From darin.london at duke.edu  Mon May 22 11:29:45 2006
From: darin.london at duke.edu (Darin London)
Date: Mon, 22 May 2006 11:29:45 -0400
Subject: [Biojava-dev] BOSC 2006 2nd Call for Papers
In-Reply-To: <4471CE49.80109@duke.edu>
References: <44294B65.4050207@duke.edu> <4471CE49.80109@duke.edu>
Message-ID: <4471D8E9.8090109@duke.edu>

2nd CALL FOR SPEAKERS

This is the second and last official call for speakers to submit their
abstracts to speak at  BOSC 2006
in Fortaleza, Brasil.  In order to be considered as a potential speaker,
an abstract must be recieved by
Monday, June 5th, 2006.  We look forward to a great conference this
year. Please consult
The Official BOSC 2006 Website at:

http://www.open-bio.org/wiki/BOSC_2006

for more details and information.
 

In addition, a BOSC weblog has been setup to make it easier to
desiminate all BOSC
related announcements:

http://wiki.open-bio.org/boscblog/

And if you have an ICAL compatible Calendar, there is an EventDB
calendar set up with all
BOSC related deadlines.

http://eventful.com/groups/G0-001-000014747-0

More information about ISMB can be found at the Official ISMB 2006 Website:

http://ismb2006.cbi.cnptia.embrapa.br/

Thank You, and we look forward to seeing you all,

The BOSC Organizing Committee.


From mark.schreiber at novartis.com  Mon May 22 22:18:58 2006
From: mark.schreiber at novartis.com (mark.schreiber at novartis.com)
Date: Tue, 23 May 2006 10:18:58 +0800
Subject: [Biojava-dev] Forthcoming change in the EMBL database
Message-ID: <OF77DDBF05.814B2DC5-ON48257177.000C9FB0-48257177.000CB935@EU.novartis.net>

Hi Richard -

Can you be in charge of future proofing the biojavax embl format object to 
cope with this?

Thanks.

- Mark





Carola Kanz <ckanz at ebi.ac.uk>
Sent by: biojava-dev-bounces at lists.open-bio.org
04/26/2006 11:00 PM

 
        To:     biojava-dev at biojava.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-dev] Forthcoming change in the EMBL database



Dear colleagues,

We would like to announce the following important change in the EMBL 
database in June this year.

At the time of release 87 (available from JUN-2006) the format of the 
EMBL flat file will undergo a change: the ID line will have a different 
structure (see below) and the SV line will be removed.

The changes affecting the ID line structure are:

     * All tokens will be separated by a semicolon.
     * The entry name will not be displayed, in its place there will be 
       the primary accession number.
     * The sequence version will be indicated.
     * The topology will be a separate token and will be indicated for 
       both circular and linear molecules.
     * Both the data class and the taxonomic divisions will be displayed.

This is an example of the new ID line:

ID   CD789012; SV 4; linear; genomic DNA; HTG; MAM; 500 BP.
        (1)     (2)     (3)      (4)       (5)  (6)   (7)


The tokens represent:

    1. Primary accession number.
    2. 'SV' + sequence version number.
    3. Topology: 'circular' or 'linear'.
    4. Molecule type.
    5. Data class (ANN, CON, PAT, EST, GSS, HTC, HTG, MGA, WGS, TPA, 
       STS, STD, "normal" entries will have STD for standard).
    6. Taxonomic division (HUM, MUS, ROD, PRO, MAM, VRT, FUN, PLN, ENV, 
       INV, SYN, UNC, VRL, PHG)."
    7. Sequence length + 'BP.'.

The entry name will not be displayed any more in the ID line. Since EMBL 
release 3 (Dec 1983) the stable identifier of an entry has been the 
primary accession number.

A mapping file (entryname to accession number) will be provided with the
next release for those entries where the entryname doesn't coincide with 
the accession number.

