From holland at ebi.ac.uk  Fri Feb  1 04:43:10 2008
From: holland at ebi.ac.uk (Richard Holland)
Date: Fri, 01 Feb 2008 09:43:10 +0000
Subject: [Biojava-dev] [Biojava-l] BioJava 3 design discussion coming to
	an end
In-Reply-To: <477B7AEC.9000401@ebi.ac.uk>
References: <477B7AEC.9000401@ebi.ac.uk>
Message-ID: <47A2E9AE.9020502@ebi.ac.uk>

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Hi all.

It's now February and the time has come for me to take the contents of
the BioJava 3 discussion wiki page and start compiling it into a more
formal proposal.

I'll let you know when I'm done by posting the proposal document on the
BioJava website - probably around the end of this month.

The formal proposal document will then itself be open to discussion and
modification for a short period before any development it requires will
commence.

cheers,
Richard

PS. I will be working from a snapshot of the wiki. Therefore any changes
made to the wiki from now on may not get included.


Richard Holland wrote:
> Hi all.
> 
> At the end of January I will be taking the contents of our BioJava 3
> discussion wiki page and compiling them into a more formal design proposal.
> 
> If you have made any comments elsewhere (e.g. by email) which you would
> like to be considered in the final design proposal, then please add them
> to the wiki page (or its associated Talk page) before the end of the month.
> 
> (I won't be trawling through email archives looking for comments so you
> really must copy your comments across to the wiki if you want them to be
> included!).
> 
> The wiki address is:
> 
>    http://www.biojava.org/wiki/BioJava3_Proposal
> 
> cheers,
> Richard
> 
_______________________________________________
Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
http://lists.open-bio.org/mailman/listinfo/biojava-l

- --
Richard Holland (BioMart)
EMBL EBI, Wellcome Trust Genome Campus,
Hinxton, Cambridgeshire CB10 1SD, UK
Tel. +44 (0)1223 494416

http://www.biomart.org/
http://www.biojava.org/
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From juberpatel at gmail.com  Fri Feb 22 07:43:25 2008
From: juberpatel at gmail.com (juber patel)
Date: Fri, 22 Feb 2008 18:13:25 +0530
Subject: [Biojava-dev] A Gene Expression Programming Library
Message-ID: <f8e28e170802220443q20afe1afnc940c0fd02d62370@mail.gmail.com>

Hello,

i like the "systematic design" approach of BioJava. I see Genetic
Algorithm packages in the API. Is it possible to include my library
for Gene Expression Programming, maybe after some more work on it?

http://amiba.sourceforge.net

-- 
Juber Patel        http://juberpatel.googlepages.com

From markjschreiber at gmail.com  Sun Feb 24 00:07:17 2008
From: markjschreiber at gmail.com (Mark Schreiber)
Date: Sun, 24 Feb 2008 13:07:17 +0800
Subject: [Biojava-dev] A Gene Expression Programming Library
In-Reply-To: <f8e28e170802220443q20afe1afnc940c0fd02d62370@mail.gmail.com>
References: <f8e28e170802220443q20afe1afnc940c0fd02d62370@mail.gmail.com>
Message-ID: <93b45ca50802232107g2c88d5c2od5b0bcf102a0fa3f@mail.gmail.com>

We are currently lacking anything to do with gene expression so a
proposal of what you would like to include would likely be accepted.

Let us know what your plans are.

- Mark

On Fri, Feb 22, 2008 at 8:43 PM, juber patel <juberpatel at gmail.com> wrote:
> Hello,
>
> i like the "systematic design" approach of BioJava. I see Genetic
> Algorithm packages in the API. Is it possible to include my library
> for Gene Expression Programming, maybe after some more work on it?
>
> http://amiba.sourceforge.net
>
> --
> Juber Patel        http://juberpatel.googlepages.com
> _______________________________________________
> biojava-dev mailing list
> biojava-dev at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biojava-dev
>

From holland at ebi.ac.uk  Mon Feb 25 06:39:40 2008
From: holland at ebi.ac.uk (Richard Holland)
Date: Mon, 25 Feb 2008 11:39:40 +0000
Subject: [Biojava-dev] BioJava3 design proposal
Message-ID: <47C2A8FC.1040907@ebi.ac.uk>

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The skeleton based on all your comments is here:

http://biojava.org/wiki/BioJava3_Design

Many of you will probably have details to add to it. Please do this by
modifying the page directly.

cheers,
Richard

- --
Richard Holland (BioMart)
EMBL EBI, Wellcome Trust Genome Campus,
Hinxton, Cambridgeshire CB10 1SD, UK
Tel. +44 (0)1223 494416

http://www.biomart.org/
http://www.biojava.org/
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