like 4 >> (TCEA-like protein 4) (Transcription elongation factor S- >> II protein-like 4). [Source:Uniprot/SWISSPROT;Acc:Q96EI5]"mRNA >> join(902911..902973,903535..903654,912066..912201, >> 912660..912742,913090..913956)/gene "ENSG00000133142"/note >> "transcript_id=ENST00000372629"CDS >> join(902911..902973,903535..903654,912066..912201, >> 912660..912742,913090..913764)/gene >> "ENSG00000133142"/protein_id "ENSP00000361712"/note >> "transcript_id=ENST00000372629"/db_xref "HGNC:TCEAL4"/db_xref >> "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006936.1"/db_xref >> "RefSeq_peptide:NP_001006937.1"/db_xref >> "RefSeq_peptide:NP_001006938.1"/db_xref >> "RefSeq_peptide:NP_079139.4"/db_xref >> "Uniprot/Varsplic:Q96EI5-2"/db_xref "EntrezGene:TCEAL4"/db_xref >> "AgilentCGH:A_14_P118508"/db_xref "AgilentCGH:A_14_P128392"/db_xref >> "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref >> "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref >> "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL4-001"/db_xref >> "IPI:IPI00647163.1"/db_xref "IPI:IPI00657999.3"/db_xref >> "protein_id:AAG44794.1"/db_xref "protein_id:AAH12296.1"/db_xref >> "protein_id:AAL40909.1"/db_xref "protein_id:BAB15023.1"/db_xref >> "protein_id:CAI42031.1"/db_xref "AFFY_HG_U133A:202371_at"/db_xref >> "AFFY_HG_U133A_2:202371_at"/db_xref >> "AFFY_HG_U133_Plus_2:202371_at"/db_xref >> "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016542"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016545"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016547"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016548"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016549"/db_xref >> "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref >> "Illumina_V1:GI_21361595-S"/db_xref "Illumina_V2:ILMN_15986"/db_xref >> "Illumina_V2:ILMN_1896"/db_xref "OTTT:OTTHUMT00000252336"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000252336"/db_xref >> "shares_CDS_with_OTTT:TCEAL4-001"/translation >> "MPAGGQAPQLTPVIPAFWEARGLPNSKGRDKVHICQCEEWKGHI >> SYVERDITTSEIKSLPQVSVRAFHAASGTLEWRKGNGYGRGKGWGWGRVESREAGPSV >> DRDGGLRVCCSQRSAKPEKEEQPVQNPRRSVKDRKRRGNLDMEKLYSENEGMASNQGK >> MENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGK >> SEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKG >> LAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFY >> PRGPREFRGGCRAPRRDIEDIPYV"mRNA >> join(911932..912065,912660..912732,913090..914166)/gene >> "ENSG00000133142"/note "transcript_id=ENST00000395036"CDS >> 913117..913764/gene "ENSG00000133142"/protein_id >> "ENSP00000378477"/note "transcript_id=ENST00000395036"/db_xref >> "CCDS:CCDS14510.2"/db_xref "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006936.1"/db_xref >> "RefSeq_peptide:NP_001006937.1"/db_xref >> "RefSeq_peptide:NP_001006938.1"/db_xref >> "RefSeq_peptide:NP_079139.4"/db_xref "RefSeq_dna:NM_001006935"/db_xref >> "RefSeq_dna:NM_001006937"/db_xref "RefSeq_dna:NM_024863"/db_xref >> "EntrezGene:TCEAL4"/db_xref "AgilentCGH:A_14_P128392"/db_xref >> "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref >> "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref >> "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL4-201"/db_xref >> "IPI:IPI00657999.3"/db_xref "protein_id:AAG44794.1"/db_xref >> "protein_id:AAH12296.1"/db_xref "protein_id:AAL40909.1"/db_xref >> "protein_id:BAB15023.1"/db_xref "protein_id:CAI42031.1"/db_xref >> "AFFY_HG_U133A:202371_at"/db_xref "AFFY_HG_U133A_2:202371_at"/db_xref >> "AFFY_HG_U133_Plus_2:202371_at"/db_xref >> "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016538"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016540"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016541"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016545"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016547"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016548"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016549"/db_xref >> "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref >> "Illumina_V1:GI_21361595-S"/db_xref >> "Illumina_V2:ILMN_1896"/translation >> "MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENE >> GKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPES >> EGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFD >> NMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV"gene >> 933892..936368/gene ENSG00000196507/locus_tag "TCEAL3"/note >> "Transcription elongation factor A protein-like 3 >> (TCEA-like protein 3) (Transcription elongation factor S- >> II protein-like 3). [Source:Uniprot/SWISSPROT;Acc:Q969E4]"mRNA >> join(933892..934157,935045..935114,935484..936368)/gene >> "ENSG00000196507"/note "transcript_id=ENST00000372628"CDS >> 935506..936108/gene "ENSG00000196507"/protein_id >> "ENSP00000361711"/note "transcript_id=ENST00000372628"/db_xref >> "HGNC:TCEAL3"/db_xref "CCDS:CCDS14511.1"/db_xref >> "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref >> "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006934.1"/db_xref >> "RefSeq_peptide:NP_116315.1"/db_xref "RefSeq_dna:NM_001006933"/db_xref >> "RefSeq_dna:NM_032926"/db_xref >> "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref >> "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref >> "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref >> "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref >> "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-002"/db_xref >> "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref >> "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref >> "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref >> "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref >> "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref >> "AFFY_HG_U133B:227279_at"/db_xref >> "AFFY_HG_U133_Plus_2:227279_at"/db_xref >> "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref >> "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref >> "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref >> "OTTP:59471"/db_xref "OTTP:OTTHUMP00000023758"/db_xref >> "OTTT:OTTHUMT00000057737"/db_xref >> "shares_CDS_with_ENST:ENST00000243286"/db_xref >> "shares_CDS_with_ENST:ENST00000372627"/translation >> "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC >> EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA >> EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG >> GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA >> join(934347..934511,935045..935114,935479..936367)/gene >> "ENSG00000196507"/note "transcript_id=ENST00000243286"CDS >> 935506..936108/gene "ENSG00000196507"/protein_id >> "ENSP00000243286"/note "transcript_id=ENST00000243286"/db_xref >> "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref >> "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006934.1"/db_xref >> "RefSeq_peptide:NP_116315.1"/db_xref >> "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref >> "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref >> "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref >> "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref >> "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL3-201"/db_xref >> "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref >> "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref >> "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref >> "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref >> "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref >> "AFFY_HG_U133B:227279_at"/db_xref >> "AFFY_HG_U133_Plus_2:227279_at"/db_xref >> "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref >> "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref >> "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-002"/translation >> "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC >> EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA >> EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG >> GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA >> join(934406..934499,935045..935114,935479..936367)/gene >> "ENSG00000196507"/note "transcript_id=ENST00000372627"CDS >> 935506..936108/gene "ENSG00000196507"/protein_id >> "ENSP00000361710"/note "transcript_id=ENST00000372627"/db_xref >> "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref >> "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006934.1"/db_xref >> "RefSeq_peptide:NP_116315.1"/db_xref >> "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref >> "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref >> "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref >> "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref >> "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-001"/db_xref >> "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref >> "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref >> "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref >> "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref >> "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref >> "AFFY_HG_U133B:227279_at"/db_xref >> "AFFY_HG_U133_Plus_2:227279_at"/db_xref >> "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref >> "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref >> "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref >> "OTTT:OTTHUMT00000057736"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-002"/translation >> "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC >> EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA >> EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG >> GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"gene 955161..957387/gene >> ENSG00000172465/locus_tag "TCEAL1"/note "transcription elongation >> factor A (SII)-like 1 >> [Source:RefSeq_peptide;Acc:NP_001006641]"mRNA >> join(955161..955234,955935..956002,956326..957387)/gene >> "ENSG00000172465"/note "transcript_id=ENST00000372626"CDS >> 956358..956837/gene "ENSG00000172465"/protein_id >> "ENSP00000361709"/note "transcript_id=ENST00000372626"/db_xref >> "HGNC:TCEAL1"/db_xref "CCDS:CCDS35358.1"/db_xref >> "RefSeq_peptide:NP_001006640.1"/db_xref >> "RefSeq_peptide:NP_001006641.1"/db_xref >> "RefSeq_peptide:NP_004771.2"/db_xref "RefSeq_dna:NM_001006639"/db_xref >> "RefSeq_dna:NM_001006640"/db_xref "RefSeq_dna:NM_004780"/db_xref >> "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref >> "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref >> "AgilentProbe:A_32_P498070"/db_xref "GO:GO:0005515"/db_xref >> "HGNC_curated_transcript:TCEAL1-001"/db_xref >> "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref >> "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref >> "AFFY_HG_U133A_2:204045_at"/db_xref >> "AFFY_HG_U133_Plus_2:204045_at"/db_xref >> "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016567"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016569"/db_xref >> "AFFY_HuGeneFL:M99701_at"/db_xref >> "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref >> "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref >> "Illumina_V2:ILMN_23088"/db_xref "Illumina_V2:ILMN_28868"/db_xref >> "OTTT:OTTHUMT00000058903"/db_xref "OTTT:OTTHUMT00000058904"/db_xref >> "OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-002"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-003"/translation >> "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS >> EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF >> KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA >> join(955405..955466,955935..956002,956326..957387)/gene >> "ENSG00000172465"/note "transcript_id=ENST00000372624"CDS >> 956358..956837/gene "ENSG00000172465"/protein_id >> "ENSP00000361707"/note "transcript_id=ENST00000372624"/db_xref >> "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref >> "RefSeq_peptide:NP_001006641.1"/db_xref >> "RefSeq_peptide:NP_004771.2"/db_xref >> "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref >> "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref >> "AgilentProbe:A_32_P498070"/db_xref >> "HGNC_automatic_transcript:TCEAL1-201"/db_xref >> "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref >> "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref >> "AFFY_HG_U133A_2:204045_at"/db_xref >> "AFFY_HG_U133_Plus_2:204045_at"/db_xref >> "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016567"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016569"/db_xref >> "AFFY_HuGeneFL:M99701_at"/db_xref >> "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref >> "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref >> "Illumina_V2:ILMN_23088"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-002"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-003"/translation >> "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS >> EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF >> KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA >> join(955405..955466,955935..956014,956326..957387)/gene >> "ENSG00000172465"/note "transcript_id=ENST00000372625"CDS >> 956358..956837/gene "ENSG00000172465"/protein_id >> "ENSP00000361708"/note "transcript_id=ENST00000372625"/db_xref >> "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref >> "RefSeq_peptide:NP_001006641.1"/db_xref >> "RefSeq_peptide:NP_004771.2"/db_xref >> "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref >> "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref >> "HGNC_automatic_transcript:TCEAL1-202"/db_xref >> "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref >> "UniGene:Hs.95243"/db_xref "AFFY_HG_Focus:204045_at"/db_xref >> "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref >> "AFFY_HG_U133_Plus_2:204045_at"/db_xref >> "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016567"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016569"/db_xref >> "AFFY_HuGeneFL:M99701_at"/db_xref >> "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref >> "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref >> "Illumina_V2:ILMN_23088"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-002"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-003"/translation >> "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS >> EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF >> KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"gene >> complement(978174..978547)/gene ENSG00000180284/locus_tag >> "AL049610.9"misc_RNA join(complement(978422..978547), >> complement(978174..978419))/gene "ENSG00000180284"/db_xref >> "AgilentProbe:A_24_P349428"/db_xref >> "Clone_based_ensembl_transcri:AL049610.9-201"/db_xref >> "UniGene:Hs.712229"/note "pseudogene"/note >> "transcript_id=ENST00000312731"exon complement(5148..5254)/note >> "exon_id=ENSE00001396941"exon 32225..32681/note >> "exon_id=ENSE00001553787"exon 40223..40290/note >> "exon_id=ENSE00001318862"exon 39571..39658/note >> "exon_id=ENSE00001520517"exon 38853..38993/note >> "exon_id=ENSE00001520520"exon 40978..44173/note >> "exon_id=ENSE00001435544"exon 40630..40707/note >> "exon_id=ENSE00001296863"exon 38617..38993/note >> "exon_id=ENSE00001322878"exon 74258..74352/note >> "exon_id=ENSE00001458492"exon 47398..47532/note >> "exon_id=ENSE00001359890"exon 75140..79981/note >> "exon_id=ENSE00001458491"exon 72535..72615/note >> "exon_id=ENSE00001038238"exon 74026..74137/note >> "exon_id=ENSE00001458493"exon 47167..47262/note >> "exon_id=ENSE00001359898"exon 75140..78879/note >> "exon_id=ENSE00001458499"exon 99642..99712/note >> "exon_id=ENSE00001501273"exon 112108..113045/note >> "exon_id=ENSE00001559133"exon 113050..113109/note >> "exon_id=ENSE00001501266"exon 113185..113253/note >> "exon_id=ENSE00001501264"exon 113254..113638/note >> "exon_id=ENSE00001547725"exon 114269..114828/note >> "exon_id=ENSE00001549427"exon 123275..123510/note >> "exon_id=ENSE00001559090"exon 122692..122931/note >> "exon_id=ENSE00001563701"exon complement(123532..123603)/note >> "exon_id=ENSE00001501262"exon 123970..124556/note >> "exon_id=ENSE00001557597"exon 124837..125403/note >> "exon_id=ENSE00001550417"exon 125910..126001/note >> "exon_id=ENSE00001552084"exon 126004..126327/note >> "exon_id=ENSE00001549044"exon 126383..127532/note >> "exon_id=ENSE00001556456"exon 127754..127840/note >> "exon_id=ENSE00001562374"exon 127842..127907/note >> "exon_id=ENSE00001501259"exon 129354..129411/note >> "exon_id=ENSE00001501257"exon 129412..129481/note >> "exon_id=ENSE00001501248"exon 129482..129726/note >> "exon_id=ENSE00001554809"exon 131073..132579/note >> "exon_id=ENSE00001556308"exon complement(132605..133087)/note >> "exon_id=ENSE00001553181"exon 133182..134268/note >> "exon_id=ENSE00001547959"exon complement(134334..134386)/note >> "exon_id=ENSE00001501243"exon 135559..135629/note >> "exon_id=ENSE00001501240"exon 136559..136627/note >> "exon_id=ENSE00001501235"exon 263713..264741/note >> "exon_id=ENSE00000675363"exon 333902..334513/note >> "exon_id=ENSE00001556141"exon complement(389101..389720)/note >> "exon_id=ENSE00001458479"exon complement(390537..390681)/note >> "exon_id=ENSE00001105457"exon complement(390083..390172)/note >> "exon_id=ENSE00001105455"exon complement(395306..395427)/note >> "exon_id=ENSE00001564718"exon complement(419437..419535)/note >> "exon_id=ENSE00001458464"exon complement(409839..409943)/note >> "exon_id=ENSE00001322720"exon complement(404055..404187)/note >> "exon_id=ENSE00001302178"exon complement(406454..406509)/note >> "exon_id=ENSE00001293836"exon complement(402265..402441)/note >> "exon_id=ENSE00001458442"exon complement(406025..406083)/note >> "exon_id=ENSE00001314340"exon complement(405800..405915)/note >> "exon_id=ENSE00001325188"exon complement(406204..406311)/note >> "exon_id=ENSE00001313270"exon complement(410050..410133)/note >> "exon_id=ENSE00001303810"exon complement(411156..411324)/note >> "exon_id=ENSE00001327556"exon complement(419437..419540)/note >> "exon_id=ENSE00001520502"exon complement(407017..407053)/note >> "exon_id=ENSE00001322569"exon complement(409445..409514)/note >> "exon_id=ENSE00001308091"exon complement(405001..405073)/note >> "exon_id=ENSE00001293474"exon complement(406589..406657)/note >> "exon_id=ENSE00001301210"exon complement(402682..402742)/note >> "exon_id=ENSE00001327914"exon complement(409201..409289)/note >> "exon_id=ENSE00001292623"exon complement(409634..409714)/note >> "exon_id=ENSE00001291407"exon complement(410783..410936)/note >> "exon_id=ENSE00001311406"exon complement(408696..408805)/note >> "exon_id=ENSE00001309255"exon complement(405662..405704)/note >> "exon_id=ENSE00000979224"exon 413637..415717/note >> "exon_id=ENSE00001547073"exon complement(482560..482652)/note >> "exon_id=ENSE00001438555"exon complement(532453..533340)/note >> "exon_id=ENSE00001554209"exon 542590..543636/note >> "exon_id=ENSE00001458417"exon 542123..542205/note >> "exon_id=ENSE00000674092"exon 541565..541679/note >> "exon_id=ENSE00001458401"exon 542590..543540/note >> "exon_id=ENSE00001458400"exon complement(581519..581634)/note >> "exon_id=ENSE00001520463"exon complement(579439..580458)/note >> "exon_id=ENSE00001419203"exon complement(581046..581118)/note >> "exon_id=ENSE00001263715"exon complement(580331..580420)/note >> "exon_id=ENSE00001458382"exon complement(580100..580231)/note >> "exon_id=ENSE00001458381"exon complement(585013..585759)/note >> "exon_id=ENSE00001558162"exon complement(585929..586022)/note >> "exon_id=ENSE00001556744"exon complement(600132..601031)/note >> "exon_id=ENSE00001458378"exon complement(601716..601783)/note >> "exon_id=ENSE00001458379"exon complement(603114..603313)/note >> "exon_id=ENSE00001458380"exon complement(637301..637458)/note >> "exon_id=ENSE00001458422"exon complement(637337..637448)/note >> "exon_id=ENSE00001458367"exon complement(635795..636422)/note >> "exon_id=ENSE00001458371"exon complement(636799..636874)/note >> "exon_id=ENSE00001038555"exon complement(635943..636422)/note >> "exon_id=ENSE00001458366"exon 657818..658766/note >> "exon_id=ENSE00001325535"exon 657818..658529/note >> "exon_id=ENSE00001458343"exon 657364..657481/note >> "exon_id=ENSE00001305966"exon 657418..657481/note >> "exon_id=ENSE00001458345"exon 656670..656745/note >> "exon_id=ENSE00001458347"exon 656678..656745/note >> "exon_id=ENSE00001291638"exon complement(673903..674170)/note >> "exon_id=ENSE00001538428"exon 683524..683602/note >> "exon_id=ENSE00001318428"exon 682893..683047/note >> "exon_id=ENSE00001292620"exon 684056..684892/note >> "exon_id=ENSE00001458330"exon 703951..704512/note >> "exon_id=ENSE00001436496"exon 703357..703547/note >> "exon_id=ENSE00001458275"exon 702848..703054/note >> "exon_id=ENSE00001458277"exon 702781..703054/note >> "exon_id=ENSE00001375610"exon 703951..704518/note >> "exon_id=ENSE00001458290"exon 702767..703054/note >> "exon_id=ENSE00001458297"exon 703469..703547/note >> "exon_id=ENSE00001416044"exon 703904..704501/note >> "exon_id=ENSE00001458276"exon 703904..704509/note >> "exon_id=ENSE00001105579"exon complement(826191..829316)/note >> "exon_id=ENSE00001458270"exon complement(845811..845930)/note >> "exon_id=ENSE00001183586"exon complement(826195..827267)/note >> "exon_id=ENSE00001173849"exon complement(843815..843966)/note >> "exon_id=ENSE00001183584"exon 903535..903654/note >> "exon_id=ENSE00001183544"exon 911932..912065/note >> "exon_id=ENSE00001520388"exon 913090..913956/note >> "exon_id=ENSE00001458264"exon 912660..912732/note >> "exon_id=ENSE00001520387"exon 913090..914166/note >> "exon_id=ENSE00001520386"exon 912660..912742/note >> "exon_id=ENSE00001183536"exon 902911..902973/note >> "exon_id=ENSE00001458265"exon 912066..912201/note >> "exon_id=ENSE00001183538"exon 933892..934157/note >> "exon_id=ENSE00001458260"exon 935484..936368/note >> "exon_id=ENSE00001458259"exon 935479..936367/note >> "exon_id=ENSE00000840307"exon 934406..934499/note >> "exon_id=ENSE00001253340"exon 935045..935114/note >> "exon_id=ENSE00001253332"exon 934347..934511/note >> "exon_id=ENSE00001458257"exon 955405..955466/note >> "exon_id=ENSE00001458249"exon 955161..955234/note >> "exon_id=ENSE00001458252"exon 956326..957387/note >> "exon_id=ENSE00001458247"exon 955935..956002/note >> "exon_id=ENSE00001406936"exon 955935..956014/note >> "exon_id=ENSE00001458248"exon complement(978174..978419)/note >> "exon_id=ENSE00001250433"exon complement(978422..978547)/note >> "exon_id=ENSE00001250442"STS complement(22038..22346)/standard_name >> "SHGC-143390"/db_xref "UniSTS_NUM:185057"/db_xref >> "UniSTS:SHGC-143390"/note "map_weight=1"STS >> complement(43711..43868)/standard_name "RH78520"/db_xref >> "UniSTS_NUM:73812"/db_xref "UniSTS:RH78520"/db_xref >> "GM99-GB4:stSG41780"/note "map_weight=1"STS >> complement(49890..50031)/standard_name "A008N06"/db_xref >> "UniSTS_NUM:69104"/db_xref "UniSTS:A008N06"/note "map_weight=1"STS >> complement(78623..78780)/standard_name "DXS7007E"/db_xref >> "UniSTS_NUM:87907"/db_xref "UniSTS:DXS7007E"/db_xref >> "WUSTL-X:sWXD2417"/note "map_weight=1"STS >> complement(126684..126809)/standard_name "DXS7692"/db_xref >> "UniSTS_NUM:22137"/db_xref "UniSTS:L41751"/db_xref >> "UniSTS:DXS7692"/db_xref "WUSTL-X:sWXD1549"/note "map_weight=1"STS >> complement(126736..126835)/standard_name "L47999"/db_xref >> "UniSTS_NUM:32118"/db_xref "UniSTS:L47999"/db_xref >> "WUSTL-X:sWXD1440"/note "map_weight=1"STS >> complement(211742..211821)/standard_name "RH93084"/db_xref >> "UniSTS_NUM:88543"/db_xref "UniSTS:RH93084"/db_xref >> "GM99-GB4:stSG48268"/note "map_weight=1"STS >> complement(238085..238337)/standard_name "REN69440"/db_xref >> "UniSTS_NUM:394240"/db_xref "UniSTS:REN69440"/note "map_weight=3"STS >> complement(265241..265340)/standard_name "WI-16593"/db_xref >> "UniSTS_NUM:77493"/db_xref "UniSTS:T40480"/db_xref >> "UniSTS:WI-16593"/note "map_weight=1"STS >> complement(290665..290925)/standard_name "STS-N47340"/db_xref >> "UniSTS_NUM:24198"/db_xref "UniSTS:STS-N47340"/note >> "map_weight=1"STS complement(290723..290889)/standard_name >> "RH45776"/db_xref "UniSTS_NUM:47099"/db_xref >> "UniSTS:RH45776"/db_xref "GM99-GB4:stSG21435"/note "map_weight=1"STS >> complement(331700..331780)/standard_name "L77850"/db_xref >> "UniSTS_NUM:53608"/db_xref "UniSTS:L77850"/db_xref >> "WUSTL-X:sWXD2841"/note "map_weight=1"STS >> complement(389114..389226)/standard_name "RH18267"/db_xref >> "UniSTS_NUM:60599"/db_xref "UniSTS:RH18267"/db_xref >> "GM99-GB4:stSG9586"/note "map_weight=1"STS >> complement(402304..402528)/standard_name "RH79750"/db_xref >> "UniSTS_NUM:88517"/db_xref "UniSTS:RH79750"/db_xref >> "GM99-GB4:sts-AA010600"/note "map_weight=1"STS >> complement(402365..402517)/standard_name "RH102997"/db_xref >> "UniSTS_NUM:97331"/db_xref "UniSTS:RH102997"/db_xref >> "GM99-GB4:stSG54822"/note "map_weight=1"STS >> complement(429978..430117)/standard_name "DXS8350"/db_xref >> "UniSTS_NUM:80166"/db_xref "UniSTS:DXS8350"/db_xref >> "UniSTS:L41954"/db_xref "WUSTL-X:sWXD1283"/note "map_weight=1"STS >> complement(451418..451578)/standard_name "L77848"/db_xref >> "UniSTS_NUM:23678"/db_xref "UniSTS:L77848"/db_xref >> "WUSTL-X:sWXD2804"/note "map_weight=1"STS >> complement(513264..513554)/standard_name "GDB:315297"/db_xref >> "UniSTS_NUM:156514"/db_xref "UniSTS:GDB:315297"/note >> "map_weight=1"STS complement(543431..543624)/standard_name >> "RH80982"/db_xref "UniSTS_NUM:92748"/db_xref >> "UniSTS:RH80982"/db_xref "GM99-GB4:sts-T59331"/note >> "map_weight=1"STS complement(543471..543550)/standard_name >> "RH46879"/db_xref "UniSTS_NUM:24442"/db_xref >> "UniSTS:RH46879"/db_xref "GM99-GB4:stSG25760"/note "map_weight=1"STS >> complement(579449..579628)/standard_name "RH35755"/db_xref >> "UniSTS_NUM:71842"/db_xref "UniSTS:RH35755"/db_xref >> "GM99-GB4:stSG1764"/note "map_weight=1"STS >> complement(579510..579715)/standard_name "A002R41"/db_xref >> "UniSTS_NUM:5253"/db_xref "UniSTS:A002R41"/note "map_weight=1"STS >> complement(579804..579931)/standard_name "STS-R85811"/db_xref >> "UniSTS_NUM:50348"/db_xref "UniSTS:STS-R85811"/note >> "map_weight=1"STS complement(635821..635946)/standard_name >> "WI-15922"/db_xref "UniSTS_NUM:62839"/db_xref >> "UniSTS:WI-15922"/db_xref "UniSTS:G23964"/db_xref >> "UniSTS:R43117"/note "map_weight=1"STS >> complement(649415..649545)/standard_name "G22062"/db_xref >> "UniSTS_NUM:66864"/db_xref "UniSTS:G22062"/note "map_weight=1"STS >> complement(658543..658670)/standard_name "RH12449"/db_xref >> "UniSTS_NUM:76451"/db_xref "UniSTS:RH12449"/db_xref >> "GM99-GB4:stSG3774"/note "map_weight=1"STS >> complement(684688..684818)/standard_name "A006A03"/db_xref >> "UniSTS_NUM:41216"/db_xref "UniSTS:A006A03"/note "map_weight=1"STS >> complement(684688..684818)/standard_name "G20641"/db_xref >> "UniSTS_NUM:41217"/db_xref "UniSTS:G20641"/note "map_weight=1"STS >> complement(703954..704452)/standard_name "141173"/db_xref >> "UniSTS_NUM:141173"/note "map_weight=1"STS >> complement(704257..704403)/standard_name "DXS6984E"/db_xref >> "UniSTS_NUM:2498"/db_xref "UniSTS:DXS6984E"/db_xref >> "GM99-GB4:stSG2932"/note "map_weight=1"STS >> complement(704291..704471)/standard_name "STS-M38188"/db_xref >> "UniSTS_NUM:60882"/db_xref "UniSTS:STS-M38188"/note >> "map_weight=1"STS complement(704352..704489)/standard_name >> "D5S2593"/db_xref "UniSTS_NUM:32572"/db_xref >> "UniSTS:D5S2593"/db_xref "UniSTS:G13550"/note "map_weight=1"STS >> complement(732457..732578)/standard_name "AL035140"/db_xref >> "UniSTS_NUM:94651"/db_xref "UniSTS:AL035140"/note "map_weight=1"STS >> complement(754777..754899)/standard_name "AL035146"/db_xref >> "UniSTS_NUM:94658"/db_xref "UniSTS:AL035146"/note "map_weight=1"STS >> complement(792227..792346)/standard_name "AF020181"/db_xref >> "UniSTS_NUM:39479"/db_xref "UniSTS:AF020181"/db_xref >> "WUSTL-X:sWXD3585"/note "map_weight=1"STS >> complement(796966..797049)/standard_name "L77845"/db_xref >> "UniSTS_NUM:57902"/db_xref "UniSTS:L77845"/db_xref >> "WUSTL-X:sWXD2783"/note "map_weight=1"STS >> complement(803577..803776)/standard_name "DXS1106"/db_xref >> "UniSTS_NUM:30651"/db_xref "UniSTS:DXS1106"/db_xref >> "GM99-GB4:AFM263we1"/db_xref "TNG:SHGC-1092"/note "map_weight=1"STS >> complement(803580..803758)/standard_name "DXS1106"/db_xref >> "UniSTS_NUM:63232"/db_xref "UniSTS:Z17276"/db_xref >> "UniSTS:DXS1106"/db_xref "Genethon:AFM263we1"/db_xref >> "WUSTL-X:sWXD672"/note "map_weight=1"STS >> complement(804260..804395)/standard_name "AF020152"/db_xref >> "UniSTS_NUM:45420"/db_xref "UniSTS:AF020152"/db_xref >> "WUSTL-X:sWXD3586"/note "map_weight=1"STS >> complement(853592..853826)/standard_name "DXS8096"/db_xref >> "UniSTS_NUM:21236"/db_xref "UniSTS:DXS8096"/db_xref >> "UniSTS:Z51652"/db_xref "GM99-G3:AFMa051tc5"/db_xref >> "SHGC-G3:SHGC-21230"/note "map_weight=1"STS >> complement(853592..853864)/standard_name "SHGC-150960"/db_xref >> "UniSTS_NUM:173428"/db_xref "UniSTS:SHGC-150960"/note >> "map_weight=1"STS complement(906210..906384)/standard_name >> "AL008935"/db_xref "UniSTS_NUM:79896"/db_xref "UniSTS:AL008935"/note >> "map_weight=1"STS complement(914019..914122)/standard_name >> "STS-W88790"/db_xref "UniSTS_NUM:82788"/db_xref >> "UniSTS:STS-W88790"/note "map_weight=1"STS >> complement(914808..914927)/standard_name "SHGC-52701"/db_xref >> "UniSTS_NUM:11495"/db_xref "UniSTS:SHGC-52701"/db_xref >> "UniSTS:G36701"/note "map_weight=1"STS >> complement(916610..916774)/standard_name "RH45868"/db_xref >> "UniSTS_NUM:63171"/db_xref "UniSTS:RH45868"/db_xref >> "GM99-GB4:stSG21595"/note "map_weight=1"STS >> complement(936075..936201)/standard_name "RH78743"/db_xref >> "UniSTS_NUM:4877"/db_xref "UniSTS:RH78743"/db_xref >> "GM99-GB4:stSG42368"/note "map_weight=2"STS >> complement(936198..936325)/standard_name "SHGC-34973"/db_xref >> "UniSTS_NUM:23617"/db_xref "UniSTS:SHGC-34973"/db_xref >> "UniSTS:G29704"/note "map_weight=1"STS >> complement(939033..939162)/standard_name "RH17462"/db_xref >> "UniSTS_NUM:41304"/db_xref "UniSTS:H03933"/db_xref >> "UniSTS:RH17462"/note "map_weight=1"STS >> complement(939050..939161)/standard_name "A005E02"/db_xref >> "UniSTS_NUM:56778"/db_xref "UniSTS:G26235"/db_xref >> "UniSTS:R62801"/db_xref "UniSTS:A005E02"/db_xref >> "WI-RH:TIGR-A005E02"/note "map_weight=1"STS >> complement(956876..956996)/standard_name "STS-M99701"/db_xref >> "UniSTS_NUM:21153"/db_xref "UniSTS:STS-M99701"/note >> "map_weight=1"STS complement(957185..957362)/standard_name >> "RH80258"/db_xref "UniSTS_NUM:91622"/db_xref >> "UniSTS:RH80258"/db_xref "GM99-GB4:sts-AA040895"/note >> "map_weight=1"misc_feature 1..109496/note "contig >> AL035427.17.1.161273 51778..161273(1)"misc_feature 109497..189301/note >> "contig AL590407.8.1.81805 2001..81805(1)"misc_feature >> 189302..225201/note "contig Z68871.2.1.37899 1..35900(-1)"misc_feature >> 225202..230371/note "contig AL669904.1.1.5270 >> 101..5270(1)"misc_feature 230372..267593/note "contig >> Z95624.1.1.37322 1..37222(-1)"misc_feature 267594..267689/note >> "contig AL645812.1.1.195 100..195(1)"misc_feature 267690..282719/note >> "contig Z93943.1.1.15130 1..15030(-1)"misc_feature >> 282720..327653/note "contig Z75895.1.1.45038 1..44934(-1)"misc_feature >> 327654..365457/note "contig Z73361.1.1.40509 >> 1..37804(-1)"misc_feature 365458..401071/note "contig >> AL008708.4.1.35714 101..35714(1)"misc_feature 401072..438735/note >> "contig Z75746.1.1.37764 1..37664(-1)"misc_feature 438736..478402/note >> "contig Z85997.1.1.40600 1..39667(-1)"misc_feature >> 478403..547950/note "contig AL035494.8.1.69648 >> 101..69648(1)"misc_feature 547951..564664/note "contig >> Z81014.1.1.16814 1..16714(-1)"misc_feature 564665..605385/note >> "contig Z68694.1.1.40822 1..40721(-1)"misc_feature 605386..645869/note >> "contig AL133348.8.1.40584 101..40584(1)"misc_feature >> 645870..689721/note "contig Z92846.2.1.43952 >> 101..43952(1)"misc_feature 689722..749434/note "contig >> AL606763.6.1.61713 2001..61713(1)"misc_feature 749435..754942/note >> "contig AL079333.8.1.7508 2001..7508(1)"misc_feature >> 754943..807439/note "contig AL117327.5.1.52597 >> 101..52597(1)"misc_feature 807440..848370/note "contig >> Z69733.1.1.41031 1..40931(-1)"misc_feature 848371..875749/note >> "contig AL035444.9.1.27479 101..27479(1)"misc_feature >> 875750..897175/note "contig AL021308.1.1.21526 >> 101..21526(1)"misc_feature 897176..939757/note "contig >> Z73965.1.1.42686 1..42582(-1)"misc_feature 939758..944624/note >> "contig Z68327.1.1.4968 1..4867(-1)"misc_feature 944625..1000000/note >> "contig AL049610.9.1.100269 99..55474(1)" >> Stack trace follows .... >> >> >> at >> org.biojavax.bio.seq.io.GenbankFormat.readRichSequence(GenbankFormat.java:462) >> at >> org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) >> ... 