To give users a test dataset, one file with new-style ID lines called 
new_id_line.test.gz was provided together with the March release of the 
EMBL database: 
ftp://ftp.ebi.ac.uk/pub/databases/embl/release/new_id_line.test.gz 

Feedback from users is sought; please use the "Contact us" link at the 
bottom of the EBI home page and specify "EMBL" in the feedback form.

Note: this information was first made available on our
"Forthcoming changes" page ( 
http://www.ebi.ac.uk/embl/Documentation/forthcomingchanges.html#0606 ) 
and in the EMBL database release notes.

Regards,
Carola Kanz
EMBL database





_______________________________________________
biojava-dev mailing list
biojava-dev at lists.open-bio.org
http://lists.open-bio.org/mailman/listinfo/biojava-dev




From richard.holland at ebi.ac.uk  Wed May 24 05:44:58 2006
From: richard.holland at ebi.ac.uk (Richard Holland)
Date: Wed, 24 May 2006 10:44:58 +0100
Subject: [Biojava-dev] EMBL 87 format
Message-ID: <1148463898.3963.12.camel@texas.ebi.ac.uk>

Hi all.

I've updated the EMBLFormat in BioJavaX to be capable of reading/writing
files in both Pre-87 and 87+ versions of the EMBL format. By default
it'll read either, and write the new version. If you want it to write
the older version, you have to call the writeSequence() methods directly
and specify the format as EMBL_PRE87_FORMAT.

cheers,
Richard
 
-- 
Richard Holland (BioMart Team)
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
UNITED KINGDOM
Tel: +44-(0)1223-494416


From smh1008 at cam.ac.uk  Wed May 24 18:11:37 2006
From: smh1008 at cam.ac.uk (David Huen)
Date: 24 May 2006 23:11:37 +0100
Subject: [Biojava-dev] ant javadocs-biojava errors
Message-ID: <Prayer.1.0.16.0605242311370.1905@hermes-1.csi.cam.ac.uk>

Hi,
With the 1.4.2_09 SDK and a clean download of BJ, I seem to be getting:-
compile-taglets:
    [javac] Compiling 5 source files to 
/home/david/biocvs/biojava-live/ant-build/classes/taglets
    [javac] /home/david/biocvs/biojava-live/taglets/MetaData.java:33: 
package com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(new 
MetaData()));
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/Option.java:26: package 
com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(instance.getName(), new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(instance));
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/Useage.java:23: package 
com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(instance));
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/UserLevel.java:22: 
package com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/Values.java:23: package 
com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(instance));
    [javac] ^

Is there a new dependency for biojava these days?

Regards,
David

From mark.schreiber at novartis.com  Wed May 24 21:13:13 2006
From: mark.schreiber at novartis.com (mark.schreiber at novartis.com)
Date: Thu, 25 May 2006 09:13:13 +0800
Subject: [Biojava-dev] ant javadocs-biojava errors
Message-ID: <OF15E7CF98.57BC840D-ON48257179.00067CB8-48257179.0006B462@EU.novartis.net>

This is because Sun moved the taglet packages in JDK1.5, there seems to be 
no way to make it work with 1.4 and 1.5. It should not be a critical 
issue, you just won't get some of the extra tags in the Javadocs but they 
should still build.

I moved it to the 1.5 syntax cause most people are on 1.5 now (even if we 
are not yet officially).

If anyone knows a work around please let me know.

- Mark





David Huen <smh1008 at cam.ac.uk>
Sent by: biojava-dev-bounces at lists.open-bio.org
05/25/2006 06:11 AM

 
        To:     biojava-dev <biojava-dev at biojava.org>
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-dev] ant javadocs-biojava errors


Hi,
With the 1.4.2_09 SDK and a clean download of BJ, I seem to be getting:-
compile-taglets:
    [javac] Compiling 5 source files to 
/home/david/biocvs/biojava-live/ant-build/classes/taglets
    [javac] /home/david/biocvs/biojava-live/taglets/MetaData.java:33: 
package com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(new 
MetaData()));
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/Option.java:26: 
package 
com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(instance.getName(), new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(instance));
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/Useage.java:23: 
package 
com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(instance));
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/UserLevel.java:22: 
package com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/Values.java:23: 
package 
com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(instance));
    [javac] ^

Is there a new dependency for biojava these days?