1 more >> >> >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> >> >> > > > > From holland at eaglegenomics.com Sat Nov 15 15:33:03 2008 From: holland at eaglegenomics.com (Richard Holland) Date: Sat, 15 Nov 2008 15:33:03 -0000 Subject: [Biojava-l] An Exception Has Occurred During Parsing ensembl Genbank file Homo_sapiens.0.dat In-Reply-To: <491EEA74.4080902@gmail.com> References: <491EEA74.4080902@gmail.com> Message-ID: There are many files on that site. I need to know which specific one you are working with so that I can also attempt to parse it with some debugging options turned on. Could you attach the file you are using to an email if possible? cheers, Richard 2008/11/15 pprun : > Hi Richard, > Did the original file you mean is the ensembl genbank file? > If so, you can get it from ensembl website > ftp://ftp.ensembl.org/pub/current_genbank/homo_sapiens/ > > > > Richard Holland ??: > > This exception occurs when the Genbank file contains a db_xref entry > that does not follow the format "Type:Accession". > > It's hard to tell if this is the problem here without seeing the original > file. > > cheers, > Richard > > 2008/11/15 pprun : > > > Environments: > ------------- > Biojava: 1.6 > Java: 1.6.0_10; Java HotSpot(TM) Client VM 11.0-b15 > System: Linux version 2.6.24-21-generic running on i386; UTF-8; zh_CN > > > The detail: > -------------- > Format_object=org.biojavax.bio.seq.io.GenbankFormat > Accession=chromosome:NCBI36:X:101815144:102815143:1 > Id=null > Comments=Bad dbxref > Parse_block=FEATURES Location/Qualifierssource 1..1000000/organism > "Homo sapiens"/db_xref "taxon:9606"gene complement(5148..5254)/gene > ENSG00000193147/locus_tag "AL035427.17"misc_RNA > complement(5148..5254)/gene "ENSG00000193147"/db_xref > "Clone_based_ensembl_transcri:AL035427.17-201"/db_xref > "RFAM:RF00026"/db_xref "AFFY_HuEx_1_0_st_v2:3985294"/note > "snRNA"/note "transcript_id=ENST00000348857"gene 32225..32681/gene > ENSG00000220050/locus_tag "RP4-769N13.2"misc_RNA 32225..32681/gene > "ENSG00000220050"/db_xref "AgilentProbe:A_32_P940920"/db_xref > "Clone_based_vega_transcript:RP4-769N13.2-001"/db_xref > "OTTT:OTTHUMT00000057625"/note "processed_pseudogene"/note > "transcript_id=ENST00000405532"gene 38617..44173/gene > ENSG00000158301/locus_tag "GPRASP2"/note "G-protein coupled > receptor-associated sorting > protein 2 (GASP-2). [Source:Uniprot/SWISSPROT;Acc:Q96D09]"mRNA > join(38617..38993,40223..40290,40630..40707,40978..44173)/gene > "ENSG00000158301"/note "transcript_id=ENST00000332262"CDS > 41311..43827/gene "ENSG00000158301"/protein_id > "ENSP00000339057"/note "transcript_id=ENST00000332262"/db_xref > "HGNC:GPRASP2"/db_xref "CCDS:CCDS14501.1"/db_xref > "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref > "RefSeq_peptide:NP_001004051.1"/db_xref > "RefSeq_peptide:NP_612446.1"/db_xref > "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref > "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref > "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref > "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref > "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref > "HGNC_curated_transcript:GPRASP2-001"/db_xref > "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref > "UniGene:Hs.603154"/db_xref "protein_id:AAH13576.1"/db_xref > "protein_id:AAH36772.1"/db_xref "protein_id:BAC04010.1"/db_xref > "protein_id:BAC04692.1"/db_xref "protein_id:CAI43060.1"/db_xref > "AFFY_HG_U133B:228027_at"/db_xref > "AFFY_HG_U133_Plus_2:228027_at"/db_xref > "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref > "AFFY_HuEx_1_0_st_v2:4016236"/db_xref > "AFFY_HuEx_1_0_st_v2:4016243"/db_xref > "AFFY_HuEx_1_0_st_v2:4016244"/db_xref > "AFFY_HuEx_1_0_st_v2:4016261"/db_xref > "AFFY_HuEx_1_0_st_v2:4016262"/db_xref > "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref > "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref > "Illumina_V2:ILMN_8313"/db_xref "OTTT:OTTHUMT00000057626"/db_xref > "shares_CDS_with_OTTT:GPRASP2-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057626"/translation > "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA > TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA > RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES > GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA > SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA > YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF > YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW > AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG > SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF > RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE > IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR > SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV > CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK > MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL > IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"mRNA > join(38853..38993,39571..39658,40223..40290,40630..40707, > 40978..44173)/gene "ENSG00000158301"/note > "transcript_id=ENST00000340885"CDS 41311..43827/gene > "ENSG00000158301"/protein_id "ENSP00000342986"/note > "transcript_id=ENST00000340885"/db_xref "CCDS:CCDS14501.1"/db_xref > "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref > "RefSeq_peptide:NP_001004051.1"/db_xref > "RefSeq_peptide:NP_612446.1"/db_xref "RefSeq_dna:NM_001004051"/db_xref > "RefSeq_dna:NM_138437"/db_xref > "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref > "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref > "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref > "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref > "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref > "HGNC_automatic_transcript:GPRASP2-201"/db_xref > "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref > "UniGene:Hs.603154"/db_xref "UniGene:Hs.656888"/db_xref > "protein_id:AAH13576.1"/db_xref "protein_id:AAH36772.1"/db_xref > "protein_id:BAC04010.1"/db_xref "protein_id:BAC04692.1"/db_xref > "protein_id:CAI43060.1"/db_xref "AFFY_HG_U133B:228027_at"/db_xref > "AFFY_HG_U133_Plus_2:228027_at"/db_xref > "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref > "AFFY_HuEx_1_0_st_v2:4016244"/db_xref > "AFFY_HuEx_1_0_st_v2:4016261"/db_xref > "AFFY_HuEx_1_0_st_v2:4016262"/db_xref > "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref > "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref > "Illumina_V2:ILMN_8313"/translation > "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA > TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA > RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES > GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA > SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA > YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF > YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW > AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG > SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF > RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE > IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR > SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV > CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK > MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL > IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"gene 47167..79981/gene > ENSG00000198908/locus_tag "BHLHB9"/note "Protein BHLHB9 (bHLHB9) > (Transcription regulator of > 60 kDa) (p60TRP). [Source:Uniprot/SWISSPROT;Acc:Q6PI77]"mRNA > join(47167..47262,47398..47532,75140..78879)/gene > "ENSG00000198908"/note "transcript_id=ENST00000372738"CDS > 75437..77080/gene "ENSG00000198908"/protein_id > "ENSP00000361823"/note "transcript_id=ENST00000372738"/db_xref > "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref > "RefSeq_peptide:NP_085142.1"/db_xref "RefSeq_dna:NM_030639"/db_xref > "EntrezGene:BHLHB9"/db_xref "AgilentProbe:A_23_P308954"/db_xref > "AgilentProbe:A_32_P348800"/db_xref > "AgilentProbe:A_32_P796164"/db_xref > "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref > "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref > "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref > "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-002"/db_xref > "IPI:IPI00513802.1"/db_xref "UniGene:Hs.4276"/db_xref > "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref > "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref > "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref > "AFFY_HG_U133A_2:213709_at"/db_xref > "AFFY_HG_U133_Plus_2:213709_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3937803"/db_xref > "AFFY_HuEx_1_0_st_v2:4016264"/db_xref > "AFFY_HuEx_1_0_st_v2:4016266"/db_xref > "AFFY_HuEx_1_0_st_v2:4016274"/db_xref > "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref > "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref > "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref > "OTTT:OTTHUMT00000057631"/db_xref > "shares_CDS_with_OTTT:BHLHB9-002"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057631"/translation > "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA > KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK > NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK > PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT > IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ > PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS > TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP > SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF > HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA > IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"mRNA > join(47167..47262,47398..47532,75140..78879)/gene > "ENSG00000198908"/note "transcript_id=ENST00000361229"CDS > 75368..77080/gene "ENSG00000198908"/protein_id > "ENSP00000354675"/note "transcript_id=ENST00000361229"/db_xref > "HGNC:BHLHB9"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref > "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref > "AgilentProbe:A_23_P308954"/db_xref > "AgilentProbe:A_32_P348800"/db_xref > "AgilentProbe:A_32_P796164"/db_xref > "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref > "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref > "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref > "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_automatic_transcript:BHLHB9-201"/db_xref > "IPI:IPI00513802.1"/db_xref "IPI:IPI00844393.1"/db_xref > "UniGene:Hs.4276"/db_xref "protein_id:AAH41409.1"/db_xref > "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref > "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref > "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref > "AFFY_HG_U133_Plus_2:213709_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3937803"/db_xref > "AFFY_HuEx_1_0_st_v2:4016264"/db_xref > "AFFY_HuEx_1_0_st_v2:4016266"/db_xref > "AFFY_HuEx_1_0_st_v2:4016274"/db_xref > "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref > "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref > "Illumina_V1:GI_39930462-S"/db_xref > "Illumina_V2:ILMN_3098"/translation > "DFDLGHIENQGQDWTGPYNWASTMAGTKNKTRAQAKTEKKAAIQ > AKAGAEREATGVVRPVAKTRAKAKAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPK > TLGKAMGDFTPKAGNESTSSTCKNEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKN > DKPEIGAQVCAEELEPAAGADCKPRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSR > IVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAE > ENACSLPVATACRPSRNTRSCSQPIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFA > CPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTL > IESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLK > ILGQLTTDFVHHYIVANYFSELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMK > ALAALKLIFNQKEAKANLVSGVAIFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEI > IETM"mRNA > join(72535..72615,74026..74137,74258..74352,75140..79981)/gene > "ENSG00000198908"/note "transcript_id=ENST00000372735"CDS > 75437..77080/gene "ENSG00000198908"/protein_id > "ENSP00000361820"/note "transcript_id=ENST00000372735"/db_xref > "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref > "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref > "AgilentCGH:A_14_P200664"/db_xref "AgilentProbe:A_23_P308954"/db_xref > "AgilentProbe:A_32_P348800"/db_xref > "AgilentProbe:A_32_P796164"/db_xref > "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref > "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref > "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref > "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-001"/db_xref > "IPI:IPI00513802.1"/db_xref "UniGene:Hs.603894"/db_xref > "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref > "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref > "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref > "AFFY_HG_U133A_2:213709_at"/db_xref > "AFFY_HG_U133_Plus_2:213709_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3937803"/db_xref > "AFFY_HuEx_1_0_st_v2:4016224"/db_xref > "AFFY_HuEx_1_0_st_v2:4016270"/db_xref > "AFFY_HuEx_1_0_st_v2:4016274"/db_xref > "AFFY_HuEx_1_0_st_v2:4016276"/db_xref > "AFFY_HuEx_1_0_st_v2:4016277"/db_xref > "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref > "Codelink:GE54272"/db_xref "Codelink:GE822399"/db_xref > "Illumina_V1:GI_14769619-S"/db_xref > "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref > "OTTP:59431"/db_xref "OTTP:OTTHUMP00000023715"/db_xref > "OTTT:OTTHUMT00000057630"/translation > "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA > KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK > NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK > PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT > IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ > PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS > TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP > SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF > HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA > IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"gene 99642..99712/gene > ENSG00000209002/locus_tag "AL035427.17"misc_RNA 99642..99712/gene > "ENSG00000209002"/db_xref > "Clone_based_ensembl_transcri:AL035427.17-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386267"gene > 112108..113045/gene ENSG00000216245/locus_tag "RP11-522L3.1"misc_RNA > 112108..113045/gene "ENSG00000216245"/db_xref > "Clone_based_vega_transcript:RP11-522L3.1-001"/db_xref > "OTTT:OTTHUMT00000057652"/note "processed_pseudogene"/note > "transcript_id=ENST00000404960"gene 113050..113109/gene > ENSG00000208995/locus_tag "AL590407.8"misc_RNA 113050..113109/gene > "ENSG00000208995"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386260"gene > 113185..113253/gene ENSG00000208993/locus_tag "AL590407.8"misc_RNA > 113185..113253/gene "ENSG00000208993"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386258"gene > 113254..114828/gene ENSG00000218436/locus_tag "RP11-522L3.2"misc_RNA > join(113254..113638,114269..114828)/gene "ENSG00000218436"/db_xref > "Clone_based_vega_transcript:RP11-522L3.2-001"/db_xref > "OTTT:OTTHUMT00000057653"/note "processed_pseudogene"/note > "transcript_id=ENST00000403360"gene 122692..123510/gene > ENSG00000220260/locus_tag "RP11-522L3.3"misc_RNA > join(122692..122931,123275..123510)/gene "ENSG00000220260"/db_xref > "Clone_based_vega_transcript:RP11-522L3.3-001"/db_xref > "AFFY_HuEx_1_0_st_v2:4016279"/db_xref > "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057654"/note > "processed_pseudogene"/note "transcript_id=ENST00000407716"gene > complement(123532..123603)/gene ENSG00000208991/locus_tag > "AL590407.8"misc_RNA complement(123532..123603)/gene > "ENSG00000208991"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386256"gene > 123970..124556/gene ENSG00000219427/locus_tag "RP11-522L3.4"misc_RNA > 123970..124556/gene "ENSG00000219427"/db_xref > "Clone_based_vega_transcript:RP11-522L3.4-001"/db_xref > "AFFY_HuEx_1_0_st_v2:4016279"/db_xref > "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057655"/note > "processed_pseudogene"/note "transcript_id=ENST00000406243"gene > 124837..126001/gene ENSG00000218342/locus_tag "RP11-522L3.5"misc_RNA > join(124837..125403,125910..126001)/gene "ENSG00000218342"/db_xref > "Clone_based_vega_transcript:RP11-522L3.5-001"/db_xref > "OTTT:OTTHUMT00000057656"/note "processed_pseudogene"/note > "transcript_id=ENST00000407350"gene 126004..126327/gene > ENSG00000220461/locus_tag "RP11-522L3.6"misc_RNA 126004..126327/gene > "ENSG00000220461"/db_xref > "Clone_based_vega_transcript:RP11-522L3.6-001"/db_xref > "OTTT:OTTHUMT00000057657"/note "processed_pseudogene"/note > "transcript_id=ENST00000403529"gene 126383..127840/gene > ENSG00000220086/locus_tag "RP11-522L3.7"misc_RNA > join(126383..127532,127754..127840)/gene "ENSG00000220086"/db_xref > "Clone_based_vega_transcript:RP11-522L3.7-001"/db_xref > "OTTT:OTTHUMT00000057648"/note "processed_pseudogene"/note > "transcript_id=ENST00000405058"gene 127842..127907/gene > ENSG00000208988/locus_tag "AL590407.8"misc_RNA 127842..127907/gene > "ENSG00000208988"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386253"gene > 129354..129411/gene ENSG00000208986/locus_tag "AL590407.8"misc_RNA > 129354..129411/gene "ENSG00000208986"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref > "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note > "transcript_id=ENST00000386251"gene 129412..129481/gene > ENSG00000208977/locus_tag "AL590407.8"misc_RNA 129412..129481/gene > "ENSG00000208977"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref > "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note > "transcript_id=ENST00000386242"gene 129482..132579/gene > ENSG00000216547/locus_tag "RP11-522L3.8"misc_RNA > join(129482..129726,131073..132579)/gene "ENSG00000216547"/db_xref > "Clone_based_vega_transcript:RP11-522L3.8-001"/db_xref > "AFFY_HuEx_1_0_st_v2:2778904"/db_xref "OTTT:OTTHUMT00000057649"/note > "processed_pseudogene"/note "transcript_id=ENST00000402841"gene > complement(132605..133087)/gene ENSG00000217506/locus_tag > "RP11-522L3.9"misc_RNA complement(132605..133087)/gene > "ENSG00000217506"/db_xref > "Clone_based_vega_transcript:RP11-522L3.9-001"/db_xref > "OTTT:OTTHUMT00000057650"/note "processed_pseudogene"/note > "transcript_id=ENST00000403019"gene 133182..134268/gene > ENSG00000218097/locus_tag "RP11-522L3.11"misc_RNA > 133182..134268/gene "ENSG00000218097"/db_xref > "Clone_based_vega_transcript:RP11-522L3.11-001"/db_xref > "AFFY_HuEx_1_0_st_v2:4016280"/db_xref > "AFFY_HuGene_1_0_st_v1:8174199"/db_xref "OTTT:OTTHUMT00000057651"/note > "processed_pseudogene"/note "transcript_id=ENST00000401627"gene > complement(134334..134386)/gene ENSG00000208972/locus_tag > "AL590407.8"misc_RNA complement(134334..134386)/gene > "ENSG00000208972"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386237"gene > 135559..135629/gene ENSG00000208969/locus_tag "AL590407.8"misc_RNA > 135559..135629/gene "ENSG00000208969"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386234"gene > 136559..136627/gene ENSG00000208964/locus_tag "AL590407.8"misc_RNA > 136559..136627/gene "ENSG00000208964"/db_xref > "Clone_based_ensembl_transcri:AL590407.8-201"/note > "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386229"gene > 263713..264741/gene ENSG00000102128/locus_tag "RAB40AL"/note > "Ras-related protein Rab-40A-like (Ras-like GTPase). > [Source:Uniprot/SWISSPROT;Acc:P0C0E4]"mRNA 263713..264741/gene > "ENSG00000102128"/note "transcript_id=ENST00000218249"CDS > 263760..264596/gene "ENSG00000102128"/protein_id > "ENSP00000218249"/note "transcript_id=ENST00000218249"/db_xref > "HGNC:RAB40AL"/db_xref "CCDS:CCDS35353.1"/db_xref > "Uniprot/SWISSPROT:RB40L_HUMAN"/db_xref > "RefSeq_peptide:NP_001027004.1"/db_xref > "RefSeq_dna:NM_001031834"/db_xref "EntrezGene:RAB40AL"/db_xref > "AgilentProbe:A_32_P88717"/db_xref "AgilentProbe:A_32_P88719"/db_xref > "EMBL:BC101169"/db_xref "EMBL:BC101170"/db_xref > "EMBL:BC101171"/db_xref "EMBL:BC101172"/db_xref > "EMBL:Z95624"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref > "GO:GO:0005739"/db_xref "GO:GO:0005886"/db_xref > "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref > "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref > "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref > "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40AL-001"/db_xref > "IPI:IPI00555763.1"/db_xref "MIM_GENE:300405"/db_xref > "UniGene:Hs.449517"/db_xref "protein_id:AAI01170.1"/db_xref > "protein_id:AAI01171.1"/db_xref "protein_id:AAI01172.1"/db_xref > "protein_id:AAI01173.1"/db_xref "protein_id:CAB09136.1"/db_xref > "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref > "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref > "AFFY_HG_U133_Plus_2:215782_at"/db_xref > "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref > "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref > "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3985604"/db_xref > "AFFY_HuEx_1_0_st_v2:3985605"/db_xref > "AFFY_HuEx_1_0_st_v2:4016299"/db_xref > "AFFY_HuGeneFL:Z95624_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref > "Illumina_V2:ILMN_24932"/db_xref "OTTT:OTTHUMT00000057679"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057679"/db_xref > "shares_CDS_with_OTTT:RAB40AL-001"/translation > "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYS > HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF > EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN > FNIIESFTELARIVLLRHRLNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIAL > RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCK > IS"gene 333902..334513/gene ENSG00000219659/locus_tag > "LL0XNC01-73E8.1"misc_RNA 333902..334513/gene > "ENSG00000219659"/db_xref > "Clone_based_vega_transcript:LL0XNC01-73E8.1-001"/db_xref > "OTTT:OTTHUMT00000057683"/note "processed_pseudogene"/note > "transcript_id=ENST00000406951"gene complement(389101..390681)/gene > ENSG00000133169/locus_tag "BEX1"/note "Protein BEX1 (Brain-expressed > X-linked protein 1). > [Source:Uniprot/SWISSPROT;Acc:Q9HBH7]"mRNA > join(complement(390537..390681), > complement(390083..390172),complement(389101..389720))/gene > "ENSG00000133169"/note "transcript_id=ENST00000372728"CDS > complement(389338..389715)/gene "ENSG00000133169"/protein_id > "ENSP00000361813"/note "transcript_id=ENST00000372728"/db_xref > "HGNC:BEX1"/db_xref "CCDS:CCDS35354.1"/db_xref > "Uniprot/SWISSPROT:BEX1_HUMAN"/db_xref > "RefSeq_peptide:NP_060946.3"/db_xref "RefSeq_dna:NM_018476"/db_xref > "EntrezGene:BEX1"/db_xref "AgilentProbe:A_23_P159952"/db_xref > "AgilentProbe:A_32_P168503"/db_xref "EMBL:AF183416"/db_xref > "EMBL:AF220189"/db_xref "EMBL:AF237783"/db_xref > "EMBL:AK290958"/db_xref "EMBL:AL008708"/db_xref > "EMBL:AY833561"/db_xref "EMBL:BC126427"/db_xref > "EMBL:BC126429"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0007275"/db_xref > "GO:GO:0007399"/db_xref "GO:GO:0030154"/db_xref > "HGNC_curated_transcript:BEX1-001"/db_xref "IPI:IPI00020533.4"/db_xref > "MIM_GENE:300690"/db_xref "protein_id:AAF67654.1"/db_xref > "protein_id:AAG09685.1"/db_xref "protein_id:AAG09752.1"/db_xref > "protein_id:AAI26428.1"/db_xref "protein_id:AAI26430.1"/db_xref > "protein_id:AAX40679.1"/db_xref "protein_id:BAF83647.1"/db_xref > "protein_id:CAI42418.1"/db_xref "AFFY_HG_U133A:218332_at"/db_xref > "AFFY_HG_U133A_2:218332_at"/db_xref > "AFFY_HG_U133_Plus_2:218332_at"/db_xref > "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref > "AFFY_HuEx_1_0_st_v2:3985407"/db_xref > "AFFY_HuEx_1_0_st_v2:3985408"/db_xref > "AFFY_U133_X3P:g8923715_3p_at"/db_xref "Codelink:GE82387"/db_xref > "Illumina_V1:GI_15147227-S"/db_xref "Illumina_V2:ILMN_23116"/db_xref > "OTTT:OTTHUMT00000058925"/db_xref > "shares_CDS_with_OTTT:BEX1-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058925"/translation > "MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYC > VPRGNRRRFRVRQPILQYRWDMMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLS > HSLRAVSTDPPHHDHHDEFCLMP"gene complement(395306..395427)/gene > ENSG00000221010/locus_tag "AL008708.4"misc_RNA > complement(395306..395427)/gene "ENSG00000221010"/db_xref > "Clone_based_ensembl_transcri:AL008708.4-201"/note "miRNA"/note > "transcript_id=ENST00000408083"gene complement(402265..419540)/gene > ENSG00000147206/locus_tag "NXF3"/note "Nuclear RNA export factor 3 > (TAP-like protein 3) > (TAPL-3). [Source:Uniprot/SWISSPROT;Acc:Q9H4D5]"mRNA > join(complement(419437..419535), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402682..402742), > complement(402265..402441))/gene "ENSG00000147206"/note > "transcript_id=ENST00000395065"CDS join(complement(419437..419464), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402731..402742))/gene > "ENSG00000147206"/protein_id "ENSP00000378504"/note > "transcript_id=ENST00000395065"/db_xref "CCDS:CCDS14503.1"/db_xref > "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref > "RefSeq_peptide:NP_071335.1"/db_xref "RefSeq_dna:NM_022052"/db_xref > "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref > "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref > "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref > "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref > "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref > "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003729"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0006810"/db_xref > "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref > "HGNC_curated_transcript:NXF3-001"/db_xref "IPI:IPI00004930.5"/db_xref > "IPI:IPI00552760.2"/db_xref "MIM_GENE:300316"/db_xref > "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref > "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref > "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref > "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref > "AFFY_HG_U133A:220110_s_at"/db_xref > "AFFY_HG_U133A_2:220110_s_at"/db_xref > "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref > "AFFY_HG_U95E:89668_at"/db_xref > "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref > "Illumina_V1:GI_11545756-S"/db_xref "Illumina_V2:ILMN_19573"/db_xref > "OTTT:OTTHUMT00000057684"/db_xref > "shares_CDS_with_OTTT:NXF3-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057684"/translation > "MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSS > SHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRME > GNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENA > SIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQ > EALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPG > EKCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGS > FFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCK > FFKDSRNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLC > FSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFT > LVPTAFSSSVPAFSQEQQKMLPS"mRNA join(complement(419437..419540), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402682..402742), > complement(402265..402441))/gene "ENSG00000147206"/note > "transcript_id=ENST00000372709"CDS join(complement(419437..419539), > complement(411156..411324),complement(410783..410936), > complement(410050..410133),complement(409839..409943), > complement(409634..409714),complement(409445..409514), > complement(409201..409289),complement(408696..408805), > complement(407017..407053),complement(406589..406657), > complement(406454..406509),complement(406204..406311), > complement(406025..406083),complement(405800..405915), > complement(405662..405704),complement(405001..405073), > complement(404055..404187),complement(402731..402742))/gene > "ENSG00000147206"/protein_id "ENSP00000361794"/note > "transcript_id=ENST00000372709"/db_xref "HGNC:NXF3"/db_xref > "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref > "RefSeq_peptide:NP_071335.1"/db_xref > "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref > "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref > "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref > "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref > "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref > "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003729"/db_xref "GO:GO:0003729"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0005737"/db_xref > "GO:GO:0006810"/db_xref "GO:GO:0016973"/db_xref > "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref > "HGNC_automatic_transcript:NXF3-201"/db_xref > "IPI:IPI00004930.5"/db_xref "IPI:IPI00552760.2"/db_xref > "IPI:IPI00872823.1"/db_xref "MIM_GENE:300316"/db_xref > "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref > "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref > "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref > "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref > "AFFY_HG_U133A:220110_s_at"/db_xref > "AFFY_HG_U133A_2:220110_s_at"/db_xref > "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref > "AFFY_HG_U95E:89668_at"/db_xref > "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref > "Illumina_V1:GI_11545756-S"/db_xref > "Illumina_V2:ILMN_19573"/translation > "LNLLQTPVPRPHRFSSREPYKDIGKMSLPSGHTTGHTDQVVQRR > ARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRK > GSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQN > ECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF > VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASL > DVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSILELFPKLLCL > DGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSA > YHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDIVDSLS > ALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSS > SLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS"gene > 413637..415717/gene ENSG00000217368/locus_tag > "LL0XNC01-221F2.2"misc_RNA 413637..415717/gene > "ENSG00000217368"/db_xref "RefSeq_dna_predicted:XR_037041"/db_xref > "RefSeq_dna_predicted:XR_037455"/db_xref > "RefSeq_dna_predicted:XR_039021"/db_xref > "Clone_based_vega_transcript:LL0XNC01-221F2.2- > 001"/db_xref "AFFY_HuEx_1_0_st_v2:3588353"/db_xref > "AFFY_HuEx_1_0_st_v2:4016361"/db_xref > "AFFY_HuEx_1_0_st_v2:4016362"/db_xref > "AFFY_HuEx_1_0_st_v2:4016363"/db_xref > "AFFY_U133_X3P:Hs.195728.0.A1_3p_at"/db_xref > "OTTT:OTTHUMT00000057692"/note "processed_pseudogene"/note > "transcript_id=ENST00000403064"gene complement(482560..482652)/gene > ENSG00000200662/locus_tag "AL035494.8"misc_RNA > complement(482560..482652)/gene "ENSG00000200662"/db_xref > "Clone_based_ensembl_transcri:AL035494.8-201"/db_xref > "RFAM:RF00019"/note "misc_RNA"/note > "transcript_id=ENST00000363792"gene complement(532453..533340)/gene > ENSG00000220705/locus_tag "RP4-635G19.1"misc_RNA > complement(532453..533340)/gene "ENSG00000220705"/db_xref > "Clone_based_vega_transcript:RP4-635G19.1-001"/db_xref > "AFFY_HuEx_1_0_st_v2:2670016"/db_xref > "AFFY_HuEx_1_0_st_v2:3985483"/db_xref > "AFFY_HuEx_1_0_st_v2:3985484"/db_xref > "AFFY_HuEx_1_0_st_v2:3985485"/db_xref "OTTT:OTTHUMT00000057693"/note > "processed_pseudogene"/note "transcript_id=ENST00000402296"gene > 541565..543636/gene ENSG00000102409/locus_tag "BEX4"/note "Protein > BEX4 (Brain-expressed X-linked protein 4) > (BEX1-like 1) (Nerve growth factor receptor-associated > protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NWD9]"mRNA > join(541565..541679,542590..543540)/gene "ENSG00000102409"/note > "transcript_id=ENST00000372691"CDS 542595..542957/gene > "ENSG00000102409"/protein_id "ENSP00000361776"/note > "transcript_id=ENST00000372691"/db_xref "HGNC:BEX4"/db_xref > "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref > "RefSeq_peptide:NP_001073894.1"/db_xref "EntrezGene:BEX4"/db_xref > "AgilentProbe:A_24_P40551"/db_xref "AgilentProbe:A_32_P156941"/db_xref > "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref > "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref > "HGNC_curated_transcript:BEX4-002"/db_xref "IPI:IPI00739732.1"/db_xref > "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref > "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref > "AFFY_HG_U133A:215440_s_at"/db_xref > "AFFY_HG_U133A_2:215440_s_at"/db_xref > "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref > "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016383"/db_xref > "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref > "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref > "Illumina_V2:ILMN_37437"/db_xref "OTTP:59442"/db_xref > "OTTP:OTTHUMP00000023729"/db_xref > "OTTT:OTTHUMT00000057695"/translation > "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ > KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY > MRFQTPEPDNHYDFCLIP"mRNA > join(541565..541679,542123..542205,542590..543636)/gene > "ENSG00000102409"/note "transcript_id=ENST00000372695"CDS > 542595..542957/gene "ENSG00000102409"/protein_id > "ENSP00000361780"/note "transcript_id=ENST00000372695"/db_xref > "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref > "RefSeq_peptide:NP_001073894.1"/db_xref > "RefSeq_dna:NM_001080425"/db_xref > "RefSeq_dna_predicted:XM_043653"/db_xref "EntrezGene:BEX4"/db_xref > "AgilentProbe:A_23_P114391"/db_xref "AgilentProbe:A_24_P40551"/db_xref > "AgilentProbe:A_32_P156941"/db_xref > "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref > "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref > "HGNC_curated_transcript:BEX4-001"/db_xref "IPI:IPI00739732.1"/db_xref > "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref > "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref > "AFFY_HG_U133A:215440_s_at"/db_xref > "AFFY_HG_U133A_2:215440_s_at"/db_xref > "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref > "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016383"/db_xref > "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref > "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref > "Illumina_V2:ILMN_37437"/db_xref "OTTT:OTTHUMT00000057694"/db_xref > "shares_CDS_with_OTTT:BEX4-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057694"/translation > "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ > KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY > MRFQTPEPDNHYDFCLIP"gene complement(579439..581634)/gene > ENSG00000180964/locus_tag "TCEAL8"/note "Transcription elongation > factor A protein-like 8 > (TCEA-like protein 8) (Transcription elongation factor S- > II protein-like 8). [Source:Uniprot/SWISSPROT;Acc:Q8IYN2]"mRNA > join(complement(581519..581634), > complement(579439..580458))/gene "ENSG00000180964"/note > "transcript_id=ENST00000360000"CDS complement(580067..580420)/gene > "ENSG00000180964"/protein_id "ENSP00000353093"/note > "transcript_id=ENST00000360000"/db_xref "HGNC:TCEAL8"/db_xref > "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref > "RefSeq_peptide:NP_001006685.1"/db_xref > "RefSeq_peptide:NP_699164.1"/db_xref "EntrezGene:TCEAL8"/db_xref > "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref > "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref > "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref > "HGNC_curated_transcript:TCEAL8-002"/db_xref > "IPI:IPI00217810.1"/db_xref "UniGene:Hs.612731"/db_xref > "protein_id:AAH35573.1"/db_xref "protein_id:CAI41979.1"/db_xref > "AFFY_HG_U133B:224819_at"/db_xref > "AFFY_HG_U133_Plus_2:224819_at"/db_xref > "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref > "AFFY_HuEx_1_0_st_v2:3985503"/db_xref > "AFFY_HuEx_1_0_st_v2:3985505"/db_xref > "AFFY_U133_X3P:224819_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref > "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref > "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057699"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057699"/db_xref > "shares_CDS_with_OTTT:TCEAL8-002"/translation > "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ > EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK > QRHSRSRPYPVCFRP"mRNA join(complement(581519..581634), > complement(581046..581118),complement(579439..580458))/gene > "ENSG00000180964"/note "transcript_id=ENST00000372685"CDS > complement(580067..580420)/gene "ENSG00000180964"/protein_id > "ENSP00000361770"/note "transcript_id=ENST00000372685"/db_xref > "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref > "RefSeq_peptide:NP_001006685.1"/db_xref > "RefSeq_peptide:NP_699164.1"/db_xref "RefSeq_dna:NM_001006684"/db_xref > "RefSeq_dna:NM_153333"/db_xref "EntrezGene:TCEAL8"/db_xref > "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref > "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref > "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref > "HGNC_curated_transcript:TCEAL8-001"/db_xref > "IPI:IPI00217810.1"/db_xref "protein_id:AAH35573.1"/db_xref > "protein_id:CAI41979.1"/db_xref "AFFY_HG_U133B:224819_at"/db_xref > "AFFY_HG_U133_Plus_2:224819_at"/db_xref > "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref > "AFFY_HuEx_1_0_st_v2:3985503"/db_xref > "AFFY_HuEx_1_0_st_v2:3985504"/db_xref > "AFFY_HuEx_1_0_st_v2:3985505"/db_xref > "AFFY_U133_X3P:224819_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref > "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref > "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref > "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057698"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057698"/db_xref > "shares_CDS_with_OTTT:TCEAL8-001"/translation > "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ > EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK > QRHSRSRPYPVCFRP"mRNA join(complement(580331..580420), > complement(580100..580231))/gene "ENSG00000180964"/note > "transcript_id=ENST00000372681"CDS join(complement(580331..580420), > complement(580100..580231))/gene "ENSG00000180964"/protein_id > "ENSP00000361766"/note "transcript_id=ENST00000372681"/db_xref > "Uniprot/SPTREMBL:Q5H9L1_HUMAN"/db_xref "EMBL:Z68694"/db_xref > "GO:GO:0003746"/db_xref "HGNC_automatic_transcript:TCEAL8-201"/db_xref > "IPI:IPI00640443.1"/db_xref "protein_id:CAI41978.1"/db_xref > "AFFY_HuEx_1_0_st_v2:3985503"/db_xref > "AFFY_HuEx_1_0_st_v2:3985504"/translation > "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEDTPVRHLDPEEMIR > GVDELERLREEIRRVRNKFVMMHWKQRHSR"gene complement(585013..586022)/gene > ENSG00000219002/locus_tag "LL0XNC01-177E8.2"misc_RNA > join(complement(585929..586022), > complement(585013..585759))/gene "ENSG00000219002"/db_xref > "Clone_based_vega_transcript:LL0XNC01-177E8.2- > 001"/db_xref "OTTT:OTTHUMT00000057697"/note > "processed_pseudogene"/note "transcript_id=ENST00000406148"gene > complement(600132..603313)/gene ENSG00000204065/locus_tag > "TCEAL5"/note "Transcription elongation factor A protein-like 5 > (TCEA-like protein 5) (Transcription elongation factor S- > II protein-like 5). [Source:Uniprot/SWISSPROT;Acc:Q5H9L2]"mRNA > join(complement(603114..603313), > complement(601716..601783),complement(600132..601031))/gene > "ENSG00000204065"/note "transcript_id=ENST00000372680"CDS > complement(600384..601004)/gene "ENSG00000204065"/protein_id > "ENSP00000361765"/note "transcript_id=ENST00000372680"/db_xref > "HGNC:TCEAL5"/db_xref "CCDS:CCDS35356.1"/db_xref > "Uniprot/SWISSPROT:TCAL5_HUMAN"/db_xref > "RefSeq_peptide:NP_001012997.1"/db_xref > "RefSeq_dna:NM_001012979"/db_xref > "Uniprot/SPTREMBL:A2RUJ4_HUMAN"/db_xref "EntrezGene:TCEAL5"/db_xref > "AgilentProbe:A_23_P62399"/db_xref "AgilentProbe:A_32_P18470"/db_xref > "EMBL:BC132922"/db_xref "EMBL:BC132924"/db_xref > "EMBL:CH471190"/db_xref "EMBL:Z68694"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL5-001"/db_xref > "IPI:IPI00257932.1"/db_xref "UniGene:Hs.403462"/db_xref > "protein_id:AAI32923.1"/db_xref "protein_id:AAI32925.1"/db_xref > "protein_id:CAI41976.1"/db_xref "protein_id:EAW54717.1"/db_xref > "AFFY_HG_U95E:87383_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "Codelink:GE876309"/db_xref > "Illumina_V1:GI_29744085-S"/db_xref "Illumina_V2:ILMN_10460"/db_xref > "OTTP:59448"/db_xref "OTTP:OTTHUMP00000023730"/db_xref > "OTTT:OTTHUMT00000057696"/db_xref > "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057696"/db_xref > "shares_CDS_and_UTR_with_OTTT:TCEAL5-001"/translation > "MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDM > EGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRA > AEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELR > KKQKMGGFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV"gene > complement(635795..637458)/gene ENSG00000133134/locus_tag > "BEX2"/note "Protein BEX2 (Brain-expressed X-linked protein 2) > (hBex2). [Source:Uniprot/SWISSPROT;Acc:Q9BXY8]"mRNA > join(complement(637301..637458), > complement(636799..636874),complement(635795..636422))/gene > "ENSG00000133134"/note "transcript_id=ENST00000372677"CDS > complement(636031..636417)/gene "ENSG00000133134"/protein_id > "ENSP00000361762"/note "transcript_id=ENST00000372677"/db_xref > "HGNC:BEX2"/db_xref "CCDS:CCDS14505.1"/db_xref > "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref > "RefSeq_peptide:NP_116010.1"/db_xref "RefSeq_dna:NM_032621"/db_xref > "EntrezGene:BEX2"/db_xref "AgilentProbe:A_23_P22735"/db_xref > "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref > "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref > "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-002"/db_xref > "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref > "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref > "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref > "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref > "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref > "AFFY_HG_U133_Plus_2:224367_at"/db_xref > "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref > "AFFY_HuEx_1_0_st_v2:3985510"/db_xref > "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref > "Illumina_V1:hmm18828-S"/db_xref "Illumina_V1:hmm36653-S"/db_xref > "OTTT:OTTHUMT00000057702"/db_xref > "shares_CDS_with_OTTT:BEX2-002"/db_xref > "shares_CDS_with_OTTT:BEX2-003"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057702"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057703"/translation > "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS > EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK > QLSHSLRAVSTDPPHHDHHDEFCLMP"mRNA join(complement(637337..637448), > complement(636799..636874),complement(635943..636422))/gene > "ENSG00000133134"/note "transcript_id=ENST00000372674"CDS > complement(636031..636417)/gene "ENSG00000133134"/protein_id > "ENSP00000361759"/note "transcript_id=ENST00000372674"/db_xref > "CCDS:CCDS14505.1"/db_xref "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref > "RefSeq_peptide:NP_116010.1"/db_xref "EntrezGene:BEX2"/db_xref > "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref > "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref > "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-003"/db_xref > "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref > "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref > "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref > "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref > "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref > "AFFY_HG_U133_Plus_2:224367_at"/db_xref > "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref > "AFFY_HuEx_1_0_st_v2:3985510"/db_xref > "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref > "Illumina_V1:hmm18828-S"/db_xref "OTTP:59451"/db_xref > "OTTP:OTTHUMP00000023736"/db_xref "OTTT:OTTHUMT00000057703"/db_xref > "shares_CDS_with_ENST:ENST00000372677"/translation > "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS > EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK > QLSHSLRAVSTDPPHHDHHDEFCLMP"gene 656670..658766/gene > ENSG00000182916/locus_tag "TCEAL7"/note "Transcription elongation > factor A protein-like 7 > (TCEA-like protein 7) (Transcription elongation factor S- > II protein-like 7). [Source:Uniprot/SWISSPROT;Acc:Q9BRU2]"mRNA > join(656670..656745,657418..657481,657818..658529)/gene > "ENSG00000182916"/note "transcript_id=ENST00000372666"CDS > 657845..658147/gene "ENSG00000182916"/protein_id > "ENSP00000361751"/note "transcript_id=ENST00000372666"/db_xref > "HGNC:TCEAL7"/db_xref "CCDS:CCDS14506.1"/db_xref > "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref > "RefSeq_peptide:NP_689491.1"/db_xref "RefSeq_dna:NM_152278"/db_xref > "EntrezGene:TCEAL7"/db_xref "AgilentCGH:A_14_P111438"/db_xref > "AgilentProbe:A_23_P125788"/db_xref "AgilentProbe:A_24_P49106"/db_xref > "EMBL:BC005988"/db_xref "EMBL:BC016786"/db_xref > "EMBL:Z92846"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref > "HGNC_curated_transcript:TCEAL7-002"/db_xref > "IPI:IPI00059712.1"/db_xref "protein_id:AAH05988.2"/db_xref > "protein_id:AAH16786.1"/db_xref "protein_id:CAI41965.1"/db_xref > "AFFY_HG_U133B:227705_at"/db_xref > "AFFY_HG_U133_Plus_2:227705_at"/db_xref > "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016444"/db_xref > "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref > "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref > "Illumina_V2:ILMN_13373"/db_xref "OTTP:59455"/db_xref > "OTTP:OTTHUMP00000023738"/db_xref "OTTT:OTTHUMT00000057705"/db_xref > "shares_CDS_with_ENST:ENST00000332431"/translation > "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS > LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"mRNA > join(656678..656745,657364..657481,657818..658766)/gene > "ENSG00000182916"/note "transcript_id=ENST00000332431"CDS > 657845..658147/gene "ENSG00000182916"/protein_id > "ENSP00000329794"/note "transcript_id=ENST00000332431"/db_xref > "CCDS:CCDS14506.1"/db_xref "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref > "RefSeq_peptide:NP_689491.1"/db_xref "EntrezGene:TCEAL7"/db_xref > "AgilentCGH:A_14_P111438"/db_xref "AgilentProbe:A_23_P125788"/db_xref > "AgilentProbe:A_24_P49106"/db_xref "EMBL:BC005988"/db_xref > "EMBL:BC016786"/db_xref "EMBL:Z92846"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL7-001"/db_xref > "IPI:IPI00059712.1"/db_xref "UniGene:Hs.602651"/db_xref > "protein_id:AAH05988.2"/db_xref "protein_id:AAH16786.1"/db_xref > "protein_id:CAI41965.1"/db_xref "AFFY_HG_U133B:227705_at"/db_xref > "AFFY_HG_U133_Plus_2:227705_at"/db_xref > "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016446"/db_xref > "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref > "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref > "Illumina_V2:ILMN_13373"/db_xref "OTTT:OTTHUMT00000057704"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057704"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057705"/db_xref > "shares_CDS_with_OTTT:TCEAL7-001"/db_xref > "shares_CDS_with_OTTT:TCEAL7-002"/translation > "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS > LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"gene > complement(673903..674170)/gene ENSG00000215026/locus_tag > "LL0XNC01-105G4.3"misc_RNA complement(673903..674170)/gene > "ENSG00000215026"/db_xref "Clone_based_vega_transcript:LL0XNC01-105G4.3- > 001"/db_xref "OTTT:OTTHUMT00000057708"/note > "processed_pseudogene"/note "transcript_id=ENST00000399456"gene > 682893..684892/gene ENSG00000185222/locus_tag "WBP5"/note "WW > domain-binding protein 5 (WBP-5). > [Source:Uniprot/SWISSPROT;Acc:Q9UHQ7]"mRNA > join(682893..683047,684056..684892)/gene "ENSG00000185222"/note > "transcript_id=ENST00000372656"CDS 684126..684440/gene > "ENSG00000185222"/protein_id "ENSP00000361740"/note > "transcript_id=ENST00000372656"/db_xref "HGNC:WBP5"/db_xref > "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref > "RefSeq_peptide:NP_001006613.1"/db_xref > "RefSeq_peptide:NP_001006614.1"/db_xref > "RefSeq_peptide:NP_001006615.1"/db_xref > "RefSeq_peptide:NP_057387.1"/db_xref "EntrezGene:WBP5"/db_xref > "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref > "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref > "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref > "HGNC_curated_transcript:WBP5-002"/db_xref "IPI:IPI00008434.1"/db_xref > "protein_id:AAF17229.1"/db_xref "protein_id:AAH23544.1"/db_xref > "protein_id:CAD12327.1"/db_xref "AFFY_HG_Focus:217975_at"/db_xref > "AFFY_HG_U133A:217975_at"/db_xref "AFFY_HG_U133A_2:217975_at"/db_xref > "AFFY_HG_U133_Plus_2:217975_at"/db_xref > "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016456"/db_xref > "AFFY_HuEx_1_0_st_v2:4016458"/db_xref > "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref > "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref > "OTTT:OTTHUMT00000057707"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057707"/db_xref > "shares_CDS_with_OTTT:WBP5-002"/translation > "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT > FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY > LM"mRNA join(682893..683047,683524..683602,684056..684892)/gene > "ENSG00000185222"/note "transcript_id=ENST00000372661"CDS > 684126..684440/gene "ENSG00000185222"/protein_id > "ENSP00000361745"/note "transcript_id=ENST00000372661"/db_xref > "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref > "RefSeq_peptide:NP_001006613.1"/db_xref > "RefSeq_peptide:NP_001006614.1"/db_xref > "RefSeq_peptide:NP_001006615.1"/db_xref > "RefSeq_peptide:NP_057387.1"/db_xref "RefSeq_dna:NM_001006612"/db_xref > "RefSeq_dna:NM_001006613"/db_xref "RefSeq_dna:NM_001006614"/db_xref > "RefSeq_dna:NM_016303"/db_xref "EntrezGene:WBP5"/db_xref > "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref > "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref > "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref > "GO:GO:0050699"/db_xref "HGNC_curated_transcript:WBP5-001"/db_xref > "IPI:IPI00008434.1"/db_xref "protein_id:AAF17229.1"/db_xref > "protein_id:AAH23544.1"/db_xref "protein_id:CAD12327.1"/db_xref > "AFFY_HG_Focus:217975_at"/db_xref "AFFY_HG_U133A:217975_at"/db_xref > "AFFY_HG_U133A_2:217975_at"/db_xref > "AFFY_HG_U133_Plus_2:217975_at"/db_xref > "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016456"/db_xref > "AFFY_HuEx_1_0_st_v2:4016458"/db_xref > "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref > "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref > "OTTT:OTTHUMT00000057706"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057706"/db_xref > "shares_CDS_with_OTTT:WBP5-001"/translation > "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT > FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY > LM"gene 702767..704518/gene ENSG00000166681/locus_tag > "NGFRAP1"/note "Protein BEX3 (Brain-expressed X-linked protein 3) > (p75NTR-associated cell death executor) (Nerve growth > factor receptor-associated protein 1) (Ovarian granulosa > cell 13.0 kDa protein HGR74). > [Source:Uniprot/SWISSPROT;Acc:Q00994]"mRNA > join(702767..703054,703469..703547,703904..704509)/gene > "ENSG00000166681"/note "transcript_id=ENST00000299872"CDS > 703963..704268/gene "ENSG00000166681"/protein_id > "ENSP00000299872"/note "transcript_id=ENST00000299872"/db_xref > "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref > "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref > "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref > "HGNC_automatic_transcript:NGFRAP1-201"/db_xref > "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "shares_CDS_with_OTTT:NGFRAP1-002"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057710"/translation > "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR > QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA > join(702767..703054,703469..703547,703904..704509)/gene > "ENSG00000166681"/note "transcript_id=ENST00000372645"CDS > 703933..704268/gene "ENSG00000166681"/protein_id > "ENSP00000361728"/note "transcript_id=ENST00000372645"/db_xref > "HGNC:NGFRAP1"/db_xref "CCDS:CCDS14508.1"/db_xref > "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref > "RefSeq_peptide:NP_055195.1"/db_xref > "RefSeq_peptide:NP_996798.1"/db_xref > "RefSeq_peptide:NP_996800.1"/db_xref "RefSeq_dna:NM_014380"/db_xref > "RefSeq_dna:NM_206915"/db_xref "EntrezGene:NGFRAP1"/db_xref > "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref > "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref > "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref > "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref > "GO:GO:0005123"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref > "GO:GO:0005829"/db_xref "GO:GO:0006915"/db_xref > "GO:GO:0006917"/db_xref "GO:GO:0007275"/db_xref > "GO:GO:0008625"/db_xref "GO:GO:0046872"/db_xref > "HGNC_curated_transcript:NGFRAP1-001"/db_xref > "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref > "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref > "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref > "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref > "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref > "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTT:OTTHUMT00000057709"/db_xref > "shares_CDS_with_OTTT:NGFRAP1-001"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057709"/translation > "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA > PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD > HHDEFCLMP"mRNA join(702781..703054,703469..703547,703951..704518)/gene > "ENSG00000166681"/note "transcript_id=ENST00000361298"CDS > 703963..704268/gene "ENSG00000166681"/protein_id > "ENSP00000354843"/note "transcript_id=ENST00000361298"/db_xref > "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref > "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref > "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref > "HGNC_curated_transcript:NGFRAP1-002"/db_xref > "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTP:59460"/db_xref "OTTP:OTTHUMP00000023742"/db_xref > "OTTT:OTTHUMT00000057710"/db_xref > "shares_CDS_with_ENST:ENST00000299872"/translation > "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR > QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA > join(702848..703054,703904..704501)/gene "ENSG00000166681"/note > "transcript_id=ENST00000372635"CDS 703933..704268/gene > "ENSG00000166681"/protein_id "ENSP00000361718"/note > "transcript_id=ENST00000372635"/db_xref "CCDS:CCDS14508.1"/db_xref > "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref > "RefSeq_peptide:NP_055195.1"/db_xref > "RefSeq_peptide:NP_996798.1"/db_xref > "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref > "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref > "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref > "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref > "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005634"/db_xref > "GO:GO:0005737"/db_xref "GO:GO:0006915"/db_xref > "GO:GO:0007275"/db_xref "GO:GO:0046872"/db_xref > "HGNC_curated_transcript:NGFRAP1-003"/db_xref > "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref > "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref > "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref > "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref > "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref > "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTP:59461"/db_xref "OTTP:OTTHUMP00000023743"/db_xref > "OTTT:OTTHUMT00000057711"/translation > "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA > PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD > HHDEFCLMP"mRNA join(703357..703547,703951..704512)/gene > "ENSG00000166681"/note "transcript_id=ENST00000372634"CDS > 703963..704268/gene "ENSG00000166681"/protein_id > "ENSP00000361717"/note "transcript_id=ENST00000372634"/db_xref > "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref > "RefSeq_dna:NM_206917"/db_xref "EntrezGene:NGFRAP1"/db_xref > "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref > "AgilentProbe:A_32_P27879"/db_xref > "HGNC_curated_transcript:NGFRAP1-004"/db_xref > "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref > "AFFY_HG_U133A:217963_s_at"/db_xref > "AFFY_HG_U133A_2:217963_s_at"/db_xref > "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref > "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref > "AFFY_HuEx_1_0_st_v2:4016461"/db_xref > "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref > "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref > "OTTP:59462"/db_xref "OTTP:OTTHUMP00000023744"/db_xref > "OTTT:OTTHUMT00000057712"/translation > "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR > QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"gene > complement(826191..845930)/gene ENSG00000172476/locus_tag > "RAB40A"/note "Ras-related protein Rab-40A (SOCS box-containing > protein RAR2A) (Protein Rar-2). > [Source:Uniprot/SWISSPROT;Acc:Q8WXH6]"mRNA > complement(826191..829316)/gene "ENSG00000172476"/note > "transcript_id=ENST00000372633"CDS complement(826364..827197)/gene > "ENSG00000172476"/protein_id "ENSP00000361716"/note > "transcript_id=ENST00000372633"/db_xref "HGNC:RAB40A"/db_xref > "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref > "RefSeq_peptide:NP_543155.2"/db_xref "RefSeq_dna:NM_080879"/db_xref > "EntrezGene:RAB40A"/db_xref "AgilentCGH:A_14_P129520"/db_xref > "AgilentProbe:A_23_P259912"/db_xref > "AgilentProbe:A_32_P464296"/db_xref "AgilentProbe:A_32_P88719"/db_xref > "EMBL:AB232637"/db_xref "EMBL:AF132748"/db_xref > "EMBL:AF422143"/db_xref "EMBL:BC074854"/db_xref > "EMBL:BC074855"/db_xref "EMBL:BC113501"/db_xref > "EMBL:BC117232"/db_xref "EMBL:Z69733"/db_xref > "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref > "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref > "GO:GO:0005622"/db_xref "GO:GO:0005886"/db_xref > "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref > "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref > "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref > "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40A-002"/db_xref > "IPI:IPI00514509.4"/db_xref "UniGene:Hs.27453"/db_xref > "protein_id:AAH74854.1"/db_xref "protein_id:AAH74855.1"/db_xref > "protein_id:AAI13502.1"/db_xref "protein_id:AAI17233.1"/db_xref > "protein_id:AAL60514.1"/db_xref "protein_id:AAL75949.1"/db_xref > "protein_id:BAF02899.1"/db_xref "protein_id:CAI41993.1"/db_xref > "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref > "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A:217589_at"/db_xref > "AFFY_HG_U133A_2:215782_at"/db_xref > "AFFY_HG_U133A_2:217589_at"/db_xref > "AFFY_HG_U133_Plus_2:215782_at"/db_xref > "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref > "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref > "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref > "AFFY_HG_U95Av2:33477_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3985603"/db_xref > "AFFY_HuEx_1_0_st_v2:3985604"/db_xref > "AFFY_HuEx_1_0_st_v2:3985605"/db_xref > "AFFY_HuEx_1_0_st_v2:3985606"/db_xref > "AFFY_HuEx_1_0_st_v2:3985608"/db_xref > "AFFY_HuEx_1_0_st_v2:4016299"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref > "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref > "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V1:Hs.496523-S"/db_xref > "Illumina_V2:ILMN_123867"/db_xref "Illumina_V2:ILMN_20197"/db_xref > "OTTP:59465"/db_xref "OTTP:OTTHUMP00000023746"/db_xref > "OTTT:OTTHUMT00000057714"/translation > "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS > HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF > EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN > FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL > RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI > S"mRNA join(complement(845811..845930), > complement(843815..843966),complement(826195..827267))/gene > "ENSG00000172476"/note "transcript_id=ENST00000304236"CDS > complement(826364..827197)/gene "ENSG00000172476"/protein_id > "ENSP00000305648"/note "transcript_id=ENST00000304236"/db_xref > "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref > "RefSeq_peptide:NP_543155.2"/db_xref "EntrezGene:RAB40A"/db_xref > "AgilentCGH:A_14_P129520"/db_xref "AgilentProbe:A_23_P259912"/db_xref > "AgilentProbe:A_32_P88719"/db_xref "EMBL:AB232637"/db_xref > "EMBL:AF132748"/db_xref "EMBL:AF422143"/db_xref > "EMBL:BC074854"/db_xref "EMBL:BC074855"/db_xref > "EMBL:BC113501"/db_xref "EMBL:BC117232"/db_xref > "EMBL:Z69733"/db_xref "GO:GO:0000166"/db_xref > "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref > "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref > "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref > "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref > "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref > "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref > "HGNC_curated_transcript:RAB40A-001"/db_xref > "IPI:IPI00514509.4"/db_xref "protein_id:AAH74854.1"/db_xref > "protein_id:AAH74855.1"/db_xref "protein_id:AAI13502.1"/db_xref > "protein_id:AAI17233.1"/db_xref "protein_id:AAL60514.1"/db_xref > "protein_id:AAL75949.1"/db_xref "protein_id:BAF02899.1"/db_xref > "protein_id:CAI41993.1"/db_xref "AFFY_HC_G110:107_at"/db_xref > "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref > "AFFY_HG_U133A:217589_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref > "AFFY_HG_U133A_2:217589_at"/db_xref > "AFFY_HG_U133_Plus_2:215782_at"/db_xref > "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref > "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref > "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref > "AFFY_HG_U95Av2:33477_at"/db_xref > "AFFY_HuEx_1_0_st_v2:3985603"/db_xref > "AFFY_HuEx_1_0_st_v2:3985604"/db_xref > "AFFY_HuEx_1_0_st_v2:3985605"/db_xref > "AFFY_HuEx_1_0_st_v2:4016299"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref > "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref > "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref > "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V2:ILMN_20197"/db_xref > "OTTP:59464"/db_xref "OTTP:OTTHUMP00000023745"/db_xref > "OTTT:OTTHUMT00000057713"/db_xref > "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057713"/db_xref > "shares_CDS_and_UTR_with_OTTT:RAB40A-001"/translation > "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS > HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF > EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN > FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL > RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI > S"gene 902911..914166/gene ENSG00000133142/locus_tag "TCEAL4"/note > "Transcription elongation factor A protein-like 4 > (TCEA-like protein 4) (Transcription elongation factor S- > II protein-like 4). [Source:Uniprot/SWISSPROT;Acc:Q96EI5]"mRNA > join(902911..902973,903535..903654,912066..912201, > 912660..912742,913090..913956)/gene "ENSG00000133142"/note > "transcript_id=ENST00000372629"CDS > join(902911..902973,903535..903654,912066..912201, > 912660..912742,913090..913764)/gene > "ENSG00000133142"/protein_id "ENSP00000361712"/note > "transcript_id=ENST00000372629"/db_xref "HGNC:TCEAL4"/db_xref > "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref > "RefSeq_peptide:NP_001006936.1"/db_xref > "RefSeq_peptide:NP_001006937.1"/db_xref > "RefSeq_peptide:NP_001006938.1"/db_xref > "RefSeq_peptide:NP_079139.4"/db_xref > "Uniprot/Varsplic:Q96EI5-2"/db_xref "EntrezGene:TCEAL4"/db_xref > "AgilentCGH:A_14_P118508"/db_xref "AgilentCGH:A_14_P128392"/db_xref > "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref > "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref > "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL4-001"/db_xref > "IPI:IPI00647163.1"/db_xref "IPI:IPI00657999.3"/db_xref > "protein_id:AAG44794.1"/db_xref "protein_id:AAH12296.1"/db_xref > "protein_id:AAL40909.1"/db_xref "protein_id:BAB15023.1"/db_xref > "protein_id:CAI42031.1"/db_xref "AFFY_HG_U133A:202371_at"/db_xref > "AFFY_HG_U133A_2:202371_at"/db_xref > "AFFY_HG_U133_Plus_2:202371_at"/db_xref > "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016542"/db_xref > "AFFY_HuEx_1_0_st_v2:4016545"/db_xref > "AFFY_HuEx_1_0_st_v2:4016547"/db_xref > "AFFY_HuEx_1_0_st_v2:4016548"/db_xref > "AFFY_HuEx_1_0_st_v2:4016549"/db_xref > "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref > "Illumina_V1:GI_21361595-S"/db_xref "Illumina_V2:ILMN_15986"/db_xref > "Illumina_V2:ILMN_1896"/db_xref "OTTT:OTTHUMT00000252336"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000252336"/db_xref > "shares_CDS_with_OTTT:TCEAL4-001"/translation > "MPAGGQAPQLTPVIPAFWEARGLPNSKGRDKVHICQCEEWKGHI > SYVERDITTSEIKSLPQVSVRAFHAASGTLEWRKGNGYGRGKGWGWGRVESREAGPSV > DRDGGLRVCCSQRSAKPEKEEQPVQNPRRSVKDRKRRGNLDMEKLYSENEGMASNQGK > MENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGK > SEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKG > LAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFY > PRGPREFRGGCRAPRRDIEDIPYV"mRNA > join(911932..912065,912660..912732,913090..914166)/gene > "ENSG00000133142"/note "transcript_id=ENST00000395036"CDS > 913117..913764/gene "ENSG00000133142"/protein_id > "ENSP00000378477"/note "transcript_id=ENST00000395036"/db_xref > "CCDS:CCDS14510.2"/db_xref "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref > "RefSeq_peptide:NP_001006936.1"/db_xref > "RefSeq_peptide:NP_001006937.1"/db_xref > "RefSeq_peptide:NP_001006938.1"/db_xref > "RefSeq_peptide:NP_079139.4"/db_xref "RefSeq_dna:NM_001006935"/db_xref > "RefSeq_dna:NM_001006937"/db_xref "RefSeq_dna:NM_024863"/db_xref > "EntrezGene:TCEAL4"/db_xref "AgilentCGH:A_14_P128392"/db_xref > "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref > "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref > "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL4-201"/db_xref > "IPI:IPI00657999.3"/db_xref "protein_id:AAG44794.1"/db_xref > "protein_id:AAH12296.1"/db_xref "protein_id:AAL40909.1"/db_xref > "protein_id:BAB15023.1"/db_xref "protein_id:CAI42031.1"/db_xref > "AFFY_HG_U133A:202371_at"/db_xref "AFFY_HG_U133A_2:202371_at"/db_xref > "AFFY_HG_U133_Plus_2:202371_at"/db_xref > "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016538"/db_xref > "AFFY_HuEx_1_0_st_v2:4016540"/db_xref > "AFFY_HuEx_1_0_st_v2:4016541"/db_xref > "AFFY_HuEx_1_0_st_v2:4016545"/db_xref > "AFFY_HuEx_1_0_st_v2:4016547"/db_xref > "AFFY_HuEx_1_0_st_v2:4016548"/db_xref > "AFFY_HuEx_1_0_st_v2:4016549"/db_xref > "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref > "Illumina_V1:GI_21361595-S"/db_xref > "Illumina_V2:ILMN_1896"/translation > "MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENE > GKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPES > EGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFD > NMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV"gene > 933892..936368/gene ENSG00000196507/locus_tag "TCEAL3"/note > "Transcription elongation factor A protein-like 3 > (TCEA-like protein 3) (Transcription elongation factor S- > II protein-like 3). [Source:Uniprot/SWISSPROT;Acc:Q969E4]"mRNA > join(933892..934157,935045..935114,935484..936368)/gene > "ENSG00000196507"/note "transcript_id=ENST00000372628"CDS > 935506..936108/gene "ENSG00000196507"/protein_id > "ENSP00000361711"/note "transcript_id=ENST00000372628"/db_xref > "HGNC:TCEAL3"/db_xref "CCDS:CCDS14511.1"/db_xref > "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref > "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref > "RefSeq_peptide:NP_001006934.1"/db_xref > "RefSeq_peptide:NP_116315.1"/db_xref "RefSeq_dna:NM_001006933"/db_xref > "RefSeq_dna:NM_032926"/db_xref > "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref > "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref > "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref > "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref > "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-002"/db_xref > "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref > "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref > "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref > "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref > "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref > "AFFY_HG_U133B:227279_at"/db_xref > "AFFY_HG_U133_Plus_2:227279_at"/db_xref > "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref > "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref > "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref > "OTTP:59471"/db_xref "OTTP:OTTHUMP00000023758"/db_xref > "OTTT:OTTHUMT00000057737"/db_xref > "shares_CDS_with_ENST:ENST00000243286"/db_xref > "shares_CDS_with_ENST:ENST00000372627"/translation > "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC > EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA > EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG > GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA > join(934347..934511,935045..935114,935479..936367)/gene > "ENSG00000196507"/note "transcript_id=ENST00000243286"CDS > 935506..936108/gene "ENSG00000196507"/protein_id > "ENSP00000243286"/note "transcript_id=ENST00000243286"/db_xref > "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref > "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref > "RefSeq_peptide:NP_001006934.1"/db_xref > "RefSeq_peptide:NP_116315.1"/db_xref > "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref > "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref > "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref > "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref > "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL3-201"/db_xref > "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref > "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref > "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref > "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref > "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref > "AFFY_HG_U133B:227279_at"/db_xref > "AFFY_HG_U133_Plus_2:227279_at"/db_xref > "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref > "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref > "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref > "shares_CDS_with_OTTT:TCEAL3-001"/db_xref > "shares_CDS_with_OTTT:TCEAL3-002"/translation > "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC > EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA > EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG > GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA > join(934406..934499,935045..935114,935479..936367)/gene > "ENSG00000196507"/note "transcript_id=ENST00000372627"CDS > 935506..936108/gene "ENSG00000196507"/protein_id > "ENSP00000361710"/note "transcript_id=ENST00000372627"/db_xref > "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref > "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref > "RefSeq_peptide:NP_001006934.1"/db_xref > "RefSeq_peptide:NP_116315.1"/db_xref > "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref > "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref > "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref > "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref > "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref > "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref > "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-001"/db_xref > "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref > "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref > "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref > "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref > "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref > "AFFY_HG_U133B:227279_at"/db_xref > "AFFY_HG_U133_Plus_2:227279_at"/db_xref > "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref > "AFFY_HuEx_1_0_st_v2:3985508"/db_xref > "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref > "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref > "OTTT:OTTHUMT00000057736"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref > "shares_CDS_with_OTTT:TCEAL3-001"/db_xref > "shares_CDS_with_OTTT:TCEAL3-002"/translation > "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC > EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA > EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG > GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"gene 955161..957387/gene > ENSG00000172465/locus_tag "TCEAL1"/note "transcription elongation > factor A (SII)-like 1 > [Source:RefSeq_peptide;Acc:NP_001006641]"mRNA > join(955161..955234,955935..956002,956326..957387)/gene > "ENSG00000172465"/note "transcript_id=ENST00000372626"CDS > 956358..956837/gene "ENSG00000172465"/protein_id > "ENSP00000361709"/note "transcript_id=ENST00000372626"/db_xref > "HGNC:TCEAL1"/db_xref "CCDS:CCDS35358.1"/db_xref > "RefSeq_peptide:NP_001006640.1"/db_xref > "RefSeq_peptide:NP_001006641.1"/db_xref > "RefSeq_peptide:NP_004771.2"/db_xref "RefSeq_dna:NM_001006639"/db_xref > "RefSeq_dna:NM_001006640"/db_xref "RefSeq_dna:NM_004780"/db_xref > "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref > "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref > "AgilentProbe:A_32_P498070"/db_xref "GO:GO:0005515"/db_xref > "HGNC_curated_transcript:TCEAL1-001"/db_xref > "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref > "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref > "AFFY_HG_U133A_2:204045_at"/db_xref > "AFFY_HG_U133_Plus_2:204045_at"/db_xref > "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016567"/db_xref > "AFFY_HuEx_1_0_st_v2:4016569"/db_xref > "AFFY_HuGeneFL:M99701_at"/db_xref > "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref > "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref > "Illumina_V2:ILMN_23088"/db_xref "Illumina_V2:ILMN_28868"/db_xref > "OTTT:OTTHUMT00000058903"/db_xref "OTTT:OTTHUMT00000058904"/db_xref > "OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:TCEAL1-001"/db_xref > "shares_CDS_with_OTTT:TCEAL1-002"/db_xref > "shares_CDS_with_OTTT:TCEAL1-003"/translation > "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS > EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF > KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA > join(955405..955466,955935..956002,956326..957387)/gene > "ENSG00000172465"/note "transcript_id=ENST00000372624"CDS > 956358..956837/gene "ENSG00000172465"/protein_id > "ENSP00000361707"/note "transcript_id=ENST00000372624"/db_xref > "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref > "RefSeq_peptide:NP_001006641.1"/db_xref > "RefSeq_peptide:NP_004771.2"/db_xref > "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref > "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref > "AgilentProbe:A_32_P498070"/db_xref > "HGNC_automatic_transcript:TCEAL1-201"/db_xref > "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref > "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref > "AFFY_HG_U133A_2:204045_at"/db_xref > "AFFY_HG_U133_Plus_2:204045_at"/db_xref > "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016567"/db_xref > "AFFY_HuEx_1_0_st_v2:4016569"/db_xref > "AFFY_HuGeneFL:M99701_at"/db_xref > "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref > "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref > "Illumina_V2:ILMN_23088"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:TCEAL1-001"/db_xref > "shares_CDS_with_OTTT:TCEAL1-002"/db_xref > "shares_CDS_with_OTTT:TCEAL1-003"/translation > "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS > EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF > KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA > join(955405..955466,955935..956014,956326..957387)/gene > "ENSG00000172465"/note "transcript_id=ENST00000372625"CDS > 956358..956837/gene "ENSG00000172465"/protein_id > "ENSP00000361708"/note "transcript_id=ENST00000372625"/db_xref > "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref > "RefSeq_peptide:NP_001006641.1"/db_xref > "RefSeq_peptide:NP_004771.2"/db_xref > "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref > "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref > "HGNC_automatic_transcript:TCEAL1-202"/db_xref > "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref > "UniGene:Hs.95243"/db_xref "AFFY_HG_Focus:204045_at"/db_xref > "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref > "AFFY_HG_U133_Plus_2:204045_at"/db_xref > "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref > "AFFY_HuEx_1_0_st_v2:4016567"/db_xref > "AFFY_HuEx_1_0_st_v2:4016569"/db_xref > "AFFY_HuGeneFL:M99701_at"/db_xref > "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref > "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref > "Illumina_V2:ILMN_23088"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref > "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref > "shares_CDS_with_OTTT:TCEAL1-001"/db_xref > "shares_CDS_with_OTTT:TCEAL1-002"/db_xref > "shares_CDS_with_OTTT:TCEAL1-003"/translation > "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS > EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF > KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"gene > complement(978174..978547)/gene ENSG00000180284/locus_tag > "AL049610.9"misc_RNA join(complement(978422..978547), > complement(978174..978419))/gene "ENSG00000180284"/db_xref > "AgilentProbe:A_24_P349428"/db_xref > "Clone_based_ensembl_transcri:AL049610.9-201"/db_xref > "UniGene:Hs.712229"/note "pseudogene"/note > "transcript_id=ENST00000312731"exon complement(5148..5254)/note > "exon_id=ENSE00001396941"exon 32225..32681/note > "exon_id=ENSE00001553787"exon 40223..40290/note > "exon_id=ENSE00001318862"exon 39571..39658/note > "exon_id=ENSE00001520517"exon 38853..38993/note > "exon_id=ENSE00001520520"exon 40978..44173/note > "exon_id=ENSE00001435544"exon 40630..40707/note > "exon_id=ENSE00001296863"exon 38617..38993/note > "exon_id=ENSE00001322878"exon 74258..74352/note > "exon_id=ENSE00001458492"exon 47398..47532/note > "exon_id=ENSE00001359890"exon 75140..79981/note > "exon_id=ENSE00001458491"exon 72535..72615/note > "exon_id=ENSE00001038238"exon 74026..74137/note > "exon_id=ENSE00001458493"exon 47167..47262/note > "exon_id=ENSE00001359898"exon 75140..78879/note > "exon_id=ENSE00001458499"exon 99642..99712/note > "exon_id=ENSE00001501273"exon 112108..113045/note > "exon_id=ENSE00001559133"exon 113050..113109/note > "exon_id=ENSE00001501266"exon 113185..113253/note > "exon_id=ENSE00001501264"exon 113254..113638/note > "exon_id=ENSE00001547725"exon 114269..114828/note > "exon_id=ENSE00001549427"exon 123275..123510/note > "exon_id=ENSE00001559090"exon 122692..122931/note > "exon_id=ENSE00001563701"exon complement(123532..123603)/note > "exon_id=ENSE00001501262"exon 123970..124556/note > "exon_id=ENSE00001557597"exon 124837..125403/note > "exon_id=ENSE00001550417"exon 125910..126001/note > "exon_id=ENSE00001552084"exon 126004..126327/note > "exon_id=ENSE00001549044"exon 126383..127532/note > "exon_id=ENSE00001556456"exon 127754..127840/note > "exon_id=ENSE00001562374"exon 127842..127907/note > "exon_id=ENSE00001501259"exon 129354..129411/note > "exon_id=ENSE00001501257"exon 129412..129481/note > "exon_id=ENSE00001501248"exon 129482..129726/note > "exon_id=ENSE00001554809"exon 131073..132579/note > "exon_id=ENSE00001556308"exon complement(132605..133087)/note > "exon_id=ENSE00001553181"exon 133182..134268/note > "exon_id=ENSE00001547959"exon complement(134334..134386)/note > "exon_id=ENSE00001501243"exon 135559..135629/note > "exon_id=ENSE00001501240"exon 136559..136627/note > "exon_id=ENSE00001501235"exon 263713..264741/note > "exon_id=ENSE00000675363"exon 333902..334513/note > "exon_id=ENSE00001556141"exon complement(389101..389720)/note > "exon_id=ENSE00001458479"exon complement(390537..390681)/note > "exon_id=ENSE00001105457"exon complement(390083..390172)/note > "exon_id=ENSE00001105455"exon complement(395306..395427)/note > "exon_id=ENSE00001564718"exon complement(419437..419535)/note > "exon_id=ENSE00001458464"exon complement(409839..409943)/note > "exon_id=ENSE00001322720"exon complement(404055..404187)/note > "exon_id=ENSE00001302178"exon complement(406454..406509)/note > "exon_id=ENSE00001293836"exon complement(402265..402441)/note > "exon_id=ENSE00001458442"exon complement(406025..406083)/note > "exon_id=ENSE00001314340"exon complement(405800..405915)/note > "exon_id=ENSE00001325188"exon complement(406204..406311)/note > "exon_id=ENSE00001313270"exon complement(410050..410133)/note > "exon_id=ENSE00001303810"exon complement(411156..411324)/note > "exon_id=ENSE00001327556"exon complement(419437..419540)/note > "exon_id=ENSE00001520502"exon complement(407017..407053)/note > "exon_id=ENSE00001322569"exon complement(409445..409514)/note > "exon_id=ENSE00001308091"exon complement(405001..405073)/note > "exon_id=ENSE00001293474"exon complement(406589..406657)/note > "exon_id=ENSE00001301210"exon