Regards,
David
_______________________________________________
biojava-dev mailing list
biojava-dev at lists.open-bio.org
http://lists.open-bio.org/mailman/listinfo/biojava-dev




From bugzilla-daemon at newportal.open-bio.org  Mon May 22 22:50:49 2006
From: bugzilla-daemon at newportal.open-bio.org (bugzilla-daemon at newportal.open-bio.org)
Date: Mon, 22 May 2006 22:50:49 -0400
Subject: [Biojava-dev] [Bug 2005] New: test bug
Message-ID: <bug-2005-485@http.bugzilla.open-bio.org/>

http://bugzilla.open-bio.org/show_bug.cgi?id=2005

           Summary: test bug
           Product: BioJava
           Version: unspecified
          Platform: Macintosh
        OS/Version: Mac OS
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Others
        AssignedTo: biojava-dev at biojava.org
        ReportedBy: jason at open-bio.org


this is a test bug to see how the system works.


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.

From bugzilla-daemon at newportal.open-bio.org  Mon May 22 22:57:15 2006
From: bugzilla-daemon at newportal.open-bio.org (bugzilla-daemon at newportal.open-bio.org)
Date: Mon, 22 May 2006 22:57:15 -0400
Subject: [Biojava-dev] [Bug 2005] test bug
In-Reply-To: <bug-2005-485@http.bugzilla.open-bio.org/>
Message-ID: <200605230257.k4N2vF3w032091@newportal.open-bio.org>

http://bugzilla.open-bio.org/show_bug.cgi?id=2005





------- Comment #1 from jason at open-bio.org  2006-05-22 22:57 -------
please close me when testing is over.  can someone vote for this bug though if
the voting button shows up for you.


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.

From darin.london at duke.edu  Mon May 22 15:29:45 2006
From: darin.london at duke.edu (Darin London)
Date: Mon, 22 May 2006 11:29:45 -0400
Subject: [Biojava-dev] BOSC 2006 2nd Call for Papers
In-Reply-To: <4471CE49.80109@duke.edu>
References: <44294B65.4050207@duke.edu> <4471CE49.80109@duke.edu>
Message-ID: <4471D8E9.8090109@duke.edu>

2nd CALL FOR SPEAKERS

This is the second and last official call for speakers to submit their
abstracts to speak at  BOSC 2006
in Fortaleza, Brasil.  In order to be considered as a potential speaker,
an abstract must be recieved by
Monday, June 5th, 2006.  We look forward to a great conference this
year. Please consult
The Official BOSC 2006 Website at:

http://www.open-bio.org/wiki/BOSC_2006

for more details and information.
 

In addition, a BOSC weblog has been setup to make it easier to
desiminate all BOSC
related announcements:

http://wiki.open-bio.org/boscblog/

And if you have an ICAL compatible Calendar, there is an EventDB
calendar set up with all
BOSC related deadlines.

http://eventful.com/groups/G0-001-000014747-0

More information about ISMB can be found at the Official ISMB 2006 Website:

http://ismb2006.cbi.cnptia.embrapa.br/

Thank You, and we look forward to seeing you all,

The BOSC Organizing Committee.



From mark.schreiber at novartis.com  Tue May 23 02:18:58 2006
From: mark.schreiber at novartis.com (mark.schreiber at novartis.com)
Date: Tue, 23 May 2006 10:18:58 +0800
Subject: [Biojava-dev] Forthcoming change in the EMBL database
Message-ID: <OF77DDBF05.814B2DC5-ON48257177.000C9FB0-48257177.000CB935@EU.novartis.net>

Hi Richard -

Can you be in charge of future proofing the biojavax embl format object to 
cope with this?

Thanks.

- Mark





Carola Kanz <ckanz at ebi.ac.uk>
Sent by: biojava-dev-bounces at lists.open-bio.org
04/26/2006 11:00 PM

 
        To:     biojava-dev at biojava.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-dev] Forthcoming change in the EMBL database



Dear colleagues,

We would like to announce the following important change in the EMBL 
database in June this year.

At the time of release 87 (available from JUN-2006) the format of the 
EMBL flat file will undergo a change: the ID line will have a different 
structure (see below) and the SV line will be removed.

The changes affecting the ID line structure are:

     * All tokens will be separated by a semicolon.
     * The entry name will not be displayed, in its place there will be 
       the primary accession number.
     * The sequence version will be indicated.
     * The topology will be a separate token and will be indicated for 
       both circular and linear molecules.
     * Both the data class and the taxonomic divisions will be displayed.

This is an example of the new ID line:

ID   CD789012; SV 4; linear; genomic DNA; HTG; MAM; 500 BP.
        (1)     (2)     (3)      (4)       (5)  (6)   (7)


The tokens represent:

    1. Primary accession number.
    2. 'SV' + sequence version number.
    3. Topology: 'circular' or 'linear'.
    4. Molecule type.
    5. Data class (ANN, CON, PAT, EST, GSS, HTC, HTG, MGA, WGS, TPA, 
       STS, STD, "normal" entries will have STD for standard).
    6. Taxonomic division (HUM, MUS, ROD, PRO, MAM, VRT, FUN, PLN, ENV, 
       INV, SYN, UNC, VRL, PHG)."
    7. Sequence length + 'BP.'.

The entry name will not be displayed any more in the ID line. Since EMBL 
release 3 (Dec 1983) the stable identifier of an entry has been the 
primary accession number.

A mapping file (entryname to accession number) will be provided with the
next release for those entries where the entryname doesn't coincide with 
the accession number.

To give users a test dataset, one file with new-style ID lines called 
new_id_line.test.gz was provided together with the March release of the 
EMBL database: 
ftp://ftp.ebi.ac.uk/pub/databases/embl/release/new_id_line.test.gz 

Feedback from users is sought; please use the "Contact us" link at the 
bottom of the EBI home page and specify "EMBL" in the feedback form.

Note: this information was first made available on our
"Forthcoming changes" page ( 
http://www.ebi.ac.uk/embl/Documentation/forthcomingchanges.html#0606 ) 
and in the EMBL database release notes.

Regards,
Carola Kanz
EMBL database





_______________________________________________
biojava-dev mailing list
biojava-dev at lists.open-bio.org
http://lists.open-bio.org/mailman/listinfo/biojava-dev





From richard.holland at ebi.ac.uk  Wed May 24 09:44:58 2006
From: richard.holland at ebi.ac.uk (Richard Holland)
Date: Wed, 24 May 2006 10:44:58 +0100
Subject: [Biojava-dev] EMBL 87 format
Message-ID: <1148463898.3963.12.camel@texas.ebi.ac.uk>

Hi all.

I've updated the EMBLFormat in BioJavaX to be capable of reading/writing
files in both Pre-87 and 87+ versions of the EMBL format. By default
it'll read either, and write the new version. If you want it to write
the older version, you have to call the writeSequence() methods directly
and specify the format as EMBL_PRE87_FORMAT.

cheers,
Richard
 
-- 
Richard Holland (BioMart Team)
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
UNITED KINGDOM
Tel: +44-(0)1223-494416



From smh1008 at cam.ac.uk  Wed May 24 22:11:37 2006
From: smh1008 at cam.ac.uk (David Huen)
Date: 24 May 2006 23:11:37 +0100
Subject: [Biojava-dev] ant javadocs-biojava errors
Message-ID: <Prayer.1.0.16.0605242311370.1905@hermes-1.csi.cam.ac.uk>

Hi,
With the 1.4.2_09 SDK and a clean download of BJ, I seem to be getting:-
compile-taglets:
    [javac] Compiling 5 source files to 
/home/david/biocvs/biojava-live/ant-build/classes/taglets
    [javac] /home/david/biocvs/biojava-live/taglets/MetaData.java:33: 
package com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(new 
MetaData()));
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/Option.java:26: package 
com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(instance.getName(), new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(instance));
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/Useage.java:23: package 
com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(instance));
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/UserLevel.java:22: 
package com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/Values.java:23: package 
com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(instance));
    [javac] ^

Is there a new dependency for biojava these days?