complement(402682..402742)/note > "exon_id=ENSE00001327914"exon complement(409201..409289)/note > "exon_id=ENSE00001292623"exon complement(409634..409714)/note > "exon_id=ENSE00001291407"exon complement(410783..410936)/note > "exon_id=ENSE00001311406"exon complement(408696..408805)/note > "exon_id=ENSE00001309255"exon complement(405662..405704)/note > "exon_id=ENSE00000979224"exon 413637..415717/note > "exon_id=ENSE00001547073"exon complement(482560..482652)/note > "exon_id=ENSE00001438555"exon complement(532453..533340)/note > "exon_id=ENSE00001554209"exon 542590..543636/note > "exon_id=ENSE00001458417"exon 542123..542205/note > "exon_id=ENSE00000674092"exon 541565..541679/note > "exon_id=ENSE00001458401"exon 542590..543540/note > "exon_id=ENSE00001458400"exon complement(581519..581634)/note > "exon_id=ENSE00001520463"exon complement(579439..580458)/note > "exon_id=ENSE00001419203"exon complement(581046..581118)/note > "exon_id=ENSE00001263715"exon complement(580331..580420)/note > "exon_id=ENSE00001458382"exon complement(580100..580231)/note > "exon_id=ENSE00001458381"exon complement(585013..585759)/note > "exon_id=ENSE00001558162"exon complement(585929..586022)/note > "exon_id=ENSE00001556744"exon complement(600132..601031)/note > "exon_id=ENSE00001458378"exon complement(601716..601783)/note > "exon_id=ENSE00001458379"exon complement(603114..603313)/note > "exon_id=ENSE00001458380"exon complement(637301..637458)/note > "exon_id=ENSE00001458422"exon complement(637337..637448)/note > "exon_id=ENSE00001458367"exon complement(635795..636422)/note > "exon_id=ENSE00001458371"exon complement(636799..636874)/note > "exon_id=ENSE00001038555"exon complement(635943..636422)/note > "exon_id=ENSE00001458366"exon 657818..658766/note > "exon_id=ENSE00001325535"exon 657818..658529/note > "exon_id=ENSE00001458343"exon 657364..657481/note > "exon_id=ENSE00001305966"exon 657418..657481/note > "exon_id=ENSE00001458345"exon 656670..656745/note > "exon_id=ENSE00001458347"exon 656678..656745/note > "exon_id=ENSE00001291638"exon complement(673903..674170)/note > "exon_id=ENSE00001538428"exon 683524..683602/note > "exon_id=ENSE00001318428"exon 682893..683047/note > "exon_id=ENSE00001292620"exon 684056..684892/note > "exon_id=ENSE00001458330"exon 703951..704512/note > "exon_id=ENSE00001436496"exon 703357..703547/note > "exon_id=ENSE00001458275"exon 702848..703054/note > "exon_id=ENSE00001458277"exon 702781..703054/note > "exon_id=ENSE00001375610"exon 703951..704518/note > "exon_id=ENSE00001458290"exon 702767..703054/note > "exon_id=ENSE00001458297"exon 703469..703547/note > "exon_id=ENSE00001416044"exon 703904..704501/note > "exon_id=ENSE00001458276"exon 703904..704509/note > "exon_id=ENSE00001105579"exon complement(826191..829316)/note > "exon_id=ENSE00001458270"exon complement(845811..845930)/note > "exon_id=ENSE00001183586"exon complement(826195..827267)/note > "exon_id=ENSE00001173849"exon complement(843815..843966)/note > "exon_id=ENSE00001183584"exon 903535..903654/note > "exon_id=ENSE00001183544"exon 911932..912065/note > "exon_id=ENSE00001520388"exon 913090..913956/note > "exon_id=ENSE00001458264"exon 912660..912732/note > "exon_id=ENSE00001520387"exon 913090..914166/note > "exon_id=ENSE00001520386"exon 912660..912742/note > "exon_id=ENSE00001183536"exon 902911..902973/note > "exon_id=ENSE00001458265"exon 912066..912201/note > "exon_id=ENSE00001183538"exon 933892..934157/note > "exon_id=ENSE00001458260"exon 935484..936368/note > "exon_id=ENSE00001458259"exon 935479..936367/note > "exon_id=ENSE00000840307"exon 934406..934499/note > "exon_id=ENSE00001253340"exon 935045..935114/note > "exon_id=ENSE00001253332"exon 934347..934511/note > "exon_id=ENSE00001458257"exon 955405..955466/note > "exon_id=ENSE00001458249"exon 955161..955234/note > "exon_id=ENSE00001458252"exon 956326..957387/note > "exon_id=ENSE00001458247"exon 955935..956002/note > "exon_id=ENSE00001406936"exon 955935..956014/note > "exon_id=ENSE00001458248"exon complement(978174..978419)/note > "exon_id=ENSE00001250433"exon complement(978422..978547)/note > "exon_id=ENSE00001250442"STS complement(22038..22346)/standard_name > "SHGC-143390"/db_xref "UniSTS_NUM:185057"/db_xref > "UniSTS:SHGC-143390"/note "map_weight=1"STS > complement(43711..43868)/standard_name "RH78520"/db_xref > "UniSTS_NUM:73812"/db_xref "UniSTS:RH78520"/db_xref > "GM99-GB4:stSG41780"/note "map_weight=1"STS > complement(49890..50031)/standard_name "A008N06"/db_xref > "UniSTS_NUM:69104"/db_xref "UniSTS:A008N06"/note "map_weight=1"STS > complement(78623..78780)/standard_name "DXS7007E"/db_xref > "UniSTS_NUM:87907"/db_xref "UniSTS:DXS7007E"/db_xref > "WUSTL-X:sWXD2417"/note "map_weight=1"STS > complement(126684..126809)/standard_name "DXS7692"/db_xref > "UniSTS_NUM:22137"/db_xref "UniSTS:L41751"/db_xref > "UniSTS:DXS7692"/db_xref "WUSTL-X:sWXD1549"/note "map_weight=1"STS > complement(126736..126835)/standard_name "L47999"/db_xref > "UniSTS_NUM:32118"/db_xref "UniSTS:L47999"/db_xref > "WUSTL-X:sWXD1440"/note "map_weight=1"STS > complement(211742..211821)/standard_name "RH93084"/db_xref > "UniSTS_NUM:88543"/db_xref "UniSTS:RH93084"/db_xref > "GM99-GB4:stSG48268"/note "map_weight=1"STS > complement(238085..238337)/standard_name "REN69440"/db_xref > "UniSTS_NUM:394240"/db_xref "UniSTS:REN69440"/note "map_weight=3"STS > complement(265241..265340)/standard_name "WI-16593"/db_xref > "UniSTS_NUM:77493"/db_xref "UniSTS:T40480"/db_xref > "UniSTS:WI-16593"/note "map_weight=1"STS > complement(290665..290925)/standard_name "STS-N47340"/db_xref > "UniSTS_NUM:24198"/db_xref "UniSTS:STS-N47340"/note > "map_weight=1"STS complement(290723..290889)/standard_name > "RH45776"/db_xref "UniSTS_NUM:47099"/db_xref > "UniSTS:RH45776"/db_xref "GM99-GB4:stSG21435"/note "map_weight=1"STS > complement(331700..331780)/standard_name "L77850"/db_xref > "UniSTS_NUM:53608"/db_xref "UniSTS:L77850"/db_xref > "WUSTL-X:sWXD2841"/note "map_weight=1"STS > complement(389114..389226)/standard_name "RH18267"/db_xref > "UniSTS_NUM:60599"/db_xref "UniSTS:RH18267"/db_xref > "GM99-GB4:stSG9586"/note "map_weight=1"STS > complement(402304..402528)/standard_name "RH79750"/db_xref > "UniSTS_NUM:88517"/db_xref "UniSTS:RH79750"/db_xref > "GM99-GB4:sts-AA010600"/note "map_weight=1"STS > complement(402365..402517)/standard_name "RH102997"/db_xref > "UniSTS_NUM:97331"/db_xref "UniSTS:RH102997"/db_xref > "GM99-GB4:stSG54822"/note "map_weight=1"STS > complement(429978..430117)/standard_name "DXS8350"/db_xref > "UniSTS_NUM:80166"/db_xref "UniSTS:DXS8350"/db_xref > "UniSTS:L41954"/db_xref "WUSTL-X:sWXD1283"/note "map_weight=1"STS > complement(451418..451578)/standard_name "L77848"/db_xref > "UniSTS_NUM:23678"/db_xref "UniSTS:L77848"/db_xref > "WUSTL-X:sWXD2804"/note "map_weight=1"STS > complement(513264..513554)/standard_name "GDB:315297"/db_xref > "UniSTS_NUM:156514"/db_xref "UniSTS:GDB:315297"/note > "map_weight=1"STS complement(543431..543624)/standard_name > "RH80982"/db_xref "UniSTS_NUM:92748"/db_xref > "UniSTS:RH80982"/db_xref "GM99-GB4:sts-T59331"/note > "map_weight=1"STS complement(543471..543550)/standard_name > "RH46879"/db_xref "UniSTS_NUM:24442"/db_xref > "UniSTS:RH46879"/db_xref "GM99-GB4:stSG25760"/note "map_weight=1"STS > complement(579449..579628)/standard_name "RH35755"/db_xref > "UniSTS_NUM:71842"/db_xref "UniSTS:RH35755"/db_xref > "GM99-GB4:stSG1764"/note "map_weight=1"STS > complement(579510..579715)/standard_name "A002R41"/db_xref > "UniSTS_NUM:5253"/db_xref "UniSTS:A002R41"/note "map_weight=1"STS > complement(579804..579931)/standard_name "STS-R85811"/db_xref > "UniSTS_NUM:50348"/db_xref "UniSTS:STS-R85811"/note > "map_weight=1"STS complement(635821..635946)/standard_name > "WI-15922"/db_xref "UniSTS_NUM:62839"/db_xref > "UniSTS:WI-15922"/db_xref "UniSTS:G23964"/db_xref > "UniSTS:R43117"/note "map_weight=1"STS > complement(649415..649545)/standard_name "G22062"/db_xref > "UniSTS_NUM:66864"/db_xref "UniSTS:G22062"/note "map_weight=1"STS > complement(658543..658670)/standard_name "RH12449"/db_xref > "UniSTS_NUM:76451"/db_xref "UniSTS:RH12449"/db_xref > "GM99-GB4:stSG3774"/note "map_weight=1"STS > complement(684688..684818)/standard_name "A006A03"/db_xref > "UniSTS_NUM:41216"/db_xref "UniSTS:A006A03"/note "map_weight=1"STS > complement(684688..684818)/standard_name "G20641"/db_xref > "UniSTS_NUM:41217"/db_xref "UniSTS:G20641"/note "map_weight=1"STS > complement(703954..704452)/standard_name "141173"/db_xref > "UniSTS_NUM:141173"/note "map_weight=1"STS > complement(704257..704403)/standard_name "DXS6984E"/db_xref > "UniSTS_NUM:2498"/db_xref "UniSTS:DXS6984E"/db_xref > "GM99-GB4:stSG2932"/note "map_weight=1"STS > complement(704291..704471)/standard_name "STS-M38188"/db_xref > "UniSTS_NUM:60882"/db_xref "UniSTS:STS-M38188"/note > "map_weight=1"STS complement(704352..704489)/standard_name > "D5S2593"/db_xref "UniSTS_NUM:32572"/db_xref > "UniSTS:D5S2593"/db_xref "UniSTS:G13550"/note "map_weight=1"STS > complement(732457..732578)/standard_name "AL035140"/db_xref > "UniSTS_NUM:94651"/db_xref "UniSTS:AL035140"/note "map_weight=1"STS > complement(754777..754899)/standard_name "AL035146"/db_xref > "UniSTS_NUM:94658"/db_xref "UniSTS:AL035146"/note "map_weight=1"STS > complement(792227..792346)/standard_name "AF020181"/db_xref > "UniSTS_NUM:39479"/db_xref "UniSTS:AF020181"/db_xref > "WUSTL-X:sWXD3585"/note "map_weight=1"STS > complement(796966..797049)/standard_name "L77845"/db_xref > "UniSTS_NUM:57902"/db_xref "UniSTS:L77845"/db_xref > "WUSTL-X:sWXD2783"/note "map_weight=1"STS > complement(803577..803776)/standard_name "DXS1106"/db_xref > "UniSTS_NUM:30651"/db_xref "UniSTS:DXS1106"/db_xref > "GM99-GB4:AFM263we1"/db_xref "TNG:SHGC-1092"/note "map_weight=1"STS > complement(803580..803758)/standard_name "DXS1106"/db_xref > "UniSTS_NUM:63232"/db_xref "UniSTS:Z17276"/db_xref > "UniSTS:DXS1106"/db_xref "Genethon:AFM263we1"/db_xref > "WUSTL-X:sWXD672"/note "map_weight=1"STS > complement(804260..804395)/standard_name "AF020152"/db_xref > "UniSTS_NUM:45420"/db_xref "UniSTS:AF020152"/db_xref > "WUSTL-X:sWXD3586"/note "map_weight=1"STS > complement(853592..853826)/standard_name "DXS8096"/db_xref > "UniSTS_NUM:21236"/db_xref "UniSTS:DXS8096"/db_xref > "UniSTS:Z51652"/db_xref "GM99-G3:AFMa051tc5"/db_xref > "SHGC-G3:SHGC-21230"/note "map_weight=1"STS > complement(853592..853864)/standard_name "SHGC-150960"/db_xref > "UniSTS_NUM:173428"/db_xref "UniSTS:SHGC-150960"/note > "map_weight=1"STS complement(906210..906384)/standard_name > "AL008935"/db_xref "UniSTS_NUM:79896"/db_xref "UniSTS:AL008935"/note > "map_weight=1"STS complement(914019..914122)/standard_name > "STS-W88790"/db_xref "UniSTS_NUM:82788"/db_xref > "UniSTS:STS-W88790"/note "map_weight=1"STS > complement(914808..914927)/standard_name "SHGC-52701"/db_xref > "UniSTS_NUM:11495"/db_xref "UniSTS:SHGC-52701"/db_xref > "UniSTS:G36701"/note "map_weight=1"STS > complement(916610..916774)/standard_name "RH45868"/db_xref > "UniSTS_NUM:63171"/db_xref "UniSTS:RH45868"/db_xref > "GM99-GB4:stSG21595"/note "map_weight=1"STS > complement(936075..936201)/standard_name "RH78743"/db_xref > "UniSTS_NUM:4877"/db_xref "UniSTS:RH78743"/db_xref > "GM99-GB4:stSG42368"/note "map_weight=2"STS > complement(936198..936325)/standard_name "SHGC-34973"/db_xref > "UniSTS_NUM:23617"/db_xref "UniSTS:SHGC-34973"/db_xref > "UniSTS:G29704"/note "map_weight=1"STS > complement(939033..939162)/standard_name "RH17462"/db_xref > "UniSTS_NUM:41304"/db_xref "UniSTS:H03933"/db_xref > "UniSTS:RH17462"/note "map_weight=1"STS > complement(939050..939161)/standard_name "A005E02"/db_xref > "UniSTS_NUM:56778"/db_xref "UniSTS:G26235"/db_xref > "UniSTS:R62801"/db_xref "UniSTS:A005E02"/db_xref > "WI-RH:TIGR-A005E02"/note "map_weight=1"STS > complement(956876..956996)/standard_name "STS-M99701"/db_xref > "UniSTS_NUM:21153"/db_xref "UniSTS:STS-M99701"/note > "map_weight=1"STS complement(957185..957362)/standard_name > "RH80258"/db_xref "UniSTS_NUM:91622"/db_xref > "UniSTS:RH80258"/db_xref "GM99-GB4:sts-AA040895"/note > "map_weight=1"misc_feature 1..109496/note "contig > AL035427.17.1.161273 51778..161273(1)"misc_feature 109497..189301/note > "contig AL590407.8.1.81805 2001..81805(1)"misc_feature > 189302..225201/note "contig Z68871.2.1.37899 1..35900(-1)"misc_feature > 225202..230371/note "contig AL669904.1.1.5270 > 101..5270(1)"misc_feature 230372..267593/note "contig > Z95624.1.1.37322 1..37222(-1)"misc_feature 267594..267689/note > "contig AL645812.1.1.195 100..195(1)"misc_feature 267690..282719/note > "contig Z93943.1.1.15130 1..15030(-1)"misc_feature > 282720..327653/note "contig Z75895.1.1.45038 1..44934(-1)"misc_feature > 327654..365457/note "contig Z73361.1.1.40509 > 1..37804(-1)"misc_feature 365458..401071/note "contig > AL008708.4.1.35714 101..35714(1)"misc_feature 401072..438735/note > "contig Z75746.1.1.37764 1..37664(-1)"misc_feature 438736..478402/note > "contig Z85997.1.1.40600 1..39667(-1)"misc_feature > 478403..547950/note "contig AL035494.8.1.69648 > 101..69648(1)"misc_feature 547951..564664/note "contig > Z81014.1.1.16814 1..16714(-1)"misc_feature 564665..605385/note > "contig Z68694.1.1.40822 1..40721(-1)"misc_feature 605386..645869/note > "contig AL133348.8.1.40584 101..40584(1)"misc_feature > 645870..689721/note "contig Z92846.2.1.43952 > 101..43952(1)"misc_feature 689722..749434/note "contig > AL606763.6.1.61713 2001..61713(1)"misc_feature 749435..754942/note > "contig AL079333.8.1.7508 2001..7508(1)"misc_feature > 754943..807439/note "contig AL117327.5.1.52597 > 101..52597(1)"misc_feature 807440..848370/note "contig > Z69733.1.1.41031 1..40931(-1)"misc_feature 848371..875749/note > "contig AL035444.9.1.27479 101..27479(1)"misc_feature > 875750..897175/note "contig AL021308.1.1.21526 > 101..21526(1)"misc_feature 897176..939757/note "contig > Z73965.1.1.42686 1..42582(-1)"misc_feature 939758..944624/note > "contig Z68327.1.1.4968 1..4867(-1)"misc_feature 944625..1000000/note > "contig AL049610.9.1.100269 99..55474(1)" > Stack trace follows .... > > > at > org.biojavax.bio.seq.io.GenbankFormat.readRichSequence( > GenbankFormat.java:462) > at > org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) > ... 1 more > > > _______________________________________________ > Biojava-l mailing list - Biojava-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > > > > > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holland at eaglegenomics.com http://www.eaglegenomics.com/ From pzgyuanf at gmail.com Sat Nov 15 15:46:30 2008 From: pzgyuanf at gmail.com (pprun) Date: Sat, 15 Nov 2008 15:46:30 -0000 Subject: [Biojava-l] An Exception Has Occurred During Parsing ensembl Genbank file Homo_sapiens.0.dat In-Reply-To: References: <491EEA74.4080902@gmail.com> Message-ID: <491EEEC0.7090209@gmail.com> It is too large to send it by email, the exactly file name is: Homo_sapiens.0.dat The exception took place when first X Chr. sequence was encountered. Hope this can help a bit. - Pprun Richard Holland ??: > There are many files on that site. I need to know which specific one > you are working with so that I can also attempt to parse it with some > debugging options turned on. > > Could you attach the file you are using to an email if possible? > > cheers, > Richard > > > 2008/11/15 pprun : > >> Hi Richard, >> Did the original file you mean is the ensembl genbank file? >> If so, you can get it from ensembl website >> ftp://ftp.ensembl.org/pub/current_genbank/homo_sapiens/ >> >> >> >> Richard Holland ??: >> >> This exception occurs when the Genbank file contains a db_xref entry >> that does not follow the format "Type:Accession". >> >> It's hard to tell if this is the problem here without seeing the original >> file. >> >> cheers, >> Richard >> >> 2008/11/15 pprun : >> >> >> Environments: >> ------------- >> Biojava: 1.6 >> Java: 1.6.0_10; Java HotSpot(TM) Client VM 11.0-b15 >> System: Linux version 2.6.24-21-generic running on i386; UTF-8; zh_CN >> >> >> The detail: >> -------------- >> Format_object=org.biojavax.bio.seq.io.GenbankFormat >> Accession=chromosome:NCBI36:X:101815144:102815143:1 >> Id=null >> Comments=Bad dbxref >> Parse_block=FEATURES Location/Qualifierssource 1..1000000/organism >> "Homo sapiens"/db_xref "taxon:9606"gene complement(5148..5254)/gene >> ENSG00000193147/locus_tag "AL035427.17"misc_RNA >> complement(5148..5254)/gene "ENSG00000193147"/db_xref >> "Clone_based_ensembl_transcri:AL035427.17-201"/db_xref >> "RFAM:RF00026"/db_xref "AFFY_HuEx_1_0_st_v2:3985294"/note >> "snRNA"/note "transcript_id=ENST00000348857"gene 32225..32681/gene >> ENSG00000220050/locus_tag "RP4-769N13.2"misc_RNA 32225..32681/gene >> "ENSG00000220050"/db_xref "AgilentProbe:A_32_P940920"/db_xref >> "Clone_based_vega_transcript:RP4-769N13.2-001"/db_xref >> "OTTT:OTTHUMT00000057625"/note "processed_pseudogene"/note >> "transcript_id=ENST00000405532"gene 38617..44173/gene >> ENSG00000158301/locus_tag "GPRASP2"/note "G-protein coupled >> receptor-associated sorting >> protein 2 (GASP-2). [Source:Uniprot/SWISSPROT;Acc:Q96D09]"mRNA >> join(38617..38993,40223..40290,40630..40707,40978..44173)/gene >> "ENSG00000158301"/note "transcript_id=ENST00000332262"CDS >> 41311..43827/gene "ENSG00000158301"/protein_id >> "ENSP00000339057"/note "transcript_id=ENST00000332262"/db_xref >> "HGNC:GPRASP2"/db_xref "CCDS:CCDS14501.1"/db_xref >> "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref >> "RefSeq_peptide:NP_001004051.1"/db_xref >> "RefSeq_peptide:NP_612446.1"/db_xref >> "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref >> "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref >> "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref >> "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref >> "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_curated_transcript:GPRASP2-001"/db_xref >> "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref >> "UniGene:Hs.603154"/db_xref "protein_id:AAH13576.1"/db_xref >> "protein_id:AAH36772.1"/db_xref "protein_id:BAC04010.1"/db_xref >> "protein_id:BAC04692.1"/db_xref "protein_id:CAI43060.1"/db_xref >> "AFFY_HG_U133B:228027_at"/db_xref >> "AFFY_HG_U133_Plus_2:228027_at"/db_xref >> "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016236"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016243"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016244"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016261"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016262"/db_xref >> "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref >> "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref >> "Illumina_V2:ILMN_8313"/db_xref "OTTT:OTTHUMT00000057626"/db_xref >> "shares_CDS_with_OTTT:GPRASP2-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057626"/translation >> "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA >> TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA >> RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES >> GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA >> SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA >> YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF >> YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW >> AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG >> SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF >> RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE >> IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR >> SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV >> CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK >> MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL >> IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"mRNA >> join(38853..38993,39571..39658,40223..40290,40630..40707, >> 40978..44173)/gene "ENSG00000158301"/note >> "transcript_id=ENST00000340885"CDS 41311..43827/gene >> "ENSG00000158301"/protein_id "ENSP00000342986"/note >> "transcript_id=ENST00000340885"/db_xref "CCDS:CCDS14501.1"/db_xref >> "Uniprot/SWISSPROT:GASP2_HUMAN"/db_xref >> "RefSeq_peptide:NP_001004051.1"/db_xref >> "RefSeq_peptide:NP_612446.1"/db_xref "RefSeq_dna:NM_001004051"/db_xref >> "RefSeq_dna:NM_138437"/db_xref >> "Uniprot/SPTREMBL:Q8N8W9_HUMAN"/db_xref "EntrezGene:GPRASP2"/db_xref >> "AgilentCGH:A_14_P118681"/db_xref "AgilentProbe:A_23_P408167"/db_xref >> "EMBL:AK092981"/db_xref "EMBL:AK096067"/db_xref >> "EMBL:AL035427"/db_xref "EMBL:BC013576"/db_xref >> "EMBL:BC036772"/db_xref "GO:GO:0005488"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_automatic_transcript:GPRASP2-201"/db_xref >> "IPI:IPI00069232.4"/db_xref "IPI:IPI00167622.1"/db_xref >> "UniGene:Hs.603154"/db_xref "UniGene:Hs.656888"/db_xref >> "protein_id:AAH13576.1"/db_xref "protein_id:AAH36772.1"/db_xref >> "protein_id:BAC04010.1"/db_xref "protein_id:BAC04692.1"/db_xref >> "protein_id:CAI43060.1"/db_xref "AFFY_HG_U133B:228027_at"/db_xref >> "AFFY_HG_U133_Plus_2:228027_at"/db_xref >> "AFFY_HG_U95B:43922_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016229"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016244"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016261"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016262"/db_xref >> "AFFY_U133_X3P:Hs.246112.2.A1_3p_at"/db_xref >> "Codelink:GE478120"/db_xref "Illumina_V1:GI_45238856-S"/db_xref >> "Illumina_V2:ILMN_8313"/translation >> "MTGAEIEPSAQAKPEKKAGEEVIAGPERENDVPLVVRPKVRTQA >> TTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDA >> RAVGGARSKTDAKAIPGARPKDEAQAWAQSEFGTEAVSQAEGVSQTNAVAWPLATAES >> GSVTKSKGLSMDRELVNVDAETFPGTQGQKGIQPWFGPGEETNMGSWCYSRPRAREEA >> SNESGFWSADETSTASSFWTGEETSVRSWPREESNTRSRHRAKHQTNPRSRPRSKQEA >> YVDSWSGSEDEASNPFSFWVGENTNNLFRPRVREEANIRSKLRTNREDCFESESEDEF >> YKQSWVLPGEEANSRFRHRDKEDPNTALKLRAQKDVDSDRVKQEPRFEEEVIIGSWFW >> AEKEASLEGGASAICESEPGTEEGAIGGSAYWAEEKSSLGAVAREEAKPESEEEAIFG >> SWFWDRDEACFDLNPCPVYKVSDRFRDAAEELNASSRPQTWDEVTVEFKPGLFHGVGF >> RSTSPFGIPEEASEMLEAKPKNLELSPEGEEQESLLQPDQPSPEFTFQYDPSYRSVRE >> IREHLRARESAESESWSCSCIQCELKIGSEEFEEFLLLMDKIRDPFIHEISKIAMGMR >> SASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIHMAPPYPNLNMIETFICQV >> CEETLAHSVDSLEQLTGIRMLRHLTMTIDYHTLIANYMSGFLSLLTTANARTKFHVLK >> MLLNLSENPAVAKKLFSAKALSIFVGLFNIEETNDNIQIVIKMFQNISNIIKSGKMSL >> IDDDFSLEPLISAFREFEELAKQLQAQIDNQNDPEVGQQS"gene 47167..79981/gene >> ENSG00000198908/locus_tag "BHLHB9"/note "Protein BHLHB9 (bHLHB9) >> (Transcription regulator of >> 60 kDa) (p60TRP). [Source:Uniprot/SWISSPROT;Acc:Q6PI77]"mRNA >> join(47167..47262,47398..47532,75140..78879)/gene >> "ENSG00000198908"/note "transcript_id=ENST00000372738"CDS >> 75437..77080/gene "ENSG00000198908"/protein_id >> "ENSP00000361823"/note "transcript_id=ENST00000372738"/db_xref >> "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref >> "RefSeq_peptide:NP_085142.1"/db_xref "RefSeq_dna:NM_030639"/db_xref >> "EntrezGene:BHLHB9"/db_xref "AgilentProbe:A_23_P308954"/db_xref >> "AgilentProbe:A_32_P348800"/db_xref >> "AgilentProbe:A_32_P796164"/db_xref >> "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref >> "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref >> "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref >> "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-002"/db_xref >> "IPI:IPI00513802.1"/db_xref "UniGene:Hs.4276"/db_xref >> "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref >> "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref >> "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref >> "AFFY_HG_U133A_2:213709_at"/db_xref >> "AFFY_HG_U133_Plus_2:213709_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3937803"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016264"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016266"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016274"/db_xref >> "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref >> "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref >> "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref >> "OTTT:OTTHUMT00000057631"/db_xref >> "shares_CDS_with_OTTT:BHLHB9-002"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057631"/translation >> "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA >> KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK >> NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK >> PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT >> IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ >> PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS >> TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP >> SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF >> HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA >> IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"mRNA >> join(47167..47262,47398..47532,75140..78879)/gene >> "ENSG00000198908"/note "transcript_id=ENST00000361229"CDS >> 75368..77080/gene "ENSG00000198908"/protein_id >> "ENSP00000354675"/note "transcript_id=ENST00000361229"/db_xref >> "HGNC:BHLHB9"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref >> "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref >> "AgilentProbe:A_23_P308954"/db_xref >> "AgilentProbe:A_32_P348800"/db_xref >> "AgilentProbe:A_32_P796164"/db_xref >> "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref >> "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref >> "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref >> "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_automatic_transcript:BHLHB9-201"/db_xref >> "IPI:IPI00513802.1"/db_xref "IPI:IPI00844393.1"/db_xref >> "UniGene:Hs.4276"/db_xref "protein_id:AAH41409.1"/db_xref >> "protein_id:AAQ12077.1"/db_xref "protein_id:BAB21792.1"/db_xref >> "protein_id:CAI43061.1"/db_xref "protein_id:EAW54726.1"/db_xref >> "AFFY_HG_U133A:213709_at"/db_xref "AFFY_HG_U133A_2:213709_at"/db_xref >> "AFFY_HG_U133_Plus_2:213709_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3937803"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016264"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016266"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016274"/db_xref >> "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref >> "Codelink:GE54272"/db_xref "Illumina_V1:GI_14769619-S"/db_xref >> "Illumina_V1:GI_39930462-S"/db_xref >> "Illumina_V2:ILMN_3098"/translation >> "DFDLGHIENQGQDWTGPYNWASTMAGTKNKTRAQAKTEKKAAIQ >> AKAGAEREATGVVRPVAKTRAKAKAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPK >> TLGKAMGDFTPKAGNESTSSTCKNEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKN >> DKPEIGAQVCAEELEPAAGADCKPRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSR >> IVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAE >> ENACSLPVATACRPSRNTRSCSQPIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFA >> CPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTL >> IESLLSFPSPEMRKKTVITLNPPSGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLK >> ILGQLTTDFVHHYIVANYFSELFHLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMK >> ALAALKLIFNQKEAKANLVSGVAIFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEI >> IETM"mRNA >> join(72535..72615,74026..74137,74258..74352,75140..79981)/gene >> "ENSG00000198908"/note "transcript_id=ENST00000372735"CDS >> 75437..77080/gene "ENSG00000198908"/protein_id >> "ENSP00000361820"/note "transcript_id=ENST00000372735"/db_xref >> "CCDS:CCDS14502.1"/db_xref "Uniprot/SWISSPROT:BHLH9_HUMAN"/db_xref >> "RefSeq_peptide:NP_085142.1"/db_xref "EntrezGene:BHLHB9"/db_xref >> "AgilentCGH:A_14_P200664"/db_xref "AgilentProbe:A_23_P308954"/db_xref >> "AgilentProbe:A_32_P348800"/db_xref >> "AgilentProbe:A_32_P796164"/db_xref >> "AgilentProbe:A_32_P907200"/db_xref "EMBL:AB051488"/db_xref >> "EMBL:AF547055"/db_xref "EMBL:AL035427"/db_xref >> "EMBL:BC041409"/db_xref "EMBL:CH471190"/db_xref >> "GO:GO:0005488"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BHLHB9-001"/db_xref >> "IPI:IPI00513802.1"/db_xref "UniGene:Hs.603894"/db_xref >> "protein_id:AAH41409.1"/db_xref "protein_id:AAQ12077.1"/db_xref >> "protein_id:BAB21792.1"/db_xref "protein_id:CAI43061.1"/db_xref >> "protein_id:EAW54726.1"/db_xref "AFFY_HG_U133A:213709_at"/db_xref >> "AFFY_HG_U133A_2:213709_at"/db_xref >> "AFFY_HG_U133_Plus_2:213709_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3937803"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016224"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016270"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016274"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016276"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016277"/db_xref >> "AFFY_U133_X3P:Hs.4276.0.S1_3p_at"/db_xref "Codelink:GE523488"/db_xref >> "Codelink:GE54272"/db_xref "Codelink:GE822399"/db_xref >> "Illumina_V1:GI_14769619-S"/db_xref >> "Illumina_V1:GI_39930462-S"/db_xref "Illumina_V2:ILMN_3098"/db_xref >> "OTTP:59431"/db_xref "OTTP:OTTHUMP00000023715"/db_xref >> "OTTT:OTTHUMT00000057630"/translation >> "MAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVVRPVAKTRAKA >> KAKTGSKTDAVAEMKAVSKNKVVAETKEGALSEPKTLGKAMGDFTPKAGNESTSSTCK >> NEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTKNDKPEIGAQVCAEELEPAAGADCK >> PRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPVSRIVKPQPVYEINEKNRPKDWSEVT >> IWPNAPAVTPAVLGFRSQAPSEASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQ >> PIPECRFDSDPCIQTIDEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKS >> TTDPLIHKIARIAMGVHNVHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPP >> SGDERQRKIELHVKHMCKETMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELF >> HLLSSGNCKTRNLVLKLLLNMSENPTAARDMINMKALAALKLIFNQKEAKANLVSGVA >> IFINIKEHIRKGSIVVVDHLSYNTLMAIFREVKEIIETM"gene 99642..99712/gene >> ENSG00000209002/locus_tag "AL035427.17"misc_RNA 99642..99712/gene >> "ENSG00000209002"/db_xref >> "Clone_based_ensembl_transcri:AL035427.17-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386267"gene >> 112108..113045/gene ENSG00000216245/locus_tag "RP11-522L3.1"misc_RNA >> 112108..113045/gene "ENSG00000216245"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.1-001"/db_xref >> "OTTT:OTTHUMT00000057652"/note "processed_pseudogene"/note >> "transcript_id=ENST00000404960"gene 113050..113109/gene >> ENSG00000208995/locus_tag "AL590407.8"misc_RNA 113050..113109/gene >> "ENSG00000208995"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386260"gene >> 113185..113253/gene ENSG00000208993/locus_tag "AL590407.8"misc_RNA >> 113185..113253/gene "ENSG00000208993"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386258"gene >> 113254..114828/gene ENSG00000218436/locus_tag "RP11-522L3.2"misc_RNA >> join(113254..113638,114269..114828)/gene "ENSG00000218436"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.2-001"/db_xref >> "OTTT:OTTHUMT00000057653"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403360"gene 122692..123510/gene >> ENSG00000220260/locus_tag "RP11-522L3.3"misc_RNA >> join(122692..122931,123275..123510)/gene "ENSG00000220260"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.3-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016279"/db_xref >> "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057654"/note >> "processed_pseudogene"/note "transcript_id=ENST00000407716"gene >> complement(123532..123603)/gene ENSG00000208991/locus_tag >> "AL590407.8"misc_RNA complement(123532..123603)/gene >> "ENSG00000208991"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386256"gene >> 123970..124556/gene ENSG00000219427/locus_tag "RP11-522L3.4"misc_RNA >> 123970..124556/gene "ENSG00000219427"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.4-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016279"/db_xref >> "AFFY_HuGene_1_0_st_v1:8174197"/db_xref "OTTT:OTTHUMT00000057655"/note >> "processed_pseudogene"/note "transcript_id=ENST00000406243"gene >> 124837..126001/gene ENSG00000218342/locus_tag "RP11-522L3.5"misc_RNA >> join(124837..125403,125910..126001)/gene "ENSG00000218342"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.5-001"/db_xref >> "OTTT:OTTHUMT00000057656"/note "processed_pseudogene"/note >> "transcript_id=ENST00000407350"gene 126004..126327/gene >> ENSG00000220461/locus_tag "RP11-522L3.6"misc_RNA 126004..126327/gene >> "ENSG00000220461"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.6-001"/db_xref >> "OTTT:OTTHUMT00000057657"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403529"gene 126383..127840/gene >> ENSG00000220086/locus_tag "RP11-522L3.7"misc_RNA >> join(126383..127532,127754..127840)/gene "ENSG00000220086"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.7-001"/db_xref >> "OTTT:OTTHUMT00000057648"/note "processed_pseudogene"/note >> "transcript_id=ENST00000405058"gene 127842..127907/gene >> ENSG00000208988/locus_tag "AL590407.8"misc_RNA 127842..127907/gene >> "ENSG00000208988"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386253"gene >> 129354..129411/gene ENSG00000208986/locus_tag "AL590407.8"misc_RNA >> 129354..129411/gene "ENSG00000208986"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref >> "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note >> "transcript_id=ENST00000386251"gene 129412..129481/gene >> ENSG00000208977/locus_tag "AL590407.8"misc_RNA 129412..129481/gene >> "ENSG00000208977"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/db_xref >> "AFFY_HuEx_1_0_st_v2:2778904"/note "Mt_tRNA_pseudogene"/note >> "transcript_id=ENST00000386242"gene 129482..132579/gene >> ENSG00000216547/locus_tag "RP11-522L3.8"misc_RNA >> join(129482..129726,131073..132579)/gene "ENSG00000216547"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.8-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:2778904"/db_xref "OTTT:OTTHUMT00000057649"/note >> "processed_pseudogene"/note "transcript_id=ENST00000402841"gene >> complement(132605..133087)/gene ENSG00000217506/locus_tag >> "RP11-522L3.9"misc_RNA complement(132605..133087)/gene >> "ENSG00000217506"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.9-001"/db_xref >> "OTTT:OTTHUMT00000057650"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403019"gene 133182..134268/gene >> ENSG00000218097/locus_tag "RP11-522L3.11"misc_RNA >> 133182..134268/gene "ENSG00000218097"/db_xref >> "Clone_based_vega_transcript:RP11-522L3.11-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016280"/db_xref >> "AFFY_HuGene_1_0_st_v1:8174199"/db_xref "OTTT:OTTHUMT00000057651"/note >> "processed_pseudogene"/note "transcript_id=ENST00000401627"gene >> complement(134334..134386)/gene ENSG00000208972/locus_tag >> "AL590407.8"misc_RNA complement(134334..134386)/gene >> "ENSG00000208972"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386237"gene >> 135559..135629/gene ENSG00000208969/locus_tag "AL590407.8"misc_RNA >> 135559..135629/gene "ENSG00000208969"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386234"gene >> 136559..136627/gene ENSG00000208964/locus_tag "AL590407.8"misc_RNA >> 136559..136627/gene "ENSG00000208964"/db_xref >> "Clone_based_ensembl_transcri:AL590407.8-201"/note >> "Mt_tRNA_pseudogene"/note "transcript_id=ENST00000386229"gene >> 263713..264741/gene ENSG00000102128/locus_tag "RAB40AL"/note >> "Ras-related protein Rab-40A-like (Ras-like GTPase). >> [Source:Uniprot/SWISSPROT;Acc:P0C0E4]"mRNA 263713..264741/gene >> "ENSG00000102128"/note "transcript_id=ENST00000218249"CDS >> 263760..264596/gene "ENSG00000102128"/protein_id >> "ENSP00000218249"/note "transcript_id=ENST00000218249"/db_xref >> "HGNC:RAB40AL"/db_xref "CCDS:CCDS35353.1"/db_xref >> "Uniprot/SWISSPROT:RB40L_HUMAN"/db_xref >> "RefSeq_peptide:NP_001027004.1"/db_xref >> "RefSeq_dna:NM_001031834"/db_xref "EntrezGene:RAB40AL"/db_xref >> "AgilentProbe:A_32_P88717"/db_xref "AgilentProbe:A_32_P88719"/db_xref >> "EMBL:BC101169"/db_xref "EMBL:BC101170"/db_xref >> "EMBL:BC101171"/db_xref "EMBL:BC101172"/db_xref >> "EMBL:Z95624"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref >> "GO:GO:0005739"/db_xref "GO:GO:0005886"/db_xref >> "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref >> "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref >> "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref >> "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40AL-001"/db_xref >> "IPI:IPI00555763.1"/db_xref "MIM_GENE:300405"/db_xref >> "UniGene:Hs.449517"/db_xref "protein_id:AAI01170.1"/db_xref >> "protein_id:AAI01171.1"/db_xref "protein_id:AAI01172.1"/db_xref >> "protein_id:AAI01173.1"/db_xref "protein_id:CAB09136.1"/db_xref >> "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref >> "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref >> "AFFY_HG_U133_Plus_2:215782_at"/db_xref >> "AFFY_HG_U95A:107_at"/db_xref "AFFY_HG_U95A:108_g_at"/db_xref >> "AFFY_HG_U95A:33477_at"/db_xref "AFFY_HG_U95Av2:107_at"/db_xref >> "AFFY_HG_U95Av2:108_g_at"/db_xref "AFFY_HG_U95Av2:33477_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985604"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985605"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016299"/db_xref >> "AFFY_HuGeneFL:Z95624_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref >> "Illumina_V2:ILMN_24932"/db_xref "OTTT:OTTHUMT00000057679"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057679"/db_xref >> "shares_CDS_with_OTTT:RAB40AL-001"/translation >> "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYS >> HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF >> EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN >> FNIIESFTELARIVLLRHRLNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIAL >> RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCK >> IS"gene 333902..334513/gene ENSG00000219659/locus_tag >> "LL0XNC01-73E8.1"misc_RNA 333902..334513/gene >> "ENSG00000219659"/db_xref >> "Clone_based_vega_transcript:LL0XNC01-73E8.1-001"/db_xref >> "OTTT:OTTHUMT00000057683"/note "processed_pseudogene"/note >> "transcript_id=ENST00000406951"gene complement(389101..390681)/gene >> ENSG00000133169/locus_tag "BEX1"/note "Protein BEX1 (Brain-expressed >> X-linked protein 1). >> [Source:Uniprot/SWISSPROT;Acc:Q9HBH7]"mRNA >> join(complement(390537..390681), >> complement(390083..390172),complement(389101..389720))/gene >> "ENSG00000133169"/note "transcript_id=ENST00000372728"CDS >> complement(389338..389715)/gene "ENSG00000133169"/protein_id >> "ENSP00000361813"/note "transcript_id=ENST00000372728"/db_xref >> "HGNC:BEX1"/db_xref "CCDS:CCDS35354.1"/db_xref >> "Uniprot/SWISSPROT:BEX1_HUMAN"/db_xref >> "RefSeq_peptide:NP_060946.3"/db_xref "RefSeq_dna:NM_018476"/db_xref >> "EntrezGene:BEX1"/db_xref "AgilentProbe:A_23_P159952"/db_xref >> "AgilentProbe:A_32_P168503"/db_xref "EMBL:AF183416"/db_xref >> "EMBL:AF220189"/db_xref "EMBL:AF237783"/db_xref >> "EMBL:AK290958"/db_xref "EMBL:AL008708"/db_xref >> "EMBL:AY833561"/db_xref "EMBL:BC126427"/db_xref >> "EMBL:BC126429"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0007275"/db_xref >> "GO:GO:0007399"/db_xref "GO:GO:0030154"/db_xref >> "HGNC_curated_transcript:BEX1-001"/db_xref "IPI:IPI00020533.4"/db_xref >> "MIM_GENE:300690"/db_xref "protein_id:AAF67654.1"/db_xref >> "protein_id:AAG09685.1"/db_xref "protein_id:AAG09752.1"/db_xref >> "protein_id:AAI26428.1"/db_xref "protein_id:AAI26430.1"/db_xref >> "protein_id:AAX40679.1"/db_xref "protein_id:BAF83647.1"/db_xref >> "protein_id:CAI42418.1"/db_xref "AFFY_HG_U133A:218332_at"/db_xref >> "AFFY_HG_U133A_2:218332_at"/db_xref >> "AFFY_HG_U133_Plus_2:218332_at"/db_xref >> "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985407"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985408"/db_xref >> "AFFY_U133_X3P:g8923715_3p_at"/db_xref "Codelink:GE82387"/db_xref >> "Illumina_V1:GI_15147227-S"/db_xref "Illumina_V2:ILMN_23116"/db_xref >> "OTTT:OTTHUMT00000058925"/db_xref >> "shares_CDS_with_OTTT:BEX1-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058925"/translation >> "MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYC >> VPRGNRRRFRVRQPILQYRWDMMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLS >> HSLRAVSTDPPHHDHHDEFCLMP"gene complement(395306..395427)/gene >> ENSG00000221010/locus_tag "AL008708.4"misc_RNA >> complement(395306..395427)/gene "ENSG00000221010"/db_xref >> "Clone_based_ensembl_transcri:AL008708.4-201"/note "miRNA"/note >> "transcript_id=ENST00000408083"gene complement(402265..419540)/gene >> ENSG00000147206/locus_tag "NXF3"/note "Nuclear RNA export factor 3 >> (TAP-like protein 3) >> (TAPL-3). [Source:Uniprot/SWISSPROT;Acc:Q9H4D5]"mRNA >> join(complement(419437..419535), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402682..402742), >> complement(402265..402441))/gene "ENSG00000147206"/note >> "transcript_id=ENST00000395065"CDS join(complement(419437..419464), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402731..402742))/gene >> "ENSG00000147206"/protein_id "ENSP00000378504"/note >> "transcript_id=ENST00000395065"/db_xref "CCDS:CCDS14503.1"/db_xref >> "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref >> "RefSeq_peptide:NP_071335.1"/db_xref "RefSeq_dna:NM_022052"/db_xref >> "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref >> "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref >> "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref >> "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref >> "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref >> "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003729"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0006810"/db_xref >> "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref >> "HGNC_curated_transcript:NXF3-001"/db_xref "IPI:IPI00004930.5"/db_xref >> "IPI:IPI00552760.2"/db_xref "MIM_GENE:300316"/db_xref >> "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref >> "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref >> "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref >> "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref >> "AFFY_HG_U133A:220110_s_at"/db_xref >> "AFFY_HG_U133A_2:220110_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref >> "AFFY_HG_U95E:89668_at"/db_xref >> "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref >> "Illumina_V1:GI_11545756-S"/db_xref "Illumina_V2:ILMN_19573"/db_xref >> "OTTT:OTTHUMT00000057684"/db_xref >> "shares_CDS_with_OTTT:NXF3-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057684"/translation >> "MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSS >> SHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRME >> GNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENA >> SIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQ >> EALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPG >> EKCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGS >> FFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCK >> FFKDSRNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLC >> FSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFT >> LVPTAFSSSVPAFSQEQQKMLPS"mRNA join(complement(419437..419540), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402682..402742), >> complement(402265..402441))/gene "ENSG00000147206"/note >> "transcript_id=ENST00000372709"CDS join(complement(419437..419539), >> complement(411156..411324),complement(410783..410936), >> complement(410050..410133),complement(409839..409943), >> complement(409634..409714),complement(409445..409514), >> complement(409201..409289),complement(408696..408805), >> complement(407017..407053),complement(406589..406657), >> complement(406454..406509),complement(406204..406311), >> complement(406025..406083),complement(405800..405915), >> complement(405662..405704),complement(405001..405073), >> complement(404055..404187),complement(402731..402742))/gene >> "ENSG00000147206"/protein_id "ENSP00000361794"/note >> "transcript_id=ENST00000372709"/db_xref "HGNC:NXF3"/db_xref >> "Uniprot/SWISSPROT:NXF3_HUMAN"/db_xref >> "RefSeq_peptide:NP_071335.1"/db_xref >> "Uniprot/SPTREMBL:Q5H9I1_HUMAN"/db_xref >> "Uniprot/SPTREMBL:Q5H9I2_HUMAN"/db_xref "EntrezGene:NXF3"/db_xref >> "AgilentProbe:A_23_P171336"/db_xref "EMBL:AF346619"/db_xref >> "EMBL:AJ277527"/db_xref "EMBL:AJ277660"/db_xref >> "EMBL:BC031616"/db_xref "EMBL:CH471190"/db_xref >> "EMBL:Z75746"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003729"/db_xref "GO:GO:0003729"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005622"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0005737"/db_xref >> "GO:GO:0006810"/db_xref "GO:GO:0016973"/db_xref >> "GO:GO:0016973"/db_xref "GO:GO:0042272"/db_xref >> "HGNC_automatic_transcript:NXF3-201"/db_xref >> "IPI:IPI00004930.5"/db_xref "IPI:IPI00552760.2"/db_xref >> "IPI:IPI00872823.1"/db_xref "MIM_GENE:300316"/db_xref >> "protein_id:AAH31616.1"/db_xref "protein_id:AAL07564.1"/db_xref >> "protein_id:CAC16589.1"/db_xref "protein_id:CAC20434.1"/db_xref >> "protein_id:CAI41984.1"/db_xref "protein_id:CAI41986.1"/db_xref >> "protein_id:EAW54722.1"/db_xref "AFFY_HG_Focus:220110_s_at"/db_xref >> "AFFY_HG_U133A:220110_s_at"/db_xref >> "AFFY_HG_U133A_2:220110_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:220110_s_at"/db_xref >> "AFFY_HG_U95E:89668_at"/db_xref >> "AFFY_U133_X3P:g11545756_3p_at"/db_xref "Codelink:GE500964"/db_xref >> "Illumina_V1:GI_11545756-S"/db_xref >> "Illumina_V2:ILMN_19573"/translation >> "LNLLQTPVPRPHRFSSREPYKDIGKMSLPSGHTTGHTDQVVQRR >> ARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRK >> GSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQN >> ECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF >> VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASL >> DVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSILELFPKLLCL >> DGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSA >> YHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDIVDSLS >> ALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSS >> SLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS"gene >> 413637..415717/gene ENSG00000217368/locus_tag >> "LL0XNC01-221F2.2"misc_RNA 413637..415717/gene >> "ENSG00000217368"/db_xref "RefSeq_dna_predicted:XR_037041"/db_xref >> "RefSeq_dna_predicted:XR_037455"/db_xref >> "RefSeq_dna_predicted:XR_039021"/db_xref >> "Clone_based_vega_transcript:LL0XNC01-221F2.2- >> 001"/db_xref "AFFY_HuEx_1_0_st_v2:3588353"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016361"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016362"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016363"/db_xref >> "AFFY_U133_X3P:Hs.195728.0.A1_3p_at"/db_xref >> "OTTT:OTTHUMT00000057692"/note "processed_pseudogene"/note >> "transcript_id=ENST00000403064"gene complement(482560..482652)/gene >> ENSG00000200662/locus_tag "AL035494.8"misc_RNA >> complement(482560..482652)/gene "ENSG00000200662"/db_xref >> "Clone_based_ensembl_transcri:AL035494.8-201"/db_xref >> "RFAM:RF00019"/note "misc_RNA"/note >> "transcript_id=ENST00000363792"gene complement(532453..533340)/gene >> ENSG00000220705/locus_tag "RP4-635G19.1"misc_RNA >> complement(532453..533340)/gene "ENSG00000220705"/db_xref >> "Clone_based_vega_transcript:RP4-635G19.1-001"/db_xref >> "AFFY_HuEx_1_0_st_v2:2670016"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985483"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985484"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985485"/db_xref "OTTT:OTTHUMT00000057693"/note >> "processed_pseudogene"/note "transcript_id=ENST00000402296"gene >> 541565..543636/gene ENSG00000102409/locus_tag "BEX4"/note "Protein >> BEX4 (Brain-expressed X-linked protein 4) >> (BEX1-like 1) (Nerve growth factor receptor-associated >> protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NWD9]"mRNA >> join(541565..541679,542590..543540)/gene "ENSG00000102409"/note >> "transcript_id=ENST00000372691"CDS 542595..542957/gene >> "ENSG00000102409"/protein_id "ENSP00000361776"/note >> "transcript_id=ENST00000372691"/db_xref "HGNC:BEX4"/db_xref >> "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001073894.1"/db_xref "EntrezGene:BEX4"/db_xref >> "AgilentProbe:A_24_P40551"/db_xref "AgilentProbe:A_32_P156941"/db_xref >> "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref >> "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_curated_transcript:BEX4-002"/db_xref "IPI:IPI00739732.1"/db_xref >> "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref >> "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref >> "AFFY_HG_U133A:215440_s_at"/db_xref >> "AFFY_HG_U133A_2:215440_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref >> "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016383"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref >> "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref >> "Illumina_V2:ILMN_37437"/db_xref "OTTP:59442"/db_xref >> "OTTP:OTTHUMP00000023729"/db_xref >> "OTTT:OTTHUMT00000057695"/translation >> "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ >> KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY >> MRFQTPEPDNHYDFCLIP"mRNA >> join(541565..541679,542123..542205,542590..543636)/gene >> "ENSG00000102409"/note "transcript_id=ENST00000372695"CDS >> 542595..542957/gene "ENSG00000102409"/protein_id >> "ENSP00000361780"/note "transcript_id=ENST00000372695"/db_xref >> "CCDS:CCDS35355.1"/db_xref "Uniprot/SWISSPROT:BEX4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001073894.1"/db_xref >> "RefSeq_dna:NM_001080425"/db_xref >> "RefSeq_dna_predicted:XM_043653"/db_xref "EntrezGene:BEX4"/db_xref >> "AgilentProbe:A_23_P114391"/db_xref "AgilentProbe:A_24_P40551"/db_xref >> "AgilentProbe:A_32_P156941"/db_xref >> "AgilentProbe:A_32_P156947"/db_xref "EMBL:AK000959"/db_xref >> "EMBL:AL035494"/db_xref "EMBL:AY833563"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref >> "HGNC_curated_transcript:BEX4-001"/db_xref "IPI:IPI00739732.1"/db_xref >> "MIM_GENE:300692"/db_xref "protein_id:AAX40681.1"/db_xref >> "protein_id:BAA91443.1"/db_xref "protein_id:CAI42990.1"/db_xref >> "AFFY_HG_U133A:215440_s_at"/db_xref >> "AFFY_HG_U133A_2:215440_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:215440_s_at"/db_xref >> "AFFY_HG_U95A:40916_at"/db_xref "AFFY_HG_U95Av2:40916_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016383"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_U133_X3P:Hs.184736.1.A1_3p_a_at"/db_xref >> "Codelink:GE62279"/db_xref "Illumina_V1:GI_37546229-S"/db_xref >> "Illumina_V2:ILMN_37437"/db_xref "OTTT:OTTHUMT00000057694"/db_xref >> "shares_CDS_with_OTTT:BEX4-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057694"/translation >> "MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQ >> KPGGNIRRGRVRRLVPNFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHY >> MRFQTPEPDNHYDFCLIP"gene complement(579439..581634)/gene >> ENSG00000180964/locus_tag "TCEAL8"/note "Transcription elongation >> factor A protein-like 8 >> (TCEA-like protein 8) (Transcription elongation factor S- >> II protein-like 8). [Source:Uniprot/SWISSPROT;Acc:Q8IYN2]"mRNA >> join(complement(581519..581634), >> complement(579439..580458))/gene "ENSG00000180964"/note >> "transcript_id=ENST00000360000"CDS complement(580067..580420)/gene >> "ENSG00000180964"/protein_id "ENSP00000353093"/note >> "transcript_id=ENST00000360000"/db_xref "HGNC:TCEAL8"/db_xref >> "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006685.1"/db_xref >> "RefSeq_peptide:NP_699164.1"/db_xref "EntrezGene:TCEAL8"/db_xref >> "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref >> "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref >> "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref >> "HGNC_curated_transcript:TCEAL8-002"/db_xref >> "IPI:IPI00217810.1"/db_xref "UniGene:Hs.612731"/db_xref >> "protein_id:AAH35573.1"/db_xref "protein_id:CAI41979.1"/db_xref >> "AFFY_HG_U133B:224819_at"/db_xref >> "AFFY_HG_U133_Plus_2:224819_at"/db_xref >> "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985503"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985505"/db_xref >> "AFFY_U133_X3P:224819_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref >> "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref >> "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057699"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057699"/db_xref >> "shares_CDS_with_OTTT:TCEAL8-002"/translation >> "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ >> EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK >> QRHSRSRPYPVCFRP"mRNA join(complement(581519..581634), >> complement(581046..581118),complement(579439..580458))/gene >> "ENSG00000180964"/note "transcript_id=ENST00000372685"CDS >> complement(580067..580420)/gene "ENSG00000180964"/protein_id >> "ENSP00000361770"/note "transcript_id=ENST00000372685"/db_xref >> "CCDS:CCDS14504.1"/db_xref "Uniprot/SWISSPROT:TCAL8_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006685.1"/db_xref >> "RefSeq_peptide:NP_699164.1"/db_xref "RefSeq_dna:NM_001006684"/db_xref >> "RefSeq_dna:NM_153333"/db_xref "EntrezGene:TCEAL8"/db_xref >> "AgilentCGH:A_14_P106843"/db_xref "AgilentProbe:A_23_P11331"/db_xref >> "AgilentProbe:A_32_P472994"/db_xref "EMBL:BC035573"/db_xref >> "EMBL:Z68694"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref >> "HGNC_curated_transcript:TCEAL8-001"/db_xref >> "IPI:IPI00217810.1"/db_xref "protein_id:AAH35573.1"/db_xref >> "protein_id:CAI41979.1"/db_xref "AFFY_HG_U133B:224819_at"/db_xref >> "AFFY_HG_U133_Plus_2:224819_at"/db_xref >> "AFFY_HG_U95B:45773_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985502"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985503"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985504"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985505"/db_xref >> "AFFY_U133_X3P:224819_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_at"/db_xref >> "AFFY_U133_X3P:Hs.288361.0.S1_3p_x_at"/db_xref >> "Codelink:GE87707"/db_xref "Illumina_V1:GI_23503246-S"/db_xref >> "Illumina_V2:ILMN_12551"/db_xref "OTTT:OTTHUMT00000057698"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057698"/db_xref >> "shares_CDS_with_OTTT:TCEAL8-001"/translation >> "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQ >> EAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWK >> QRHSRSRPYPVCFRP"mRNA join(complement(580331..580420), >> complement(580100..580231))/gene "ENSG00000180964"/note >> "transcript_id=ENST00000372681"CDS join(complement(580331..580420), >> complement(580100..580231))/gene "ENSG00000180964"/protein_id >> "ENSP00000361766"/note "transcript_id=ENST00000372681"/db_xref >> "Uniprot/SPTREMBL:Q5H9L1_HUMAN"/db_xref "EMBL:Z68694"/db_xref >> "GO:GO:0003746"/db_xref "HGNC_automatic_transcript:TCEAL8-201"/db_xref >> "IPI:IPI00640443.1"/db_xref "protein_id:CAI41978.1"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985503"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985504"/translation >> "MQKSCEENEGKPQNMPKAEEDRPLEDVPQEDTPVRHLDPEEMIR >> GVDELERLREEIRRVRNKFVMMHWKQRHSR"gene complement(585013..586022)/gene >> ENSG00000219002/locus_tag "LL0XNC01-177E8.2"misc_RNA >> join(complement(585929..586022), >> complement(585013..585759))/gene "ENSG00000219002"/db_xref >> "Clone_based_vega_transcript:LL0XNC01-177E8.2- >> 001"/db_xref "OTTT:OTTHUMT00000057697"/note >> "processed_pseudogene"/note "transcript_id=ENST00000406148"gene >> complement(600132..603313)/gene ENSG00000204065/locus_tag >> "TCEAL5"/note "Transcription elongation factor A protein-like 5 >> (TCEA-like protein 5) (Transcription elongation factor S- >> II protein-like 5). [Source:Uniprot/SWISSPROT;Acc:Q5H9L2]"mRNA >> join(complement(603114..603313), >> complement(601716..601783),complement(600132..601031))/gene >> "ENSG00000204065"/note "transcript_id=ENST00000372680"CDS >> complement(600384..601004)/gene "ENSG00000204065"/protein_id >> "ENSP00000361765"/note "transcript_id=ENST00000372680"/db_xref >> "HGNC:TCEAL5"/db_xref "CCDS:CCDS35356.1"/db_xref >> "Uniprot/SWISSPROT:TCAL5_HUMAN"/db_xref >> "RefSeq_peptide:NP_001012997.1"/db_xref >> "RefSeq_dna:NM_001012979"/db_xref >> "Uniprot/SPTREMBL:A2RUJ4_HUMAN"/db_xref "EntrezGene:TCEAL5"/db_xref >> "AgilentProbe:A_23_P62399"/db_xref "AgilentProbe:A_32_P18470"/db_xref >> "EMBL:BC132922"/db_xref "EMBL:BC132924"/db_xref >> "EMBL:CH471190"/db_xref "EMBL:Z68694"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL5-001"/db_xref >> "IPI:IPI00257932.1"/db_xref "UniGene:Hs.403462"/db_xref >> "protein_id:AAI32923.1"/db_xref "protein_id:AAI32925.1"/db_xref >> "protein_id:CAI41976.1"/db_xref "protein_id:EAW54717.1"/db_xref >> "AFFY_HG_U95E:87383_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref "Codelink:GE876309"/db_xref >> "Illumina_V1:GI_29744085-S"/db_xref "Illumina_V2:ILMN_10460"/db_xref >> "OTTP:59448"/db_xref "OTTP:OTTHUMP00000023730"/db_xref >> "OTTT:OTTHUMT00000057696"/db_xref >> "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057696"/db_xref >> "shares_CDS_and_UTR_with_OTTT:TCEAL5-001"/translation >> "MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDM >> EGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRA >> AEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELR >> KKQKMGGFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV"gene >> complement(635795..637458)/gene ENSG00000133134/locus_tag >> "BEX2"/note "Protein BEX2 (Brain-expressed X-linked protein 2) >> (hBex2). [Source:Uniprot/SWISSPROT;Acc:Q9BXY8]"mRNA >> join(complement(637301..637458), >> complement(636799..636874),complement(635795..636422))/gene >> "ENSG00000133134"/note "transcript_id=ENST00000372677"CDS >> complement(636031..636417)/gene "ENSG00000133134"/protein_id >> "ENSP00000361762"/note "transcript_id=ENST00000372677"/db_xref >> "HGNC:BEX2"/db_xref "CCDS:CCDS14505.1"/db_xref >> "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref >> "RefSeq_peptide:NP_116010.1"/db_xref "RefSeq_dna:NM_032621"/db_xref >> "EntrezGene:BEX2"/db_xref "AgilentProbe:A_23_P22735"/db_xref >> "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref >> "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref >> "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-002"/db_xref >> "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref >> "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref >> "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref >> "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref >> "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref >> "AFFY_HG_U133_Plus_2:224367_at"/db_xref >> "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985510"/db_xref >> "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref >> "Illumina_V1:hmm18828-S"/db_xref "Illumina_V1:hmm36653-S"/db_xref >> "OTTT:OTTHUMT00000057702"/db_xref >> "shares_CDS_with_OTTT:BEX2-002"/db_xref >> "shares_CDS_with_OTTT:BEX2-003"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057702"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057703"/translation >> "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS >> EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK >> QLSHSLRAVSTDPPHHDHHDEFCLMP"mRNA join(complement(637337..637448), >> complement(636799..636874),complement(635943..636422))/gene >> "ENSG00000133134"/note "transcript_id=ENST00000372674"CDS >> complement(636031..636417)/gene "ENSG00000133134"/protein_id >> "ENSP00000361759"/note "transcript_id=ENST00000372674"/db_xref >> "CCDS:CCDS14505.1"/db_xref "Uniprot/SWISSPROT:BEX2_HUMAN"/db_xref >> "RefSeq_peptide:NP_116010.1"/db_xref "EntrezGene:BEX2"/db_xref >> "EMBL:AF251053"/db_xref "EMBL:AL133348"/db_xref >> "EMBL:AY833560"/db_xref "EMBL:BC015522"/db_xref >> "EMBL:Z70233"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "HGNC_curated_transcript:BEX2-003"/db_xref >> "IPI:IPI00013250.1"/db_xref "IPI:IPI00647144.1"/db_xref >> "MIM_GENE:300691"/db_xref "protein_id:AAH15522.1"/db_xref >> "protein_id:AAK34943.1"/db_xref "protein_id:AAX40678.1"/db_xref >> "protein_id:CAD24039.1"/db_xref "protein_id:CAI43071.1"/db_xref >> "protein_id:CAI43072.1"/db_xref "AFFY_HG_U133B:224367_at"/db_xref >> "AFFY_HG_U133_Plus_2:224367_at"/db_xref >> "AFFY_HG_U95C:65704_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985406"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985510"/db_xref >> "AFFY_U133_X3P:g13625167_3p_at"/db_xref "Codelink:GE61080"/db_xref >> "Illumina_V1:hmm18828-S"/db_xref "OTTP:59451"/db_xref >> "OTTP:OTTHUMP00000023736"/db_xref "OTTT:OTTHUMT00000057703"/db_xref >> "shares_CDS_with_ENST:ENST00000372677"/translation >> "MESKEERALNNLIVENVNQENDEKDEKEQVANKGEPLALPLNVS >> EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQARMREENMERIGEEVRQLMEKLREK >> QLSHSLRAVSTDPPHHDHHDEFCLMP"gene 656670..658766/gene >> ENSG00000182916/locus_tag "TCEAL7"/note "Transcription elongation >> factor A protein-like 7 >> (TCEA-like protein 7) (Transcription elongation factor S- >> II protein-like 7). [Source:Uniprot/SWISSPROT;Acc:Q9BRU2]"mRNA >> join(656670..656745,657418..657481,657818..658529)/gene >> "ENSG00000182916"/note "transcript_id=ENST00000372666"CDS >> 657845..658147/gene "ENSG00000182916"/protein_id >> "ENSP00000361751"/note "transcript_id=ENST00000372666"/db_xref >> "HGNC:TCEAL7"/db_xref "CCDS:CCDS14506.1"/db_xref >> "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref >> "RefSeq_peptide:NP_689491.1"/db_xref "RefSeq_dna:NM_152278"/db_xref >> "EntrezGene:TCEAL7"/db_xref "AgilentCGH:A_14_P111438"/db_xref >> "AgilentProbe:A_23_P125788"/db_xref "AgilentProbe:A_24_P49106"/db_xref >> "EMBL:BC005988"/db_xref "EMBL:BC016786"/db_xref >> "EMBL:Z92846"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0006350"/db_xref "GO:GO:0006355"/db_xref >> "HGNC_curated_transcript:TCEAL7-002"/db_xref >> "IPI:IPI00059712.1"/db_xref "protein_id:AAH05988.2"/db_xref >> "protein_id:AAH16786.1"/db_xref "protein_id:CAI41965.1"/db_xref >> "AFFY_HG_U133B:227705_at"/db_xref >> "AFFY_HG_U133_Plus_2:227705_at"/db_xref >> "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016444"/db_xref >> "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref >> "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref >> "Illumina_V2:ILMN_13373"/db_xref "OTTP:59455"/db_xref >> "OTTP:OTTHUMP00000023738"/db_xref "OTTT:OTTHUMT00000057705"/db_xref >> "shares_CDS_with_ENST:ENST00000332431"/translation >> "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS >> LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"mRNA >> join(656678..656745,657364..657481,657818..658766)/gene >> "ENSG00000182916"/note "transcript_id=ENST00000332431"CDS >> 657845..658147/gene "ENSG00000182916"/protein_id >> "ENSP00000329794"/note "transcript_id=ENST00000332431"/db_xref >> "CCDS:CCDS14506.1"/db_xref "Uniprot/SWISSPROT:TCAL7_HUMAN"/db_xref >> "RefSeq_peptide:NP_689491.1"/db_xref "EntrezGene:TCEAL7"/db_xref >> "AgilentCGH:A_14_P111438"/db_xref "AgilentProbe:A_23_P125788"/db_xref >> "AgilentProbe:A_24_P49106"/db_xref "EMBL:BC005988"/db_xref >> "EMBL:BC016786"/db_xref "EMBL:Z92846"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL7-001"/db_xref >> "IPI:IPI00059712.1"/db_xref "UniGene:Hs.602651"/db_xref >> "protein_id:AAH05988.2"/db_xref "protein_id:AAH16786.1"/db_xref >> "protein_id:CAI41965.1"/db_xref "AFFY_HG_U133B:227705_at"/db_xref >> "AFFY_HG_U133_Plus_2:227705_at"/db_xref >> "AFFY_HG_U95C:60810_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016446"/db_xref >> "AFFY_U133_X3P:Hs.21861.0.S1_3p_at"/db_xref >> "Codelink:GE523704"/db_xref "Illumina_V1:GI_23397408-S"/db_xref >> "Illumina_V2:ILMN_13373"/db_xref "OTTT:OTTHUMT00000057704"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057704"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057705"/db_xref >> "shares_CDS_with_OTTT:TCEAL7-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL7-002"/translation >> "MQKPCKENEGKPKCSVPKREEKRPYGEFERQQTEGNFRQRLLQS >> LEEFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI"gene >> complement(673903..674170)/gene ENSG00000215026/locus_tag >> "LL0XNC01-105G4.3"misc_RNA complement(673903..674170)/gene >> "ENSG00000215026"/db_xref "Clone_based_vega_transcript:LL0XNC01-105G4.3- >> 001"/db_xref "OTTT:OTTHUMT00000057708"/note >> "processed_pseudogene"/note "transcript_id=ENST00000399456"gene >> 682893..684892/gene ENSG00000185222/locus_tag "WBP5"/note "WW >> domain-binding protein 5 (WBP-5). >> [Source:Uniprot/SWISSPROT;Acc:Q9UHQ7]"mRNA >> join(682893..683047,684056..684892)/gene "ENSG00000185222"/note >> "transcript_id=ENST00000372656"CDS 684126..684440/gene >> "ENSG00000185222"/protein_id "ENSP00000361740"/note >> "transcript_id=ENST00000372656"/db_xref "HGNC:WBP5"/db_xref >> "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006613.1"/db_xref >> "RefSeq_peptide:NP_001006614.1"/db_xref >> "RefSeq_peptide:NP_001006615.1"/db_xref >> "RefSeq_peptide:NP_057387.1"/db_xref "EntrezGene:WBP5"/db_xref >> "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref >> "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref >> "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref >> "HGNC_curated_transcript:WBP5-002"/db_xref "IPI:IPI00008434.1"/db_xref >> "protein_id:AAF17229.1"/db_xref "protein_id:AAH23544.1"/db_xref >> "protein_id:CAD12327.1"/db_xref "AFFY_HG_Focus:217975_at"/db_xref >> "AFFY_HG_U133A:217975_at"/db_xref "AFFY_HG_U133A_2:217975_at"/db_xref >> "AFFY_HG_U133_Plus_2:217975_at"/db_xref >> "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016456"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016458"/db_xref >> "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref >> "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref >> "OTTT:OTTHUMT00000057707"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057707"/db_xref >> "shares_CDS_with_OTTT:WBP5-002"/translation >> "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT >> FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY >> LM"mRNA join(682893..683047,683524..683602,684056..684892)/gene >> "ENSG00000185222"/note "transcript_id=ENST00000372661"CDS >> 684126..684440/gene "ENSG00000185222"/protein_id >> "ENSP00000361745"/note "transcript_id=ENST00000372661"/db_xref >> "CCDS:CCDS14507.1"/db_xref "Uniprot/SWISSPROT:WPB5_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006613.1"/db_xref >> "RefSeq_peptide:NP_001006614.1"/db_xref >> "RefSeq_peptide:NP_001006615.1"/db_xref >> "RefSeq_peptide:NP_057387.1"/db_xref "RefSeq_dna:NM_001006612"/db_xref >> "RefSeq_dna:NM_001006613"/db_xref "RefSeq_dna:NM_001006614"/db_xref >> "RefSeq_dna:NM_016303"/db_xref "EntrezGene:WBP5"/db_xref >> "AgilentCGH:A_14_P100955"/db_xref "AgilentProbe:A_23_P34133"/db_xref >> "AgilentProbe:A_23_P34142"/db_xref "EMBL:AF125535"/db_xref >> "EMBL:BC023544"/db_xref "EMBL:Z92846"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0050699"/db_xref >> "GO:GO:0050699"/db_xref "HGNC_curated_transcript:WBP5-001"/db_xref >> "IPI:IPI00008434.1"/db_xref "protein_id:AAF17229.1"/db_xref >> "protein_id:AAH23544.1"/db_xref "protein_id:CAD12327.1"/db_xref >> "AFFY_HG_Focus:217975_at"/db_xref "AFFY_HG_U133A:217975_at"/db_xref >> "AFFY_HG_U133A_2:217975_at"/db_xref >> "AFFY_HG_U133_Plus_2:217975_at"/db_xref >> "AFFY_HG_U95B:57055_i_at"/db_xref "AFFY_HG_U95B:57057_r_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016456"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016458"/db_xref >> "AFFY_U133_X3P:g10047099_3p_at"/db_xref "Codelink:GE62268"/db_xref >> "Illumina_V1:GI_10047099-S"/db_xref "Illumina_V2:ILMN_3272"/db_xref >> "OTTT:OTTHUMT00000057706"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057706"/db_xref >> "shares_CDS_with_OTTT:WBP5-001"/translation >> "MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGT >> FRERLIQSLQEFKEDIHNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPY >> LM"gene 702767..704518/gene ENSG00000166681/locus_tag >> "NGFRAP1"/note "Protein BEX3 (Brain-expressed X-linked protein 3) >> (p75NTR-associated cell death executor) (Nerve growth >> factor receptor-associated protein 1) (Ovarian granulosa >> cell 13.0 kDa protein HGR74). >> [Source:Uniprot/SWISSPROT;Acc:Q00994]"mRNA >> join(702767..703054,703469..703547,703904..704509)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000299872"CDS >> 703963..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000299872"/note "transcript_id=ENST00000299872"/db_xref >> "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref >> "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref >> "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref >> "HGNC_automatic_transcript:NGFRAP1-201"/db_xref >> "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "shares_CDS_with_OTTT:NGFRAP1-002"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057710"/translation >> "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR >> QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA >> join(702767..703054,703469..703547,703904..704509)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000372645"CDS >> 703933..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000361728"/note "transcript_id=ENST00000372645"/db_xref >> "HGNC:NGFRAP1"/db_xref "CCDS:CCDS14508.1"/db_xref >> "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref >> "RefSeq_peptide:NP_055195.1"/db_xref >> "RefSeq_peptide:NP_996798.1"/db_xref >> "RefSeq_peptide:NP_996800.1"/db_xref "RefSeq_dna:NM_014380"/db_xref >> "RefSeq_dna:NM_206915"/db_xref "EntrezGene:NGFRAP1"/db_xref >> "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref >> "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref >> "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref >> "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref >> "GO:GO:0005123"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0005737"/db_xref >> "GO:GO:0005829"/db_xref "GO:GO:0006915"/db_xref >> "GO:GO:0006917"/db_xref "GO:GO:0007275"/db_xref >> "GO:GO:0008625"/db_xref "GO:GO:0046872"/db_xref >> "HGNC_curated_transcript:NGFRAP1-001"/db_xref >> "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref >> "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref >> "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref >> "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref >> "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref >> "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTT:OTTHUMT00000057709"/db_xref >> "shares_CDS_with_OTTT:NGFRAP1-001"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057709"/translation >> "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA >> PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD >> HHDEFCLMP"mRNA join(702781..703054,703469..703547,703951..704518)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000361298"CDS >> 703963..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000354843"/note "transcript_id=ENST00000361298"/db_xref >> "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref >> "EntrezGene:NGFRAP1"/db_xref "AgilentProbe:A_23_P45524"/db_xref >> "AgilentProbe:A_32_P27878"/db_xref "AgilentProbe:A_32_P27879"/db_xref >> "HGNC_curated_transcript:NGFRAP1-002"/db_xref >> "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTP:59460"/db_xref "OTTP:OTTHUMP00000023742"/db_xref >> "OTTT:OTTHUMT00000057710"/db_xref >> "shares_CDS_with_ENST:ENST00000299872"/translation >> "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR >> QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"mRNA >> join(702848..703054,703904..704501)/gene "ENSG00000166681"/note >> "transcript_id=ENST00000372635"CDS 703933..704268/gene >> "ENSG00000166681"/protein_id "ENSP00000361718"/note >> "transcript_id=ENST00000372635"/db_xref "CCDS:CCDS14508.1"/db_xref >> "Uniprot/SWISSPROT:BEX3_HUMAN"/db_xref >> "RefSeq_peptide:NP_055195.1"/db_xref >> "RefSeq_peptide:NP_996798.1"/db_xref >> "RefSeq_peptide:NP_996800.1"/db_xref "EntrezGene:NGFRAP1"/db_xref >> "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref >> "AgilentProbe:A_32_P27879"/db_xref "EMBL:AF187064"/db_xref >> "EMBL:AL606763"/db_xref "EMBL:AY833562"/db_xref >> "EMBL:BC003190"/db_xref "EMBL:M38188"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005634"/db_xref >> "GO:GO:0005737"/db_xref "GO:GO:0006915"/db_xref >> "GO:GO:0007275"/db_xref "GO:GO:0046872"/db_xref >> "HGNC_curated_transcript:NGFRAP1-003"/db_xref >> "IPI:IPI00025492.1"/db_xref "IPI:IPI00410144.1"/db_xref >> "MIM_GENE:300361"/db_xref "PDB:1SA6"/db_xref >> "protein_id:AAA63232.1"/db_xref "protein_id:AAF75129.1"/db_xref >> "protein_id:AAH03190.1"/db_xref "protein_id:AAX40680.1"/db_xref >> "protein_id:CAI41522.1"/db_xref "protein_id:CAI41523.1"/db_xref >> "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTP:59461"/db_xref "OTTP:OTTHUMP00000023743"/db_xref >> "OTTT:OTTHUMT00000057711"/translation >> "MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLA >> PNFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHD >> HHDEFCLMP"mRNA join(703357..703547,703951..704512)/gene >> "ENSG00000166681"/note "transcript_id=ENST00000372634"CDS >> 703963..704268/gene "ENSG00000166681"/protein_id >> "ENSP00000361717"/note "transcript_id=ENST00000372634"/db_xref >> "CCDS:CCDS14509.1"/db_xref "RefSeq_peptide:NP_996800.1"/db_xref >> "RefSeq_dna:NM_206917"/db_xref "EntrezGene:NGFRAP1"/db_xref >> "AgilentProbe:A_23_P45524"/db_xref "AgilentProbe:A_32_P27878"/db_xref >> "AgilentProbe:A_32_P27879"/db_xref >> "HGNC_curated_transcript:NGFRAP1-004"/db_xref >> "IPI:IPI00410144.1"/db_xref "AFFY_HG_Focus:217963_s_at"/db_xref >> "AFFY_HG_U133A:217963_s_at"/db_xref >> "AFFY_HG_U133A_2:217963_s_at"/db_xref >> "AFFY_HG_U133_Plus_2:217963_s_at"/db_xref >> "AFFY_HG_U95B:45236_at"/db_xref "AFFY_HuEx_1_0_st_v2:4016460"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016461"/db_xref >> "AFFY_U133_X3P:g7657043_3p_s_at"/db_xref "Codelink:GE567535"/db_xref >> "Illumina_V1:GI_7657043-S"/db_xref "Illumina_V2:ILMN_7162"/db_xref >> "OTTP:59462"/db_xref "OTTP:OTTHUMP00000023744"/db_xref >> "OTTT:OTTHUMT00000057712"/translation >> "MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNR >> QINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP"gene >> complement(826191..845930)/gene ENSG00000172476/locus_tag >> "RAB40A"/note "Ras-related protein Rab-40A (SOCS box-containing >> protein RAR2A) (Protein Rar-2). >> [Source:Uniprot/SWISSPROT;Acc:Q8WXH6]"mRNA >> complement(826191..829316)/gene "ENSG00000172476"/note >> "transcript_id=ENST00000372633"CDS complement(826364..827197)/gene >> "ENSG00000172476"/protein_id "ENSP00000361716"/note >> "transcript_id=ENST00000372633"/db_xref "HGNC:RAB40A"/db_xref >> "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref >> "RefSeq_peptide:NP_543155.2"/db_xref "RefSeq_dna:NM_080879"/db_xref >> "EntrezGene:RAB40A"/db_xref "AgilentCGH:A_14_P129520"/db_xref >> "AgilentProbe:A_23_P259912"/db_xref >> "AgilentProbe:A_32_P464296"/db_xref "AgilentProbe:A_32_P88719"/db_xref >> "EMBL:AB232637"/db_xref "EMBL:AF132748"/db_xref >> "EMBL:AF422143"/db_xref "EMBL:BC074854"/db_xref >> "EMBL:BC074855"/db_xref "EMBL:BC113501"/db_xref >> "EMBL:BC117232"/db_xref "EMBL:Z69733"/db_xref >> "GO:GO:0000166"/db_xref "GO:GO:0003924"/db_xref >> "GO:GO:0005515"/db_xref "GO:GO:0005525"/db_xref >> "GO:GO:0005622"/db_xref "GO:GO:0005886"/db_xref >> "GO:GO:0006512"/db_xref "GO:GO:0006886"/db_xref >> "GO:GO:0006913"/db_xref "GO:GO:0007165"/db_xref >> "GO:GO:0007242"/db_xref "GO:GO:0007264"/db_xref >> "GO:GO:0015031"/db_xref "HGNC_curated_transcript:RAB40A-002"/db_xref >> "IPI:IPI00514509.4"/db_xref "UniGene:Hs.27453"/db_xref >> "protein_id:AAH74854.1"/db_xref "protein_id:AAH74855.1"/db_xref >> "protein_id:AAI13502.1"/db_xref "protein_id:AAI17233.1"/db_xref >> "protein_id:AAL60514.1"/db_xref "protein_id:AAL75949.1"/db_xref >> "protein_id:BAF02899.1"/db_xref "protein_id:CAI41993.1"/db_xref >> "AFFY_HC_G110:107_at"/db_xref "AFFY_HC_G110:108_g_at"/db_xref >> "AFFY_HG_U133A:215782_at"/db_xref "AFFY_HG_U133A:217589_at"/db_xref >> "AFFY_HG_U133A_2:215782_at"/db_xref >> "AFFY_HG_U133A_2:217589_at"/db_xref >> "AFFY_HG_U133_Plus_2:215782_at"/db_xref >> "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref >> "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref >> "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref >> "AFFY_HG_U95Av2:33477_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985603"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985604"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985605"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985606"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985608"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016299"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref >> "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref >> "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V1:Hs.496523-S"/db_xref >> "Illumina_V2:ILMN_123867"/db_xref "Illumina_V2:ILMN_20197"/db_xref >> "OTTP:59465"/db_xref "OTTP:OTTHUMP00000023746"/db_xref >> "OTTT:OTTHUMT00000057714"/translation >> "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS >> HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF >> EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN >> FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL >> RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI >> S"mRNA join(complement(845811..845930), >> complement(843815..843966),complement(826195..827267))/gene >> "ENSG00000172476"/note "transcript_id=ENST00000304236"CDS >> complement(826364..827197)/gene "ENSG00000172476"/protein_id >> "ENSP00000305648"/note "transcript_id=ENST00000304236"/db_xref >> "CCDS:CCDS35357.1"/db_xref "Uniprot/SWISSPROT:RB40A_HUMAN"/db_xref >> "RefSeq_peptide:NP_543155.2"/db_xref "EntrezGene:RAB40A"/db_xref >> "AgilentCGH:A_14_P129520"/db_xref "AgilentProbe:A_23_P259912"/db_xref >> "AgilentProbe:A_32_P88719"/db_xref "EMBL:AB232637"/db_xref >> "EMBL:AF132748"/db_xref "EMBL:AF422143"/db_xref >> "EMBL:BC074854"/db_xref "EMBL:BC074855"/db_xref >> "EMBL:BC113501"/db_xref "EMBL:BC117232"/db_xref >> "EMBL:Z69733"/db_xref "GO:GO:0000166"/db_xref >> "GO:GO:0003924"/db_xref "GO:GO:0005515"/db_xref >> "GO:GO:0005525"/db_xref "GO:GO:0005622"/db_xref >> "GO:GO:0005886"/db_xref "GO:GO:0006512"/db_xref >> "GO:GO:0006886"/db_xref "GO:GO:0006913"/db_xref >> "GO:GO:0007165"/db_xref "GO:GO:0007242"/db_xref >> "GO:GO:0007264"/db_xref "GO:GO:0015031"/db_xref >> "HGNC_curated_transcript:RAB40A-001"/db_xref >> "IPI:IPI00514509.4"/db_xref "protein_id:AAH74854.1"/db_xref >> "protein_id:AAH74855.1"/db_xref "protein_id:AAI13502.1"/db_xref >> "protein_id:AAI17233.1"/db_xref "protein_id:AAL60514.1"/db_xref >> "protein_id:AAL75949.1"/db_xref "protein_id:BAF02899.1"/db_xref >> "protein_id:CAI41993.1"/db_xref "AFFY_HC_G110:107_at"/db_xref >> "AFFY_HC_G110:108_g_at"/db_xref "AFFY_HG_U133A:215782_at"/db_xref >> "AFFY_HG_U133A:217589_at"/db_xref "AFFY_HG_U133A_2:215782_at"/db_xref >> "AFFY_HG_U133A_2:217589_at"/db_xref >> "AFFY_HG_U133_Plus_2:215782_at"/db_xref >> "AFFY_HG_U133_Plus_2:217589_at"/db_xref "AFFY_HG_U95A:107_at"/db_xref >> "AFFY_HG_U95A:108_g_at"/db_xref "AFFY_HG_U95A:33477_at"/db_xref >> "AFFY_HG_U95Av2:107_at"/db_xref "AFFY_HG_U95Av2:108_g_at"/db_xref >> "AFFY_HG_U95Av2:33477_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985603"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985604"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985605"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016299"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_s_at"/db_xref >> "AFFY_U133_X3P:Hs.248013.0.S1_3p_x_at"/db_xref >> "AFFY_U133_X3P:Hs.27453.0.S1_3p_at"/db_xref >> "Illumina_V1:GI_18373330-S"/db_xref "Illumina_V2:ILMN_20197"/db_xref >> "OTTP:59464"/db_xref "OTTP:OTTHUMP00000023745"/db_xref >> "OTTT:OTTHUMT00000057713"/db_xref >> "shares_CDS_and_UTR_with_OTTT:OTTHUMT00000057713"/db_xref >> "shares_CDS_and_UTR_with_OTTT:RAB40A-001"/translation >> "MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYS >> HLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF >> EGMDRWIKKIEEHAPGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCN >> FNIIESFTELARIVLLRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTL >> RSHLKSFSMAKGLNARMMRGLSYSLTTSSTHKSSLCKVEIVCPPQSPPKNCTRNSCKI >> S"gene 902911..914166/gene ENSG00000133142/locus_tag "TCEAL4"/note >> "Transcription elongation factor A protein-like 4 >> (TCEA-like protein 4) (Transcription elongation factor S- >> II protein-like 4). [Source:Uniprot/SWISSPROT;Acc:Q96EI5]"mRNA >> join(902911..902973,903535..903654,912066..912201, >> 912660..912742,913090..913956)/gene "ENSG00000133142"/note >> "transcript_id=ENST00000372629"CDS >> join(902911..902973,903535..903654,912066..912201, >> 912660..912742,913090..913764)/gene >> "ENSG00000133142"/protein_id "ENSP00000361712"/note >> "transcript_id=ENST00000372629"/db_xref "HGNC:TCEAL4"/db_xref >> "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006936.1"/db_xref >> "RefSeq_peptide:NP_001006937.1"/db_xref >> "RefSeq_peptide:NP_001006938.1"/db_xref >> "RefSeq_peptide:NP_079139.4"/db_xref >> "Uniprot/Varsplic:Q96EI5-2"/db_xref "EntrezGene:TCEAL4"/db_xref >> "AgilentCGH:A_14_P118508"/db_xref "AgilentCGH:A_14_P128392"/db_xref >> "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref >> "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref >> "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL4-001"/db_xref >> "IPI:IPI00647163.1"/db_xref "IPI:IPI00657999.3"/db_xref >> "protein_id:AAG44794.1"/db_xref "protein_id:AAH12296.1"/db_xref >> "protein_id:AAL40909.1"/db_xref "protein_id:BAB15023.1"/db_xref >> "protein_id:CAI42031.1"/db_xref "AFFY_HG_U133A:202371_at"/db_xref >> "AFFY_HG_U133A_2:202371_at"/db_xref >> "AFFY_HG_U133_Plus_2:202371_at"/db_xref >> "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016542"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016545"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016547"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016548"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016549"/db_xref >> "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref >> "Illumina_V1:GI_21361595-S"/db_xref "Illumina_V2:ILMN_15986"/db_xref >> "Illumina_V2:ILMN_1896"/db_xref "OTTT:OTTHUMT00000252336"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000252336"/db_xref >> "shares_CDS_with_OTTT:TCEAL4-001"/translation >> "MPAGGQAPQLTPVIPAFWEARGLPNSKGRDKVHICQCEEWKGHI >> SYVERDITTSEIKSLPQVSVRAFHAASGTLEWRKGNGYGRGKGWGWGRVESREAGPSV >> DRDGGLRVCCSQRSAKPEKEEQPVQNPRRSVKDRKRRGNLDMEKLYSENEGMASNQGK >> MENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGEAKEGK >> SEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKG >> LAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFY >> PRGPREFRGGCRAPRRDIEDIPYV"mRNA >> join(911932..912065,912660..912732,913090..914166)/gene >> "ENSG00000133142"/note "transcript_id=ENST00000395036"CDS >> 913117..913764/gene "ENSG00000133142"/protein_id >> "ENSP00000378477"/note "transcript_id=ENST00000395036"/db_xref >> "CCDS:CCDS14510.2"/db_xref "Uniprot/SWISSPROT:TCAL4_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006936.1"/db_xref >> "RefSeq_peptide:NP_001006937.1"/db_xref >> "RefSeq_peptide:NP_001006938.1"/db_xref >> "RefSeq_peptide:NP_079139.4"/db_xref "RefSeq_dna:NM_001006935"/db_xref >> "RefSeq_dna:NM_001006937"/db_xref "RefSeq_dna:NM_024863"/db_xref >> "EntrezGene:TCEAL4"/db_xref "AgilentCGH:A_14_P128392"/db_xref >> "AgilentProbe:A_23_P259166"/db_xref "EMBL:AF271783"/db_xref >> "EMBL:AF314542"/db_xref "EMBL:AK024827"/db_xref >> "EMBL:BC012296"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL4-201"/db_xref >> "IPI:IPI00657999.3"/db_xref "protein_id:AAG44794.1"/db_xref >> "protein_id:AAH12296.1"/db_xref "protein_id:AAL40909.1"/db_xref >> "protein_id:BAB15023.1"/db_xref "protein_id:CAI42031.1"/db_xref >> "AFFY_HG_U133A:202371_at"/db_xref "AFFY_HG_U133A_2:202371_at"/db_xref >> "AFFY_HG_U133_Plus_2:202371_at"/db_xref >> "AFFY_HG_U95A:32251_at"/db_xref "AFFY_HG_U95Av2:32251_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016538"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016540"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016541"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016545"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016547"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016548"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016549"/db_xref >> "AFFY_U133_X3P:g13376293_3p_at"/db_xref "Codelink:GE82969"/db_xref >> "Illumina_V1:GI_21361595-S"/db_xref >> "Illumina_V2:ILMN_1896"/translation >> "MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENE >> GKTENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPES >> EGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFD >> NMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDIEDIPYV"gene >> 933892..936368/gene ENSG00000196507/locus_tag "TCEAL3"/note >> "Transcription elongation factor A protein-like 3 >> (TCEA-like protein 3) (Transcription elongation factor S- >> II protein-like 3). [Source:Uniprot/SWISSPROT;Acc:Q969E4]"mRNA >> join(933892..934157,935045..935114,935484..936368)/gene >> "ENSG00000196507"/note "transcript_id=ENST00000372628"CDS >> 935506..936108/gene "ENSG00000196507"/protein_id >> "ENSP00000361711"/note "transcript_id=ENST00000372628"/db_xref >> "HGNC:TCEAL3"/db_xref "CCDS:CCDS14511.1"/db_xref >> "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref >> "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006934.1"/db_xref >> "RefSeq_peptide:NP_116315.1"/db_xref "RefSeq_dna:NM_001006933"/db_xref >> "RefSeq_dna:NM_032926"/db_xref >> "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref >> "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref >> "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref >> "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref >> "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-002"/db_xref >> "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref >> "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref >> "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref >> "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref >> "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref >> "AFFY_HG_U133B:227279_at"/db_xref >> "AFFY_HG_U133_Plus_2:227279_at"/db_xref >> "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref >> "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref >> "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref >> "OTTP:59471"/db_xref "OTTP:OTTHUMP00000023758"/db_xref >> "OTTT:OTTHUMT00000057737"/db_xref >> "shares_CDS_with_ENST:ENST00000243286"/db_xref >> "shares_CDS_with_ENST:ENST00000372627"/translation >> "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC >> EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA >> EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG >> GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA >> join(934347..934511,935045..935114,935479..936367)/gene >> "ENSG00000196507"/note "transcript_id=ENST00000243286"CDS >> 935506..936108/gene "ENSG00000196507"/protein_id >> "ENSP00000243286"/note "transcript_id=ENST00000243286"/db_xref >> "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref >> "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006934.1"/db_xref >> "RefSeq_peptide:NP_116315.1"/db_xref >> "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref >> "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref >> "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref >> "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref >> "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_automatic_transcript:TCEAL3-201"/db_xref >> "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref >> "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref >> "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref >> "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref >> "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref >> "AFFY_HG_U133B:227279_at"/db_xref >> "AFFY_HG_U133_Plus_2:227279_at"/db_xref >> "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref >> "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref >> "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-002"/translation >> "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC >> EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA >> EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG >> GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"mRNA >> join(934406..934499,935045..935114,935479..936367)/gene >> "ENSG00000196507"/note "transcript_id=ENST00000372627"CDS >> 935506..936108/gene "ENSG00000196507"/protein_id >> "ENSP00000361710"/note "transcript_id=ENST00000372627"/db_xref >> "CCDS:CCDS14511.1"/db_xref "Uniprot/SWISSPROT:TCAL3_HUMAN"/db_xref >> "Uniprot/SWISSPROT:TCAL6_HUMAN"/db_xref >> "RefSeq_peptide:NP_001006934.1"/db_xref >> "RefSeq_peptide:NP_116315.1"/db_xref >> "Uniprot/SPTREMBL:A0AUL7_HUMAN"/db_xref "EntrezGene:TCEAL3"/db_xref >> "AgilentProbe:A_23_P434442"/db_xref "EMBL:AF163263"/db_xref >> "EMBL:AK098494"/db_xref "EMBL:BC007622"/db_xref >> "EMBL:BC008703"/db_xref "EMBL:BC071675"/db_xref >> "EMBL:BC113040"/db_xref "EMBL:Z70719"/db_xref "EMBL:Z73965"/db_xref >> "GO:GO:0005634"/db_xref "GO:GO:0006350"/db_xref >> "GO:GO:0006355"/db_xref "HGNC_curated_transcript:TCEAL3-001"/db_xref >> "IPI:IPI00056312.2"/db_xref "IPI:IPI00478127.3"/db_xref >> "protein_id:AAH07622.1"/db_xref "protein_id:AAH08703.1"/db_xref >> "protein_id:AAH71675.1"/db_xref "protein_id:AAI13041.1"/db_xref >> "protein_id:AAQ13592.1"/db_xref "protein_id:BAC05318.1"/db_xref >> "protein_id:CAI42012.1"/db_xref "protein_id:CAI42029.1"/db_xref >> "AFFY_HG_U133B:227279_at"/db_xref >> "AFFY_HG_U133_Plus_2:227279_at"/db_xref >> "AFFY_HG_U95B:45156_at"/db_xref "AFFY_HuEx_1_0_st_v2:3985036"/db_xref >> "AFFY_HuEx_1_0_st_v2:3985508"/db_xref >> "AFFY_U133_X3P:Hs.39122.0.S1_3p_at"/db_xref "Codelink:GE83587"/db_xref >> "Illumina_V1:GI_31543154-S"/db_xref "Illumina_V2:ILMN_20249"/db_xref >> "OTTT:OTTHUMT00000057736"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057736"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000057737"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL3-002"/translation >> "MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTEC >> EGKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA >> EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG >> GFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQRGLHDIPYL"gene 955161..957387/gene >> ENSG00000172465/locus_tag "TCEAL1"/note "transcription elongation >> factor A (SII)-like 1 >> [Source:RefSeq_peptide;Acc:NP_001006641]"mRNA >> join(955161..955234,955935..956002,956326..957387)/gene >> "ENSG00000172465"/note "transcript_id=ENST00000372626"CDS >> 956358..956837/gene "ENSG00000172465"/protein_id >> "ENSP00000361709"/note "transcript_id=ENST00000372626"/db_xref >> "HGNC:TCEAL1"/db_xref "CCDS:CCDS35358.1"/db_xref >> "RefSeq_peptide:NP_001006640.1"/db_xref >> "RefSeq_peptide:NP_001006641.1"/db_xref >> "RefSeq_peptide:NP_004771.2"/db_xref "RefSeq_dna:NM_001006639"/db_xref >> "RefSeq_dna:NM_001006640"/db_xref "RefSeq_dna:NM_004780"/db_xref >> "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref >> "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref >> "AgilentProbe:A_32_P498070"/db_xref "GO:GO:0005515"/db_xref >> "HGNC_curated_transcript:TCEAL1-001"/db_xref >> "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref >> "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref >> "AFFY_HG_U133A_2:204045_at"/db_xref >> "AFFY_HG_U133_Plus_2:204045_at"/db_xref >> "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016567"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016569"/db_xref >> "AFFY_HuGeneFL:M99701_at"/db_xref >> "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref >> "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref >> "Illumina_V2:ILMN_23088"/db_xref "Illumina_V2:ILMN_28868"/db_xref >> "OTTT:OTTHUMT00000058903"/db_xref "OTTT:OTTHUMT00000058904"/db_xref >> "OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-002"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-003"/translation >> "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS >> EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF >> KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA >> join(955405..955466,955935..956002,956326..957387)/gene >> "ENSG00000172465"/note "transcript_id=ENST00000372624"CDS >> 956358..956837/gene "ENSG00000172465"/protein_id >> "ENSP00000361707"/note "transcript_id=ENST00000372624"/db_xref >> "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref >> "RefSeq_peptide:NP_001006641.1"/db_xref >> "RefSeq_peptide:NP_004771.2"/db_xref >> "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref >> "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref >> "AgilentProbe:A_32_P498070"/db_xref >> "HGNC_automatic_transcript:TCEAL1-201"/db_xref >> "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref >> "AFFY_HG_Focus:204045_at"/db_xref "AFFY_HG_U133A:204045_at"/db_xref >> "AFFY_HG_U133A_2:204045_at"/db_xref >> "AFFY_HG_U133_Plus_2:204045_at"/db_xref >> "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016567"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016569"/db_xref >> "AFFY_HuGeneFL:M99701_at"/db_xref >> "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref >> "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref >> "Illumina_V2:ILMN_23088"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-002"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-003"/translation >> "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS >> EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF >> KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"mRNA >> join(955405..955466,955935..956014,956326..957387)/gene >> "ENSG00000172465"/note "transcript_id=ENST00000372625"CDS >> 956358..956837/gene "ENSG00000172465"/protein_id >> "ENSP00000361708"/note "transcript_id=ENST00000372625"/db_xref >> "CCDS:CCDS35358.1"/db_xref "RefSeq_peptide:NP_001006640.1"/db_xref >> "RefSeq_peptide:NP_001006641.1"/db_xref >> "RefSeq_peptide:NP_004771.2"/db_xref >> "Uniprot/Varsplic:Q15170-2"/db_xref "EntrezGene:TCEAL1"/db_xref >> "AgilentCGH:A_14_P107814"/db_xref "AgilentProbe:A_23_P73801"/db_xref >> "HGNC_automatic_transcript:TCEAL1-202"/db_xref >> "IPI:IPI00477802.1"/db_xref "UniGene:Hs.605138"/db_xref >> "UniGene:Hs.95243"/db_xref "AFFY_HG_Focus:204045_at"/db_xref >> "AFFY_HG_U133A:204045_at"/db_xref "AFFY_HG_U133A_2:204045_at"/db_xref >> "AFFY_HG_U133_Plus_2:204045_at"/db_xref >> "AFFY_HG_U95A:38317_at"/db_xref "AFFY_HG_U95Av2:38317_at"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016567"/db_xref >> "AFFY_HuEx_1_0_st_v2:4016569"/db_xref >> "AFFY_HuGeneFL:M99701_at"/db_xref >> "AFFY_U133_X3P:g4759215_3p_at"/db_xref "Codelink:GE553844"/db_xref >> "Codelink:GE56188"/db_xref "Illumina_V1:GI_4759215-S"/db_xref >> "Illumina_V2:ILMN_23088"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058903"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058904"/db_xref >> "shares_CDS_with_OTTT:OTTHUMT00000058905"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-001"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-002"/db_xref >> "shares_CDS_with_OTTT:TCEAL1-003"/translation >> "MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSS >> EEEFFPEELLPELLPEMLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSF >> KERLARSRPQFRGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"gene >> complement(978174..978547)/gene ENSG00000180284/locus_tag >> "AL049610.9"misc_RNA join(complement(978422..978547), >> complement(978174..978419))/gene "ENSG00000180284"/db_xref >> "AgilentProbe:A_24_P349428"/db_xref >> "Clone_based_ensembl_transcri:AL049610.9-201"/db_xref >> "UniGene:Hs.712229"/note "pseudogene"/note >> "transcript_id=ENST00000312731"exon complement(5148..5254)/note >> "exon_id=ENSE00001396941"exon 32225..32681/note >> "exon_id=ENSE00001553787"exon 40223..40290/note >> "exon_id=ENSE00001318862"exon 39571..39658/note >> "exon_id=ENSE00001520517"exon 38853..38993/note >> "exon_id=ENSE00001520520"exon 40978..44173/note >> "exon_id=ENSE00001435544"exon 40630..40707/note >> "exon_id=ENSE00001296863"exon 38617..38993/note >> "exon_id=ENSE00001322878"exon 74258..74352/note >> "exon_id=ENSE00001458492"exon 47398..47532/note >> "exon_id=ENSE00001359890"exon 75140..79981/note >> "exon_id=ENSE00001458491"exon 72535..72615/note >> "exon_id=ENSE00001038238"exon 74026..74137/note >> "exon_id=ENSE00001458493"exon 47167..47262/note >> "exon_id=ENSE00001359898"exon 75140..78879/note >> "exon_id=ENSE00001458499"exon 99642..99712/note >> "exon_id=ENSE00001501273"exon 112108..113045/note >> "exon_id=ENSE00001559133"exon 113050..113109/note >> "exon_id=ENSE00001501266"exon 113185..113253/note >> "exon_id=ENSE00001501264"exon 113254..113638/note >> "exon_id=ENSE00001547725"exon 114269..114828/note >> "exon_id=ENSE00001549427"exon 123275..123510/note >> "exon_id=ENSE00001559090"exon 122692..122931/note >> "exon_id=ENSE00001563701"exon complement(123532..123603)/note >> "exon_id=ENSE00001501262"exon 123970..124556/note >> "exon_id=ENSE00001557597"exon 124837..125403/note >> "exon_id=ENSE00001550417"exon 125910..126001/note >> "exon_id=ENSE00001552084"exon 126004..126327/note >> "exon_id=ENSE00001549044"exon 126383..127532/note >> "exon_id=ENSE00001556456"exon 127754..127840/note >> "exon_id=ENSE00001562374"exon 127842..127907/note >> "exon_id=ENSE00001501259"exon 129354..129411/note >> "exon_id=ENSE00001501257"exon 129412..129481/note >> "exon_id=ENSE00001501248"exon 129482..129726/note >> "exon_id=ENSE00001554809"exon 131073..132579/note >> "exon_id=ENSE00001556308"exon complement(132605..133087)/note >> "exon_id=ENSE00001553181"exon 133182..134268/note >> "exon_id=ENSE00001547959"exon complement(134334..134386)/note >> "exon_id=ENSE00001501243"exon 135559..135629/note >> "exon_id=ENSE00001501240"exon 136559..136627/note >> "exon_id=ENSE00001501235"exon 263713..264741/note >> "exon_id=ENSE00000675363"exon 333902..334513/note >> "exon_id=ENSE00001556141"exon complement(389101..389720)/note >> "exon_id=ENSE00001458479"exon complement(390537..390681)/note >> "exon_id=ENSE00001105457"exon complement(390083..390172)/note >> "exon_id=ENSE00001105455"exon complement(395306..395427)/note >> "exon_id=ENSE00001564718"exon complement(419437..419535)/note >> "exon_id=ENSE00001458464"exon complement(409839..409943)/note >> "exon_id=ENSE00001322720"exon complement(404055..404187)/note >> "exon_id=ENSE00001302178"exon complement(406454..406509)/note >> "exon_id=ENSE00001293836"exon complement(402265..402441)/note >> "exon_id=ENSE00001458442"exon complement(406025..406083)/note >> "exon_id=ENSE00001314340"exon complement(405800..405915)/note >> "exon_id=ENSE00001325188"exon complement(406204..406311)/note >> "exon_id=ENSE00001313270"exon complement(410050..410133)/note >> "exon_id=ENSE00001303810"exon complement(411156..411324)/note >> "exon_id=ENSE00001327556"exon complement(419437..419540)/note >> "exon_id=ENSE00001520502"exon complement(407017..407053)/note >> "exon_id=ENSE00001322569"exon complement(409445..409514)/note >> "exon_id=ENSE00001308091"exon complement(405001..405073)/note >> "exon_id=ENSE00001293474"exon complement(406589..406657)/note >> "exon_id=ENSE00001301210"exon complement(402682..402742)/note >> "exon_id=ENSE00001327914"exon complement(409201..409289)/note >> "exon_id=ENSE00001292623"exon complement(409634..409714)/note >> "exon_id=ENSE00001291407"exon complement(410783..410936)/note >> "exon_id=ENSE00001311406"exon complement(408696..408805)/note >> "exon_id=ENSE00001309255"exon complement(405662..405704)/note >> "exon_id=ENSE00000979224"exon 413637..415717/note >> "exon_id=ENSE00001547073"exon complement(482560..482652)/note >> "exon_id=ENSE00001438555"exon complement(532453..533340)/note >> "exon_id=ENSE00001554209"exon 542590..543636/note >> "exon_id=ENSE00001458417"exon 542123..542205/note >> "exon_id=ENSE00000674092"exon 541565..541679/note >> "exon_id=ENSE00001458401"exon 542590..543540/note >> "exon_id=ENSE00001458400"exon complement(581519..581634)/note >> "exon_id=ENSE00001520463"exon complement(579439..580458)/note >> "exon_id=ENSE00001419203"exon complement(581046..581118)/note >> "exon_id=ENSE00001263715"exon complement(580331..580420)/note >> "exon_id=ENSE00001458382"exon complement(580100..580231)/note >> "exon_id=ENSE00001458381"exon complement(585013..585759)/note >> "exon_id=ENSE00001558162"exon complement(585929..586022)/note >> "exon_id=ENSE00001556744"exon complement(600132..601031)/note >> "exon_id=ENSE00001458378"exon complement(601716..601783)/note >> "exon_id=ENSE00001458379"exon complement(603114..603313)/note >> "exon_id=ENSE00001458380"exon complement(637301..637458)/note >> "exon_id=ENSE00001458422"exon complement(637337..637448)/note >> "exon_id=ENSE00001458367"exon complement(635795..636422)/note >> "exon_id=ENSE00001458371"exon complement(636799..636874)/note >> "exon_id=ENSE00001038555"exon complement(635943..636422)/note >> "exon_id=ENSE00001458366"exon 657818..658766/note >> "exon_id=ENSE00001325535"exon 657818..658529/note >> "exon_id=ENSE00001458343"exon 657364..657481/note >> "exon_id=ENSE00001305966"exon 657418..657481/note >> "exon_id=ENSE00001458345"exon 656670..656745/note >> "exon_id=ENSE00001458347"exon 656678..656745/note >> "exon_id=ENSE00001291638"exon complement(673903..674170)/note >> "exon_id=ENSE00001538428"exon 683524..683602/note >> "exon_id=ENSE00001318428"exon 682893..683047/note >> "exon_id=ENSE00001292620"exon 684056..684892/note >> "exon_id=ENSE00001458330"exon 703951..704512/note >> "exon_id=ENSE00001436496"exon 703357..703547/note >> "exon_id=ENSE00001458275"exon 702848..703054/note >> "exon_id=ENSE00001458277"exon 702781..703054/note >> "exon_id=ENSE00001375610"exon 703951..704518/note >> "exon_id=ENSE00001458290"exon 702767..703054/note >> "exon_id=ENSE00001458297"exon 703469..703547/note >> "exon_id=ENSE00001416044"exon 703904..704501/note >> "exon_id=ENSE00001458276"exon 703904..704509/note >> "exon_id=ENSE00001105579"exon complement(826191..829316)/note >> "exon_id=ENSE00001458270"exon complement(845811..845930)/note >> "exon_id=ENSE00001183586"exon complement(826195..827267)/note >> "exon_id=ENSE00001173849"exon complement(843815..843966)/note >> "exon_id=ENSE00001183584"exon 903535..903654/note >> "exon_id=ENSE00001183544"exon 911932..912065/note >> "exon_id=ENSE00001520388"exon 913090..913956/note >> "exon_id=ENSE00001458264"exon 912660..912732/note >> "exon_id=ENSE00001520387"exon 913090..914166/note >> "exon_id=ENSE00001520386"exon 912660..912742/note >> "exon_id=ENSE00001183536"exon 902911..902973/note >> "exon_id=ENSE00001458265"exon 912066..912201/note >> "exon_id=ENSE00001183538"exon 933892..934157/note >> "exon_id=ENSE00001458260"exon 935484..936368/note >> "exon_id=ENSE00001458259"exon 935479..936367/note >> "exon_id=ENSE00000840307"exon 934406..934499/note >> "exon_id=ENSE00001253340"exon 935045..935114/note >> "exon_id=ENSE00001253332"exon 934347..934511/note >> "exon_id=ENSE00001458257"exon 955405..955466/note >> "exon_id=ENSE00001458249"exon 955161..955234/note >> "exon_id=ENSE00001458252"exon 956326..957387/note >> "exon_id=ENSE00001458247"exon 955935..956002/note >> "exon_id=ENSE00001406936"exon 955935..956014/note >> "exon_id=ENSE00001458248"exon complement(978174..978419)/note >> "exon_id=ENSE00001250433"exon complement(978422..978547)/note >> "exon_id=ENSE00001250442"STS complement(22038..22346)/standard_name >> "SHGC-143390"/db_xref "UniSTS_NUM:185057"/db_xref >> "UniSTS:SHGC-143390"/note "map_weight=1"STS >> complement(43711..43868)/standard_name "RH78520"/db_xref >> "UniSTS_NUM:73812"/db_xref "UniSTS:RH78520"/db_xref >> "GM99-GB4:stSG41780"/note "map_weight=1"STS >> complement(49890..50031)/standard_name "A008N06"/db_xref >> "UniSTS_NUM:69104"/db_xref "UniSTS:A008N06"/note "map_weight=1"STS >> complement(78623..78780)/standard_name "DXS7007E"/db_xref >> "UniSTS_NUM:87907"/db_xref "UniSTS:DXS7007E"/db_xref >> "WUSTL-X:sWXD2417"/note "map_weight=1"STS >> complement(126684..126809)/standard_name "DXS7692"/db_xref >> "UniSTS_NUM:22137"/db_xref "UniSTS:L41751"/db_xref >> "UniSTS:DXS7692"/db_xref "WUSTL-X:sWXD1549"/note "map_weight=1"STS >> complement(126736..126835)/standard_name "L47999"/db_xref >> "UniSTS_NUM:32118"/db_xref "UniSTS:L47999"/db_xref >> "WUSTL-X:sWXD1440"/note "map_weight=1"STS >> complement(211742..211821)/standard_name "RH93084"/db_xref >> "UniSTS_NUM:88543"/db_xref "UniSTS:RH93084"/db_xref >> "GM99-GB4:stSG48268"/note "map_weight=1"STS >> complement(238085..238337)/standard_name "REN69440"/db_xref >> "UniSTS_NUM:394240"/db_xref "UniSTS:REN69440"/note "map_weight=3"STS >> complement(265241..265340)/standard_name "WI-16593"/db_xref >> "UniSTS_NUM:77493"/db_xref "UniSTS:T40480"/db_xref >> "UniSTS:WI-16593"/note "map_weight=1"STS >> complement(290665..290925)/standard_name "STS-N47340"/db_xref >> "UniSTS_NUM:24198"/db_xref "UniSTS:STS-N47340"/note >> "map_weight=1"STS complement(290723..290889)/standard_name >> "RH45776"/db_xref "UniSTS_NUM:47099"/db_xref >> "UniSTS:RH45776"/db_xref "GM99-GB4:stSG21435"/note "map_weight=1"STS >> complement(331700..331780)/standard_name "L77850"/db_xref >> "UniSTS_NUM:53608"/db_xref "UniSTS:L77850"/db_xref >> "WUSTL-X:sWXD2841"/note "map_weight=1"STS >> complement(389114..389226)/standard_name "RH18267"/db_xref >> "UniSTS_NUM:60599"/db_xref "UniSTS:RH18267"/db_xref >> "GM99-GB4:stSG9586"/note "map_weight=1"STS >> complement(402304..402528)/standard_name "RH79750"/db_xref >> "UniSTS_NUM:88517"/db_xref "UniSTS:RH79750"/db_xref >> "GM99-GB4:sts-AA010600"/note "map_weight=1"STS >> complement(402365..402517)/standard_name "RH102997"/db_xref >> "UniSTS_NUM:97331"/db_xref "UniSTS:RH102997"/db_xref >> "GM99-GB4:stSG54822"/note "map_weight=1"STS >> complement(429978..430117)/standard_name "DXS8350"/db_xref >> "UniSTS_NUM:80166"/db_xref "UniSTS:DXS8350"/db_xref >> "UniSTS:L41954"/db_xref "WUSTL-X:sWXD1283"/note "map_weight=1"STS >> complement(451418..451578)/standard_name "L77848"/db_xref >> "UniSTS_NUM:23678"/db_xref "UniSTS:L77848"/db_xref >> "WUSTL-X:sWXD2804"/note "map_weight=1"STS >> complement(513264..513554)/standard_name "GDB:315297"/db_xref >> "UniSTS_NUM:156514"/db_xref "UniSTS:GDB:315297"/note >> "map_weight=1"STS complement(543431..543624)/standard_name >> "RH80982"/db_xref "UniSTS_NUM:92748"/db_xref >> "UniSTS:RH80982"/db_xref "GM99-GB4:sts-T59331"/note >> "map_weight=1"STS complement(543471..543550)/standard_name >> "RH46879"/db_xref "UniSTS_NUM:24442"/db_xref >> "UniSTS:RH46879"/db_xref "GM99-GB4:stSG25760"/note "map_weight=1"STS >> complement(579449..579628)/standard_name "RH35755"/db_xref >> "UniSTS_NUM:71842"/db_xref "UniSTS:RH35755"/db_xref >> "GM99-GB4:stSG1764"/note "map_weight=1"STS >> complement(579510..579715)/standard_name "A002R41"/db_xref >> "UniSTS_NUM:5253"/db_xref "UniSTS:A002R41"/note "map_weight=1"STS >> complement(579804..579931)/standard_name "STS-R85811"/db_xref >> "UniSTS_NUM:50348"/db_xref "UniSTS:STS-R85811"/note >> "map_weight=1"STS complement(635821..635946)/standard_name >> "WI-15922"/db_xref "UniSTS_NUM:62839"/db_xref >> "UniSTS:WI-15922"/db_xref "UniSTS:G23964"/db_xref >> "UniSTS:R43117"/note "map_weight=1"STS >> complement(649415..649545)/standard_name "G22062"/db_xref >> "UniSTS_NUM:66864"/db_xref "UniSTS:G22062"/note "map_weight=1"STS >> complement(658543..658670)/standard_name "RH12449"/db_xref >> "UniSTS_NUM:76451"/db_xref "UniSTS:RH12449"/db_xref >> "GM99-GB4:stSG3774"/note "map_weight=1"STS >> complement(684688..684818)/standard_name "A006A03"/db_xref >> "UniSTS_NUM:41216"/db_xref "UniSTS:A006A03"/note "map_weight=1"STS >> complement(684688..684818)/standard_name "G20641"/db_xref >> "UniSTS_NUM:41217"/db_xref "UniSTS:G20641"/note "map_weight=1"STS >> complement(703954..704452)/standard_name "141173"/db_xref >> "UniSTS_NUM:141173"/note "map_weight=1"STS >> complement(704257..704403)/standard_name "DXS6984E"/db_xref >> "UniSTS_NUM:2498"/db_xref "UniSTS:DXS6984E"/db_xref >> "GM99-GB4:stSG2932"/note "map_weight=1"STS >> complement(704291..704471)/standard_name "STS-M38188"/db_xref >> "UniSTS_NUM:60882"/db_xref "UniSTS:STS-M38188"/note >> "map_weight=1"STS complement(704352..704489)/standard_name >> "D5S2593"/db_xref "UniSTS_NUM:32572"/db_xref >> "UniSTS:D5S2593"/db_xref "UniSTS:G13550"/note "map_weight=1"STS >> complement(732457..732578)/standard_name "AL035140"/db_xref >> "UniSTS_NUM:94651"/db_xref "UniSTS:AL035140"/note "map_weight=1"STS >> complement(754777..754899)/standard_name "AL035146"/db_xref >> "UniSTS_NUM:94658"/db_xref "UniSTS:AL035146"/note "map_weight=1"STS >> complement(792227..792346)/standard_name "AF020181"/db_xref >> "UniSTS_NUM:39479"/db_xref "UniSTS:AF020181"/db_xref >> "WUSTL-X:sWXD3585"/note "map_weight=1"STS >> complement(796966..797049)/standard_name "L77845"/db_xref >> "UniSTS_NUM:57902"/db_xref "UniSTS:L77845"/db_xref >> "WUSTL-X:sWXD2783"/note "map_weight=1"STS >> complement(803577..803776)/standard_name "DXS1106"/db_xref >> "UniSTS_NUM:30651"/db_xref "UniSTS:DXS1106"/db_xref >> "GM99-GB4:AFM263we1"/db_xref "TNG:SHGC-1092"/note "map_weight=1"STS >> complement(803580..803758)/standard_name "DXS1106"/db_xref >> "UniSTS_NUM:63232"/db_xref "UniSTS:Z17276"/db_xref >> "UniSTS:DXS1106"/db_xref "Genethon:AFM263we1"/db_xref >> "WUSTL-X:sWXD672"/note "map_weight=1"STS >> complement(804260..804395)/standard_name "AF020152"/db_xref >> "UniSTS_NUM:45420"/db_xref "UniSTS:AF020152"/db_xref >> "WUSTL-X:sWXD3586"/note "map_weight=1"STS >> complement(853592..853826)/standard_name "DXS8096"/db_xref >> "UniSTS_NUM:21236"/db_xref "UniSTS:DXS8096"/db_xref >> "UniSTS:Z51652"/db_xref "GM99-G3:AFMa051tc5"/db_xref >> "SHGC-G3:SHGC-21230"/note "map_weight=1"STS >> complement(853592..853864)/standard_name "SHGC-150960"/db_xref >> "UniSTS_NUM:173428"/db_xref "UniSTS:SHGC-150960"/note >> "map_weight=1"STS complement(906210..906384)/standard_name >> "AL008935"/db_xref "UniSTS_NUM:79896"/db_xref "UniSTS:AL008935"/note >> "map_weight=1"STS complement(914019..914122)/standard_name >> "STS-W88790"/db_xref "UniSTS_NUM:82788"/db_xref >> "UniSTS:STS-W88790"/note "map_weight=1"STS >> complement(914808..914927)/standard_name "SHGC-52701"/db_xref >> "UniSTS_NUM:11495"/db_xref "UniSTS:SHGC-52701"/db_xref >> "UniSTS:G36701"/note "map_weight=1"STS >> complement(916610..916774)/standard_name "RH45868"/db_xref >> "UniSTS_NUM:63171"/db_xref "UniSTS:RH45868"/db_xref >> "GM99-GB4:stSG21595"/note "map_weight=1"STS >> complement(936075..936201)/standard_name "RH78743"/db_xref >> "UniSTS_NUM:4877"/db_xref "UniSTS:RH78743"/db_xref >> "GM99-GB4:stSG42368"/note "map_weight=2"STS >> complement(936198..936325)/standard_name "SHGC-34973"/db_xref >> "UniSTS_NUM:23617"/db_xref "UniSTS:SHGC-34973"/db_xref >> "UniSTS:G29704"/note "map_weight=1"STS >> complement(939033..939162)/standard_name "RH17462"/db_xref >> "UniSTS_NUM:41304"/db_xref "UniSTS:H03933"/db_xref >> "UniSTS:RH17462"/note "map_weight=1"STS >> complement(939050..939161)/standard_name "A005E02"/db_xref >> "UniSTS_NUM:56778"/db_xref "UniSTS:G26235"/db_xref >> "UniSTS:R62801"/db_xref "UniSTS:A005E02"/db_xref >> "WI-RH:TIGR-A005E02"/note "map_weight=1"STS >> complement(956876..956996)/standard_name "STS-M99701"/db_xref >> "UniSTS_NUM:21153"/db_xref "UniSTS:STS-M99701"/note >> "map_weight=1"STS complement(957185..957362)/standard_name >> "RH80258"/db_xref "UniSTS_NUM:91622"/db_xref >> "UniSTS:RH80258"/db_xref "GM99-GB4:sts-AA040895"/note >> "map_weight=1"misc_feature 1..109496/note "contig >> AL035427.17.1.161273 51778..161273(1)"misc_feature 109497..189301/note >> "contig AL590407.8.1.81805 2001..81805(1)"misc_feature >> 189302..225201/note "contig Z68871.2.1.37899 1..35900(-1)"misc_feature >> 225202..230371/note "contig AL669904.1.1.5270 >> 101..5270(1)"misc_feature 230372..267593/note "contig >> Z95624.1.1.37322 1..37222(-1)"misc_feature 267594..267689/note >> "contig AL645812.1.1.195 100..195(1)"misc_feature 267690..282719/note >> "contig Z93943.1.1.15130 1..15030(-1)"misc_feature >> 282720..327653/note "contig Z75895.1.1.45038 1..44934(-1)"misc_feature >> 327654..365457/note "contig Z73361.1.1.40509 >> 1..37804(-1)"misc_feature 365458..401071/note "contig >> AL008708.4.1.35714 101..35714(1)"misc_feature 401072..438735/note >> "contig Z75746.1.1.37764 1..37664(-1)"misc_feature 438736..478402/note >> "contig Z85997.1.1.40600 1..39667(-1)"misc_feature >> 478403..547950/note "contig AL035494.8.1.69648 >> 101..69648(1)"misc_feature 547951..564664/note "contig >> Z81014.1.1.16814 1..16714(-1)"misc_feature 564665..605385/note >> "contig Z68694.1.1.40822 1..40721(-1)"misc_feature 605386..645869/note >> "contig AL133348.8.1.40584 101..40584(1)"misc_feature >> 645870..689721/note "contig Z92846.2.1.43952 >> 101..43952(1)"misc_feature 689722..749434/note "contig >> AL606763.6.1.61713 2001..61713(1)"misc_feature 749435..754942/note >> "contig AL079333.8.1.7508 2001..7508(1)"misc_feature >> 754943..807439/note "contig AL117327.5.1.52597 >> 101..52597(1)"misc_feature 807440..848370/note "contig >> Z69733.1.1.41031 1..40931(-1)"misc_feature 848371..875749/note >> "contig AL035444.9.1.27479 101..27479(1)"misc_feature >> 875750..897175/note "contig AL021308.1.1.21526 >> 101..21526(1)"misc_feature 897176..939757/note "contig >> Z73965.1.1.42686 1..42582(-1)"misc_feature 939758..944624/note >> "contig Z68327.1.1.4968 1..4867(-1)"misc_feature 944625..1000000/note >> "contig AL049610.9.1.100269 99..55474(1)" >> Stack trace follows .... >> >> >> at >> org.biojavax.bio.seq.io.GenbankFormat.readRichSequence( >> GenbankFormat.java:462) >> at >> org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) >> ... 1 more >> >> >> _______________________________________________ >> Biojava-l mailing list - Biojava-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> >> >> >> >> >> > > > >