Regards,
David


From mark.schreiber at novartis.com  Thu May 25 01:13:13 2006
From: mark.schreiber at novartis.com (mark.schreiber at novartis.com)
Date: Thu, 25 May 2006 09:13:13 +0800
Subject: [Biojava-dev] ant javadocs-biojava errors
Message-ID: <OF15E7CF98.57BC840D-ON48257179.00067CB8-48257179.0006B462@EU.novartis.net>

This is because Sun moved the taglet packages in JDK1.5, there seems to be 
no way to make it work with 1.4 and 1.5. It should not be a critical 
issue, you just won't get some of the extra tags in the Javadocs but they 
should still build.

I moved it to the 1.5 syntax cause most people are on 1.5 now (even if we 
are not yet officially).

If anyone knows a work around please let me know.

- Mark





David Huen <smh1008 at cam.ac.uk>
Sent by: biojava-dev-bounces at lists.open-bio.org
05/25/2006 06:11 AM

 
        To:     biojava-dev <biojava-dev at biojava.org>
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-dev] ant javadocs-biojava errors


Hi,
With the 1.4.2_09 SDK and a clean download of BJ, I seem to be getting:-
compile-taglets:
    [javac] Compiling 5 source files to 
/home/david/biocvs/biojava-live/ant-build/classes/taglets
    [javac] /home/david/biocvs/biojava-live/taglets/MetaData.java:33: 
package com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(new 
MetaData()));
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/Option.java:26: 
package 
com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(instance.getName(), new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(instance));
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/Useage.java:23: 
package 
com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(instance));
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/UserLevel.java:22: 
package com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(
    [javac] ^
    [javac] /home/david/biocvs/biojava-live/taglets/Values.java:23: 
package 
com.sun.tools.doclets.internal.toolkit.taglets does not exist
    [javac] tagletMap.put(name, new 
com.sun.tools.doclets.internal.toolkit.taglets.LegacyTaglet(instance));
    [javac] ^

Is there a new dependency for biojava these days?

Regards,
David
_______________________________________________
biojava-dev mailing list
biojava-dev at lists.open-bio.org
http://lists.open-bio.org/mailman/listinfo/biojava-dev





From bugzilla-daemon at newportal.open-bio.org  Tue May 23 02:50:49 2006
From: bugzilla-daemon at newportal.open-bio.org (bugzilla-daemon at newportal.open-bio.org)
Date: Mon, 22 May 2006 22:50:49 -0400
Subject: [Biojava-dev] [Bug 2005] New: test bug
Message-ID: <bug-2005-485@http.bugzilla.open-bio.org/>

http://bugzilla.open-bio.org/show_bug.cgi?id=2005

           Summary: test bug
           Product: BioJava
           Version: unspecified
          Platform: Macintosh
        OS/Version: Mac OS
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Others
        AssignedTo: biojava-dev at biojava.org
        ReportedBy: jason at open-bio.org


this is a test bug to see how the system works.


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.


From bugzilla-daemon at newportal.open-bio.org  Tue May 23 02:57:15 2006
From: bugzilla-daemon at newportal.open-bio.org (bugzilla-daemon at newportal.open-bio.org)
Date: Mon, 22 May 2006 22:57:15 -0400
Subject: [Biojava-dev] [Bug 2005] test bug
In-Reply-To: <bug-2005-485@http.bugzilla.open-bio.org/>
Message-ID: <200605230257.k4N2vF3w032091@newportal.open-bio.org>

http://bugzilla.open-bio.org/show_bug.cgi?id=2005





------- Comment #1 from jason at open-bio.org  2006-05-22 22:57 -------
please close me when testing is over.  can someone vote for this bug though if
the voting button shows up for you.


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